Query 031249
Match_columns 163
No_of_seqs 125 out of 1363
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 18:12:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 9.1E-32 3.1E-36 196.8 14.4 117 6-124 63-179 (216)
2 2bcg_Y Protein YP2, GTP-bindin 99.9 1.9E-26 6.3E-31 166.3 16.7 122 6-129 58-179 (206)
3 3cpj_B GTP-binding protein YPT 99.9 4.7E-26 1.6E-30 166.5 12.4 122 6-129 63-184 (223)
4 2bov_A RAla, RAS-related prote 99.9 5.1E-25 1.8E-29 158.2 14.9 120 6-127 63-183 (206)
5 2fu5_C RAS-related protein RAB 99.9 2.3E-24 8E-29 152.3 15.4 121 5-127 57-177 (183)
6 3tkl_A RAS-related protein RAB 99.9 4E-24 1.4E-28 152.5 16.2 121 6-128 66-186 (196)
7 1vg8_A RAS-related protein RAB 99.9 4.8E-24 1.6E-28 153.4 14.4 119 6-127 58-181 (207)
8 2hup_A RAS-related protein RAB 99.9 6.4E-24 2.2E-28 152.9 15.1 117 6-124 79-196 (201)
9 2a5j_A RAS-related protein RAB 99.9 1.2E-23 4.1E-28 150.0 16.3 118 6-125 71-188 (191)
10 2o52_A RAS-related protein RAB 99.9 1.6E-23 5.4E-28 150.7 15.7 122 6-129 75-196 (200)
11 2ew1_A RAS-related protein RAB 99.9 8.6E-24 3E-28 152.6 14.4 118 6-125 76-193 (201)
12 3dz8_A RAS-related protein RAB 99.9 8.7E-24 3E-28 150.7 14.0 118 5-124 72-189 (191)
13 2bme_A RAB4A, RAS-related prot 99.9 1.7E-23 5.7E-28 148.1 14.5 123 6-130 60-182 (186)
14 3q72_A GTP-binding protein RAD 99.9 2.3E-23 7.8E-28 144.7 14.2 115 6-122 50-165 (166)
15 2gf9_A RAS-related protein RAB 99.9 2.7E-23 9.1E-28 147.8 14.8 118 5-124 71-188 (189)
16 1zbd_A Rabphilin-3A; G protein 99.9 3.8E-23 1.3E-27 148.5 15.6 120 5-126 57-176 (203)
17 2g3y_A GTP-binding protein GEM 99.9 2.1E-23 7.1E-28 151.9 14.0 121 3-123 83-205 (211)
18 3tw8_B RAS-related protein RAB 99.9 5.6E-23 1.9E-27 144.3 15.5 120 5-127 58-177 (181)
19 2efe_B Small GTP-binding prote 99.9 3.5E-23 1.2E-27 145.7 14.4 115 6-122 62-176 (181)
20 1z0f_A RAB14, member RAS oncog 99.9 3.6E-23 1.2E-27 145.1 14.1 114 6-121 65-178 (179)
21 2g6b_A RAS-related protein RAB 99.9 4.1E-23 1.4E-27 145.2 14.4 115 6-122 61-175 (180)
22 1g16_A RAS-related protein SEC 99.9 5.9E-23 2E-27 142.9 15.0 114 6-122 53-166 (170)
23 3cph_A RAS-related protein SEC 99.9 8.7E-23 3E-27 147.4 16.3 119 6-127 70-188 (213)
24 3cbq_A GTP-binding protein REM 99.9 3.9E-23 1.3E-27 148.3 14.1 118 4-121 69-188 (195)
25 2j0v_A RAC-like GTP-binding pr 99.9 5.2E-24 1.8E-28 154.1 9.5 117 6-125 58-184 (212)
26 1z08_A RAS-related protein RAB 99.9 2.5E-23 8.4E-28 145.0 12.5 113 6-120 56-168 (170)
27 3kkq_A RAS-related protein M-R 99.9 5.4E-23 1.9E-27 145.2 14.3 113 7-121 68-182 (183)
28 3q85_A GTP-binding protein REM 99.9 3.6E-23 1.2E-27 144.1 13.2 119 4-122 48-168 (169)
29 3bc1_A RAS-related protein RAB 99.9 1.1E-22 3.9E-27 144.2 15.7 120 5-126 70-190 (195)
30 3t5g_A GTP-binding protein RHE 99.9 2.8E-23 9.5E-28 146.5 12.4 116 6-123 55-171 (181)
31 2nzj_A GTP-binding protein REM 99.9 1.1E-22 3.7E-27 142.3 15.3 118 6-125 53-173 (175)
32 2oil_A CATX-8, RAS-related pro 99.9 5.7E-23 1.9E-27 146.5 14.0 118 6-125 75-192 (193)
33 4dsu_A GTPase KRAS, isoform 2B 99.9 1.7E-22 5.7E-27 143.0 15.8 119 7-128 54-173 (189)
34 2yc2_C IFT27, small RAB-relate 99.9 6.4E-23 2.2E-27 147.3 13.6 121 5-127 73-198 (208)
35 3oes_A GTPase rhebl1; small GT 99.9 2.5E-23 8.5E-28 149.5 11.3 119 6-126 73-192 (201)
36 3q3j_B RHO-related GTP-binding 99.9 4E-23 1.4E-27 150.2 12.3 116 6-124 76-206 (214)
37 1r2q_A RAS-related protein RAB 99.9 7.4E-23 2.5E-27 142.2 13.2 113 5-119 55-167 (170)
38 2f7s_A C25KG, RAS-related prot 99.9 5.8E-23 2E-27 149.1 12.8 121 5-127 84-205 (217)
39 2il1_A RAB12; G-protein, GDP, 99.9 5.5E-23 1.9E-27 146.8 12.4 115 6-122 76-191 (192)
40 2gf0_A GTP-binding protein DI- 99.9 2.3E-23 7.8E-28 148.8 10.2 112 6-120 57-170 (199)
41 2fn4_A P23, RAS-related protei 99.9 1.2E-22 4.2E-27 142.6 13.6 117 6-124 58-175 (181)
42 1z0j_A RAB-22, RAS-related pro 99.9 2.2E-22 7.6E-27 139.9 14.4 113 5-119 55-167 (170)
43 2a9k_A RAS-related protein RAL 99.9 1.5E-22 5.2E-27 142.8 13.6 118 6-125 67-185 (187)
44 1u8z_A RAS-related protein RAL 99.9 9.1E-23 3.1E-27 141.4 12.1 114 6-121 53-167 (168)
45 2fg5_A RAB-22B, RAS-related pr 99.9 8.1E-23 2.8E-27 145.9 11.9 115 5-121 72-186 (192)
46 2hxs_A RAB-26, RAS-related pro 99.9 6.1E-23 2.1E-27 144.1 11.1 115 5-121 56-173 (178)
47 3reg_A RHO-like small GTPase; 99.9 2.8E-22 9.6E-27 143.1 14.5 113 7-122 73-189 (194)
48 2q3h_A RAS homolog gene family 99.9 2.5E-22 8.5E-27 144.0 14.2 116 6-124 69-198 (201)
49 3t1o_A Gliding protein MGLA; G 99.9 9.5E-23 3.3E-27 145.1 11.9 115 6-125 75-196 (198)
50 3ihw_A Centg3; RAS, centaurin, 99.9 2.5E-22 8.5E-27 142.8 13.8 112 6-124 68-183 (184)
51 2atx_A Small GTP binding prote 99.9 5E-22 1.7E-26 141.7 15.4 112 6-120 67-192 (194)
52 1ek0_A Protein (GTP-binding pr 99.9 1.8E-22 6.1E-27 140.3 12.7 112 6-119 53-167 (170)
53 3c5c_A RAS-like protein 12; GD 99.9 7.2E-23 2.5E-27 145.8 10.8 113 6-121 70-186 (187)
54 1z2a_A RAS-related protein RAB 99.9 1.8E-22 6.2E-27 140.1 12.6 113 6-121 55-167 (168)
55 2y8e_A RAB-protein 6, GH09086P 99.9 1.3E-22 4.3E-27 142.3 11.8 113 6-120 64-176 (179)
56 1c1y_A RAS-related protein RAP 99.9 2.8E-22 9.5E-27 139.1 13.3 113 6-120 52-166 (167)
57 2p5s_A RAS and EF-hand domain 99.9 1E-22 3.4E-27 146.1 11.3 113 6-120 78-196 (199)
58 1z06_A RAS-related protein RAB 99.9 3.5E-22 1.2E-26 142.0 13.4 114 6-121 70-188 (189)
59 2cjw_A GTP-binding protein GEM 99.9 4.3E-22 1.5E-26 142.5 13.9 122 3-124 52-175 (192)
60 2iwr_A Centaurin gamma 1; ANK 99.9 7.6E-22 2.6E-26 138.7 14.4 114 6-126 55-174 (178)
61 4djt_A GTP-binding nuclear pro 99.9 3.7E-22 1.3E-26 144.9 12.9 122 5-128 61-182 (218)
62 3clv_A RAB5 protein, putative; 99.9 2E-21 6.7E-26 138.6 16.5 114 5-123 93-206 (208)
63 1wms_A RAB-9, RAB9, RAS-relate 99.9 9.3E-22 3.2E-26 137.9 14.4 113 6-121 57-174 (177)
64 1x3s_A RAS-related protein RAB 99.9 6.5E-22 2.2E-26 140.7 13.7 115 5-122 64-179 (195)
65 1ky3_A GTP-binding protein YPT 99.9 9.2E-22 3.1E-26 138.2 14.1 116 6-123 59-180 (182)
66 1kao_A RAP2A; GTP-binding prot 99.9 3.2E-22 1.1E-26 138.5 11.4 114 6-121 52-166 (167)
67 1m7b_A RND3/RHOE small GTP-bin 99.9 4.2E-22 1.4E-26 141.1 12.0 113 6-121 56-183 (184)
68 2gco_A H9, RHO-related GTP-bin 99.9 1.8E-21 6.1E-26 139.9 14.5 113 6-121 74-200 (201)
69 3bwd_D RAC-like GTP-binding pr 99.9 3.7E-22 1.3E-26 140.5 10.4 112 6-120 57-180 (182)
70 3con_A GTPase NRAS; structural 99.9 3.2E-21 1.1E-25 136.9 15.2 117 6-125 70-187 (190)
71 1gwn_A RHO-related GTP-binding 99.9 1.1E-21 3.7E-26 141.9 12.7 114 5-121 76-204 (205)
72 2atv_A RERG, RAS-like estrogen 99.9 1.2E-21 4.1E-26 140.1 12.7 115 6-123 77-193 (196)
73 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.5E-21 5.2E-26 137.7 13.0 112 6-120 54-179 (186)
74 2j1l_A RHO-related GTP-binding 99.9 8E-22 2.7E-26 143.2 11.9 114 6-122 83-210 (214)
75 4bas_A ADP-ribosylation factor 99.9 9.8E-22 3.3E-26 140.3 11.4 119 4-126 62-194 (199)
76 1f6b_A SAR1; gtpases, N-termin 99.9 1.4E-21 4.6E-26 140.5 10.8 112 3-118 67-196 (198)
77 2ce2_X GTPase HRAS; signaling 99.9 6.8E-21 2.3E-25 131.5 13.9 111 7-120 53-164 (166)
78 2fv8_A H6, RHO-related GTP-bin 99.9 6.4E-21 2.2E-25 137.6 14.0 113 6-121 74-200 (207)
79 1r8s_A ADP-ribosylation factor 99.9 4.3E-22 1.5E-26 138.0 7.5 115 3-121 42-162 (164)
80 2erx_A GTP-binding protein DI- 99.9 1.3E-21 4.3E-26 136.2 9.7 112 6-119 52-165 (172)
81 3l0i_B RAS-related protein RAB 99.9 2.3E-23 8E-28 149.5 0.9 114 6-121 83-196 (199)
82 4gzl_A RAS-related C3 botulinu 99.9 2.3E-21 8E-26 139.8 10.9 113 4-119 75-203 (204)
83 1m2o_B GTP-binding protein SAR 99.9 3.4E-21 1.2E-25 137.5 10.8 112 3-118 65-189 (190)
84 2h57_A ADP-ribosylation factor 99.8 1.7E-20 5.9E-25 133.3 13.4 115 3-121 65-187 (190)
85 1upt_A ARL1, ADP-ribosylation 99.8 1.7E-21 5.7E-26 135.8 7.5 114 4-121 50-169 (171)
86 3gj0_A GTP-binding nuclear pro 99.8 6.8E-21 2.3E-25 138.6 9.8 114 5-123 64-177 (221)
87 2b6h_A ADP-ribosylation factor 99.8 1.2E-21 4.1E-26 140.0 5.5 113 4-120 72-190 (192)
88 3llu_A RAS-related GTP-binding 99.8 5E-21 1.7E-25 137.1 8.7 111 5-119 69-195 (196)
89 1fzq_A ADP-ribosylation factor 99.8 1.2E-20 4.2E-25 133.5 10.0 115 3-121 58-178 (181)
90 1zj6_A ADP-ribosylation factor 99.8 1.9E-20 6.5E-25 132.8 11.0 116 3-122 58-179 (187)
91 1ksh_A ARF-like protein 2; sma 99.8 4.1E-20 1.4E-24 130.8 12.5 116 3-122 60-181 (186)
92 2x77_A ADP-ribosylation factor 99.8 3.1E-21 1.1E-25 137.0 6.0 115 4-122 65-185 (189)
93 2h17_A ADP-ribosylation factor 99.8 2.5E-20 8.5E-25 131.6 10.4 112 3-118 63-180 (181)
94 2f9l_A RAB11B, member RAS onco 99.8 3.5E-19 1.2E-23 127.7 16.2 120 6-127 55-174 (199)
95 2wkq_A NPH1-1, RAS-related C3 99.8 8E-20 2.7E-24 140.0 12.9 112 7-121 205-330 (332)
96 1moz_A ARL1, ADP-ribosylation 99.8 4.8E-20 1.6E-24 129.9 10.7 117 3-123 60-182 (183)
97 1zd9_A ADP-ribosylation factor 99.8 5.6E-21 1.9E-25 135.9 5.8 114 4-121 66-185 (188)
98 1cip_A Protein (guanine nucleo 99.8 1E-20 3.5E-25 147.2 6.7 118 3-122 191-345 (353)
99 2zej_A Dardarin, leucine-rich 99.8 1.1E-20 3.6E-25 134.1 5.9 115 4-121 55-178 (184)
100 3r7w_B Gtpase2, GTP-binding pr 99.8 4E-21 1.4E-25 147.5 3.1 119 5-127 46-180 (331)
101 3th5_A RAS-related C3 botulinu 99.7 1.3E-21 4.4E-26 140.8 0.0 111 6-119 79-203 (204)
102 3c5h_A Glucocorticoid receptor 99.8 7.8E-20 2.7E-24 136.4 6.4 105 14-120 125-254 (255)
103 2xtz_A Guanine nucleotide-bind 99.8 9.5E-20 3.3E-24 141.8 6.8 119 4-124 182-348 (354)
104 3lvq_E ARF-GAP with SH3 domain 99.8 1.1E-19 3.7E-24 147.0 6.6 120 3-126 364-489 (497)
105 1zcb_A G alpha I/13; GTP-bindi 99.8 1.3E-19 4.6E-24 141.3 6.5 120 3-124 199-356 (362)
106 3o47_A ADP-ribosylation factor 99.8 9.4E-20 3.2E-24 140.7 5.6 114 4-121 208-327 (329)
107 1azs_C GS-alpha; complex (lyas 99.8 1.6E-19 5.4E-24 142.3 6.9 120 3-124 215-388 (402)
108 3ohm_A Guanine nucleotide-bind 99.8 2.2E-19 7.6E-24 138.1 5.9 118 3-122 165-319 (327)
109 1oix_A RAS-related protein RAB 99.8 7.6E-18 2.6E-22 120.2 13.1 111 7-119 80-190 (191)
110 2fh5_B SR-beta, signal recogni 99.8 6.5E-19 2.2E-23 127.3 7.3 111 4-118 53-213 (214)
111 3r7w_A Gtpase1, GTP-binding pr 99.8 1.3E-18 4.4E-23 133.1 9.1 114 4-120 51-180 (307)
112 2qu8_A Putative nucleolar GTP- 99.8 9.1E-18 3.1E-22 122.8 11.6 118 4-125 75-209 (228)
113 1u0l_A Probable GTPase ENGC; p 99.7 2.5E-18 8.4E-23 131.2 8.5 103 6-117 64-169 (301)
114 2wji_A Ferrous iron transport 99.7 1.8E-18 6E-23 120.6 6.2 107 4-119 49-163 (165)
115 4fid_A G protein alpha subunit 99.7 2.1E-18 7.3E-23 133.2 7.1 117 3-121 159-328 (340)
116 2lkc_A Translation initiation 99.7 5.5E-18 1.9E-22 118.6 8.4 111 3-125 53-175 (178)
117 2cxx_A Probable GTP-binding pr 99.7 1.5E-17 5.1E-22 117.6 8.0 113 6-123 45-186 (190)
118 3dpu_A RAB family protein; roc 99.7 4.7E-17 1.6E-21 132.8 8.7 113 4-122 97-209 (535)
119 1svi_A GTP-binding protein YSX 99.7 1.1E-16 3.8E-21 113.7 8.6 109 5-119 69-193 (195)
120 2dyk_A GTP-binding protein; GT 99.7 6E-17 2.1E-21 111.4 6.8 105 4-119 48-160 (161)
121 2gj8_A MNME, tRNA modification 99.7 6.5E-18 2.2E-22 118.6 1.5 107 3-119 50-164 (172)
122 2wjg_A FEOB, ferrous iron tran 99.7 4.4E-17 1.5E-21 115.1 5.0 110 4-122 53-170 (188)
123 3iev_A GTP-binding protein ERA 99.7 4.7E-16 1.6E-20 118.9 9.9 111 4-119 58-180 (308)
124 3pqc_A Probable GTP-binding pr 99.6 5.8E-16 2E-20 109.6 8.7 109 5-121 68-194 (195)
125 4dcu_A GTP-binding protein ENG 99.6 5.4E-16 1.9E-20 124.4 8.7 117 3-125 241-373 (456)
126 1nrj_B SR-beta, signal recogni 99.6 1.8E-16 6.2E-21 114.7 4.4 102 4-107 54-170 (218)
127 3a1s_A Iron(II) transport prot 99.6 6.9E-16 2.4E-20 115.3 7.2 108 4-120 51-166 (258)
128 3b1v_A Ferrous iron uptake tra 99.6 5.5E-16 1.9E-20 116.7 6.2 107 4-119 48-162 (272)
129 2hjg_A GTP-binding protein ENG 99.6 1.3E-15 4.5E-20 121.5 8.1 114 3-122 221-350 (436)
130 4dhe_A Probable GTP-binding pr 99.6 2.1E-15 7.3E-20 109.3 8.0 114 4-123 78-213 (223)
131 3gee_A MNME, tRNA modification 99.6 4.4E-15 1.5E-19 119.6 9.3 111 3-120 279-397 (476)
132 3iby_A Ferrous iron transport 99.6 5.8E-16 2E-20 115.6 2.9 107 3-118 46-164 (256)
133 2e87_A Hypothetical protein PH 99.6 2.1E-14 7.3E-19 111.8 11.5 116 4-124 213-339 (357)
134 2yv5_A YJEQ protein; hydrolase 99.6 5.5E-15 1.9E-19 112.8 7.5 98 16-116 65-164 (302)
135 1lnz_A SPO0B-associated GTP-bi 99.5 1E-14 3.5E-19 113.0 8.2 110 5-120 206-329 (342)
136 3qq5_A Small GTP-binding prote 99.5 2.7E-15 9.1E-20 119.2 4.4 105 6-120 84-195 (423)
137 3cb4_D GTP-binding protein LEP 99.5 3.4E-14 1.2E-18 117.1 11.0 107 6-120 72-181 (599)
138 3i8s_A Ferrous iron transport 99.5 3E-15 1E-19 112.7 3.4 108 3-119 48-167 (274)
139 2ywe_A GTP-binding protein LEP 99.5 5.5E-14 1.9E-18 115.8 11.1 107 6-120 74-183 (600)
140 3sjy_A Translation initiation 99.5 6.5E-14 2.2E-18 110.7 10.9 111 5-119 75-190 (403)
141 1xzp_A Probable tRNA modificat 99.5 5.9E-14 2E-18 113.2 10.3 108 3-121 289-405 (482)
142 1s0u_A EIF-2-gamma, translatio 99.5 1.2E-13 3.9E-18 109.4 10.5 107 5-119 81-196 (408)
143 3k53_A Ferrous iron transport 99.5 1.8E-14 6E-19 108.1 5.4 110 3-120 48-165 (271)
144 1wf3_A GTP-binding protein; GT 99.5 1.9E-14 6.6E-19 109.7 5.4 107 4-119 54-171 (301)
145 3l82_B F-box only protein 4; T 99.5 1.9E-14 6.7E-19 103.5 5.1 104 13-119 108-221 (227)
146 1mky_A Probable GTP-binding pr 99.5 8.8E-14 3E-18 111.0 9.0 109 3-121 47-166 (439)
147 1g7s_A Translation initiation 99.5 5.2E-13 1.8E-17 110.1 13.2 109 6-123 71-220 (594)
148 1wb1_A Translation elongation 99.5 1.8E-13 6E-18 110.5 10.2 108 4-120 72-188 (482)
149 3p26_A Elongation factor 1 alp 99.4 3.8E-13 1.3E-17 108.6 9.5 104 4-111 110-228 (483)
150 3geh_A MNME, tRNA modification 99.4 1.3E-13 4.3E-18 110.7 6.6 107 3-121 270-384 (462)
151 1kk1_A EIF2gamma; initiation o 99.4 2.6E-13 8.8E-18 107.4 8.2 107 5-119 83-198 (410)
152 2hjg_A GTP-binding protein ENG 99.4 6.2E-14 2.1E-18 111.8 4.4 107 3-120 49-164 (436)
153 2elf_A Protein translation elo 99.4 2.6E-13 8.9E-18 106.2 7.8 111 4-122 59-181 (370)
154 3j2k_7 ERF3, eukaryotic polype 99.4 2.7E-13 9.2E-18 108.3 7.9 105 4-113 94-217 (439)
155 1jny_A EF-1-alpha, elongation 99.4 5.1E-14 1.8E-18 112.3 3.7 107 4-113 83-205 (435)
156 3izy_P Translation initiation 99.4 2.6E-14 8.7E-19 116.4 1.9 111 4-120 51-167 (537)
157 3tr5_A RF-3, peptide chain rel 99.4 7.3E-13 2.5E-17 107.9 10.1 68 4-77 81-148 (528)
158 1r5b_A Eukaryotic peptide chai 99.4 4.4E-14 1.5E-18 113.6 2.6 108 4-113 120-244 (467)
159 1zun_B Sulfate adenylate trans 99.4 2.7E-13 9.1E-18 108.1 6.7 106 4-114 103-217 (434)
160 2c78_A Elongation factor TU-A; 99.4 1.9E-13 6.4E-18 108.1 5.5 98 4-107 74-180 (405)
161 3l2o_B F-box only protein 4; s 99.4 4.3E-13 1.5E-17 100.8 6.8 105 13-120 193-307 (312)
162 1d2e_A Elongation factor TU (E 99.4 4.3E-13 1.5E-17 105.8 7.2 108 5-118 66-192 (397)
163 2qtf_A Protein HFLX, GTP-bindi 99.4 3.4E-12 1.1E-16 99.7 12.1 117 3-122 224-355 (364)
164 1mky_A Probable GTP-binding pr 99.4 3.4E-12 1.2E-16 101.9 11.1 114 3-122 226-356 (439)
165 2ged_A SR-beta, signal recogni 99.4 2E-12 7E-17 91.4 7.9 75 4-80 90-173 (193)
166 1ega_A Protein (GTP-binding pr 99.4 2E-12 7E-17 98.4 8.3 107 6-119 57-173 (301)
167 1zo1_I IF2, translation initia 99.3 5.8E-14 2E-18 113.5 -1.1 106 3-117 49-163 (501)
168 3avx_A Elongation factor TS, e 99.3 2.4E-12 8.1E-17 111.9 8.6 107 5-117 359-482 (1289)
169 3izq_1 HBS1P, elongation facto 99.3 9.8E-13 3.4E-17 108.9 5.0 107 4-112 244-363 (611)
170 1f60_A Elongation factor EEF1A 99.3 1.2E-12 4.1E-17 105.0 4.0 102 5-111 85-202 (458)
171 2qag_A Septin-2, protein NEDD5 99.3 3.4E-13 1.2E-17 105.2 0.1 112 6-124 96-236 (361)
172 4dcu_A GTP-binding protein ENG 99.3 3.5E-12 1.2E-16 102.2 5.6 106 3-119 69-183 (456)
173 2aka_B Dynamin-1; fusion prote 99.3 1.7E-12 5.9E-17 98.0 3.6 113 5-122 125-254 (299)
174 3lxx_A GTPase IMAP family memb 99.3 4.3E-11 1.5E-15 87.9 10.9 114 3-120 76-213 (239)
175 2xtp_A GTPase IMAP family memb 99.3 5.7E-12 1.9E-16 93.6 6.0 114 4-121 70-208 (260)
176 2dy1_A Elongation factor G; tr 99.2 3.9E-11 1.3E-15 100.3 9.6 67 4-76 73-139 (665)
177 3h2y_A GTPase family protein; 99.2 7E-11 2.4E-15 92.3 9.5 96 16-118 55-157 (368)
178 3t34_A Dynamin-related protein 99.1 1.2E-11 4E-16 96.3 2.3 108 5-116 136-256 (360)
179 3lxw_A GTPase IMAP family memb 99.1 2.2E-10 7.5E-15 84.8 8.1 114 4-121 69-208 (247)
180 1dar_A EF-G, elongation factor 99.1 2.4E-10 8.1E-15 95.9 8.9 68 4-77 76-143 (691)
181 2h5e_A Peptide chain release f 99.1 5.8E-10 2E-14 90.9 10.7 68 4-77 81-148 (529)
182 3mca_A HBS1, elongation factor 99.1 1.7E-12 5.7E-17 107.2 -4.5 101 4-109 254-371 (592)
183 1udx_A The GTP-binding protein 99.1 5.3E-10 1.8E-14 88.6 9.7 114 5-123 205-327 (416)
184 2j69_A Bacterial dynamin-like 99.1 1.3E-10 4.6E-15 97.4 6.2 112 5-121 174-325 (695)
185 3t5d_A Septin-7; GTP-binding p 99.1 3.4E-11 1.1E-15 90.4 2.1 84 31-118 116-201 (274)
186 3ec1_A YQEH GTPase; atnos1, at 99.1 3.1E-10 1.1E-14 88.7 7.1 97 15-118 56-159 (369)
187 2rdo_7 EF-G, elongation factor 99.0 1.5E-09 5.3E-14 91.1 11.1 67 5-77 82-148 (704)
188 1jwy_B Dynamin A GTPase domain 99.0 3.1E-10 1E-14 86.3 6.2 111 5-120 131-261 (315)
189 2xex_A Elongation factor G; GT 99.0 1.6E-09 5.5E-14 90.9 10.1 68 4-77 74-141 (693)
190 1yrb_A ATP(GTP)binding protein 99.0 1.6E-09 5.5E-14 80.1 7.8 108 6-120 110-256 (262)
191 1pui_A ENGB, probable GTP-bind 99.0 2.4E-09 8.3E-14 76.4 8.2 109 6-120 73-198 (210)
192 3def_A T7I23.11 protein; chlor 98.9 1.2E-09 4.1E-14 81.3 6.4 79 3-84 82-172 (262)
193 2wsm_A Hydrogenase expression/ 98.9 1.3E-09 4.3E-14 78.7 6.1 105 5-123 109-216 (221)
194 1puj_A YLQF, conserved hypothe 98.9 3.5E-09 1.2E-13 79.9 8.2 95 15-122 7-107 (282)
195 2qnr_A Septin-2, protein NEDD5 98.9 1.7E-10 5.9E-15 87.8 -0.1 109 6-121 77-214 (301)
196 3p32_A Probable GTPase RV1496/ 98.9 6.3E-10 2.2E-14 86.4 2.8 106 4-122 171-285 (355)
197 1wxq_A GTP-binding protein; st 98.8 4.5E-09 1.5E-13 82.9 4.0 49 63-113 214-262 (397)
198 1h65_A Chloroplast outer envel 98.7 1.6E-08 5.4E-13 75.5 6.6 78 4-84 86-175 (270)
199 3vqt_A RF-3, peptide chain rel 98.7 6.2E-08 2.1E-12 79.3 10.0 68 4-77 99-166 (548)
200 2p67_A LAO/AO transport system 98.7 3.6E-08 1.2E-12 76.2 7.2 104 4-120 148-260 (341)
201 2x2e_A Dynamin-1; nitration, h 98.7 3.8E-09 1.3E-13 81.9 1.6 109 5-118 130-255 (353)
202 2qag_C Septin-7; cell cycle, c 98.7 5.5E-09 1.9E-13 82.8 2.5 88 26-117 132-223 (418)
203 1n0u_A EF-2, elongation factor 98.7 1.4E-08 4.9E-13 86.8 4.9 66 5-76 98-163 (842)
204 2www_A Methylmalonic aciduria 98.6 4.5E-07 1.5E-11 70.2 10.2 104 4-121 166-279 (349)
205 3j25_A Tetracycline resistance 98.5 1.3E-07 4.5E-12 78.7 6.7 68 4-77 66-133 (638)
206 3cnl_A YLQF, putative uncharac 98.5 9.6E-08 3.3E-12 71.2 3.7 92 15-117 5-97 (262)
207 2qpt_A EH domain-containing pr 98.5 1E-07 3.5E-12 78.1 4.1 68 6-78 155-233 (550)
208 3zvr_A Dynamin-1; hydrolase, D 98.4 1.1E-07 3.6E-12 80.4 2.2 105 9-118 152-275 (772)
209 1jal_A YCHF protein; nucleotid 98.4 8.7E-06 3E-10 63.3 12.8 42 63-104 199-240 (363)
210 4fn5_A EF-G 1, elongation fact 98.3 3.9E-06 1.3E-10 70.7 10.3 67 6-76 84-150 (709)
211 2dby_A GTP-binding protein; GD 98.3 1.1E-06 3.8E-11 68.5 6.3 52 63-114 201-255 (368)
212 1t9h_A YLOQ, probable GTPase E 98.3 1.9E-07 6.4E-12 71.2 1.7 93 18-113 74-169 (307)
213 2hf9_A Probable hydrogenase ni 98.2 8.8E-07 3E-11 63.8 4.5 58 64-121 165-224 (226)
214 2qm8_A GTPase/ATPase; G protei 98.2 3.5E-06 1.2E-10 64.9 7.2 104 4-120 147-260 (337)
215 2rcn_A Probable GTPase ENGC; Y 98.1 8.1E-06 2.8E-10 63.4 7.7 83 27-114 127-212 (358)
216 4a9a_A Ribosome-interacting GT 97.3 0.0027 9.3E-08 49.5 10.9 90 3-96 117-223 (376)
217 2j37_W Signal recognition part 96.9 0.0011 3.9E-08 53.6 5.3 101 5-118 184-310 (504)
218 2ohf_A Protein OLA1, GTP-bindi 96.1 0.0034 1.2E-07 49.3 3.0 38 6-45 87-131 (396)
219 1ni3_A YCHF GTPase, YCHF GTP-b 95.7 0.1 3.5E-06 40.8 10.0 42 63-104 224-269 (392)
220 4dzz_A Plasmid partitioning pr 95.4 0.027 9.1E-07 39.3 5.2 81 10-97 79-161 (206)
221 3dm5_A SRP54, signal recogniti 95.2 0.05 1.7E-06 43.3 6.8 64 29-102 211-274 (443)
222 3ea0_A ATPase, para family; al 94.4 0.4 1.4E-05 34.1 9.5 84 7-100 121-204 (245)
223 1j8m_F SRP54, signal recogniti 94.3 0.12 4E-06 38.8 6.5 89 9-110 183-280 (297)
224 3cwq_A Para family chromosome 94.0 0.3 1E-05 34.4 7.8 81 10-97 71-152 (209)
225 3kl4_A SRP54, signal recogniti 92.6 0.31 1.1E-05 38.6 6.6 67 30-108 211-277 (433)
226 1wcv_1 SOJ, segregation protei 92.1 0.62 2.1E-05 33.6 7.4 64 9-75 114-181 (257)
227 2v3c_C SRP54, signal recogniti 91.9 1.6 5.5E-05 34.4 10.0 82 8-100 182-271 (432)
228 3end_A Light-independent proto 91.5 2.9 0.0001 30.8 10.7 83 6-99 158-242 (307)
229 1g3q_A MIND ATPase, cell divis 90.5 1.6 5.3E-05 30.8 8.0 80 9-97 114-193 (237)
230 1hyq_A MIND, cell division inh 90.2 1.6 5.4E-05 31.4 8.0 80 7-97 113-192 (263)
231 3pg5_A Uncharacterized protein 88.8 2 7E-05 32.8 7.9 40 93-132 310-358 (361)
232 3k9g_A PF-32 protein; ssgcid, 88.0 1.4 4.7E-05 31.9 6.3 62 7-74 147-208 (267)
233 2oze_A ORF delta'; para, walke 87.8 2.5 8.5E-05 31.0 7.7 82 9-94 157-241 (298)
234 2ph1_A Nucleotide-binding prot 86.5 1.1 3.6E-05 32.5 4.9 87 9-99 131-224 (262)
235 3q9l_A Septum site-determining 86.4 1.2 4E-05 31.9 5.1 64 9-75 116-185 (260)
236 3kjh_A CO dehydrogenase/acetyl 86.2 2.3 7.8E-05 30.0 6.5 61 9-74 134-194 (254)
237 3ec1_A YQEH GTPase; atnos1, at 80.7 0.068 2.3E-06 41.4 -3.8 72 29-105 244-315 (369)
238 2qag_B Septin-6, protein NEDD5 80.5 0.57 2E-05 37.0 1.4 65 33-102 151-217 (427)
239 2afh_E Nitrogenase iron protei 80.5 14 0.00049 26.8 9.4 85 9-98 121-208 (289)
240 2xj4_A MIPZ; replication, cell 80.2 2.1 7.2E-05 31.4 4.3 63 10-75 107-190 (286)
241 1tq4_A IIGP1, interferon-induc 78.8 19 0.00065 28.2 9.5 83 29-119 147-251 (413)
242 3bfv_A CAPA1, CAPB2, membrane 78.5 2.7 9.2E-05 30.8 4.4 62 9-75 194-256 (271)
243 1cp2_A CP2, nitrogenase iron p 78.4 16 0.00053 26.1 10.4 85 9-98 118-205 (269)
244 2xxa_A Signal recognition part 76.8 16 0.00053 28.8 8.6 81 9-100 186-273 (433)
245 3do6_A Formate--tetrahydrofola 73.6 5.6 0.00019 32.1 5.1 99 16-119 295-416 (543)
246 1vma_A Cell division protein F 73.3 11 0.00037 28.2 6.6 63 30-102 222-284 (306)
247 1bif_A 6-phosphofructo-2-kinas 72.0 5.3 0.00018 31.6 4.9 58 7-70 89-156 (469)
248 3e70_C DPA, signal recognition 71.4 6.7 0.00023 29.6 5.1 69 30-110 241-309 (328)
249 1ls1_A Signal recognition part 71.1 15 0.00052 27.1 6.9 63 30-102 210-272 (295)
250 2ffh_A Protein (FFH); SRP54, s 68.4 19 0.00064 28.3 7.2 62 30-101 210-271 (425)
251 3sop_A Neuronal-specific septi 67.7 9.7 0.00033 27.8 5.2 66 29-99 110-178 (270)
252 3szr_A Interferon-induced GTP- 67.4 6.5 0.00022 32.3 4.6 57 18-77 171-228 (608)
253 3cio_A ETK, tyrosine-protein k 64.2 9.3 0.00032 28.3 4.5 63 9-76 216-279 (299)
254 3la6_A Tyrosine-protein kinase 63.9 16 0.00054 26.9 5.7 63 10-76 205-267 (286)
255 1byi_A Dethiobiotin synthase; 63.5 33 0.0011 23.5 7.6 61 33-99 140-201 (224)
256 2px0_A Flagellar biosynthesis 62.1 11 0.00039 27.8 4.7 84 8-101 184-273 (296)
257 2ark_A Flavodoxin; FMN, struct 61.8 19 0.00066 24.3 5.6 71 26-96 48-121 (188)
258 4a9a_A Ribosome-interacting GT 59.6 15 0.00053 28.3 5.1 49 63-118 249-297 (376)
259 3pzx_A Formate--tetrahydrofola 59.2 4.7 0.00016 32.7 2.2 100 16-120 309-429 (557)
260 1ccw_A Protein (glutamate muta 59.2 33 0.0011 22.1 6.8 82 29-119 53-134 (137)
261 3ez9_A Para; DNA binding, wing 58.5 21 0.00073 27.3 5.8 65 6-74 249-321 (403)
262 1zu4_A FTSY; GTPase, signal re 57.8 49 0.0017 24.7 7.6 62 30-101 227-288 (320)
263 2yxb_A Coenzyme B12-dependent 57.2 40 0.0014 22.4 8.2 82 29-125 68-149 (161)
264 2zki_A 199AA long hypothetical 56.0 20 0.00069 24.2 4.9 75 25-99 65-143 (199)
265 2a5l_A Trp repressor binding p 53.4 22 0.00075 24.0 4.7 74 25-98 66-143 (200)
266 3k1y_A Oxidoreductase; structu 52.6 10 0.00035 26.2 2.8 72 24-96 79-150 (191)
267 4hs4_A Chromate reductase; tri 51.6 13 0.00044 25.8 3.2 73 24-97 67-142 (199)
268 3jrn_A AT1G72930 protein; TIR 47.2 51 0.0017 22.5 5.6 56 19-74 51-106 (176)
269 2vzf_A NADH-dependent FMN redu 46.2 9 0.00031 26.3 1.7 70 26-97 65-135 (197)
270 3gfs_A FMN-dependent NADPH-azo 46.2 7 0.00024 26.2 1.1 73 25-98 58-130 (174)
271 3hyn_A Putative signal transdu 46.1 22 0.00076 24.7 3.6 51 18-72 67-118 (189)
272 1ydg_A Trp repressor binding p 43.8 29 0.00098 23.8 4.1 75 25-99 73-151 (211)
273 3svl_A Protein YIEF; E. coli C 42.4 27 0.00093 23.9 3.7 74 24-98 66-142 (193)
274 5nul_A Flavodoxin; electron tr 42.0 49 0.0017 20.7 4.8 67 27-97 42-110 (138)
275 1ko7_A HPR kinase/phosphatase; 41.2 24 0.00083 26.5 3.5 55 56-117 73-127 (314)
276 2fz5_A Flavodoxin; alpha/beta 40.9 38 0.0013 21.0 4.1 68 27-98 43-112 (137)
277 3u7r_A NADPH-dependent FMN red 40.0 24 0.00084 24.2 3.2 107 24-131 61-186 (190)
278 3ub2_A TOLL/interleukin-1 rece 36.8 23 0.00079 23.2 2.5 95 14-124 49-143 (146)
279 3b6i_A Flavoprotein WRBA; flav 36.4 31 0.0011 23.2 3.3 74 25-99 63-140 (198)
280 1rtt_A Conserved hypothetical 36.2 15 0.00051 24.9 1.6 71 26-97 68-141 (193)
281 3fvw_A Putative NAD(P)H-depend 35.8 23 0.00079 24.2 2.5 71 24-96 61-141 (192)
282 3lcm_A SMU.1420, putative oxid 35.1 33 0.0011 23.4 3.2 49 25-73 68-129 (196)
283 3h16_A TIR protein; bacteria T 34.9 8.5 0.00029 25.5 0.1 57 18-74 61-117 (154)
284 1rli_A Trp repressor binding p 34.6 30 0.001 22.9 2.9 73 26-98 67-151 (184)
285 3f6r_A Flavodoxin; FMN binding 34.0 89 0.0031 19.7 6.8 69 28-96 46-118 (148)
286 3ez2_A Plasmid partition prote 32.8 65 0.0022 24.5 4.9 64 6-74 246-318 (398)
287 1t0i_A YLR011WP; FMN binding p 31.5 31 0.0011 23.1 2.6 70 25-98 79-148 (191)
288 1e5d_A Rubredoxin\:oxygen oxid 30.8 1.7E+02 0.0057 21.9 7.6 65 28-96 301-365 (402)
289 2nx2_A Hypothetical protein YP 30.6 54 0.0018 22.4 3.6 14 28-41 128-141 (181)
290 1sqs_A Conserved hypothetical 30.1 43 0.0015 23.6 3.2 70 26-97 75-148 (242)
291 3jy6_A Transcriptional regulat 29.8 1.3E+02 0.0044 21.0 5.8 36 28-74 61-96 (276)
292 3s2y_A Chromate reductase; ura 35.6 11 0.00039 26.0 0.0 49 24-72 67-118 (199)
293 3ha2_A NADPH-quinone reductase 29.4 57 0.0019 22.1 3.6 64 6-72 30-101 (177)
294 1rj9_A FTSY, signal recognitio 29.2 1.7E+02 0.0058 21.5 7.6 64 28-101 218-281 (304)
295 2yvt_A Hypothetical protein AQ 29.0 88 0.003 21.7 4.8 44 29-75 31-101 (260)
296 2q9u_A A-type flavoprotein; fl 29.0 62 0.0021 24.6 4.2 66 27-96 304-371 (414)
297 3cf4_G Acetyl-COA decarboxylas 28.5 75 0.0025 21.1 4.1 44 50-100 25-68 (170)
298 2q62_A ARSH; alpha/beta, flavo 28.1 29 0.00099 25.0 2.0 71 24-96 92-167 (247)
299 1s2d_A Purine trans deoxyribos 28.1 80 0.0027 21.2 4.1 39 27-70 78-116 (167)
300 1uf3_A Hypothetical protein TT 27.6 1.1E+02 0.0038 20.5 5.0 43 30-75 32-75 (228)
301 1eiw_A Hypothetical protein MT 27.5 78 0.0027 19.8 3.7 40 26-69 34-73 (111)
302 1y7o_A ATP-dependent CLP prote 27.3 1.2E+02 0.0042 21.1 5.2 55 14-71 29-83 (218)
303 1req_A Methylmalonyl-COA mutas 27.2 1.9E+02 0.0067 24.4 7.0 80 29-123 646-725 (727)
304 3ezx_A MMCP 1, monomethylamine 27.1 1.1E+02 0.0038 21.3 4.9 43 29-71 142-185 (215)
305 2woj_A ATPase GET3; tail-ancho 26.9 1.9E+02 0.0064 21.7 6.5 42 30-74 234-275 (354)
306 1ycg_A Nitric oxide reductase; 26.4 1.4E+02 0.0049 22.3 5.8 68 27-98 299-366 (398)
307 3l6u_A ABC-type sugar transpor 26.3 1.6E+02 0.0054 20.6 5.8 41 27-75 61-101 (293)
308 2ohh_A Type A flavoprotein FPR 26.1 68 0.0023 24.2 3.9 68 27-98 304-374 (404)
309 1f4p_A Flavodoxin; electron tr 26.1 1E+02 0.0035 19.3 4.3 68 28-96 45-117 (147)
310 3fni_A Putative diflavin flavo 26.0 1.4E+02 0.0048 19.4 10.3 66 27-98 53-118 (159)
311 3d7n_A Flavodoxin, WRBA-like p 25.8 30 0.001 23.5 1.6 71 26-96 50-124 (193)
312 1ag9_A Flavodoxin; electron tr 25.7 43 0.0015 22.3 2.4 70 27-97 42-115 (175)
313 1zpw_X Hypothetical protein TT 24.5 1.1E+02 0.0036 18.2 3.8 15 33-47 5-19 (90)
314 2yhs_A FTSY, cell division pro 24.1 1.9E+02 0.0065 23.3 6.2 62 31-102 412-473 (503)
315 3uc9_A Increased recombination 23.9 18 0.0006 26.1 0.1 39 30-72 102-140 (233)
316 1obo_A Flavodoxin; electron tr 23.5 52 0.0018 21.5 2.5 71 27-97 43-116 (169)
317 4ici_A Putative flavoprotein; 23.4 1.1E+02 0.0036 20.3 4.1 45 27-74 84-128 (171)
318 3l49_A ABC sugar (ribose) tran 23.0 2E+02 0.0067 20.1 6.2 40 27-74 58-97 (291)
319 1d4a_A DT-diaphorase, quinone 22.8 71 0.0024 23.1 3.3 47 27-73 90-149 (273)
320 2kpo_A Rossmann 2X2 fold prote 22.6 58 0.002 19.2 2.2 42 47-96 36-77 (110)
321 2xij_A Methylmalonyl-COA mutas 22.5 3.4E+02 0.011 23.2 7.6 82 29-125 654-735 (762)
322 3fwy_A Light-independent proto 22.0 2.4E+02 0.0083 20.8 10.5 64 27-98 183-248 (314)
323 3hcw_A Maltose operon transcri 22.0 1.4E+02 0.0048 21.1 4.8 38 28-75 66-103 (295)
324 3exc_X Uncharacterized protein 21.9 1.4E+02 0.0047 17.8 3.9 13 32-44 4-16 (91)
325 3gv0_A Transcriptional regulat 21.7 2E+02 0.0067 20.2 5.5 36 29-74 65-100 (288)
326 3fkq_A NTRC-like two-domain pr 21.2 84 0.0029 23.7 3.5 47 6-57 261-307 (373)
327 3tb6_A Arabinose metabolism tr 21.0 1.2E+02 0.0042 21.2 4.3 44 27-75 68-111 (298)
328 2fcr_A Flavodoxin; electron tr 21.0 1.8E+02 0.0062 18.9 5.3 70 28-98 43-121 (173)
329 3f2v_A General stress protein 20.9 71 0.0024 21.9 2.8 48 25-72 53-109 (192)
330 2amj_A Modulator of drug activ 20.5 1.6E+02 0.0056 20.0 4.7 50 4-56 47-96 (204)
331 3h75_A Periplasmic sugar-bindi 20.4 2.5E+02 0.0086 20.3 6.0 45 22-75 51-98 (350)
332 3m9w_A D-xylose-binding peripl 20.0 1.8E+02 0.0063 20.6 5.1 41 27-75 55-95 (313)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.98 E-value=9.1e-32 Score=196.83 Aligned_cols=117 Identities=43% Similarity=0.685 Sum_probs=105.9
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |||+|+|..+++.|++++|++|+|||+++..||+.+..|+..+.....+++|++|||||+|+.+.+.++.++
T Consensus 63 ~l~iwD--taGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e 140 (216)
T 4dkx_A 63 RLQLWD--TAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEE 140 (216)
T ss_dssp EEEEEC--CSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEE--CCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHH
Confidence 455555 999999999999999999999999999999999999999999988877889999999999998888999999
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
+..+++.++++|+++||++|.||+++|+.|++.+.....
T Consensus 141 ~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~~ 179 (216)
T 4dkx_A 141 GERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179 (216)
T ss_dssp HHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC-----
T ss_pred HhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999988865543
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.95 E-value=1.9e-26 Score=166.32 Aligned_cols=122 Identities=42% Similarity=0.761 Sum_probs=110.5
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |||+++|..++..+++++|++|||||+++..+|..+..|+..+........|++||+||+|+.+.+.+..++
T Consensus 58 ~~~l~D--t~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 135 (206)
T 2bcg_Y 58 KLQIWD--TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDV 135 (206)
T ss_dssp EEEEEC--CTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHH
T ss_pred EEEEEe--CCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHH
Confidence 456666 999999999999999999999999999999999999999999988766679999999999998777788889
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 129 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~ 129 (163)
+..++...+++++++||+++.||+++|++|.+.+.+.......+
T Consensus 136 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~~~ 179 (206)
T 2bcg_Y 136 AKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN 179 (206)
T ss_dssp HHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999998876655544
No 3
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.7e-26 Score=166.45 Aligned_cols=122 Identities=45% Similarity=0.804 Sum_probs=103.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |||+++|..++..+++++|++|||||+++..+|..+..|+..+......++|++||+||+|+.+.+.+..++
T Consensus 63 ~~~i~D--t~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 140 (223)
T 3cpj_B 63 KAQIWD--TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEE 140 (223)
T ss_dssp EEEEEC--CTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHH
T ss_pred EEEEEE--CCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHH
Confidence 556666 999999999999999999999999999999999999999999988765679999999999998767788889
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 129 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~ 129 (163)
+..++...+++++++||+++.||+++|++|.+.+.+...+....
T Consensus 141 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~ 184 (223)
T 3cpj_B 141 SKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMD 184 (223)
T ss_dssp HHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC------
T ss_pred HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcccC
Confidence 99999999999999999999999999999999998776665543
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.93 E-value=5.1e-25 Score=158.23 Aligned_cols=120 Identities=32% Similarity=0.488 Sum_probs=107.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.+.||| |||+++|..++..+++++|++|+|||+++..+|..+..|+..+..... .+.|++||+||+|+.+.+.+..+
T Consensus 63 ~~~l~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 140 (206)
T 2bov_A 63 QIDILD--TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVE 140 (206)
T ss_dssp EEEEEE--CCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEc--CCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHH
Confidence 456666 999999999999999999999999999999999999999999987653 47999999999999877778889
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 127 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~ 127 (163)
++..++..++++++++||+++.||+++|++|++.+.++..+..
T Consensus 141 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~ 183 (206)
T 2bov_A 141 EAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 183 (206)
T ss_dssp HHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHcccccc
Confidence 9999999999999999999999999999999999988754443
No 5
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.92 E-value=2.3e-24 Score=152.26 Aligned_cols=121 Identities=42% Similarity=0.797 Sum_probs=96.2
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..++||| |||+++|..++..+++++|++|+|||++++.+|..+..|+..+......+.|++||+||+|+.+.+.+..+
T Consensus 57 ~~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 134 (183)
T 2fu5_C 57 IKLQIWD--TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKE 134 (183)
T ss_dssp EEEEEEE--C---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHH
T ss_pred EEEEEEc--CCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHH
Confidence 3566666 99999999999999999999999999999999999999999998876567999999999999877778889
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 127 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~ 127 (163)
++..+++..+++++++||+++.||+++|.+|.+.+.+...+..
T Consensus 135 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~~~ 177 (183)
T 2fu5_C 135 RGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNW 177 (183)
T ss_dssp HHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999988776554
No 6
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.92 E-value=4e-24 Score=152.46 Aligned_cols=121 Identities=45% Similarity=0.807 Sum_probs=108.2
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+.||| |||++++..++..+++++|++|+|||+++..+|..+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus 66 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 143 (196)
T 3tkl_A 66 KLQIWD--TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTT 143 (196)
T ss_dssp EEEEEE--ECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHH
T ss_pred EEEEEE--CCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHH
Confidence 466666 999999999999999999999999999999999999999999988876779999999999998888888899
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 128 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~ 128 (163)
+..++..++++++++||+++.||+++|++|.+.+.++......
T Consensus 144 ~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~~~ 186 (196)
T 3tkl_A 144 AKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGAT 186 (196)
T ss_dssp HHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999887665443
No 7
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.92 E-value=4.8e-24 Score=153.39 Aligned_cols=119 Identities=35% Similarity=0.608 Sum_probs=103.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCCCCcc
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ilv~nK~D~~~~~~v 81 (163)
.+.||| |||+++|..++..+++++|++|+|||+++..++..+..|+..+..... .+.|+++|+||+|+. .+.+
T Consensus 58 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~ 134 (207)
T 1vg8_A 58 TMQIWD--TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQV 134 (207)
T ss_dssp EEEEEE--ECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCS
T ss_pred EEEEEe--CCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-cccc
Confidence 556666 999999999999999999999999999999999999999998876543 368999999999997 4567
Q ss_pred CHHHHHHHHH-HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249 82 SKEEGEQFAK-ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 127 (163)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~ 127 (163)
..+++..++. ..+++++++||+++.|++++|++|.+.+.+......
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~ 181 (207)
T 1vg8_A 135 ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181 (207)
T ss_dssp CHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhccccc
Confidence 7788888887 667889999999999999999999999988765543
No 8
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.92 E-value=6.4e-24 Score=152.91 Aligned_cols=117 Identities=43% Similarity=0.740 Sum_probs=106.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |+|+++|..++..+++++|++|+|||+++..+|+.+..|+..+......+.|++||+||+|+.+.+.+..++
T Consensus 79 ~l~i~D--t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~ 156 (201)
T 2hup_A 79 KLQIWD--TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAE 156 (201)
T ss_dssp EEEEEC--CTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEE--CCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHH
Confidence 556666 999999999999999999999999999999999999999999988766679999999999998767788899
Q ss_pred HHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 86 GEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 86 ~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
+..++...++ +++++||+++.||+++|++|.+.+.+...
T Consensus 157 ~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 157 AQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999 89999999999999999999999876543
No 9
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.92 E-value=1.2e-23 Score=149.98 Aligned_cols=118 Identities=72% Similarity=1.109 Sum_probs=108.0
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |+|+++|..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus 71 ~~~i~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 148 (191)
T 2a5j_A 71 KLQIWD--TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREE 148 (191)
T ss_dssp EEEEEC--CTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEE--CCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHH
Confidence 556666 999999999999999999999999999999999999999999988766679999999999998777788899
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
+..++...+++++++||+++.||+++|++|.+.+.++..+
T Consensus 149 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 188 (191)
T 2a5j_A 149 GEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188 (191)
T ss_dssp HHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887654
No 10
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.6e-23 Score=150.67 Aligned_cols=122 Identities=60% Similarity=0.927 Sum_probs=110.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |||+++|..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+...+
T Consensus 75 ~l~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 152 (200)
T 2o52_A 75 KLQIWD--TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLE 152 (200)
T ss_dssp EEEEEC--CTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEc--CCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHH
Confidence 556666 999999999999999999999999999999999999999999988766779999999999997767788889
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 129 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~ 129 (163)
+..++...+++++++||+++.||+++|++|++.+.++..+....
T Consensus 153 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~~~ 196 (200)
T 2o52_A 153 ASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196 (200)
T ss_dssp HHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999887665543
No 11
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=8.6e-24 Score=152.57 Aligned_cols=118 Identities=42% Similarity=0.747 Sum_probs=106.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |||+++|..++..+++++|++|+|||+++..+|+.+..|+..+......+.|+++|+||+|+.+.+++..++
T Consensus 76 ~l~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~ 153 (201)
T 2ew1_A 76 KLQIWD--TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQR 153 (201)
T ss_dssp EEEEEE--ECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHH
T ss_pred EEEEEE--CCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHH
Confidence 455666 999999999999999999999999999999999999999999988766679999999999998777788899
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
+..++...+++++++||+++.||+++|++|.+.+.+....
T Consensus 154 ~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~ 193 (201)
T 2ew1_A 154 AEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQ 193 (201)
T ss_dssp HHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999876543
No 12
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=8.7e-24 Score=150.70 Aligned_cols=118 Identities=39% Similarity=0.715 Sum_probs=107.8
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..++||| |+|+++|..++..+++++|++|+|||+++..+|+.+..|+..+......+.|++||+||+|+.+.+.+..+
T Consensus 72 ~~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 149 (191)
T 3dz8_A 72 VKLQIWD--TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTE 149 (191)
T ss_dssp EEEEEEC--HHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEe--CCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHH
Confidence 3466666 99999999999999999999999999999999999999999998877677999999999999877788899
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
++..++...+++++++||+++.||+++|++|++.+.+...
T Consensus 150 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 150 KGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999887654
No 13
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.91 E-value=1.7e-23 Score=148.08 Aligned_cols=123 Identities=59% Similarity=0.904 Sum_probs=110.1
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |||+++|..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus 60 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 137 (186)
T 2bme_A 60 KLQIWD--TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLE 137 (186)
T ss_dssp EEEEEE--ECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEe--CCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHH
Confidence 566776 999999999999999999999999999999999999999999987766779999999999997767788899
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccccc
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~ 130 (163)
+..++...+++++++||+++.|++++|+++.+.+.+...+....+
T Consensus 138 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~ 182 (186)
T 2bme_A 138 ASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDP 182 (186)
T ss_dssp HHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSCC---
T ss_pred HHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999999999999999999999999999999998877665443
No 14
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.91 E-value=2.3e-23 Score=144.73 Aligned_cols=115 Identities=26% Similarity=0.330 Sum_probs=88.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.+++|| |+|+++|..++..+++.+|++++|||++++.+|..+..|+..+.... ..++|+++|+||+|+.+.+.+..+
T Consensus 50 ~~~i~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 127 (166)
T 3q72_A 50 SLMVYD--IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVD 127 (166)
T ss_dssp EEEEEE--CC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHH
T ss_pred EEEEEE--CCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHH
Confidence 345555 99999999999999999999999999999999999999999997753 257999999999999888889999
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
++..++...+++++++||+++.|++++|+++.+.+.++
T Consensus 128 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 128 EGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999988764
No 15
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.91 E-value=2.7e-23 Score=147.84 Aligned_cols=118 Identities=39% Similarity=0.723 Sum_probs=107.2
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..+.||| |+|+++|..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+..+
T Consensus 71 ~~~~l~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 148 (189)
T 2gf9_A 71 IKLQIWD--TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAE 148 (189)
T ss_dssp EEEEEEE--CCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEe--CCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHH
Confidence 3566666 99999999999999999999999999999999999999999998876567999999999999877778888
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
++..+++.++++++++||+++.|++++|++|.+.+.++.+
T Consensus 149 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 188 (189)
T 2gf9_A 149 DGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN 188 (189)
T ss_dssp HHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999887653
No 16
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.91 E-value=3.8e-23 Score=148.49 Aligned_cols=120 Identities=40% Similarity=0.712 Sum_probs=109.3
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..++||| |||+++|..++..+++++|++|+|||+++..+|..+..|+..+......+.|+++|+||+|+.+.+.+..+
T Consensus 57 ~~~~l~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 134 (203)
T 1zbd_A 57 IKLQIWD--TAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSE 134 (203)
T ss_dssp EEEEEEE--ECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHH
T ss_pred EEEEEEE--CCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHH
Confidence 3566676 99999999999999999999999999999999999999999998876567999999999999887788889
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~ 126 (163)
++..+++.++++++++||+++.||+++|++|.+.+.+...+.
T Consensus 135 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 135 RGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999998876654
No 17
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=2.1e-23 Score=151.90 Aligned_cols=121 Identities=26% Similarity=0.286 Sum_probs=103.3
Q ss_pred ccceeeEeeecccchhh-hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCc
Q 031249 3 FSQESFFWSLLQAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~-~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~ 80 (163)
++..+++..|||+|++. +..+...|++.+|++|+|||+++..+|+.+..|+..+.+.. ..++|++||+||+|+.+.+.
T Consensus 83 ~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~ 162 (211)
T 2g3y_A 83 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCRE 162 (211)
T ss_dssp TTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC
T ss_pred CCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCce
Confidence 34555555566999887 56677889999999999999999999999999998887542 24699999999999977677
Q ss_pred cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 81 VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
+..+++..++..++++++++||+++.||+++|++|++.+....
T Consensus 163 v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 163 VSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp SCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 8888888899999999999999999999999999999886544
No 18
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.91 E-value=5.6e-23 Score=144.35 Aligned_cols=120 Identities=37% Similarity=0.656 Sum_probs=108.7
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..+.||| |||++++..++..+++++|++|+|||++++.++..+..|+..+.... ++.|+++|+||+|+.+.+.+..+
T Consensus 58 ~~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~ 134 (181)
T 3tw8_B 58 VKLQIWD--TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETE 134 (181)
T ss_dssp EEEEEEE--ETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEc--CCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHH
Confidence 3466666 99999999999999999999999999999999999999999998765 57999999999999887788889
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 127 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~ 127 (163)
++..++...+++++++||+++.|++++|++|.+.+.+...+..
T Consensus 135 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~ 177 (181)
T 3tw8_B 135 DAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 177 (181)
T ss_dssp HHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999988766554
No 19
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.91 E-value=3.5e-23 Score=145.68 Aligned_cols=115 Identities=41% Similarity=0.773 Sum_probs=104.1
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |||+++|..++..+++++|++|+|||+++..+|..+..|+..+.....++.|+++|+||+|+.+.+.+..++
T Consensus 62 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~ 139 (181)
T 2efe_B 62 KFEIWD--TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAED 139 (181)
T ss_dssp EEEEEE--CCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHH
T ss_pred EEEEEe--CCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHH
Confidence 566666 999999999999999999999999999999999999999999988766679999999999998777788899
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
+..+++..+++++++||+++.|++++|++|.+.+.+.
T Consensus 140 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 140 AQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998876544
No 20
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.90 E-value=3.6e-23 Score=145.12 Aligned_cols=114 Identities=66% Similarity=1.045 Sum_probs=104.1
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+.||| |||++++..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus 65 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 142 (179)
T 1z0f_A 65 KLQIWD--TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEE 142 (179)
T ss_dssp EEEEEE--CTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEE--CCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHH
Confidence 556666 999999999999999999999999999999999999999999988776789999999999997777788899
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+..+++.++++++++||+++.|++++|++|.+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 143 AKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999987754
No 21
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=4.1e-23 Score=145.19 Aligned_cols=115 Identities=43% Similarity=0.790 Sum_probs=96.9
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |||+++|..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus 61 ~~~~~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 138 (180)
T 2g6b_A 61 KLQMWD--TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKRED 138 (180)
T ss_dssp EEEEEE--CCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHH
T ss_pred EEEEEe--CCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHH
Confidence 556666 999999999999999999999999999999999999999999988766679999999999998877788889
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
+..+++..+++++++||+++.|++++|+++.+.+.++
T Consensus 139 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 139 GEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887643
No 22
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.90 E-value=5.9e-23 Score=142.87 Aligned_cols=114 Identities=45% Similarity=0.808 Sum_probs=103.0
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+.||| |||++++..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+ ..+.+..++
T Consensus 53 ~~~l~D--~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~ 129 (170)
T 1g16_A 53 KLQIWD--TAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQ 129 (170)
T ss_dssp EEEEEC--CTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHH
T ss_pred EEEEEe--CCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHH
Confidence 455555 99999999999999999999999999999999999999999998877667999999999999 445677888
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
+..+++..+++++++||+++.|++++|++|.+.+.++
T Consensus 130 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 130 GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988764
No 23
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=8.7e-23 Score=147.36 Aligned_cols=119 Identities=43% Similarity=0.789 Sum_probs=106.2
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |||+++|..++..+++++|++|+|||+++..+|..+..|+..+......+.|+++|+||+|+ ..+.+..++
T Consensus 70 ~~~l~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~ 146 (213)
T 3cph_A 70 KLQLWD--TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQ 146 (213)
T ss_dssp EEEEEC--CTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHH
T ss_pred EEEEEe--CCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHH
Confidence 455666 99999999999999999999999999999999999999999998876567999999999999 446677888
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 127 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~ 127 (163)
+..++..++++++++||+++.||+++|++|.+.+.+......
T Consensus 147 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~ 188 (213)
T 3cph_A 147 GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNK 188 (213)
T ss_dssp HHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 899999999999999999999999999999999888765444
No 24
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.90 E-value=3.9e-23 Score=148.27 Aligned_cols=118 Identities=26% Similarity=0.316 Sum_probs=102.8
Q ss_pred cceeeEeeecccchhhhhh-chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249 4 SQESFFWSLLQAGQESFRS-ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~-~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v 81 (163)
+..+.+..|||+|++++.. ++..+++++|++|+|||+++..+|..+..|+..+..... .+.|++||+||+|+.+.+.+
T Consensus 69 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v 148 (195)
T 3cbq_A 69 KEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREV 148 (195)
T ss_dssp TEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCS
T ss_pred CEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCc
Confidence 3344444444999998875 888899999999999999999999999999999987653 46999999999999877788
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
..+++..++...+++++++||+++.||+++|+++++.+.+
T Consensus 149 ~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 149 SLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp CHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999988754
No 25
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.90 E-value=5.2e-24 Score=154.07 Aligned_cols=117 Identities=30% Similarity=0.591 Sum_probs=98.5
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCCc----
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRA---- 80 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~---- 80 (163)
.++||| |||+++|..++..+++++|++|+|||++++.+|..+. .|+..+.... ++.|++||+||+|+.+.+.
T Consensus 58 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 134 (212)
T 2j0v_A 58 NLGLWD--TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLAD 134 (212)
T ss_dssp EEEEEC--CCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHT
T ss_pred EEEEEE--CCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCcccccc
Confidence 556666 9999999999999999999999999999999999987 7999998765 4799999999999865433
Q ss_pred ----cCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249 81 ----VSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 81 ----v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
+..+++..++..++. +++++||+++.||+++|++|++.+.+...+
T Consensus 135 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 135 HTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp CSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC---
T ss_pred ccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhhh
Confidence 377888899999996 899999999999999999999988765433
No 26
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.90 E-value=2.5e-23 Score=144.97 Aligned_cols=113 Identities=34% Similarity=0.674 Sum_probs=96.0
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+.||| |||++++..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus 56 ~l~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 133 (170)
T 1z08_A 56 NLAIWD--TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQE 133 (170)
T ss_dssp EEEEEE--CCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEE--CCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHH
Confidence 455555 999999999999999999999999999999999999999999877655579999999999998777788899
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+..+++..+++++++||+++.|++++|++|.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 134 AESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998875
No 27
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.90 E-value=5.4e-23 Score=145.20 Aligned_cols=113 Identities=29% Similarity=0.520 Sum_probs=103.0
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
++||| |+|+++|..++..+++++|++|+|||+++..+|..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++
T Consensus 68 l~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~ 145 (183)
T 3kkq_A 68 LDVLD--TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQ 145 (183)
T ss_dssp EEEEE--CCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHH
T ss_pred EEEEE--CCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHH
Confidence 44566 99999999999999999999999999999999999999999986643 3578999999999998878899999
Q ss_pred HHHHHHHcCCeEEEEcCC-CCCCHHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASAR-TAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~-~~~~i~~lf~~l~~~~~~ 121 (163)
+..+++.++++++++||+ ++.||+++|++|.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 146 GKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999 999999999999988764
No 28
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.90 E-value=3.6e-23 Score=144.13 Aligned_cols=119 Identities=26% Similarity=0.317 Sum_probs=98.8
Q ss_pred cceeeEeeecccchhhhhh-chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249 4 SQESFFWSLLQAGQESFRS-ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~-~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v 81 (163)
+..+.+..|||+|++++.. ++..+++++|++++|||++++.+|..+..|+..+..... .++|+++|+||+|+.+.+.+
T Consensus 48 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 127 (169)
T 3q85_A 48 KEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREV 127 (169)
T ss_dssp TEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCS
T ss_pred CeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccC
Confidence 3344444444999999987 788889999999999999999999999999999987654 47999999999999877889
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
..+++..+++..+++++++||+++.|++++|+++++.+..+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 128 SLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp CHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999987653
No 29
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.90 E-value=1.1e-22 Score=144.23 Aligned_cols=120 Identities=33% Similarity=0.624 Sum_probs=108.1
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
..++||| |||+++|..++..+++++|++|+|||+++..++..+..|+..+..... .+.|+++|+||+|+.+.+.+..
T Consensus 70 ~~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 147 (195)
T 3bc1_A 70 IHLQLWD--TAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKE 147 (195)
T ss_dssp EEEEEEE--ECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCH
T ss_pred EEEEEEe--CCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH
Confidence 3566666 999999999999999999999999999999999999999999987664 5789999999999977677888
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249 84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~ 126 (163)
+++..++...+++++++||+++.|++++|++|.+.+.++....
T Consensus 148 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 190 (195)
T 3bc1_A 148 EEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERS 190 (195)
T ss_dssp HHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999998776543
No 30
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.90 E-value=2.8e-23 Score=146.46 Aligned_cols=116 Identities=28% Similarity=0.380 Sum_probs=103.2
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.++||| |||+++|..++..+++++|++++|||+++..+|+.+..|+..+.+... .+.|+++|+||+|+.+.+.+..+
T Consensus 55 ~~~l~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 132 (181)
T 3t5g_A 55 HLQLVD--TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYE 132 (181)
T ss_dssp EEEEEE--CCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHH
T ss_pred EEEEEe--CCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHH
Confidence 445666 999999999999999999999999999999999999999999876643 46899999999999888889999
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
++..+++.++++++++||+++.|++++|++|++.+.+..
T Consensus 133 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 133 EGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999876543
No 31
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=142.31 Aligned_cols=118 Identities=29% Similarity=0.333 Sum_probs=97.0
Q ss_pred eeeEeeecccchhh--hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249 6 ESFFWSLLQAGQES--FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~--~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
.+++|| |+|+++ +..++..+++.+|++++|||+++..+|..+..|+..+.... ..+.|+++|+||+|+.+.+++.
T Consensus 53 ~~~~~D--~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~ 130 (175)
T 2nzj_A 53 TLVVVD--TWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVS 130 (175)
T ss_dssp EEEEEC--CC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSC
T ss_pred EEEEEe--cCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccC
Confidence 455666 999988 66778889999999999999999999999999999887753 2468999999999998777888
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249 83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
.+++..++..++++++++||+++.||+++|++|.+.+.++...
T Consensus 131 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 173 (175)
T 2nzj_A 131 VEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRD 173 (175)
T ss_dssp HHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhhcc
Confidence 8888899999999999999999999999999999988765443
No 32
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.90 E-value=5.7e-23 Score=146.47 Aligned_cols=118 Identities=45% Similarity=0.796 Sum_probs=106.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |||+++|..++..+++++|++|||||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus 75 ~~~i~D--t~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 152 (193)
T 2oil_A 75 KAQIWD--TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEE 152 (193)
T ss_dssp EEEEEE--ESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEe--CCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHH
Confidence 455666 999999999999999999999999999999999999999999987665679999999999997767788899
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
+..++...+++++++||+++.|++++|++|.+.+.++..+
T Consensus 153 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 192 (193)
T 2oil_A 153 ARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 192 (193)
T ss_dssp HHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999876543
No 33
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.90 E-value=1.7e-22 Score=142.98 Aligned_cols=119 Identities=29% Similarity=0.543 Sum_probs=103.3
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHHH
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
++||| |||++++..++..+++++|++++|||+++..+|..+..|+..+..... .+.|+++|+||+|+.+ +.+..++
T Consensus 54 ~~i~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~ 130 (189)
T 4dsu_A 54 LDILD--TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQ 130 (189)
T ss_dssp EEEEE--CCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHH
T ss_pred EEEEE--CCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHH
Confidence 45566 999999999999999999999999999999999999999999977543 5799999999999974 5677889
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 128 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~ 128 (163)
+..++..++++++++||+++.|++++|++|.+.+.+...+...
T Consensus 131 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~~ 173 (189)
T 4dsu_A 131 AQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSK 173 (189)
T ss_dssp HHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhhhccc
Confidence 9999999999999999999999999999999999887766543
No 34
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.90 E-value=6.4e-23 Score=147.32 Aligned_cols=121 Identities=26% Similarity=0.490 Sum_probs=98.8
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCC-CCc
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAH-RRA 80 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ilv~nK~D~~~-~~~ 80 (163)
..++||| |||+++|..++..+++++|++|+|||+++..+|..+..|+..+..... .+.|+++|+||+|+.+ .+.
T Consensus 73 ~~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~ 150 (208)
T 2yc2_C 73 VELFLLD--TAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ 150 (208)
T ss_dssp EEEEEEE--TTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------C
T ss_pred EEEEEEE--CCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhcc
Confidence 3566676 999999999999999999999999999999999999999999988765 5799999999999987 677
Q ss_pred cCHHHHHHHHHHcCCeEEEEcCCC-CCCHHHHHHHHHHHHHHHHhhcc
Q 031249 81 VSKEEGEQFAKENGLLFLEASART-AQNVEEAFIKTAAKILQNIQEGA 127 (163)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~~lf~~l~~~~~~~~~~~~ 127 (163)
+..+++..+++.++++++++||++ +.|++++|++|.+.+.+...+..
T Consensus 151 v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~~~ 198 (208)
T 2yc2_C 151 VRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKV 198 (208)
T ss_dssp CCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHHHhhH
Confidence 888999999999999999999999 99999999999999987766544
No 35
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.90 E-value=2.5e-23 Score=149.53 Aligned_cols=119 Identities=29% Similarity=0.443 Sum_probs=103.1
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.++||| |||+++|..++..+++++|++|+|||+++..+|..+..|+..+..... .++|++||+||+|+.+.+.+...
T Consensus 73 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~ 150 (201)
T 3oes_A 73 HLHLVD--TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAV 150 (201)
T ss_dssp EEEEEE--ECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEE--CCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHH
Confidence 445666 999999999999999999999999999999999999999999976533 46899999999999887888999
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~ 126 (163)
++..++..++++++++||+++.||+++|++|.+.+.+.....
T Consensus 151 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~~ 192 (201)
T 3oes_A 151 EGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSY 192 (201)
T ss_dssp HHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999987765443
No 36
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.90 E-value=4e-23 Score=150.23 Aligned_cols=116 Identities=28% Similarity=0.505 Sum_probs=102.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHR------ 78 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~------ 78 (163)
.++||| |+|+++|..++..+++++|++|+|||+++..+|.. +..|+..+.... ++.|++||+||+|+.++
T Consensus 76 ~l~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~ 152 (214)
T 3q3j_B 76 ELSLWD--TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLME 152 (214)
T ss_dssp EEEEEE--ECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHH
T ss_pred EEEEEE--CCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhh
Confidence 456666 99999999999999999999999999999999998 688999998875 57999999999999653
Q ss_pred ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCC-HHHHHHHHHHHHHHHHh
Q 031249 79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQN-VEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~lf~~l~~~~~~~~~ 124 (163)
+.+..+++..+++.+++ +++++||+++.| |+++|+++++.+.....
T Consensus 153 ~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 153 LSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred hcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 66889999999999999 899999999998 99999999998876544
No 37
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.90 E-value=7.4e-23 Score=142.25 Aligned_cols=113 Identities=44% Similarity=0.793 Sum_probs=102.8
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..++||| |||+++|..++..+++++|++|+|||+++..++..+..|+..+.....++.|+++|+||+|+.+.+.+..+
T Consensus 55 ~~~~~~D--~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~ 132 (170)
T 1r2q_A 55 VKFEIWD--TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132 (170)
T ss_dssp EEEEEEE--ECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEe--CCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHH
Confidence 3566676 99999999999999999999999999999999999999999998876678999999999999776778888
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
++..++...+++++++||+++.|++++|++|.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999998754
No 38
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.90 E-value=5.8e-23 Score=149.06 Aligned_cols=121 Identities=34% Similarity=0.636 Sum_probs=107.6
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
..++||| |+|+++|..++..+++++|++|||||+++..++..+..|+..+..... .++|++||+||+|+.+.+.+..
T Consensus 84 ~~l~l~D--t~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~ 161 (217)
T 2f7s_A 84 VHLQLWD--TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE 161 (217)
T ss_dssp EEEEEEE--EESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCH
T ss_pred EEEEEEE--CCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCH
Confidence 4566676 999999999999999999999999999999999999999988865543 5689999999999987777888
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249 84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 127 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~ 127 (163)
+++..++...+++++++||+++.||+++|++|.+.+.++.....
T Consensus 162 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~ 205 (217)
T 2f7s_A 162 RQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCV 205 (217)
T ss_dssp HHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999988765433
No 39
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.90 E-value=5.5e-23 Score=146.83 Aligned_cols=115 Identities=43% Similarity=0.775 Sum_probs=103.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |+|+++|..++..+++++|++|+|||+++..+++.+..|+..+......+.|++||+||+|+.+.+++..++
T Consensus 76 ~l~l~D--t~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~ 153 (192)
T 2il1_A 76 RLQIWD--TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQ 153 (192)
T ss_dssp EEEEEE--ECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEe--CCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHH
Confidence 456666 999999999999999999999999999999999999999999988766679999999999998777788888
Q ss_pred HHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 86 GEQFAKEN-GLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 86 ~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
+..+++.. +++++++||+++.||+++|++|.+.+.++
T Consensus 154 ~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 154 GEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 98898874 78899999999999999999999988653
No 40
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=2.3e-23 Score=148.83 Aligned_cols=112 Identities=26% Similarity=0.378 Sum_probs=98.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCCCCccCH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
.+.||| |||+++|..++..+++++|++|+|||+++..++..+..|+..+..... ++.|+++|+||+|+.+ +.+..
T Consensus 57 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~ 133 (199)
T 2gf0_A 57 TLQITD--TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDT 133 (199)
T ss_dssp EEEEEE--CCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCH
T ss_pred EEEEEe--CCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCH
Confidence 456666 999999999999999999999999999999999999888888866543 3689999999999965 56778
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+++..++..++++++++||+++.||+++|++|.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 134 REAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp HHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 8888899999999999999999999999999987653
No 41
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.89 E-value=1.2e-22 Score=142.59 Aligned_cols=117 Identities=30% Similarity=0.505 Sum_probs=104.5
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.+.||| |+|+++|..++..+++++|++++|||+++..++..+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..+
T Consensus 58 ~~~~~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~ 135 (181)
T 2fn4_A 58 RLDILD--TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRS 135 (181)
T ss_dssp EEEEEE--CCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEE--CCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence 455666 99999999999999999999999999999999999999999985443 357899999999999877778889
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
++..++...+++++++||+++.|++++|++|.+.+.+...
T Consensus 136 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 136 EASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999876554
No 42
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.89 E-value=2.2e-22 Score=139.95 Aligned_cols=113 Identities=40% Similarity=0.807 Sum_probs=103.2
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..+.||| |||++++..++..+++++|++|+|||+++..++..+..|+..+.....+..|+++|+||+|+.+.+++..+
T Consensus 55 ~~~~~~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~ 132 (170)
T 1z0j_A 55 HKFLIWD--TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMER 132 (170)
T ss_dssp EEEEEEE--ECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEc--CCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHH
Confidence 3566666 99999999999999999999999999999999999999999998876678999999999999877778888
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
++..++...+++++++||+++.|++++|++|.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 133 DAKDYADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp HHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999998765
No 43
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.89 E-value=1.5e-22 Score=142.83 Aligned_cols=118 Identities=32% Similarity=0.493 Sum_probs=106.4
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.+.||| |||+++|..++..+++.+|++|+|||+++..++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+
T Consensus 67 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 144 (187)
T 2a9k_A 67 QIDILD--TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVE 144 (187)
T ss_dssp EEEEEE--CCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEE--CCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHH
Confidence 456666 999999999999999999999999999999999999999999987664 47999999999999776778889
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
++..+++.++++++++||+++.||+++|++|.+.+.++..+
T Consensus 145 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 185 (187)
T 2a9k_A 145 EAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 185 (187)
T ss_dssp HHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999998876543
No 44
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.89 E-value=9.1e-23 Score=141.37 Aligned_cols=114 Identities=32% Similarity=0.506 Sum_probs=100.5
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.+.||| |||++++..++..+++.+|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+.+.+++..+
T Consensus 53 ~~~l~D--~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 130 (168)
T 1u8z_A 53 QIDILD--TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVE 130 (168)
T ss_dssp EEEEEE--CCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEE--CCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHH
Confidence 456666 999999999999999999999999999999999999999999987654 47999999999999877778889
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
++..+++.++++++++||+++.|++++|+++.+.+.+
T Consensus 131 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 131 EAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988753
No 45
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=8.1e-23 Score=145.87 Aligned_cols=115 Identities=37% Similarity=0.739 Sum_probs=103.9
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..++||| |||+++|..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+..+
T Consensus 72 ~~~~i~D--t~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~ 149 (192)
T 2fg5_A 72 HKFLIWD--TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLK 149 (192)
T ss_dssp EEEEEEE--ECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEc--CCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHH
Confidence 3566666 99999999999999999999999999999999999999999998876667999999999999776778889
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
++..+++..+++++++||+++.||+++|++|.+.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 150 DAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred HHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999887643
No 46
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.89 E-value=6.1e-23 Score=144.07 Aligned_cols=115 Identities=36% Similarity=0.529 Sum_probs=101.2
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCe-EEEEeeCCCCCCCCcc
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMS-IMLVGNKCDLAHRRAV 81 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p-~ilv~nK~D~~~~~~v 81 (163)
..++||| |||+++|..++..+++++|++|+|||++++.+++.+..|+..+..... ...| +++|+||+|+.+.+.+
T Consensus 56 ~~~~~~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~ 133 (178)
T 2hxs_A 56 VTLQIWD--IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTI 133 (178)
T ss_dssp EEEEEEE--CTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS
T ss_pred EEEEEEE--CCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccccc
Confidence 4667777 999999999999999999999999999999999999999998876432 2345 8999999999776778
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
..+++..+++..+++++++||+++.||+++|++|.+.+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 134 KPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999987754
No 47
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.89 E-value=2.8e-22 Score=143.07 Aligned_cols=113 Identities=27% Similarity=0.531 Sum_probs=100.7
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC--CccCH
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR--RAVSK 83 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~~--~~v~~ 83 (163)
++||| |||+++|..++..+++++|++|+|||+++..+|..+ ..|+..+.... ++.|++||+||+|+.+. +.+..
T Consensus 73 ~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~ 149 (194)
T 3reg_A 73 LHLWD--TAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTK 149 (194)
T ss_dssp EEEEE--ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCH
T ss_pred EEEEE--CCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccH
Confidence 46666 999999999999999999999999999999999997 66888887654 56999999999998753 66888
Q ss_pred HHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 84 EEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
+++..+++.+++. ++++||+++.||+++|++|++.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 150 QEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999998 99999999999999999999887643
No 48
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.89 E-value=2.5e-22 Score=143.98 Aligned_cols=116 Identities=27% Similarity=0.457 Sum_probs=102.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC-------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH------- 77 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~------- 77 (163)
.++||| |+|+++|..++..+++++|++|+|||+++..+|..+. .|+..+.... ++.|++||+||+|+.+
T Consensus 69 ~~~i~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~ 145 (201)
T 2q3h_A 69 RLQLCD--TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIE 145 (201)
T ss_dssp EEEEEE--CCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHH
T ss_pred EEEEEE--CCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhh
Confidence 455676 9999999999999999999999999999999999987 6999888765 4799999999999865
Q ss_pred -----CCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 78 -----RRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 78 -----~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
.+.+..+++..++..++. +++++||+++.||+++|++|++.+.+...
T Consensus 146 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 146 LDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp HHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred hcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 256778889999999887 89999999999999999999999887654
No 49
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.89 E-value=9.5e-23 Score=145.09 Aligned_cols=115 Identities=21% Similarity=0.283 Sum_probs=99.9
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECC------ChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDIT------RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 79 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~ 79 (163)
.++||| |||+++|..++..+++++|++|+|||++ +..+|..+..|+..+.. ...+.|++||+||+|+.+
T Consensus 75 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~-- 149 (198)
T 3t1o_A 75 RFHLYT--VPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD-- 149 (198)
T ss_dssp EEEEEE--CCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT--
T ss_pred EEEEEe--CCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc--
Confidence 456666 9999999999999999999999999999 56778888888888733 236799999999999965
Q ss_pred ccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249 80 AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 80 ~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
.+..+++..++...++ +++++||+++.||+++|++|.+.+.++..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 150 ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 4788999999999999 899999999999999999999999887654
No 50
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.89 E-value=2.5e-22 Score=142.77 Aligned_cols=112 Identities=14% Similarity=0.298 Sum_probs=98.0
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCC--CCCccC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLA--HRRAVS 82 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~--~~~~v~ 82 (163)
.++||| |+|+++|. +++++|++++|||+++..+|+.+..|+..+..... .+.|++||+||+|+. ..+.+.
T Consensus 68 ~l~i~D--t~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~ 140 (184)
T 3ihw_A 68 LLLIRD--EGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVID 140 (184)
T ss_dssp EEEEEE--CSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSC
T ss_pred EEEEEE--CCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccC
Confidence 445566 99999887 88899999999999999999999999999987653 468999999999984 456788
Q ss_pred HHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 83 KEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 83 ~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
.+++..++..++ ++++++||+++.||+++|+++++.+.+...
T Consensus 141 ~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 141 DSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRK 183 (184)
T ss_dssp HHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999987 889999999999999999999999887643
No 51
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=5e-22 Score=141.66 Aligned_cols=112 Identities=25% Similarity=0.493 Sum_probs=99.9
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------ 78 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------ 78 (163)
.++||| |+|+++|..++..+++++|++|+|||++++.+|..+. .|+..+.... ++.|+++|+||+|+.+.
T Consensus 67 ~~~i~D--~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 143 (194)
T 2atx_A 67 LLGLYD--TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLAR 143 (194)
T ss_dssp EEEEEC--CCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHH
T ss_pred EEEEEE--CCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhh
Confidence 456666 9999999999999999999999999999999999987 7999988765 46899999999999653
Q ss_pred ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+.+..+++..+++.+++ +++++||+++.||+++|++|.+.++
T Consensus 144 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 144 LNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 46788899999999998 8999999999999999999998775
No 52
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=1.8e-22 Score=140.31 Aligned_cols=112 Identities=43% Similarity=0.776 Sum_probs=101.5
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC---CccC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR---RAVS 82 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~---~~v~ 82 (163)
.++||| |||++++..++..+++++|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+. +++.
T Consensus 53 ~~~~~D--~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~ 130 (170)
T 1ek0_A 53 KFEIWD--TAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVA 130 (170)
T ss_dssp EEEEEE--ECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSC
T ss_pred EEEEEE--CCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCC
Confidence 566676 99999999999999999999999999999999999999999998876677999999999998654 6678
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.+++..++...+++++++||+++.|++++|++|.+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 131 REEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 8889999999999999999999999999999997654
No 53
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.89 E-value=7.2e-23 Score=145.76 Aligned_cols=113 Identities=31% Similarity=0.436 Sum_probs=97.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCCCCccC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ilv~nK~D~~~~~~v~ 82 (163)
.++||| |+|+++|..+ ..+++++|++|+|||+++..+|..+..|+..+..... .+.|++||+||+|+.+.+.+.
T Consensus 70 ~l~i~D--t~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~ 146 (187)
T 3c5c_A 70 HLRVMD--TADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVT 146 (187)
T ss_dssp EEEEEE--CCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSC
T ss_pred EEEEEE--CCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccC
Confidence 456666 9999999885 6799999999999999999999999999999877632 468999999999997777888
Q ss_pred HHHHHHHHHHcCCeEEEEcC-CCCCCHHHHHHHHHHHHHH
Q 031249 83 KEEGEQFAKENGLLFLEASA-RTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~lf~~l~~~~~~ 121 (163)
.+++..+++.++++++++|| +++.||+++|+++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 147 KAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence 99999999999999999999 8999999999999988753
No 54
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.89 E-value=1.8e-22 Score=140.15 Aligned_cols=113 Identities=40% Similarity=0.624 Sum_probs=102.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+.||| |||++++..++..+++++|++++|||+++..+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++
T Consensus 55 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~ 131 (168)
T 1z2a_A 55 RLMLWD--TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEE 131 (168)
T ss_dssp EEEEEC--CTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHH
T ss_pred EEEEEc--CCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHH
Confidence 456666 99999999999999999999999999999999999999999997765 568999999999998767788899
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+..+++..+++++++||+++.|++++|++|.+.+.+
T Consensus 132 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 132 AEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999987753
No 55
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.89 E-value=1.3e-22 Score=142.30 Aligned_cols=113 Identities=44% Similarity=0.734 Sum_probs=102.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+.||| |||+++|..++..+++++|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus 64 ~~~~~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 141 (179)
T 2y8e_A 64 RLQLWD--TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE 141 (179)
T ss_dssp EEEEEE--ECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEE--CCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHH
Confidence 456666 999999999999999999999999999999999999999999987765679999999999998777788899
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+..++...+++++++||+++.|++++|++|.+.+.
T Consensus 142 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 142 GERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp HHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999987653
No 56
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.89 E-value=2.8e-22 Score=139.07 Aligned_cols=113 Identities=35% Similarity=0.559 Sum_probs=101.2
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.++||| |||++++..++..+++++|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+
T Consensus 52 ~~~l~D--~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 129 (167)
T 1c1y_A 52 MLEILD--TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKE 129 (167)
T ss_dssp EEEEEE--ECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEE--CCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHH
Confidence 456666 999999999999999999999999999999999999999999877543 57999999999999877778889
Q ss_pred HHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 85 EGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 85 ~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
++..+++.+ +.+++++||+++.|++++|++|.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 130 QGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 999999887 789999999999999999999988763
No 57
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=146.14 Aligned_cols=113 Identities=39% Similarity=0.674 Sum_probs=100.0
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC------CCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA------HRR 79 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~------~~~ 79 (163)
.++||| |||+++|..++..+++++|++|||||+++..++..+..|+..+......+.|++||+||+|+. ..+
T Consensus 78 ~l~i~D--t~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~ 155 (199)
T 2p5s_A 78 VLQLWD--TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQK 155 (199)
T ss_dssp EEEEEE--CTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCC
T ss_pred EEEEEE--CCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccccccccc
Confidence 456666 999999999999999999999999999999999999999999987765679999999999985 346
Q ss_pred ccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 80 AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
.+..+++..++...+++++++||+++.||+++|++|++.+.
T Consensus 156 ~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 156 CVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp CCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 67888899999999999999999999999999999998775
No 58
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.89 E-value=3.5e-22 Score=142.04 Aligned_cols=114 Identities=35% Similarity=0.697 Sum_probs=99.8
Q ss_pred eeeEeeecccchhhhh-hchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccCH
Q 031249 6 ESFFWSLLQAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~-~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
.++||| |||+++|. .++..+++++|++|||||+++..+|..+..|+..+.... ..+.|+++|+||+|+.+.+++..
T Consensus 70 ~~~l~D--t~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~ 147 (189)
T 1z06_A 70 KIQLWD--TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT 147 (189)
T ss_dssp EEEEEE--CCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCH
T ss_pred EEEEEE--CCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCH
Confidence 566666 99999998 899999999999999999999999999999999998765 35799999999999977777888
Q ss_pred HHHHHHHHHcCCeEEEEcCCCC---CCHHHHHHHHHHHHHH
Q 031249 84 EEGEQFAKENGLLFLEASARTA---QNVEEAFIKTAAKILQ 121 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~Sa~~~---~~i~~lf~~l~~~~~~ 121 (163)
+++..++...+++++++||+++ .+|+++|++|.+.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 148 DLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence 9999999999999999999999 9999999999887643
No 59
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.89 E-value=4.3e-22 Score=142.51 Aligned_cols=122 Identities=26% Similarity=0.297 Sum_probs=101.6
Q ss_pred ccceeeEeeecccchhh-hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCc
Q 031249 3 FSQESFFWSLLQAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~-~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~ 80 (163)
++..+++..|||+|++. +..++..|++.+|++++|||+++..+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.
T Consensus 52 ~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~ 131 (192)
T 2cjw_A 52 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXRE 131 (192)
T ss_dssp TTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC
T ss_pred CCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcccc
Confidence 34555555555999877 56688889999999999999999999999999998887653 25689999999999977677
Q ss_pred cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 81 VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
+..+++..++..++++++++||++|.||+++|+++++.+.....
T Consensus 132 v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~~ 175 (192)
T 2cjw_A 132 VSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRD 175 (192)
T ss_dssp SCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhcc
Confidence 88888888888899999999999999999999999998866543
No 60
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.88 E-value=7.6e-22 Score=138.68 Aligned_cols=114 Identities=16% Similarity=0.273 Sum_probs=96.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCC--CCCc
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLA--HRRA 80 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ilv~nK~D~~--~~~~ 80 (163)
.++||| |+|+++ ..+++++|++|+|||++++.+|..+..|+..+..... ++.|++||+||+|+. ..+.
T Consensus 55 ~l~i~D--t~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 127 (178)
T 2iwr_A 55 LVLIRE--EAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRV 127 (178)
T ss_dssp EEEEEE--CSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCC
T ss_pred EEEEEE--CCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCc
Confidence 456666 999987 5688999999999999999999999998776655432 578999999999983 4567
Q ss_pred cCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249 81 VSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126 (163)
Q Consensus 81 v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~ 126 (163)
+..+++..++... +++++++||+++.||+++|+++++.+.+...+.
T Consensus 128 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~ 174 (178)
T 2iwr_A 128 VGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ 174 (178)
T ss_dssp SCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHHhhh
Confidence 8889999998876 688999999999999999999999998776543
No 61
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.88 E-value=3.7e-22 Score=144.90 Aligned_cols=122 Identities=28% Similarity=0.426 Sum_probs=105.8
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..+.||| |+|++++..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+..+
T Consensus 61 ~~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 138 (218)
T 4djt_A 61 IKFNVWD--TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKK 138 (218)
T ss_dssp EEEEEEE--ECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHH
T ss_pred EEEEEEe--cCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHH
Confidence 3466777 99999999999999999999999999999999999999999998877667999999999999877778888
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 128 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~ 128 (163)
++..++...+++++++||+++.|++++|.+|.+.+.+.......
T Consensus 139 ~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~ 182 (218)
T 4djt_A 139 LVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFV 182 (218)
T ss_dssp HHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTCCBC
T ss_pred HHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcccccccc
Confidence 88899999999999999999999999999999988766544443
No 62
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.88 E-value=2e-21 Score=138.63 Aligned_cols=114 Identities=36% Similarity=0.631 Sum_probs=102.9
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..+.||| |||+++|..++..+++.+|++|+|||++++.++..+..|+..+..... .|+++|+||+| ...+.+..+
T Consensus 93 ~~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~~~~~~~ 167 (208)
T 3clv_A 93 IKFDIWD--TAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNKFQVDIL 167 (208)
T ss_dssp EEEEEEE--CTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-CCSCHH
T ss_pred eEEEEEE--CCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cccccCCHH
Confidence 5667777 999999999999999999999999999999999999999999987653 89999999999 455678889
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
++..++...+++++++||+++.|++++|++|.+.+.++.
T Consensus 168 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 168 EVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp HHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999887654
No 63
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.88 E-value=9.3e-22 Score=137.87 Aligned_cols=113 Identities=32% Similarity=0.639 Sum_probs=100.4
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCCCCcc
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ilv~nK~D~~~~~~v 81 (163)
.++||| |||++++..++..+++++|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+. .+.+
T Consensus 57 ~~~i~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~ 133 (177)
T 1wms_A 57 TMQIWD--TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQV 133 (177)
T ss_dssp EEEEEE--CCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSS
T ss_pred EEEEEe--CCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-cccc
Confidence 566666 999999999999999999999999999999999999999999877653 568999999999997 4567
Q ss_pred CHHHHHHHHH-HcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 82 SKEEGEQFAK-ENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
..+++..++. ..+++++++||+++.|++++|+++.+.+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 134 STEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp CHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 8888888888 567889999999999999999999988864
No 64
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=6.5e-22 Score=140.69 Aligned_cols=115 Identities=46% Similarity=0.802 Sum_probs=102.1
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
..+.||| |||+++|..++..+++++|++|||||+++..++..+..|+..+..... .+.|+++|+||+|+.+ +.+..
T Consensus 64 ~~~~i~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~ 140 (195)
T 1x3s_A 64 AKLAIWD--TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDR 140 (195)
T ss_dssp EEEEEEE--ECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCH
T ss_pred EEEEEEe--CCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCH
Confidence 3456666 999999999999999999999999999999999999999999876543 4689999999999954 56778
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
+++..++...+++++++||+++.||+++|++|.+.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 141 NEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 889999999999999999999999999999999988753
No 65
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.88 E-value=9.2e-22 Score=138.22 Aligned_cols=116 Identities=34% Similarity=0.603 Sum_probs=91.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCC-CCc
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAH-RRA 80 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ilv~nK~D~~~-~~~ 80 (163)
.++||| |||+++|..++..+++++|++|+|||+++..++..+..|+..+..... .+.|+++|+||+|+.+ .+.
T Consensus 59 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 136 (182)
T 1ky3_A 59 TMQVWD--TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI 136 (182)
T ss_dssp EEEEEC--CC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC
T ss_pred EEEEEE--CCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccccc
Confidence 566676 999999999999999999999999999999999999999999877653 5689999999999854 345
Q ss_pred cCHHHHHHHHH-HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 81 VSKEEGEQFAK-ENGLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 81 v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
+..+++..++. ..+.+++++||+++.||+++|++|.+.+.++.
T Consensus 137 v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 137 VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp SCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 67888888887 56788999999999999999999999887654
No 66
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.88 E-value=3.2e-22 Score=138.51 Aligned_cols=114 Identities=29% Similarity=0.483 Sum_probs=102.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.++||| |||++++..++..+++++|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+.+.+++..+
T Consensus 52 ~~~l~D--~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 129 (167)
T 1kao_A 52 VLEILD--TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSS 129 (167)
T ss_dssp EEEEEE--CCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEE--CCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHH
Confidence 366676 999999999999999999999999999999999999999998877643 57999999999999777778888
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
++..++...+++++++||+++.|++++|++|.+.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 130 EGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999987753
No 67
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.88 E-value=4.2e-22 Score=141.14 Aligned_cols=113 Identities=27% Similarity=0.531 Sum_probs=99.2
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------ 78 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~~------ 78 (163)
.++||| |||+++|..++..+++++|++|+|||++++.+|..+ ..|+..+.... ++.|+++|+||+|+.++
T Consensus 56 ~~~i~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~ 132 (184)
T 1m7b_A 56 ELSLWD--TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVE 132 (184)
T ss_dssp EEEEEE--ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHH
T ss_pred EEEEEE--CCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhh
Confidence 456666 999999999999999999999999999999999998 67988887765 57899999999998642
Q ss_pred ------CccCHHHHHHHHHHcC-CeEEEEcCC-CCCCHHHHHHHHHHHHHH
Q 031249 79 ------RAVSKEEGEQFAKENG-LLFLEASAR-TAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 79 ------~~v~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~lf~~l~~~~~~ 121 (163)
+.+..+++..+++.++ .+++++||+ ++.||+++|+++.+.+++
T Consensus 133 ~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 133 LSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp HHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred hhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 5678889999999887 689999999 689999999999988763
No 68
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.88 E-value=1.8e-21 Score=139.89 Aligned_cols=113 Identities=31% Similarity=0.544 Sum_probs=99.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------ 78 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~~------ 78 (163)
.++||| |||+++|..++..+++++|++|+|||+++..+|..+ ..|+..+.... ++.|+++|+||+|+.+.
T Consensus 74 ~l~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 150 (201)
T 2gco_A 74 ELALWD--TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRE 150 (201)
T ss_dssp EEEEEC--CCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHH
T ss_pred EEEEEE--CCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhh
Confidence 455666 999999999999999999999999999999999998 56888887754 56899999999998764
Q ss_pred ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+.+..+++..++...+. +++++||+++.||+++|++|.+.+++
T Consensus 151 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 151 LAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp HHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred hcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 45778889999999988 79999999999999999999987753
No 69
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.87 E-value=3.7e-22 Score=140.51 Aligned_cols=112 Identities=28% Similarity=0.581 Sum_probs=96.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCCc----
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRA---- 80 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~---- 80 (163)
.++||| |||+++|..++..+++++|++|+|||++++.+|..+. .|+..+.... ++.|+++|+||+|+.+.+.
T Consensus 57 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 133 (182)
T 3bwd_D 57 NLGLWD--TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFID 133 (182)
T ss_dssp -CEEEC--CCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHH
T ss_pred EEEEEE--CCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccc
Confidence 344666 9999999999999999999999999999999999987 6998888765 4789999999999865433
Q ss_pred ------cCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 81 ------VSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 81 ------v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+..+++..++..++. +++++||+++.||+++|+++.+.+.
T Consensus 134 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 134 HPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp C--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred cccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 477888899999996 8999999999999999999988764
No 70
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.87 E-value=3.2e-21 Score=136.92 Aligned_cols=117 Identities=32% Similarity=0.541 Sum_probs=92.4
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.+.||| |+|+++|..++..+++.+|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+.+ +.+..+
T Consensus 70 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~ 146 (190)
T 3con_A 70 LLDILD--TAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTK 146 (190)
T ss_dssp EEEEEE--CCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHH
T ss_pred EEEEEE--CCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHH
Confidence 356666 999999999999999999999999999999999999999999877653 4689999999999876 567788
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
++..+++.++++++++||+++.|++++|++|.+.+.+...+
T Consensus 147 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 187 (190)
T 3con_A 147 QAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMK 187 (190)
T ss_dssp HHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998765443
No 71
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.87 E-value=1.1e-21 Score=141.87 Aligned_cols=114 Identities=26% Similarity=0.521 Sum_probs=99.8
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC-----
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR----- 78 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~~----- 78 (163)
..++||| |+|+++|..++..+++++|++|+|||+++..+|..+ ..|+..+.+.. ++.|++||+||+|+.+.
T Consensus 76 ~~l~i~D--t~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~ 152 (205)
T 1gwn_A 76 IELSLWD--TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLV 152 (205)
T ss_dssp EEEEEEE--ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHH
T ss_pred EEEEEEe--CCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhh
Confidence 3466666 999999999999999999999999999999999998 67999887765 56899999999998642
Q ss_pred -------CccCHHHHHHHHHHcC-CeEEEEcCC-CCCCHHHHHHHHHHHHHH
Q 031249 79 -------RAVSKEEGEQFAKENG-LLFLEASAR-TAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 79 -------~~v~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~lf~~l~~~~~~ 121 (163)
+.+..+++..+++.++ .+++++||+ ++.||+++|+.+++.++.
T Consensus 153 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 153 ELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp HHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred hhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 5578888999999887 689999999 689999999999988764
No 72
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.2e-21 Score=140.10 Aligned_cols=115 Identities=35% Similarity=0.466 Sum_probs=102.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.++||| |+|+++ ..++..+++.+|++|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+.+.+..+
T Consensus 77 ~~~l~D--t~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 153 (196)
T 2atv_A 77 SMEILD--TAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTE 153 (196)
T ss_dssp EEEEEE--CCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEE--CCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHH
Confidence 456666 999988 78899999999999999999999999999999999877543 57999999999999777778889
Q ss_pred HHHHHHHHcCCeEEEEcCCCCC-CHHHHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKILQNI 123 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~-~i~~lf~~l~~~~~~~~ 123 (163)
++..++..++++++++||+++. ||+++|++|.+.+.+..
T Consensus 154 ~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 154 EGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999 99999999999887653
No 73
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.87 E-value=1.5e-21 Score=137.68 Aligned_cols=112 Identities=29% Similarity=0.541 Sum_probs=98.6
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------ 78 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------ 78 (163)
.++||| |||+++|..++..+++++|++|+|||+++..+|..+. .|+..+.... ++.|+++|+||+|+.+.
T Consensus 54 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 130 (186)
T 1mh1_A 54 NLGLWD--TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEK 130 (186)
T ss_dssp EEEEEC--CCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHH
T ss_pred EEEEEE--CCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhh
Confidence 344665 9999999999999999999999999999999999987 6888888765 47899999999998653
Q ss_pred ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+.+..+++..+++..+. +++++||+++.|++++|+++.+.+.
T Consensus 131 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 131 LKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp HHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred hcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 45778888899999997 8999999999999999999988775
No 74
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.87 E-value=8e-22 Score=143.17 Aligned_cols=114 Identities=28% Similarity=0.560 Sum_probs=86.2
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------ 78 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------ 78 (163)
.++||| |||+++|..++..+++++|++|+|||+++..+|..+. .|+..+.... ++.|++||+||+|+.+.
T Consensus 83 ~l~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 159 (214)
T 2j1l_A 83 HLHIWD--TAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNK 159 (214)
T ss_dssp EEEEEE--C---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHH
T ss_pred EEEEEE--CCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhh
Confidence 456666 9999999999999999999999999999999999987 6988887765 56899999999998654
Q ss_pred ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
+.+..+++..+++..++ +++++||+++.||+++|++|++.+.+.
T Consensus 160 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 160 LRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp HHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred hcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 25777888999999998 899999999999999999999988754
No 75
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.87 E-value=9.8e-22 Score=140.32 Aligned_cols=119 Identities=14% Similarity=0.245 Sum_probs=94.9
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--------CCCeEEEEeeCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--------PNMSIMLVGNKCDL 75 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--------~~~p~ilv~nK~D~ 75 (163)
+..++||| |+|+++|..++..+++++|++|||||+++..+|..+..|+..+..... .++|++||+||+|+
T Consensus 62 ~~~~~i~D--t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 139 (199)
T 4bas_A 62 RVAFTVFD--MGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDA 139 (199)
T ss_dssp TEEEEEEE--ECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTS
T ss_pred CEEEEEEE--CCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCC
Confidence 45677777 999999999999999999999999999999999999999988866421 26899999999999
Q ss_pred CCCCccCHHHHHHH------HHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249 76 AHRRAVSKEEGEQF------AKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126 (163)
Q Consensus 76 ~~~~~v~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~ 126 (163)
.+.. ..++.... ++..+++++++||+++.||+++|++|.+.+.+...+.
T Consensus 140 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~ 194 (199)
T 4bas_A 140 AGAK--TAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSGKA 194 (199)
T ss_dssp TTCC--CHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC---
T ss_pred CCCC--CHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhccc
Confidence 6642 22222211 1346678999999999999999999999988775443
No 76
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.86 E-value=1.4e-21 Score=140.46 Aligned_cols=112 Identities=20% Similarity=0.205 Sum_probs=91.4
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v 81 (163)
++..+++|| |||+++|..++..+++++|++|+|||+++..+|..+..|+..+.+.. ..+.|+++|+||+|+.+ .+
T Consensus 67 ~~~~l~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~ 142 (198)
T 1f6b_A 67 AGMTFTTFD--LGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AI 142 (198)
T ss_dssp TTEEEEEEE--ECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CC
T ss_pred CCEEEEEEE--CCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cC
Confidence 456777887 99999999999999999999999999999999999999999887642 25699999999999965 56
Q ss_pred CHHHHHHHHHH-----------------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 82 SKEEGEQFAKE-----------------NGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 82 ~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
..+++..++.. .+.+++++||+++.||+++|++|.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 143 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred CHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 77777776653 23569999999999999999999754
No 77
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.86 E-value=6.8e-21 Score=131.49 Aligned_cols=111 Identities=31% Similarity=0.550 Sum_probs=99.8
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHHH
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
+.+|| |||++++..++..+++.+|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+.+ +.+..++
T Consensus 53 ~~~~D--~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~ 129 (166)
T 2ce2_X 53 LDILD--TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQ 129 (166)
T ss_dssp EEEEE--CCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHH
T ss_pred EEEEE--CCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHH
Confidence 45566 999999999999999999999999999999999999999999877653 3699999999999876 5567888
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+..+++..+++++++||+++.|++++|+++.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 130 AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999998875
No 78
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=6.4e-21 Score=137.56 Aligned_cols=113 Identities=27% Similarity=0.525 Sum_probs=99.5
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------ 78 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~~------ 78 (163)
.++||| |||+++|..++..+++++|++|+|||+++..+|..+ ..|+..+.... ++.|+++|+||+|+.+.
T Consensus 74 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 150 (207)
T 2fv8_A 74 ELALWD--TAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTE 150 (207)
T ss_dssp EEEEEE--CTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHH
T ss_pred EEEEEE--CCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhh
Confidence 456666 999999999999999999999999999999999998 56888887754 56899999999998654
Q ss_pred ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+.+..+++..++...+. +++++||+++.||+++|++|.+.+.+
T Consensus 151 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 151 LARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp HHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred hhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 45778888899998888 89999999999999999999988764
No 79
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.86 E-value=4.3e-22 Score=137.97 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=91.3
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v 81 (163)
.+..++||| |||+++|..++..+++++|++++|||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+. .
T Consensus 42 ~~~~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~ 117 (164)
T 1r8s_A 42 KNISFTVWD--VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--M 117 (164)
T ss_dssp SSCEEEEEE--CCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--C
T ss_pred CCEEEEEEE--cCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--C
Confidence 345778888 99999999999999999999999999999999999999998886542 256899999999999653 2
Q ss_pred CHHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 82 SKEEGEQFA-----KENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 82 ~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
...+..... ...+++++++||+++.|++++|++|.+.+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 118 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 333332221 1234569999999999999999999987654
No 80
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=1.3e-21 Score=136.20 Aligned_cols=112 Identities=29% Similarity=0.415 Sum_probs=99.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCCCCccCH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
.++||| |||+++|..++..+++.+|++|+|||+++..+++.+..|+..+.+... ++.|+++|+||+|+.+.+.+..
T Consensus 52 ~~~~~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~ 129 (172)
T 2erx_A 52 TLQITD--TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQS 129 (172)
T ss_dssp EEEEEE--CCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCH
T ss_pred EEEEEE--CCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCH
Confidence 466777 999999999999999999999999999999999999999988876542 4689999999999977777888
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.++..++..++++++++||+++.|++++|++|.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 130 SEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp HHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 888899999999999999999999999999998754
No 81
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.86 E-value=2.3e-23 Score=149.46 Aligned_cols=114 Identities=46% Similarity=0.830 Sum_probs=92.4
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+.||| |||+++|..++..+++++|++|+|||+++..+|..+..|+..+......+.|++||+||+|+.+.+.+..++
T Consensus 83 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~ 160 (199)
T 3l0i_B 83 KLQIWD--TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTT 160 (199)
T ss_dssp EEEEEC--CTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC
T ss_pred EEEEEE--CCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHH
Confidence 456666 999999999999999999999999999999999999999999987765679999999999998777777777
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+..++..++++++++||+++.||+++|++|.+.+.+
T Consensus 161 ~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 161 AKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp -CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999876643
No 82
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.86 E-value=2.3e-21 Score=139.75 Aligned_cols=113 Identities=27% Similarity=0.533 Sum_probs=97.7
Q ss_pred cceee--EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCC-
Q 031249 4 SQESF--FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR- 79 (163)
Q Consensus 4 ~~~~~--l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~- 79 (163)
+..+. ||| |||+++|..++..+++++|++|+|||+++..+|..+. .|+..+.... ++.|+++|+||+|+.+..
T Consensus 75 ~~~~~l~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 75 GKPVNLGLWD--TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp -CEEEEEEEE--ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHH
T ss_pred CEEEEEEEEE--CCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchh
Confidence 44455 666 9999999999999999999999999999999999997 6888888765 679999999999986543
Q ss_pred -----------ccCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHH
Q 031249 80 -----------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 80 -----------~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.+..+++..+++..+.. ++++||+++.||+++|+++++.+
T Consensus 152 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 152 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred hhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 27778888999998864 99999999999999999998754
No 83
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.85 E-value=3.4e-21 Score=137.46 Aligned_cols=112 Identities=19% Similarity=0.184 Sum_probs=94.2
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v 81 (163)
++..+++|| |||++++..++..+++++|++|+|||+++..+|..+..|+..+.+.. ..+.|+++|+||+|+.+ .+
T Consensus 65 ~~~~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~ 140 (190)
T 1m2o_B 65 GNIKFTTFD--LGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AV 140 (190)
T ss_dssp TTEEEEEEE--CCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CC
T ss_pred CCEEEEEEE--CCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CC
Confidence 455677777 99999999999999999999999999999999999999998886642 25689999999999965 46
Q ss_pred CHHHHHHHHHH------------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 82 SKEEGEQFAKE------------NGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 82 ~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
..+++...+.. .+++++++||+++.||+++|++|.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 141 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred CHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 66776665542 34569999999999999999999753
No 84
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=133.32 Aligned_cols=115 Identities=19% Similarity=0.255 Sum_probs=95.7
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCCCC
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRR 79 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ilv~nK~D~~~~~ 79 (163)
++..+.||| |+|++++..++..+++++|++|+|||+++..+|..+..|+..+..... .+.|+++|+||+|+.+
T Consensus 65 ~~~~~~l~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-- 140 (190)
T 2h57_A 65 SSLSFTVFD--MSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD-- 140 (190)
T ss_dssp SSCEEEEEE--ECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--
T ss_pred CCEEEEEEE--CCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--
Confidence 456778888 999999999999999999999999999999999999999998877543 4689999999999965
Q ss_pred ccCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 80 AVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 80 ~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
....+++...+. ..+++++++||+++.||+++|++|.+.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 141 AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 345566665553 235679999999999999999999887654
No 85
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.85 E-value=1.7e-21 Score=135.76 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=92.3
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..++||| |||++++..++..+++++|++|+|||+++..+|..+..|+..+..... .+.|+++|+||+|+.+.. .
T Consensus 50 ~~~~~~~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~ 125 (171)
T 1upt_A 50 NLKFQVWD--LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--T 125 (171)
T ss_dssp TEEEEEEE--ECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--C
T ss_pred CEEEEEEE--CCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--C
Confidence 45677888 999999999999999999999999999999999999888888765432 568999999999996532 2
Q ss_pred HHHHHHH-----HHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 83 KEEGEQF-----AKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 83 ~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
..+.... +...+++++++||+++.|++++|++|.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 126 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 2333222 22335679999999999999999999987753
No 86
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.84 E-value=6.8e-21 Score=138.63 Aligned_cols=114 Identities=30% Similarity=0.572 Sum_probs=98.9
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..++||| |+|+++|..++..+++++|++|+|||+++..+|..+..|+..+.+.. .++|+++|+||+|+.+.. +. .
T Consensus 64 ~~~~i~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~-~~-~ 138 (221)
T 3gj0_A 64 IKFNVWD--TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK-VK-A 138 (221)
T ss_dssp EEEEEEE--ECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCS-SC-G
T ss_pred EEEEEEe--CCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccc-cc-H
Confidence 3456666 99999999999999999999999999999999999999999998875 578999999999996643 32 3
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
+...++...+++++++||+++.||+++|++|.+.+....
T Consensus 139 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 139 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp GGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 566678888999999999999999999999999886543
No 87
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.84 E-value=1.2e-21 Score=140.02 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=85.9
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..++||| |||+++|..++..+++++|++|+|||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+. ..
T Consensus 72 ~~~~~i~D--t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~ 147 (192)
T 2b6h_A 72 NICFTVWD--VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MP 147 (192)
T ss_dssp TEEEEEEE--CC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CC
T ss_pred CEEEEEEE--CCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CC
Confidence 45677887 99999999999999999999999999999999999999998886543 246899999999999653 23
Q ss_pred HHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 83 KEEGEQFA-----KENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 83 ~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
.++..... ...+++++++||+++.||+++|++|.+.+.
T Consensus 148 ~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 148 VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 33332221 122356999999999999999999988764
No 88
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.84 E-value=5e-21 Score=137.06 Aligned_cols=111 Identities=23% Similarity=0.333 Sum_probs=91.7
Q ss_pred ceeeEeeecccchhhhhhch---hhhccCCcEEEEEEECCCh--HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC--
Q 031249 5 QESFFWSLLQAGQESFRSIT---RSYYRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 77 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~---~~~~~~ad~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~-- 77 (163)
..++||| |+|+++|..+. ..+++++|++|+|||+++. +++..+..|+..+.... ++.|++||+||+|+.+
T Consensus 69 ~~l~i~D--t~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~ 145 (196)
T 3llu_A 69 VNFQIWD--FPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDD 145 (196)
T ss_dssp CCEEEEE--CCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHH
T ss_pred eEEEEEE--CCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchh
Confidence 4667777 99999998776 8999999999999999997 77787888888875544 5799999999999754
Q ss_pred -----CCccCHHHHHHHHH----HcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 78 -----RRAVSKEEGEQFAK----ENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 78 -----~~~v~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.+.+..+++..+++ ..+++++++||++ .||+++|..+++.+
T Consensus 146 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 146 HKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 23455556677777 6678899999999 99999999998765
No 89
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.84 E-value=1.2e-20 Score=133.52 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=91.2
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v 81 (163)
++..+++|| |||+++|..++..+++++|++++|||+++..+|..+..|+..+.... ..+.|+++|+||+|+.+..
T Consensus 58 ~~~~l~i~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-- 133 (181)
T 1fzq_A 58 QGFKLNVWD--IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA-- 133 (181)
T ss_dssp TTEEEEEEE--CSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--
T ss_pred CCEEEEEEE--CCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--
Confidence 355678887 99999999999999999999999999999999999988888875432 2568999999999996543
Q ss_pred CHHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 82 SKEEGEQFA-----KENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 82 ~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
..++..... ...+++++++||+++.||+++|++|.+.+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 134 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred CHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 333333221 1224569999999999999999999887654
No 90
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.9e-20 Score=132.80 Aligned_cols=116 Identities=22% Similarity=0.280 Sum_probs=91.2
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v 81 (163)
.+..++||| |||++++..++..+++++|++|+|||+++..+|..+..|+..+.+.. ..+.|+++|+||+|+.+ ..
T Consensus 58 ~~~~~~i~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~ 133 (187)
T 1zj6_A 58 NNTRFLMWD--IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CM 133 (187)
T ss_dssp TTEEEEEEE--CCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CC
T ss_pred CCEEEEEEE--CCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CC
Confidence 356778888 99999999999999999999999999999999999999999887653 25689999999999965 33
Q ss_pred CHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 82 SKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 82 ~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
..+++..... ..+++++++||+++.|++++|++|++.+...
T Consensus 134 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 134 TVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHH
Confidence 4555544432 2356799999999999999999998876443
No 91
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.84 E-value=4.1e-20 Score=130.75 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=94.7
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v 81 (163)
++..++||| |||++++..++..+++++|++|+|||++++.+|..+..|+..+.+.. ..+.|+++|+||+|+.+. .
T Consensus 60 ~~~~~~~~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~ 135 (186)
T 1ksh_A 60 RGFKLNIWD--VGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--L 135 (186)
T ss_dssp TTEEEEEEE--ECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--C
T ss_pred CCEEEEEEE--CCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--C
Confidence 356778888 99999999999999999999999999999999999999988886642 256899999999999653 2
Q ss_pred CHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 82 SKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 82 ~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
..++...... ..+++++++||+++.|++++|+++.+.+.++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 136 SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 3344433322 2356799999999999999999999887643
No 92
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.83 E-value=3.1e-21 Score=137.01 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=92.8
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..+++|| |||++++..++..+++++|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.. .
T Consensus 65 ~~~~~~~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~ 140 (189)
T 2x77_A 65 NISFEVWD--LGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--S 140 (189)
T ss_dssp TEEEEEEE--ECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--C
T ss_pred CEEEEEEE--CCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--C
Confidence 45677888 999999999999999999999999999999999999888888866432 468999999999996532 2
Q ss_pred HHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 83 KEEGEQFA-----KENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 83 ~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
.++..... ...+++++++||+++.||+++|+++.+.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 141 EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 33332221 22345799999999999999999999888653
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.83 E-value=2.5e-20 Score=131.64 Aligned_cols=112 Identities=22% Similarity=0.284 Sum_probs=91.6
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v 81 (163)
.+..++||| |+|+++|..++..+++++|++|+|||+++..+|..+..|+..+.+.. ..+.|+++|+||+|+.+. .
T Consensus 63 ~~~~~~i~D--t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~ 138 (181)
T 2h17_A 63 NNTRFLMWD--IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--M 138 (181)
T ss_dssp TTEEEEEEE--ESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--C
T ss_pred CCEEEEEEE--CCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--C
Confidence 355778888 99999999999999999999999999999999999999988887642 256899999999999652 3
Q ss_pred CHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 82 SKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 82 ~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
..+++..... ..+++++++||+++.||+++|++|.+.
T Consensus 139 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 139 TVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp CHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred CHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 4455444332 234579999999999999999999754
No 94
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.83 E-value=3.5e-19 Score=127.68 Aligned_cols=120 Identities=48% Similarity=0.813 Sum_probs=105.6
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+++|| |+|++++..++..+++++|++++|||+++..++..+..|+..+........|+++++||+|+.+.+.+..++
T Consensus 55 ~~~i~D--t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~ 132 (199)
T 2f9l_A 55 KAQIWD--TAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDE 132 (199)
T ss_dssp EEEEEE--CSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEE--CCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHH
Confidence 345566 999999999999999999999999999999999999889988876554568999999999997766778888
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 127 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~ 127 (163)
+..++...++.++++||+++.+++++|++|.+.+.+...+..
T Consensus 133 a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~~~~~ 174 (199)
T 2f9l_A 133 ARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174 (199)
T ss_dssp HHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999987664443
No 95
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.83 E-value=8e-20 Score=140.00 Aligned_cols=112 Identities=29% Similarity=0.524 Sum_probs=99.1
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC-------
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------- 78 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------- 78 (163)
++||| |||+++|..++..+++++|++|+|||+++..+|..+. .|+..+.... +++|+++|+||+|+.+.
T Consensus 205 ~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~ 281 (332)
T 2wkq_A 205 LGLWD--TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 281 (332)
T ss_dssp EEEEE--ECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHH
T ss_pred EEEEe--CCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhc
Confidence 34666 9999999999999999999999999999999999987 6888887765 47999999999998543
Q ss_pred -----CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 79 -----RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 79 -----~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+.+..+++..+++..++ +++++||+++.||+++|+.|.+.+..
T Consensus 282 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 282 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 56788899999999997 89999999999999999999988753
No 96
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=4.8e-20 Score=129.87 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=91.6
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v 81 (163)
.+..+.+|| |||++++..++..+++++|++++|||+++..++..+..|+..+.... ..+.|+++|+||+|+.+. .
T Consensus 60 ~~~~~~i~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~ 135 (183)
T 1moz_A 60 KNLKLNVWD--LGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--L 135 (183)
T ss_dssp TTEEEEEEE--EC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--C
T ss_pred CCEEEEEEE--CCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--C
Confidence 355677888 99999999999999999999999999999999999999998886653 256899999999998653 3
Q ss_pred CHHHHHHHHHH-----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 82 SKEEGEQFAKE-----NGLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 82 ~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
..++....... .+++++++||+++.|++++|++|.+.+.+++
T Consensus 136 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 136 SASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 182 (183)
T ss_dssp CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhcc
Confidence 44544443322 2346999999999999999999999887653
No 97
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.82 E-value=5.6e-21 Score=135.88 Aligned_cols=114 Identities=18% Similarity=0.286 Sum_probs=90.8
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..++||| |||+++|..++..+++++|++|||||+++..++..+..|+..+.... ..+.|+++|+||+|+.+. ..
T Consensus 66 ~~~~~l~D--t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~ 141 (188)
T 1zd9_A 66 NVTIKLWD--IGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LD 141 (188)
T ss_dssp TEEEEEEE--ECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CC
T ss_pred CEEEEEEE--CCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CC
Confidence 45677777 99999999999999999999999999999999999999998886642 256899999999999653 23
Q ss_pred HHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 83 KEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 83 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
.++...... ..+++++++||+++.||+++|++|.+.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 142 EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred HHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 333222211 234569999999999999999999887644
No 98
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.82 E-value=1e-20 Score=147.20 Aligned_cols=118 Identities=17% Similarity=0.202 Sum_probs=99.2
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC----------hHHHHHHHHHHHHHHHhcC-CCCeEEEEee
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHAN-PNMSIMLVGN 71 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~~-~~~p~ilv~n 71 (163)
.+..++||| |+|+++|+.+|..|+++++++|||||+++ ..++.....|+..+..... .++|++|++|
T Consensus 191 ~~~~l~iwD--t~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~N 268 (353)
T 1cip_A 191 KDLHFKMFD--VGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLN 268 (353)
T ss_dssp TTEEEEEEE--ECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEE
T ss_pred CCeeEEEEe--CCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEE
Confidence 356788888 89999999999999999999999999998 4678888889988876432 5699999999
Q ss_pred CCCCCCCC---------------ccCHHHHHHHHH-----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 72 KCDLAHRR---------------AVSKEEGEQFAK-----------ENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 72 K~D~~~~~---------------~v~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
|+|+.+++ .++.+++..++. ..++.++++||+++.||.++|.++...+.+.
T Consensus 269 K~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 269 KKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp CHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 99985322 366788888876 3456799999999999999999999988754
No 99
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.82 E-value=1.1e-20 Score=134.09 Aligned_cols=115 Identities=18% Similarity=0.328 Sum_probs=92.6
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR-ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
...+++|| |+|+++|..++..+++++|++++|||+++. .+|..+..|+..+.... ++.|++||+||+|+.+.+.+.
T Consensus 55 ~~~~~i~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~ 131 (184)
T 2zej_A 55 DLVLNVWD--FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRK 131 (184)
T ss_dssp -CEEEEEE--ECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHH
T ss_pred ceEEEEEe--cCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhH
Confidence 34567777 999999999999999999999999999997 58999999999987764 468999999999986543322
Q ss_pred ---HHHHHHHHHHcCCe----EEEEcCCCCC-CHHHHHHHHHHHHHH
Q 031249 83 ---KEEGEQFAKENGLL----FLEASARTAQ-NVEEAFIKTAAKILQ 121 (163)
Q Consensus 83 ---~~~~~~~~~~~~~~----~~~~Sa~~~~-~i~~lf~~l~~~~~~ 121 (163)
.+.+..+++..+++ ++++||+++. +++++++.+.+.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 132 ACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp HHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 23345566666776 9999999997 899999888877654
No 100
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.81 E-value=4e-21 Score=147.47 Aligned_cols=119 Identities=17% Similarity=0.231 Sum_probs=92.8
Q ss_pred ceeeEeeecccchhhhhh---chhhhccCCcEEEEEEECCCh--HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC-
Q 031249 5 QESFFWSLLQAGQESFRS---ITRSYYRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR- 78 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~---~~~~~~~~ad~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~- 78 (163)
..++||| |||||+|.. ++..|+++++++|||||+++. .++..+..|+..+.+.. +++|++|+|||+|+..+
T Consensus 46 v~LqIWD--TAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~ 122 (331)
T 3r7w_B 46 IDLAVME--LPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSED 122 (331)
T ss_dssp SCEEEEE--CCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSH
T ss_pred EEEEEEE--CCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchh
Confidence 5788888 999999964 468999999999999999997 33444444455555443 67999999999999653
Q ss_pred ------CccCHHHHHHHHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249 79 ------RAVSKEEGEQFAKE----NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 127 (163)
Q Consensus 79 ------~~v~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~ 127 (163)
+++..+++.++++. .++.|+++||++ .+|.+.|..+++.++......+
T Consensus 123 ~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~~~~le 180 (331)
T 3r7w_B 123 FKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPELSFLE 180 (331)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTTHHHHH
T ss_pred hhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhhHHHHH
Confidence 34666777777775 678899999998 5999999999988776554443
No 101
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.70 E-value=1.3e-21 Score=140.76 Aligned_cols=111 Identities=28% Similarity=0.533 Sum_probs=95.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCC-----
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR----- 79 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~----- 79 (163)
.++||| |||+++|..++..+++++|++|+|||++++.+|..+. .|+..+.... ++.|+++|+||+|+.+..
T Consensus 79 ~l~i~D--t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~ 155 (204)
T 3th5_A 79 NLGLWD--TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEK 155 (204)
Confidence 344666 9999999999999999999999999999999999987 7888887654 368999999999996542
Q ss_pred -------ccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 80 -------AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 80 -------~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.+..+++..+++..++ +++++||+++.||+++|++|++.+
T Consensus 156 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 156 LKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 4556777788888887 899999999999999999998765
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.79 E-value=7.8e-20 Score=136.38 Aligned_cols=105 Identities=27% Similarity=0.366 Sum_probs=87.0
Q ss_pred ccchhhhhhchhhhcc---------------------CCcEEEEEEECCCh--HHHHHHHHHHHHHHHh-cCCCCeEEEE
Q 031249 14 QAGQESFRSITRSYYR---------------------GAAGALLVYDITRR--ETFNHLSSWLEDARQH-ANPNMSIMLV 69 (163)
Q Consensus 14 t~G~e~~~~~~~~~~~---------------------~ad~~i~v~d~~~~--~s~~~~~~~~~~l~~~-~~~~~p~ilv 69 (163)
++|+++|..++..+++ ++|++|+|||++++ .+|+.+..|+..+.+. ...++|++||
T Consensus 125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV 204 (255)
T 3c5h_A 125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVV 204 (255)
T ss_dssp HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 6778888888888888 89999999999998 9999999999998765 2356899999
Q ss_pred eeCCCCCCCCccCHHHHHHHHHH-cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 70 GNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 70 ~nK~D~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+||+|+.+.+.+ +++..++.. .+++++++||+++.||+++|++|++.+.
T Consensus 205 ~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 205 LTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp EECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 999998654433 567777776 4789999999999999999999988763
No 103
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.79 E-value=9.5e-20 Score=141.76 Aligned_cols=119 Identities=15% Similarity=0.202 Sum_probs=94.1
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECC----------ChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHA-NPNMSIMLVGNK 72 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK 72 (163)
...++||| |+|+++|+.+|..|+++++++|||||++ +..+|.....|++.+.... ..++|++||+||
T Consensus 182 ~v~l~iwD--taGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 182 GEVYRLFD--VGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp --EEEEEE--ECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred ceeeEEEE--CCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEEC
Confidence 35678888 9999999999999999999999999998 7889999999999887643 257999999999
Q ss_pred CCCCCCCc--c-------------------CHHHHHHHHHH----------------cCCeEEEEcCCCCCCHHHHHHHH
Q 031249 73 CDLAHRRA--V-------------------SKEEGEQFAKE----------------NGLLFLEASARTAQNVEEAFIKT 115 (163)
Q Consensus 73 ~D~~~~~~--v-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~lf~~l 115 (163)
+|+.+++. + ..+++..++.. ..+.++++||+++.||.++|.++
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 99843221 1 14566666432 12346899999999999999999
Q ss_pred HHHHHHHHh
Q 031249 116 AAKILQNIQ 124 (163)
Q Consensus 116 ~~~~~~~~~ 124 (163)
.+.+.+...
T Consensus 340 ~~~I~~~~l 348 (354)
T 2xtz_A 340 DETLRRRNL 348 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998876543
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.78 E-value=1.1e-19 Score=147.05 Aligned_cols=120 Identities=18% Similarity=0.294 Sum_probs=92.9
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v 81 (163)
.+..++||| |||+++|..++..+++++|++|+|||+++..+|..+..|+..+.+... .++|++||+||+|+.+. .
T Consensus 364 ~~~~~~l~D--t~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~ 439 (497)
T 3lvq_E 364 KNVKFNVWD--VGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--M 439 (497)
T ss_dssp SSCEEEEEE--ECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--C
T ss_pred CCEEEEEEE--CCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--C
Confidence 456788888 999999999999999999999999999999999999999888866432 56999999999999653 3
Q ss_pred CHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249 82 SKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126 (163)
Q Consensus 82 ~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~ 126 (163)
...+...... ..+++++++||++|.||+++|++|.+.+.+.....
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~~~~ 489 (497)
T 3lvq_E 440 KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKLAAA 489 (497)
T ss_dssp CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC------
T ss_pred CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 3333332221 12345999999999999999999998776555443
No 105
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.78 E-value=1.3e-19 Score=141.33 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=91.8
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC----------hHHHHHHHHHHHHHHHhc-CCCCeEEEEee
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHA-NPNMSIMLVGN 71 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~ilv~n 71 (163)
.+..++||| |+|+++++.+|..|+++++++|||||+++ ..++.....|+..+.... ..++|+||++|
T Consensus 199 ~~~~l~i~D--t~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~N 276 (362)
T 1zcb_A 199 KNVPFKMVD--VGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLN 276 (362)
T ss_dssp TTEEEEEEE--ECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEE
T ss_pred CCeEEEEEe--ccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEE
Confidence 356788888 99999999999999999999999999999 678999999999887643 25799999999
Q ss_pred CCCCCCCC----------------ccCHHHHHHHHH-----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 72 KCDLAHRR----------------AVSKEEGEQFAK-----------ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 72 K~D~~~~~----------------~v~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
|+|+.+++ .++.+++..++. ..++.++++||+++.||.++|.++...+.+...
T Consensus 277 K~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 277 KTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp CHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence 99985322 266777777652 335678999999999999999999998876543
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.78 E-value=9.4e-20 Score=140.68 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=86.2
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..++||| |||+++|..++..+++.+|++|+|||+++..+|..+..|+..+..... .++|++||+||+|+.+.. .
T Consensus 208 ~~~l~i~D--t~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~ 283 (329)
T 3o47_A 208 NISFTVWD--VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--N 283 (329)
T ss_dssp TEEEEEEE--CC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--C
T ss_pred cEEEEEEE--CCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--C
Confidence 45677777 999999999999999999999999999999999999888877755432 579999999999996532 2
Q ss_pred HHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 83 KEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 83 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
.++...... ..+++++++||+++.||+++|++|++.+.+
T Consensus 284 ~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 284 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 333332221 123469999999999999999999987754
No 107
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.78 E-value=1.6e-19 Score=142.32 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=96.2
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC----------hHHHHHHHHHHHHHHHhc-CCCCeEEEEee
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHA-NPNMSIMLVGN 71 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~ilv~n 71 (163)
.+..++||| |+|+++|+.+|..|+++++++|||||+++ ..+|..+..|+..+.... ..++|++||+|
T Consensus 215 ~~v~l~iwD--taGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgN 292 (402)
T 1azs_C 215 DKVNFHMFD--VGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLN 292 (402)
T ss_dssp TTEEEEEEE--ECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEE
T ss_pred CCccceecc--cchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEE
Confidence 356788888 99999999999999999999999999999 889999999999997653 36799999999
Q ss_pred CCCCCCCCc---c---------------------------CHHHHHHHH-----HH--------cCCeEEEEcCCCCCCH
Q 031249 72 KCDLAHRRA---V---------------------------SKEEGEQFA-----KE--------NGLLFLEASARTAQNV 108 (163)
Q Consensus 72 K~D~~~~~~---v---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~i 108 (163)
|+|+.+.+. + ..+++..++ .. ..+.++++||+++.||
T Consensus 293 K~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV 372 (402)
T 1azs_C 293 KQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI 372 (402)
T ss_dssp CHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHH
T ss_pred ChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCH
Confidence 999854221 1 134555553 22 2345789999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 031249 109 EEAFIKTAAKILQNIQ 124 (163)
Q Consensus 109 ~~lf~~l~~~~~~~~~ 124 (163)
.++|.++...+.+...
T Consensus 373 ~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 373 RRVFNDCRDIIQRMHL 388 (402)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888776543
No 108
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.77 E-value=2.2e-19 Score=138.14 Aligned_cols=118 Identities=16% Similarity=0.143 Sum_probs=96.7
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECC----------ChHHHHHHHHHHHHHHHhcC-CCCeEEEEee
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHAN-PNMSIMLVGN 71 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~n 71 (163)
.+..++||| |+|+++|+.+|..|+++++++|||||++ +..++.....|+..+..... .++|++|++|
T Consensus 165 ~~v~l~iwD--tgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~N 242 (327)
T 3ohm_A 165 QSVIFRMVD--VGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN 242 (327)
T ss_dssp TTEEEEEEE--ECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred eceeeEEEE--cCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEE
Confidence 356788888 8999999999999999999999999654 66778888888888865432 5799999999
Q ss_pred CCCCCCCC----------------ccCHHHHHHHHH----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 72 KCDLAHRR----------------AVSKEEGEQFAK----------ENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 72 K~D~~~~~----------------~v~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
|+|+.+++ .++.+++..++. ..++.++++||+++.||..+|..+...+++.
T Consensus 243 K~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 243 KKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp CHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred CchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 99985433 467788877743 3456689999999999999999999998864
No 109
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.77 E-value=7.6e-18 Score=120.17 Aligned_cols=111 Identities=50% Similarity=0.865 Sum_probs=98.9
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHH
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 86 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~ 86 (163)
+++|| |+|++++..++..+++.++++++|||.++..+|+.+..|+..+........|+++++||.|+.+.+.+..+++
T Consensus 80 ~~i~D--t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a 157 (191)
T 1oix_A 80 AQIWD--TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEA 157 (191)
T ss_dssp EEEEE--ECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH
T ss_pred EEEEE--CCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHH
Confidence 34466 9999999999999999999999999999999999988899888765545689999999999977667788889
Q ss_pred HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 87 EQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 87 ~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
..++...++.++++|++++.+++++|+.|.+.+
T Consensus 158 ~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 158 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999998765
No 110
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.77 E-value=6.5e-19 Score=127.34 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=79.6
Q ss_pred cceeeEeeecccchhhhhh-chhhhccCCcEEEEEEECCChH-HHHHHHHHHHHH-HHh--cCCCCeEEEEeeCCCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRS-ITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDA-RQH--ANPNMSIMLVGNKCDLAHR 78 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~-~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l-~~~--~~~~~p~ilv~nK~D~~~~ 78 (163)
+..++||| |||+++|.. ++..|++++|++|||||+++.. ++..+..++..+ ... ...+.|++||+||+|+.+.
T Consensus 53 ~~~~~i~D--t~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 53 GNSLTLID--LPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp CCEEEEEE--CCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred ccEEEEEE--CCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 35677887 999999998 8999999999999999999854 466665544444 332 2346899999999999764
Q ss_pred CccCHHHHHHH----HH---------------------------------Hc--CCeEEEEcCCCC------CCHHHHHH
Q 031249 79 RAVSKEEGEQF----AK---------------------------------EN--GLLFLEASARTA------QNVEEAFI 113 (163)
Q Consensus 79 ~~v~~~~~~~~----~~---------------------------------~~--~~~~~~~Sa~~~------~~i~~lf~ 113 (163)
... ++.... .. .. +++|+++||+++ .||+++|+
T Consensus 131 ~~~--~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~ 208 (214)
T 2fh5_B 131 KSA--KLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEK 208 (214)
T ss_dssp CCH--HHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHH
T ss_pred ccH--HHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHH
Confidence 321 211111 11 11 556999999999 99999999
Q ss_pred HHHHH
Q 031249 114 KTAAK 118 (163)
Q Consensus 114 ~l~~~ 118 (163)
+|.+.
T Consensus 209 ~l~~~ 213 (214)
T 2fh5_B 209 WLAKI 213 (214)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99865
No 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.77 E-value=1.3e-18 Score=133.11 Aligned_cols=114 Identities=17% Similarity=0.329 Sum_probs=93.5
Q ss_pred cceeeEeeecccchhhh-----hhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc--CCCCeEEEEeeCCCCC
Q 031249 4 SQESFFWSLLQAGQESF-----RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLA 76 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~-----~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ilv~nK~D~~ 76 (163)
+..++||| |||+++| ..++..+++++|++|+|||+++..+|+.+..|...+.... .+++|+++|+||+|+.
T Consensus 51 ~~~l~i~D--t~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 51 NMTLNLWD--CGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp TEEEEEEE--ECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred ceEEEEEE--CCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 45677777 9999999 7889999999999999999999999999877755543321 2579999999999986
Q ss_pred C--CCc----cCHHHHHHHHHHcC---CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 77 H--RRA----VSKEEGEQFAKENG---LLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 77 ~--~~~----v~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+ .+. +..+++..+++.+| ++++++||++ .++.++|..++..+.
T Consensus 129 ~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 129 QLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred chhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence 5 333 55577888999887 6899999999 899999999887554
No 112
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.75 E-value=9.1e-18 Score=122.79 Aligned_cols=118 Identities=17% Similarity=0.124 Sum_probs=88.4
Q ss_pred cceeeEeeecccch------hh----hhhchhhhccCCcEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCeEEEEee
Q 031249 4 SQESFFWSLLQAGQ------ES----FRSITRSYYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGN 71 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~------e~----~~~~~~~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ilv~n 71 (163)
+..++||| |||+ ++ +.. +..++..+|++|||||+++..+|. ....|+..+.... ++.|+++|+|
T Consensus 75 ~~~~~l~D--tpG~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~n 150 (228)
T 2qu8_A 75 LNKYQIID--TPGLLDRAFENRNTIEMTT-ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFN 150 (228)
T ss_dssp TEEEEEEE--CTTTTTSCGGGCCHHHHHH-HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEE
T ss_pred CCeEEEEE--CCCCcCcccchhhhHHHHH-HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEe
Confidence 45677777 9998 44 322 345678999999999999987764 2335666665432 3689999999
Q ss_pred CCCCCCCCccCHH---HHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249 72 KCDLAHRRAVSKE---EGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 72 K~D~~~~~~v~~~---~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
|+|+.+.+.+... ....++...+ ++++++||+++.||+++|++|.+.+.+...+
T Consensus 151 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~ 209 (228)
T 2qu8_A 151 KIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQAE 209 (228)
T ss_dssp CGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHHH
Confidence 9999776666654 4556677776 7899999999999999999999998877544
No 113
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.75 E-value=2.5e-18 Score=131.24 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=88.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.+++|| | +++|..+++.|++++|++|+|||++++. ++..+..|+..+.. .++|++||+||+|+.+.+.+ +
T Consensus 64 ~~~iwD--~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~~piilv~NK~DL~~~~~v--~ 134 (301)
T 1u0l_A 64 SGVIEN--V--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDL--R 134 (301)
T ss_dssp SEEEEE--E--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHH--H
T ss_pred eEEEEE--E--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEeHHHcCCchhH--H
Confidence 678898 6 9999999999999999999999999987 78888999988765 35899999999999653332 4
Q ss_pred HHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHH
Q 031249 85 EGEQFAKENG--LLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 85 ~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
++..++..++ .+++++||+++.||+++|..+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 135 KVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 5677777777 89999999999999999988753
No 114
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.74 E-value=1.8e-18 Score=120.56 Aligned_cols=107 Identities=19% Similarity=0.137 Sum_probs=84.3
Q ss_pred cceeeEeeecccchhhhh------hchhhhcc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 4 SQESFFWSLLQAGQESFR------SITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~------~~~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
+..+++|| |||+++|. .+...|++ ++|++++|+|+++.+. ...|+..+.+. +.|+++|+||+|+
T Consensus 49 ~~~l~i~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl 120 (165)
T 2wji_A 49 GEKFKVVD--LPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDL 120 (165)
T ss_dssp TEEEEEEE--CCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHH
T ss_pred CcEEEEEE--CCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHh
Confidence 55677888 99998875 34566775 8999999999998543 34577777653 5899999999998
Q ss_pred CCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 76 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 76 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
...+.+.. ++..+++.++++++++||+++.||+++|+++.+.+
T Consensus 121 ~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 121 AKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp HHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred ccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 65444432 46778888899999999999999999999998764
No 115
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.74 E-value=2.1e-18 Score=133.19 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=95.8
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECC----------ChHHHHHHHHHHHHHHHhcC-CCCeEEEEee
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHAN-PNMSIMLVGN 71 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~n 71 (163)
.+..++||| |+|+++|+.+|..|+++++++|||||++ +..++.....|+..+..... .++|++|++|
T Consensus 159 ~~v~l~iwD--taGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~N 236 (340)
T 4fid_A 159 KDIPFHLID--VGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLN 236 (340)
T ss_dssp SSCEEEEEE--CCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEE
T ss_pred eeeeecccc--CCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEE
Confidence 466788998 9999999999999999999999999998 67889888888888876543 5799999999
Q ss_pred CCCCCCCC---------------ccCHHHHHHHHH-Hc--------------------------CCeEEEEcCCCCCCHH
Q 031249 72 KCDLAHRR---------------AVSKEEGEQFAK-EN--------------------------GLLFLEASARTAQNVE 109 (163)
Q Consensus 72 K~D~~~~~---------------~v~~~~~~~~~~-~~--------------------------~~~~~~~Sa~~~~~i~ 109 (163)
|+|+.+++ ....+++..++. .+ .+.++++||++..+|.
T Consensus 237 K~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~ 316 (340)
T 4fid_A 237 KMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK 316 (340)
T ss_dssp CHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred CchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence 99984311 124566655443 33 3558999999999999
Q ss_pred HHHHHHHHHHHH
Q 031249 110 EAFIKTAAKILQ 121 (163)
Q Consensus 110 ~lf~~l~~~~~~ 121 (163)
.+|..+...+++
T Consensus 317 ~vF~~v~~~Il~ 328 (340)
T 4fid_A 317 RVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999988
No 116
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.74 E-value=5.5e-18 Score=118.63 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=83.0
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 79 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~ 79 (163)
++..+.||| |||+++|..++..+++.+|++|+|||+++ ..+++.+ ..+. ..+.|+++|+||+|+.+.
T Consensus 53 ~~~~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l----~~~~---~~~~p~ilv~nK~Dl~~~- 122 (178)
T 2lkc_A 53 NDKKITFLD--TPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAI----NHAK---AANVPIIVAINKMDKPEA- 122 (178)
T ss_dssp TTEEEEESC--CCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHH----HHHG---GGSCCEEEEEETTTSSCS-
T ss_pred CCceEEEEE--CCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHHH---hCCCCEEEEEECccCCcC-
Confidence 455677887 99999999999999999999999999988 4444332 2222 245899999999999652
Q ss_pred ccCHHHHHHHHHHcC---------CeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249 80 AVSKEEGEQFAKENG---------LLFLEASARTAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 80 ~v~~~~~~~~~~~~~---------~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
..++........+ ++++++||+++.|++++|++|.+.+.....+
T Consensus 123 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~ 175 (178)
T 2lkc_A 123 --NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEELK 175 (178)
T ss_dssp --CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred --CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhccc
Confidence 2333333333222 4799999999999999999999887665443
No 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.72 E-value=1.5e-17 Score=117.56 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=89.2
Q ss_pred eeeEeeecccc-----------hhhhhhchhhhccC-CcEEEEEEECCChHHHHHH-HHHHHH--------H-HHhcCCC
Q 031249 6 ESFFWSLLQAG-----------QESFRSITRSYYRG-AAGALLVYDITRRETFNHL-SSWLED--------A-RQHANPN 63 (163)
Q Consensus 6 ~~~l~d~Dt~G-----------~e~~~~~~~~~~~~-ad~~i~v~d~~~~~s~~~~-~~~~~~--------l-~~~~~~~ 63 (163)
.+.+|| ||| ++++..++..++++ ++++++||++.|..++..+ ..|... + ......+
T Consensus 45 ~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
T 2cxx_A 45 NHKIID--MPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 122 (190)
T ss_dssp TEEEEE--CCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred CEEEEE--CCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcC
Confidence 467787 999 89999999999988 8988888888888888776 456542 2 2222246
Q ss_pred CeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe-------EEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-------FLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 64 ~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~-------~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
.|+++|+||+|+.+.. .+++..+++.++++ ++++||+++.|++++|+++.+.+.+..
T Consensus 123 ~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 123 IPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp CCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred CceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 8999999999986543 56777888888864 799999999999999999998886543
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.69 E-value=4.7e-17 Score=132.83 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=93.7
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
+..+.||| |||++.|..++..+++++|++|+|||+++. +.+..|+..+.... ++.|+++|+||+|+.+.+.+..
T Consensus 97 ~~~~~i~D--t~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~ 170 (535)
T 3dpu_A 97 ECLFHFWD--FGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQ 170 (535)
T ss_dssp TCEEEEEC--CCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCH
T ss_pred eEEEEEEE--CCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCH
Confidence 35677777 999999999999999999999999998765 55677888888765 4689999999999988777888
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
+++..++...+.+++++||+++.||+++|+.+.+.+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 171 KKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp HHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTCT
T ss_pred HHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhcc
Confidence 888888888899999999999999999999998877543
No 119
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.68 E-value=1.1e-16 Score=113.66 Aligned_cols=109 Identities=15% Similarity=0.204 Sum_probs=81.8
Q ss_pred ceeeEeeecccc----------hhhhhhchhhhccCC---cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249 5 QESFFWSLLQAG----------QESFRSITRSYYRGA---AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN 71 (163)
Q Consensus 5 ~~~~l~d~Dt~G----------~e~~~~~~~~~~~~a---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n 71 (163)
..+.||| ||| +++|..++..+++.+ |++++|+|+++..++.... ++..+.. .+.|+++|+|
T Consensus 69 ~~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~n 142 (195)
T 1svi_A 69 DELHFVD--VPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIAT 142 (195)
T ss_dssp TTEEEEE--CCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEE
T ss_pred CcEEEEE--CCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEE
Confidence 3677888 999 899999999999887 9999999999877776532 2333333 3589999999
Q ss_pred CCCCCCCCccCH--HHHHH-HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 72 KCDLAHRRAVSK--EEGEQ-FAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 72 K~D~~~~~~v~~--~~~~~-~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
|+|+.+.+++.. +++.. +....+.+++++||+++.||+++|++|.+.+
T Consensus 143 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 143 KADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp CGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 999976544322 22222 2222356899999999999999999998765
No 120
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.68 E-value=6e-17 Score=111.41 Aligned_cols=105 Identities=14% Similarity=0.067 Sum_probs=77.4
Q ss_pred cceeeEeeecccchhh-------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 4 SQESFFWSLLQAGQES-------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~-------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
+..+.||| |||++. +...+..+++.+|++|+|||+++..+... .++...... .+.|+++|+||+|+.
T Consensus 48 ~~~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 48 RGRFLLVD--TGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDP 121 (161)
T ss_dssp TEEEEEEE--CGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSG
T ss_pred CceEEEEE--CCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccc
Confidence 45677888 999887 45567788999999999999998543322 222222222 248999999999986
Q ss_pred CCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 77 HRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 77 ~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
+.. +++..++ ..++ +++++||+++.|++++|+++.+.+
T Consensus 122 ~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 122 KHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp GGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred cch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 532 3334455 5677 799999999999999999998753
No 121
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.67 E-value=6.5e-18 Score=118.63 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=80.2
Q ss_pred ccceeeEeeecccchhhhhhc--------hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 3 FSQESFFWSLLQAGQESFRSI--------TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~--------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
++..+++|| |||++++... ...+++++|++++|||+++..++. ...|+..+.+....++|+++|+||+|
T Consensus 50 ~~~~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~D 126 (172)
T 2gj8_A 50 DGMPLHIID--TAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKAD 126 (172)
T ss_dssp TTEEEEEEE--CCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred CCeEEEEEE--CCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECcc
Confidence 355678888 9998653211 124689999999999999988876 34688887776555799999999999
Q ss_pred CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
+.+... .++...+.+++++||+++.||+++|++|.+.+
T Consensus 127 l~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 127 ITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp HHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred CCcchh-------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 844211 11222456799999999999999999998765
No 122
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.67 E-value=4.4e-17 Score=115.15 Aligned_cols=110 Identities=17% Similarity=0.134 Sum_probs=87.0
Q ss_pred cceeeEeeecccchhhhh------hchhhhcc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 4 SQESFFWSLLQAGQESFR------SITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~------~~~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
+..+++|| |||++++. .++..+++ .+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+
T Consensus 53 ~~~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl 124 (188)
T 2wjg_A 53 GEKFKVVD--LPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDL 124 (188)
T ss_dssp TEEEEEEE--CCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHH
T ss_pred CcEEEEEE--CCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhc
Confidence 55677887 99998875 45677775 5999999999876 4555667777765 35899999999998
Q ss_pred CCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 76 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 76 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
...+.+. .++..+++.++++++++||+++.|++++|+++.+.+...
T Consensus 125 ~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 125 AKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp HHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred cccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 6544443 456778888899999999999999999999998877543
No 123
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.65 E-value=4.7e-16 Score=118.91 Aligned_cols=111 Identities=15% Similarity=0.090 Sum_probs=89.8
Q ss_pred cceeeEeeecccchhh----------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031249 4 SQESFFWSLLQAGQES----------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 73 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~----------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~ 73 (163)
+..+.||| |||+.+ +...+..+++++|++++|+|+++..++.+...|++.+... +.|+++|+||+
T Consensus 58 ~~~i~lvD--TPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~ 132 (308)
T 3iev_A 58 EAQIIFLD--TPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKI 132 (308)
T ss_dssp TEEEEEEE--CCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECG
T ss_pred CCeEEEEE--CcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECc
Confidence 34555666 999844 4467788999999999999999988888877778877663 48999999999
Q ss_pred CCCCCCccCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 74 DLAHRRAVSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 74 D~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
|+...+.........+...++ .+++++||+++.|++++|+++.+.+
T Consensus 133 Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 133 DKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp GGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 997444555677777887775 6799999999999999999998766
No 124
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.64 E-value=5.8e-16 Score=109.61 Aligned_cols=109 Identities=14% Similarity=0.224 Sum_probs=80.8
Q ss_pred ceeeEeeecccc----------hhhhhhchhhhccCC---cEEEEEEECCChHHH--HHHHHHHHHHHHhcCCCCeEEEE
Q 031249 5 QESFFWSLLQAG----------QESFRSITRSYYRGA---AGALLVYDITRRETF--NHLSSWLEDARQHANPNMSIMLV 69 (163)
Q Consensus 5 ~~~~l~d~Dt~G----------~e~~~~~~~~~~~~a---d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~p~ilv 69 (163)
..+.+|| ||| ++.+..++..+++.+ |++++|+|+++..+. ..+..|+. .. +.|+++|
T Consensus 68 ~~~~i~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~---~~---~~p~i~v 139 (195)
T 3pqc_A 68 SKYYFVD--LPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMK---SL---NIPFTIV 139 (195)
T ss_dssp TTEEEEE--CCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---HT---TCCEEEE
T ss_pred CcEEEEE--CCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHH---Hc---CCCEEEE
Confidence 4577787 999 888999999998876 999999998875333 33333333 22 4899999
Q ss_pred eeCCCCCCCCc--cCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 70 GNKCDLAHRRA--VSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 70 ~nK~D~~~~~~--v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+||+|+.+... ...+++..++... .++++++||+++.||+++|++|.+.+.+
T Consensus 140 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 140 LTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp EECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 99999865322 2234555566553 3689999999999999999999887643
No 125
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.63 E-value=5.4e-16 Score=124.35 Aligned_cols=117 Identities=15% Similarity=0.059 Sum_probs=90.8
Q ss_pred ccceeeEeeecccc----------hhhhhhchhh-hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249 3 FSQESFFWSLLQAG----------QESFRSITRS-YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN 71 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G----------~e~~~~~~~~-~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n 71 (163)
++..++||| ||| +|+|..++.. +++.+|++|+|+|+++..+.. ...|+..+.. .++|+++|+|
T Consensus 241 ~~~~~~l~D--T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~---~~~~~ilv~N 314 (456)
T 4dcu_A 241 NQQEFVIVD--TAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE---AGKAVVIVVN 314 (456)
T ss_dssp TTEEEEETT--GGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH---TTCEEEEEEE
T ss_pred CCceEEEEE--CCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH---cCCCEEEEEE
Confidence 355677777 999 7888887765 889999999999998754322 2345555554 3589999999
Q ss_pred CCCCCCCCccCHHHHHHHHHHc-----CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249 72 KCDLAHRRAVSKEEGEQFAKEN-----GLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 72 K~D~~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
|+|+.+.+.+..+++...+... +.+++++||++|.||+++|+++.+.+......
T Consensus 315 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 315 KWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp CGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred ChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence 9999876666667777666654 57899999999999999999999887665433
No 126
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=1.8e-16 Score=114.72 Aligned_cols=102 Identities=16% Similarity=0.226 Sum_probs=77.1
Q ss_pred cceeeEeeecccchhhhhhchhhhccC----CcEEEEEEECC-ChHHHHHHHHHHHHHHHh----cCCCCeEEEEeeCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRG----AAGALLVYDIT-RRETFNHLSSWLEDARQH----ANPNMSIMLVGNKCD 74 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~----ad~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~ilv~nK~D 74 (163)
+..++||| |||++++..++..++++ +|++|+|||++ +..+|..+..|+..+... ...++|+++|+||+|
T Consensus 54 ~~~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 131 (218)
T 1nrj_B 54 GSGVTLVD--FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSE 131 (218)
T ss_dssp GSSCEEEE--CCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTT
T ss_pred CceEEEEE--CCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchH
Confidence 34678888 99999999999999988 99999999999 888999988888888654 235799999999999
Q ss_pred CCCCCccC------HHHHHHHHHHcCCeEEEEcCCCCCC
Q 031249 75 LAHRRAVS------KEEGEQFAKENGLLFLEASARTAQN 107 (163)
Q Consensus 75 ~~~~~~v~------~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (163)
+.+.+.+. .+++..++...+..++++||+++.+
T Consensus 132 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 132 LFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred hcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 97755443 3456667777778899999998765
No 127
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.62 E-value=6.9e-16 Score=115.27 Aligned_cols=108 Identities=19% Similarity=0.128 Sum_probs=84.5
Q ss_pred cceeeEeeecccchhhhhhc------hhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSI------TRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~------~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
+..+.||| |||+..+... ...|+ .++|++|+|+|+++.++.. .|+.++.+. +.|+++++||+|+
T Consensus 51 ~~~~~l~D--tpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~---~~pvilv~NK~Dl 122 (258)
T 3a1s_A 51 GYTINLID--LPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSL---YLLLEILEM---EKKVILAMTAIDE 122 (258)
T ss_dssp TEEEEEEE--CCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH---HHHHHHHTT---TCCEEEEEECHHH
T ss_pred CeEEEEEE--CCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH---HHHHHHHhc---CCCEEEEEECcCC
Confidence 45677888 9999887753 35666 5899999999999865433 455666543 5899999999998
Q ss_pred CCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 76 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 76 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
.+.+.+. .++..+++.++++++++||+++.|++++|+++.+.+.
T Consensus 123 ~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 123 AKKTGMK-IDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp HHHTTCC-BCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCccchH-HHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 6544444 2467788889999999999999999999999987653
No 128
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.61 E-value=5.5e-16 Score=116.66 Aligned_cols=107 Identities=17% Similarity=0.154 Sum_probs=84.7
Q ss_pred cceeeEeeecccchhhhh------hchhhhcc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 4 SQESFFWSLLQAGQESFR------SITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~------~~~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
+..++||| |||++++. .++..|+. ++|++|+|+|+++.+++ ..|..++.+ .+.|+++++||+|+
T Consensus 48 ~~~l~l~D--tpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl 119 (272)
T 3b1v_A 48 NKDLEIQD--LPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDV 119 (272)
T ss_dssp CTTEEEEE--CCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHH
T ss_pred CCeEEEEE--CCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhh
Confidence 45688888 99998886 46677776 69999999999986544 346666655 35899999999998
Q ss_pred CCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 76 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 76 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.+.+.+. .++..+++.++++++++||+++.||+++|+++.+.+
T Consensus 120 ~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 120 LDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp HHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred CCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 6544444 356678888899999999999999999999997654
No 129
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.61 E-value=1.3e-15 Score=121.50 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=87.6
Q ss_pred ccceeeEeeecccch----------hhhhhchh-hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249 3 FSQESFFWSLLQAGQ----------ESFRSITR-SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN 71 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~----------e~~~~~~~-~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n 71 (163)
++..++||| |||+ |+|..++. .+++.+|++++|+|+++..++++. .|+..+.. .++|+++|+|
T Consensus 221 ~~~~~~l~D--T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~N 294 (436)
T 2hjg_A 221 NQQEFVIVD--TAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVN 294 (436)
T ss_dssp TTEEEEETT--HHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEE
T ss_pred CCeEEEEEE--CCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEE
Confidence 355678887 9998 67776655 488999999999999998887775 56666654 3589999999
Q ss_pred CCCCCCCCccCHHHHHH-HHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 72 KCDLAHRRAVSKEEGEQ-FAKE----NGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 72 K~D~~~~~~v~~~~~~~-~~~~----~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
|+|+.+.+....++... +... .+.+++++||++|.||+++|+.+.+.+...
T Consensus 295 K~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 295 KWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp CGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence 99997655544444432 2232 357899999999999999999998887654
No 130
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.60 E-value=2.1e-15 Score=109.31 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=79.7
Q ss_pred cceeeEeeecccc----------hhhhhhchhhhccC---CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249 4 SQESFFWSLLQAG----------QESFRSITRSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG 70 (163)
Q Consensus 4 ~~~~~l~d~Dt~G----------~e~~~~~~~~~~~~---ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~ 70 (163)
+..+.||| ||| +++|..++..|++. +|++|||+|+++..+.. ...++..+.. .+.|+++|+
T Consensus 78 ~~~~~l~D--tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~ 151 (223)
T 4dhe_A 78 EPVAHLVD--LPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLL 151 (223)
T ss_dssp SCSEEEEE--CCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEE
T ss_pred CCcEEEEc--CCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEE
Confidence 45677888 999 67788888888877 78899999998753322 2334555544 358999999
Q ss_pred eCCCCCCCCccC--HHHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 71 NKCDLAHRRAVS--KEEGEQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 71 nK~D~~~~~~v~--~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
||+|+.+...+. .++....... .+.+++++||+++.||+++|++|.+.+....
T Consensus 152 nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 152 TKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred eccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 999986533221 1222222322 4567999999999999999999988875543
No 131
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.58 E-value=4.4e-15 Score=119.61 Aligned_cols=111 Identities=16% Similarity=0.059 Sum_probs=72.9
Q ss_pred ccceeeEeeecccchhhhhhch--------hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 3 FSQESFFWSLLQAGQESFRSIT--------RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~--------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
++.++.||| |||++++...+ ..+++.+|++|+|||+++..++..+..+...+.... ++|+++|+||+|
T Consensus 279 ~g~~l~liD--T~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~D 354 (476)
T 3gee_A 279 DKTMFRLTD--TAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLD 354 (476)
T ss_dssp TTEEEEEEC----------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTT
T ss_pred CCeEEEEEE--CCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcC
Confidence 466788888 99998877554 347899999999999999887754333333332222 589999999999
Q ss_pred CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+.+...+ ....+......+++++||+++.||+++|++|.+.+.
T Consensus 355 l~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 355 RAANADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp SCTTTHH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred CCCccch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 9764433 223344432467999999999999999999988775
No 132
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.57 E-value=5.8e-16 Score=115.59 Aligned_cols=107 Identities=14% Similarity=0.030 Sum_probs=81.0
Q ss_pred ccceeeEeeecccchhhhhh----------chhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249 3 FSQESFFWSLLQAGQESFRS----------ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG 70 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~----------~~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~ 70 (163)
++..+.||| |||+..+.. ++..|+ +++|++|+|+|+++.+++..+. ..+.. .+.|+++|+
T Consensus 46 ~~~~~~lvD--tpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~---~~l~~---~~~pvilv~ 117 (256)
T 3iby_A 46 GEHLIEITD--LPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLT---SQLFE---LGKPVVVAL 117 (256)
T ss_dssp TTEEEEEEE--CCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHH---HHHTT---SCSCEEEEE
T ss_pred CCeEEEEEe--CCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHH---HHHHH---cCCCEEEEE
Confidence 455778888 999987764 566777 8999999999999876554433 33322 358999999
Q ss_pred eCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 71 nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
||+|+.+.+.+. .....+.+..+++++++||+++.|++++|+++.+.
T Consensus 118 NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 118 NMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred EChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 999985543332 22445777889999999999999999999999764
No 133
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.57 E-value=2.1e-14 Score=111.75 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=88.9
Q ss_pred cceeeEeeecccchhhhh---------hchhhhccCCcEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249 4 SQESFFWSLLQAGQESFR---------SITRSYYRGAAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNK 72 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~---------~~~~~~~~~ad~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ilv~nK 72 (163)
+..+++|| |||...+. .....+...+|++++|+|+++.. ++.....|+..+..... +.|+++|+||
T Consensus 213 ~~~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK 289 (357)
T 2e87_A 213 YFRYQIID--TPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINK 289 (357)
T ss_dssp TEEEEEEE--CTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECC
T ss_pred CceEEEEe--CCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence 34577787 99975432 12224556799999999998876 67777788888877543 6899999999
Q ss_pred CCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 73 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 73 ~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
+|+..... .+++..++...+++++++||++|.|++++|+++.+.+.....
T Consensus 290 ~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~~~ 339 (357)
T 2e87_A 290 IDVADEEN--IKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPLAE 339 (357)
T ss_dssp TTTCCHHH--HHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred cccCChHH--HHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHHHh
Confidence 99865332 245566677788899999999999999999999998866533
No 134
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.56 E-value=5.5e-15 Score=112.76 Aligned_cols=98 Identities=18% Similarity=0.129 Sum_probs=81.5
Q ss_pred chhhhhhchhhhccCCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC-HHHHHHHHHHc
Q 031249 16 GQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-KEEGEQFAKEN 93 (163)
Q Consensus 16 G~e~~~~~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~-~~~~~~~~~~~ 93 (163)
.++++..+.+.+++++|++++|||++++. ++..+..|+..+.. .++|++||+||+|+.++.++. .++...+++..
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~ 141 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA 141 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHC
Confidence 38999999999999999999999999886 88888899987765 358999999999986533222 34555666777
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHH
Q 031249 94 GLLFLEASARTAQNVEEAFIKTA 116 (163)
Q Consensus 94 ~~~~~~~Sa~~~~~i~~lf~~l~ 116 (163)
+++++++||+++.|++++|..+.
T Consensus 142 g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 142 GYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp TCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHhhcc
Confidence 89999999999999999998764
No 135
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.55 E-value=1e-14 Score=112.97 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=88.2
Q ss_pred ceeeEeeecccchhh----hhhchhhhcc---CCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcC--CCCeEEEEeeC
Q 031249 5 QESFFWSLLQAGQES----FRSITRSYYR---GAAGALLVYDITR---RETFNHLSSWLEDARQHAN--PNMSIMLVGNK 72 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~----~~~~~~~~~~---~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK 72 (163)
..+.||| |||... +..+...|++ .+|++|+|+|+++ ..+++++..|+.++..+.. ..+|+++|+||
T Consensus 206 ~~~~l~D--tPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK 283 (342)
T 1lnz_A 206 RSFVMAD--LPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANK 283 (342)
T ss_dssp CEEEEEE--HHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEEC
T ss_pred ceEEEec--CCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEEC
Confidence 5678888 999654 4446666655 4999999999998 7889999999999987653 46899999999
Q ss_pred CCCCCCCccCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 73 CDLAHRRAVSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 73 ~D~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+|+.+. .+....+.+.+. .+++++||+++.|++++|.+|.+.+.
T Consensus 284 ~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 284 MDMPEA----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp TTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred ccCCCC----HHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 998542 244566777766 67999999999999999999988764
No 136
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.54 E-value=2.7e-15 Score=119.18 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=84.1
Q ss_pred eeeEeeecccchhhhhhc-------hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031249 6 ESFFWSLLQAGQESFRSI-------TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 78 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~-------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~ 78 (163)
++.||| |||+++|..+ +..+++++|++|+|||+.... ....|+..+.+. ++|+++|+||+|+...
T Consensus 84 ~l~liD--TpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~ 155 (423)
T 3qq5_A 84 PVTLVD--TPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGE 155 (423)
T ss_dssp EEEEEE--CSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTC
T ss_pred eEEEEE--CcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCc
Confidence 677888 9999988765 455889999999999984433 334577777665 4899999999999765
Q ss_pred CccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 79 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 79 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
... +....+.+.++++++++||+++.|++++|++|.+.+.
T Consensus 156 ~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 156 KAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp CCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred cHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 443 5566677777889999999999999999999988774
No 137
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.54 E-value=3.4e-14 Score=117.11 Aligned_cols=107 Identities=21% Similarity=0.243 Sum_probs=84.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+.||| |||+++|...+..+++.+|++|+|+|+++..+++....|...+. .++|+++++||+|+.... ..+.
T Consensus 72 ~l~liD--TPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v 143 (599)
T 3cb4_D 72 QLNFID--TPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERV 143 (599)
T ss_dssp EEEEEE--CCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHH
T ss_pred EEEEEE--CCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHH
Confidence 455666 99999999999999999999999999998766666666655443 248999999999996532 2334
Q ss_pred HHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLL---FLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 86 ~~~~~~~~~~~---~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
..++...+++. ++++||+++.||+++|+++++.+.
T Consensus 144 ~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 144 AEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp HHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 45666777774 899999999999999999887653
No 138
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.53 E-value=3e-15 Score=112.66 Aligned_cols=108 Identities=13% Similarity=0.090 Sum_probs=80.5
Q ss_pred ccceeeEeeecccchhhhhh----------chhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249 3 FSQESFFWSLLQAGQESFRS----------ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG 70 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~----------~~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~ 70 (163)
.+.++.||| |||+..+.. ++..|+ +++|++|+|+|+++.+.... +...+.+. ++|+++|+
T Consensus 48 ~~~~~~liD--tpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~---~~p~ivv~ 119 (274)
T 3i8s_A 48 TDHQVTLVD--LPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLY---LTLQLLEL---GIPCIVAL 119 (274)
T ss_dssp SSCEEEEEE--CCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH---TCCEEEEE
T ss_pred CCCceEEEE--CcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHH---HHHHHHhc---CCCEEEEE
Confidence 356788888 999888763 234444 79999999999998655443 44444443 48999999
Q ss_pred eCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 71 nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
||+|+.+.+.+. .....+.+.++++++++||+++.|++++|+++.+.+
T Consensus 120 NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 120 NMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp ECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred ECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 999985533322 234567778899999999999999999999887654
No 139
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.53 E-value=5.5e-14 Score=115.81 Aligned_cols=107 Identities=21% Similarity=0.243 Sum_probs=84.4
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+.||| |||+++|...+..+++.+|++|+|+|+++..+++....|..... .++|+++++||+|+.... ....
T Consensus 74 ~inliD--TPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v 145 (600)
T 2ywe_A 74 KLHLID--TPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRV 145 (600)
T ss_dssp EEEEEC--CCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHH
T ss_pred EEEEEE--CCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHH
Confidence 344555 99999999999999999999999999999877776666655443 358999999999996532 2233
Q ss_pred HHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLL---FLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 86 ~~~~~~~~~~~---~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
..++...+++. ++++||+++.||+++|+++++.+.
T Consensus 146 ~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 45566666764 899999999999999999887653
No 140
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.52 E-value=6.5e-14 Score=110.68 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=83.7
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-- 82 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~-- 82 (163)
..+.||| |||+++|...+..++..+|++|+|+|+++..++.....|+..+.... ..|+++++||+|+.+.....
T Consensus 75 ~~~~iiD--tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~ 150 (403)
T 3sjy_A 75 RRISFID--APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQ 150 (403)
T ss_dssp EEEEEEE--CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHH
T ss_pred ceEEEEE--CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHH
Confidence 3566666 99999999999999999999999999998766667777777665543 25899999999986532211
Q ss_pred HHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 83 KEEGEQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 83 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.++...+.... +++++++||+++.|++++|+.|.+.+
T Consensus 151 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 151 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 12222233222 46799999999999999999987654
No 141
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.52 E-value=5.9e-14 Score=113.17 Aligned_cols=108 Identities=18% Similarity=0.069 Sum_probs=82.0
Q ss_pred ccceeeEeeecccchh-hhhh--------chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031249 3 FSQESFFWSLLQAGQE-SFRS--------ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 73 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e-~~~~--------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~ 73 (163)
++.++.||| |||.+ ++.. ....+++.+|++|+|||+++..++++. .+++.+ .++|+++|+||+
T Consensus 289 ~g~~~~l~D--TaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~-~il~~l-----~~~piivV~NK~ 360 (482)
T 1xzp_A 289 RGILFRIVD--TAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR-KILERI-----KNKRYLVVINKV 360 (482)
T ss_dssp TTEEEEEEE--SSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH-HHHHHH-----TTSSEEEEEEEC
T ss_pred CCeEEEEEE--CCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH-HHHHHh-----cCCCEEEEEECc
Confidence 466788888 99988 6543 245688999999999999988777653 233333 358999999999
Q ss_pred CCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 74 D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
|+.+. +..+++..++. .+.+++++||+++.|++++|++|.+.+..
T Consensus 361 DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 361 DVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp SSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred ccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 99652 44555554432 34689999999999999999999987764
No 142
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.50 E-value=1.2e-13 Score=109.40 Aligned_cols=107 Identities=22% Similarity=0.225 Sum_probs=73.6
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC----hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR----RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~----~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~ 80 (163)
..+.||| |||+++|...+...+..+|++|+|+|+++ .++++.+.. +... ...|+++++||+|+.+...
T Consensus 81 ~~i~iiD--tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~ 152 (408)
T 1s0u_A 81 RRVSFVD--SPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQ 152 (408)
T ss_dssp EEEEEEE--CSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTT
T ss_pred cEEEEEE--CCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHH
Confidence 3466666 99999999888888889999999999985 455554432 2222 1258999999999976433
Q ss_pred --cCHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 81 --VSKEEGEQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 81 --v~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
...+++..++... +.+++++||+++.|+++++++|.+.+
T Consensus 153 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 153 AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 2345566666543 56799999999999999999987654
No 143
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.50 E-value=1.8e-14 Score=108.14 Aligned_cols=110 Identities=21% Similarity=0.150 Sum_probs=83.7
Q ss_pred ccceeeEeeecccchhhhhh------chhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 3 FSQESFFWSLLQAGQESFRS------ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~------~~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
.+..+.||| |||+..+.. ++..|+ .++|++++|+|+++.. ....|+..+.... ..|+++|+||+|
T Consensus 48 ~~~~~~l~D--tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~D 120 (271)
T 3k53_A 48 REKEFLVVD--LPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFD 120 (271)
T ss_dssp TTEEEEEEE--CCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHH
T ss_pred CCceEEEEe--CCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChh
Confidence 345677888 999988776 566777 7899999999998853 3334555554432 289999999999
Q ss_pred CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+.+.+.+.. ....+.+.++++++++||+++.|+.++|+.+...+.
T Consensus 121 l~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 121 LLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp HHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred cCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 754333332 266678888999999999999999999999987753
No 144
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.49 E-value=1.9e-14 Score=109.68 Aligned_cols=107 Identities=19% Similarity=0.132 Sum_probs=75.8
Q ss_pred cceeeEeeecccchhh--------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHH-HHHHHhcCCCCeEEEEeeCCC
Q 031249 4 SQESFFWSLLQAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~--------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~ilv~nK~D 74 (163)
+..+.||| |||..+ +......+++++|+++||||+++..+.. ..|+ +.+.+.. ++.|+++|+||+|
T Consensus 54 ~~~l~l~D--TpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~D 128 (301)
T 1wf3_A 54 RRQIVFVD--TPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLD 128 (301)
T ss_dssp TEEEEEEE--CCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGG
T ss_pred CcEEEEec--CccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcc
Confidence 34556666 999765 5566778899999999999998865443 2443 4554432 4689999999999
Q ss_pred CCCCCccCHHHHHHHHHHc-C-CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKEN-G-LLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
+.+... +....+..+ + .+++++||+++.|++++|+.+.+.+
T Consensus 129 l~~~~~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 129 AAKYPE----EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp GCSSHH----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred cCCchH----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 865322 022233332 3 4689999999999999999987654
No 145
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.49 E-value=1.9e-14 Score=103.55 Aligned_cols=104 Identities=8% Similarity=-0.011 Sum_probs=68.8
Q ss_pred cccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHH---hc--CCCCeEEEEeeCC-CCCCCCccCHHHH
Q 031249 13 LQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ---HA--NPNMSIMLVGNKC-DLAHRRAVSKEEG 86 (163)
Q Consensus 13 Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~---~~--~~~~p~ilv~nK~-D~~~~~~v~~~~~ 86 (163)
+.+||++++++|+.||.++|++|||+|.+|.+-++ ....+.++.. .. ..+.|++|++||. |++ ...+..++
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI 184 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYL 184 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHH
Confidence 35689999999999999999999999999875443 3333322222 11 1468999999995 674 35666665
Q ss_pred HHHHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 87 EQFAKE----NGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 87 ~~~~~~----~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.+...- ....++.|||.+|+|+.+.++||++.+
T Consensus 185 ~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred HHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 544322 223489999999999999999998655
No 146
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.49 E-value=8.8e-14 Score=111.04 Aligned_cols=109 Identities=19% Similarity=0.194 Sum_probs=77.9
Q ss_pred ccceeeEeeecccchhh---------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031249 3 FSQESFFWSLLQAGQES---------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 73 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~---------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~ 73 (163)
++..++||| |||.+. +...+..++++||++|||+|+++..+..+ .++..+.+. .++|++||+||+
T Consensus 47 ~~~~~~l~D--T~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~ 120 (439)
T 1mky_A 47 YGKTFKLVD--TCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKA 120 (439)
T ss_dssp TTEEEEEEE--CTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESC
T ss_pred CCeEEEEEE--CCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCC
Confidence 456788888 999764 44567789999999999999987655433 222222222 248999999999
Q ss_pred CCCCCCccCHHHH-HHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 74 DLAHRRAVSKEEG-EQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 74 D~~~~~~v~~~~~-~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
|+.+. . ..++ ..+. ..++ +++++||++|.|+.++|+++...+.+
T Consensus 121 D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 121 ENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp CSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 98431 1 1222 3333 4566 68999999999999999999988754
No 147
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.48 E-value=5.2e-13 Score=110.10 Aligned_cols=109 Identities=24% Similarity=0.238 Sum_probs=79.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
.+.||| |||+++|..++..+++.+|++|+|+|+++ +++++.+. .+.. .++|+++++||+|+.......
T Consensus 71 ~i~liD--TPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~ 141 (594)
T 1g7s_A 71 GLFFID--TPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVH 141 (594)
T ss_dssp EEEEEC--CCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCC
T ss_pred CEEEEE--CCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccc
Confidence 467777 99999999999999999999999999999 77776543 2333 358999999999985421100
Q ss_pred -------------H---H-------HHHHHHHHcC---------------CeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 83 -------------K---E-------EGEQFAKENG---------------LLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 83 -------------~---~-------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
. + +....+.+.+ .+++++||++|.|+.++++++...+....
T Consensus 142 ~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 142 EGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp TTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence 0 0 1111122222 26999999999999999999988776443
No 148
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.48 E-value=1.8e-13 Score=110.51 Aligned_cols=108 Identities=18% Similarity=0.080 Sum_probs=81.7
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~ 80 (163)
+..+.||| |||+++|...+..++..+|++|+|+|+++ +++++.+. .+.. .++|+++++||+|+.+...
T Consensus 72 ~~~i~iiD--tPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~ 142 (482)
T 1wb1_A 72 NYRITLVD--APGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEE 142 (482)
T ss_dssp TEEEEECC--CSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHH
T ss_pred CEEEEEEE--CCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchh
Confidence 44667777 99999999999999999999999999988 55555432 2322 2478899999999865211
Q ss_pred --cCHHHHHHHHHHc----CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 81 --VSKEEGEQFAKEN----GLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 81 --v~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
...+++..++... +.+++++||+++.|+++++++|.+.+.
T Consensus 143 ~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 143 IKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 1123445555555 467999999999999999999988765
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.44 E-value=3.8e-13 Score=108.58 Aligned_cols=104 Identities=14% Similarity=0.050 Sum_probs=69.1
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHH------HHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNH------LSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~------~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
+..+.||| |||+++|...+..+++.+|++|+|+|+++..++.. ....+..+... ...|++||+||+|+.+
T Consensus 110 ~~~~~iiD--TPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 110 RANFTIVD--APGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVD 185 (483)
T ss_dssp SCEEEEEC--CCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGT
T ss_pred CceEEEEE--CCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCccc
Confidence 34566666 99999999999999999999999999998654322 22222222222 2257999999999865
Q ss_pred CCccCHHH----HHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q 031249 78 RRAVSKEE----GEQFAKENG-----LLFLEASARTAQNVEEA 111 (163)
Q Consensus 78 ~~~v~~~~----~~~~~~~~~-----~~~~~~Sa~~~~~i~~l 111 (163)
.++...++ +..++...+ ++++++||++|.|+.++
T Consensus 186 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 186 WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred chHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 33332333 333344433 46999999999999864
No 150
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.44 E-value=1.3e-13 Score=110.73 Aligned_cols=107 Identities=17% Similarity=0.091 Sum_probs=69.9
Q ss_pred ccceeeEeeecccchhhhhhchh--------hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 3 FSQESFFWSLLQAGQESFRSITR--------SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~--------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
++.++.||| |||.+.+...+. .+++.+|++++|+|+++..+... ..|++.+. ..|+++|+||+|
T Consensus 270 ~g~~v~liD--T~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~D 341 (462)
T 3geh_A 270 GGIPVQVLD--TAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKID 341 (462)
T ss_dssp TTEEEEECC----------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTT
T ss_pred CCEEEEEEE--CCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCC
Confidence 566788888 999877655433 36889999999999998766554 34555442 269999999999
Q ss_pred CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+.....+. ....+. .+.+++++||+++.|++++|++|.+.+..
T Consensus 342 l~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 342 LVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp SSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred CCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 96644332 111111 34679999999999999999999887654
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.43 E-value=2.6e-13 Score=107.43 Aligned_cols=107 Identities=18% Similarity=0.204 Sum_probs=76.9
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC----hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR----RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~----~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~ 80 (163)
..+.||| |||+++|...+...+..+|++|+|+|+++ .++++.+.. +.... ..|+++++||+|+.+...
T Consensus 83 ~~i~iiD--tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~ 154 (410)
T 1kk1_A 83 RRVSFID--APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEK 154 (410)
T ss_dssp EEEEEEE--CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHH
T ss_pred cEEEEEE--CCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHH
Confidence 3456666 99999999888888889999999999985 445554432 22222 258999999999865321
Q ss_pred --cCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 81 --VSKEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 81 --v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
...+++..++.. .+++++++||+++.|+++++++|...+
T Consensus 155 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 155 ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 122344445543 356899999999999999999987644
No 152
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.43 E-value=6.2e-14 Score=111.82 Aligned_cols=107 Identities=13% Similarity=0.062 Sum_probs=73.5
Q ss_pred ccceeeEeeecccchh--------hhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 3 FSQESFFWSLLQAGQE--------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e--------~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
.+..+.||| |||++ ++...+..+++.+|++|||+|+.+..++.+ .++..+.+. .++|++||+||+|
T Consensus 49 ~~~~~~l~D--T~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D 122 (436)
T 2hjg_A 49 LNYDFNLID--TGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLD 122 (436)
T ss_dssp CSSCCEEEC-----------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCC
T ss_pred CCceEEEEE--CCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECcc
Confidence 456788888 99985 677888899999999999999988766554 333333322 4689999999999
Q ss_pred CCCCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+.+... ++..+. ..++ +++++||++|.|+.++|+++.+.+.
T Consensus 123 ~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 123 NTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp C---------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred Cccchh----hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 864321 111122 3455 6899999999999999999987764
No 153
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.43 E-value=2.6e-13 Score=106.16 Aligned_cols=111 Identities=7% Similarity=-0.028 Sum_probs=81.5
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeE-EEEee-CCCCCCCCcc
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGN-KCDLAHRRAV 81 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ilv~n-K~D~~~~~~v 81 (163)
+..+.||| |||+++|.......++.+|++|+|+| ++ ..+....+++..+... ++|. ++++| |+|+ +...+
T Consensus 59 ~~~i~iiD--tPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~ 130 (370)
T 2elf_A 59 GRNMVFVD--AHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAI 130 (370)
T ss_dssp SSEEEEEE--CTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHH
T ss_pred CeEEEEEE--CCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHH
Confidence 45677777 99999998888888999999999999 54 3344455566655543 3676 88899 9998 43222
Q ss_pred CH--HHHHHHHHHcC---CeEEE--EcCCC---CCCHHHHHHHHHHHHHHH
Q 031249 82 SK--EEGEQFAKENG---LLFLE--ASART---AQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 82 ~~--~~~~~~~~~~~---~~~~~--~Sa~~---~~~i~~lf~~l~~~~~~~ 122 (163)
.. +++..+++..+ +++++ +||++ +.|++++++.|.+.+...
T Consensus 131 ~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 131 DELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence 11 34455554443 67999 99999 999999999998876654
No 154
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.43 E-value=2.7e-13 Score=108.27 Aligned_cols=105 Identities=22% Similarity=0.197 Sum_probs=73.1
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHH---HH---HHHHHHHHHHHhcCCCCe-EEEEeeCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLSSWLEDARQHANPNMS-IMLVGNKCDLA 76 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~ 76 (163)
+..+.||| |||+++|...+..+++.+|++|||+|+++... |. ...+++..+.. .++| +++++||+|+.
T Consensus 94 ~~~~~iiD--TPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 94 KKHFTILD--APGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDP 168 (439)
T ss_pred CeEEEEEE--CCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCc
Confidence 34566666 99999999999999999999999999988532 21 12222233322 2466 99999999985
Q ss_pred CCC------ccCHHHHHHHHHHcC------CeEEEEcCCCCCCHHHHHH
Q 031249 77 HRR------AVSKEEGEQFAKENG------LLFLEASARTAQNVEEAFI 113 (163)
Q Consensus 77 ~~~------~v~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~lf~ 113 (163)
... +...++...+++..+ ++++++||++|.|+.++++
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 311 111234445555555 4699999999999999766
No 155
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.43 E-value=5.1e-14 Score=112.30 Aligned_cols=107 Identities=17% Similarity=0.168 Sum_probs=76.7
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc----CCC-CeEEEEeeCCCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA----NPN-MSIMLVGNKCDLAHR 78 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~-~p~ilv~nK~D~~~~ 78 (163)
+..+.||| |||+++|...+..+++.+|++|+|+|+++ .+|+.+..|..+..+.. ..+ .|+++++||+|+.+.
T Consensus 83 ~~~~~iiD--tpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 83 KYFFTIID--APGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp SCEEEECC--CSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred CeEEEEEE--CCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 34566666 99999999999999999999999999998 67775443322222211 013 368999999998652
Q ss_pred C------ccCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q 031249 79 R------AVSKEEGEQFAKENG-----LLFLEASARTAQNVEEAFI 113 (163)
Q Consensus 79 ~------~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~lf~ 113 (163)
. +...+++..++...+ ++++++||+++.|+.+++.
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 112345666777666 5699999999999986654
No 156
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.42 E-value=2.6e-14 Score=116.43 Aligned_cols=111 Identities=19% Similarity=0.199 Sum_probs=78.6
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc-C
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-S 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v-~ 82 (163)
+..+.||| |||+++|..++..+++.+|++|||+|+++....... .++..+. ..++|+++++||+|+.+.... .
T Consensus 51 g~~i~~iD--TPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~-e~l~~~~---~~~vPiIVViNKiDl~~~~~~~v 124 (537)
T 3izy_P 51 GEKITFLD--TPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV-ESIQHAK---DAHVPIVLAINKCDKAEADPEKV 124 (537)
T ss_dssp SSCCBCEE--CSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHH-HHHHHHH---TTTCCEEECCBSGGGTTTSCCSS
T ss_pred CCEEEEEE--CCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHH-HHHHHHH---HcCCcEEEEEecccccccchHHH
Confidence 45677777 999999999999999999999999999985444332 2223333 245899999999998642211 1
Q ss_pred HHHHHHH---HHHc--CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 83 KEEGEQF---AKEN--GLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 83 ~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
..+...+ +..+ .++++++||++|.|++++|+++...+.
T Consensus 125 ~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 125 KKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp SSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred HHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 1111111 1112 246999999999999999999987653
No 157
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.42 E-value=7.3e-13 Score=107.93 Aligned_cols=68 Identities=21% Similarity=0.179 Sum_probs=54.0
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
+..+.||| |||+++|...+..+++.+|++|+|+|+++..+..... ++..+.. .++|+++|+||+|+..
T Consensus 81 ~~~i~liD--TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 81 DYLINLLD--TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp TEEEEEEC--CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT---TTCCEEEEEECTTSCC
T ss_pred CEEEEEEE--CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEeCCCCcc
Confidence 44667777 9999999999999999999999999999866555543 3344433 3589999999999854
No 158
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.42 E-value=4.4e-14 Score=113.64 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=64.8
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRR 79 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~ 79 (163)
+..+.||| |||+++|...+..+++.+|++|||+|+++. .+|+...++.+.+......++| +++++||+|+.+..
T Consensus 120 ~~~~~iiD--tPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 120 HRRFSLLD--APGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp SEEEEECC--CCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred CeEEEEEE--CCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence 44566776 999999999999999999999999999986 2343222333333222223476 99999999985411
Q ss_pred ------ccCHHHHHHHHHHc-C------CeEEEEcCCCCCCHHHHHH
Q 031249 80 ------AVSKEEGEQFAKEN-G------LLFLEASARTAQNVEEAFI 113 (163)
Q Consensus 80 ------~v~~~~~~~~~~~~-~------~~~~~~Sa~~~~~i~~lf~ 113 (163)
....+++..++... + ++++++||++|.|+.++|+
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 01123456666665 4 4599999999999988763
No 159
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.41 E-value=2.7e-13 Score=108.13 Aligned_cols=106 Identities=17% Similarity=0.087 Sum_probs=76.1
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc--c
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--V 81 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~--v 81 (163)
+..+.||| |||+++|...+..+++.+|++|+|+|+++.... ....++..+.... ..|+++++||+|+.+... +
T Consensus 103 ~~~~~iiD--tpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 103 KRKFIIAD--TPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLLG--IKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SEEEEEEE--CCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHTT--CCEEEEEEECTTTTTSCHHHH
T ss_pred CceEEEEE--CCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcC--CCeEEEEEEcCcCCcccHHHH
Confidence 34567777 999999999899999999999999999885422 2333444443322 236999999999965211 1
Q ss_pred --CHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHHH
Q 031249 82 --SKEEGEQFAKENG-----LLFLEASARTAQNVEEAFIK 114 (163)
Q Consensus 82 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~lf~~ 114 (163)
..++...+++.++ .+++++||++|.|+.++|..
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 1344556677777 56999999999999986543
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.40 E-value=1.9e-13 Score=108.08 Aligned_cols=98 Identities=16% Similarity=0.122 Sum_probs=72.7
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCcc-
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV- 81 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v- 81 (163)
+..+.||| |||+++|...+..+++.+|++|+|+|+++.... ....++..+... ++| +++++||+|+.+..+.
T Consensus 74 ~~~~~iiD--tpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~ 147 (405)
T 2c78_A 74 KRHYSHVD--CPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELL 147 (405)
T ss_dssp SCEEEEEE--CCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHH
T ss_pred CeEEEEEE--CCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHH
Confidence 34677777 999999999999999999999999999886433 344566555543 477 8999999998642211
Q ss_pred --CHHHHHHHHHHcC-----CeEEEEcCCCCCC
Q 031249 82 --SKEEGEQFAKENG-----LLFLEASARTAQN 107 (163)
Q Consensus 82 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~ 107 (163)
..+++..++...+ .+++++||+++.|
T Consensus 148 ~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 148 DLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 1234556676665 5799999999877
No 161
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.40 E-value=4.3e-13 Score=100.84 Aligned_cols=105 Identities=7% Similarity=-0.045 Sum_probs=73.7
Q ss_pred cccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHH---HHH-Hhc-CCCCeEEEEeeC-CCCCCCCccCHHHH
Q 031249 13 LQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE---DAR-QHA-NPNMSIMLVGNK-CDLAHRRAVSKEEG 86 (163)
Q Consensus 13 Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~---~l~-~~~-~~~~p~ilv~nK-~D~~~~~~v~~~~~ 86 (163)
|.+||++++++|+.|+.++|++|||+|++|.+.++ ....+. .+. +.. ..+.|++|++|| .|++. ..+..++
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI 269 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYL 269 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHH
Confidence 35789999999999999999999999999976443 222222 222 211 256899999997 58743 4666665
Q ss_pred HHHHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 87 EQFAKE----NGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 87 ~~~~~~----~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
.+...- ....++.|||.+|+|+.+.++||++.+.
T Consensus 270 ~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 270 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 544322 2234899999999999999999987763
No 162
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.40 E-value=4.3e-13 Score=105.82 Aligned_cols=108 Identities=17% Similarity=0.100 Sum_probs=76.2
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCcc--
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV-- 81 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v-- 81 (163)
..+.||| |||+++|...+..+++.+|++|+|+|+++....+. .+++..+... ++| +++++||+|+.+..+.
T Consensus 66 ~~~~iiD--tpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~ 139 (397)
T 1d2e_A 66 RHYAHTD--CPGHADYVKNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVE 139 (397)
T ss_dssp CEEEEEE--CSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHH
T ss_pred eEEEEEE--CCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCeEEEEEECcccCCCHHHHH
Confidence 4567777 99999999988999999999999999998533222 2333444332 477 7899999998642211
Q ss_pred -CHHHHHHHHHHcC-----CeEEEEcCCCCCC----------HHHHHHHHHHH
Q 031249 82 -SKEEGEQFAKENG-----LLFLEASARTAQN----------VEEAFIKTAAK 118 (163)
Q Consensus 82 -~~~~~~~~~~~~~-----~~~~~~Sa~~~~~----------i~~lf~~l~~~ 118 (163)
..+++..+++.++ ++++++||+++.| +.++|+.|.+.
T Consensus 140 ~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~ 192 (397)
T 1d2e_A 140 LVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (397)
T ss_dssp HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence 1245666777766 4799999998764 66666666543
No 163
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.40 E-value=3.4e-12 Score=99.66 Aligned_cols=117 Identities=21% Similarity=0.091 Sum_probs=82.4
Q ss_pred ccceeeEeeecccch---------hhhhhchhhhccCCcEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249 3 FSQESFFWSLLQAGQ---------ESFRSITRSYYRGAAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGN 71 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~---------e~~~~~~~~~~~~ad~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ilv~n 71 (163)
++.++.+|| |+|. +.|...+. .+..+|++++|+|++++. .+..+..|.+.+......+.|+++|+|
T Consensus 224 ~g~~v~l~D--T~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N 300 (364)
T 2qtf_A 224 NNRKIMLVD--TVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN 300 (364)
T ss_dssp TTEEEEEEE--CCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE
T ss_pred CCEEEEEEe--CCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE
Confidence 456778888 9996 44554444 578999999999998876 556665566655554335689999999
Q ss_pred CCCCCCCCccC-HHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 72 KCDLAHRRAVS-KEEGEQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 72 K~D~~~~~~v~-~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
|+|+.+..... ...+..++... +.+++++||+++.|++++++.|.+.+...
T Consensus 301 K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 301 KIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 99986532100 11233344544 23689999999999999999998876554
No 164
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.38 E-value=3.4e-12 Score=101.86 Aligned_cols=114 Identities=17% Similarity=0.089 Sum_probs=77.2
Q ss_pred ccceeeEeeecccchhhhhhch------------hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249 3 FSQESFFWSLLQAGQESFRSIT------------RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG 70 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~------------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~ 70 (163)
+|..+.+|| |||.+++..+. ..+++.+|++++|+|+++..++.+. .+...+.. .+.|+++++
T Consensus 226 ~g~~~~l~D--t~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~ 299 (439)
T 1mky_A 226 DGRKYVFVD--TAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVF 299 (439)
T ss_dssp TTEEEEESS--CSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEE
T ss_pred CCEEEEEEE--CCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEE
Confidence 455677777 99986543321 3467889999999999886665542 23333333 358999999
Q ss_pred eCCCCCCCCccCHHHHHH-HHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 71 NKCDLAHRRAVSKEEGEQ-FAKE----NGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 71 nK~D~~~~~~v~~~~~~~-~~~~----~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
||+|+.+.+....++... +... .+.+++++||++|.||+++|+.+.+.+...
T Consensus 300 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 300 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp ECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 999987654444444432 2232 356799999999999999999998876554
No 165
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.36 E-value=2e-12 Score=91.41 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=62.8
Q ss_pred cceeeEeeecccchhhhhhchhhhccC----CcEEEEEEECC-ChHHHHHHHHHHHHHHHhc----CCCCeEEEEeeCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRG----AAGALLVYDIT-RRETFNHLSSWLEDARQHA----NPNMSIMLVGNKCD 74 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~----ad~~i~v~d~~-~~~s~~~~~~~~~~l~~~~----~~~~p~ilv~nK~D 74 (163)
+..+.||| |||++.+...+..+++. +|++|||||++ +..++..+..|+..+.... ..+.|+++|+||+|
T Consensus 90 ~~~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 167 (193)
T 2ged_A 90 GSGVTLVD--FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSE 167 (193)
T ss_dssp CTTCSEEE--ETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTT
T ss_pred CCeEEEEE--CCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchH
Confidence 45678888 99999999888888876 89999999999 8999999988888876542 24699999999999
Q ss_pred CCCCCc
Q 031249 75 LAHRRA 80 (163)
Q Consensus 75 ~~~~~~ 80 (163)
+.+...
T Consensus 168 l~~~~~ 173 (193)
T 2ged_A 168 LFTARP 173 (193)
T ss_dssp STTCCC
T ss_pred hcCCCC
Confidence 976443
No 166
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.36 E-value=2e-12 Score=98.43 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=74.2
Q ss_pred eeeEeeecccchh---------hhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 6 ESFFWSLLQAGQE---------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 6 ~~~l~d~Dt~G~e---------~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
.+.+|| |||.+ .+......+++.+|++++|+|+++ +.....++..... ..+.|+++++||+|+.
T Consensus 57 ~i~~iD--TpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 57 QAIYVD--TPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNV 129 (301)
T ss_dssp EEEEES--SSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTC
T ss_pred eEEEEE--CcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccC
Confidence 445555 99987 344456778899999999999976 3233333333222 1358999999999986
Q ss_pred CCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 77 HRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 77 ~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
..+....+....+...+++ .++++||+++.|++++++.+...+
T Consensus 130 ~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp CCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 5222223444556555676 599999999999999999987643
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.34 E-value=5.8e-14 Score=113.51 Aligned_cols=106 Identities=18% Similarity=0.233 Sum_probs=75.7
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC-
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR- 78 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~- 78 (163)
.+..+.||| |||+++|..++..++..+|++|+|+|+++ +++++.+ ..+.. .++|+++++||+|+.+.
T Consensus 49 ~~~~i~~iD--TPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~ 119 (501)
T 1zo1_I 49 ENGMITFLD--TPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEAD 119 (501)
T ss_dssp TSSCCCEEC--CCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTC
T ss_pred CCEEEEEEE--CCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccC
Confidence 345677887 99999999999999999999999999988 3444332 23332 35899999999998642
Q ss_pred -CccCHH--HHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHH
Q 031249 79 -RAVSKE--EGEQFAKENG--LLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 79 -~~v~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
..+..+ +...+...++ ++++++||+++.|++++|+++..
T Consensus 120 ~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 120 PDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 111100 0001112233 68999999999999999999864
No 168
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.34 E-value=2.4e-12 Score=111.95 Aligned_cols=107 Identities=17% Similarity=0.128 Sum_probs=77.3
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCcc--
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV-- 81 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v-- 81 (163)
..+.||| |||+++|...+..+++.+|++|+|+|+++.... ...+++..+... ++| +|+++||+|+.+..+.
T Consensus 359 ~kI~IID--TPGHedF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le 432 (1289)
T 3avx_A 359 RHYAHVD--CPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLE 432 (1289)
T ss_dssp CEEEEEE--CCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHH
T ss_pred EEEEEEE--CCChHHHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHH
Confidence 4567777 999999999889999999999999999885322 233445555443 377 7899999999652221
Q ss_pred -CHHHHHHHHHHcC-----CeEEEEcCCCC--------CCHHHHHHHHHH
Q 031249 82 -SKEEGEQFAKENG-----LLFLEASARTA--------QNVEEAFIKTAA 117 (163)
Q Consensus 82 -~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~~i~~lf~~l~~ 117 (163)
..+++..++...+ ++++++||+++ .||.++|+.|..
T Consensus 433 ~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 433 LVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp HHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 1245666777766 57999999999 346666666654
No 169
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.32 E-value=9.8e-13 Score=108.86 Aligned_cols=107 Identities=14% Similarity=0.077 Sum_probs=71.3
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH---HHHHHHHHHHHHHHhcCCC-CeEEEEeeCCCCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLSSWLEDARQHANPN-MSIMLVGNKCDLAHRR 79 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~-~p~ilv~nK~D~~~~~ 79 (163)
+..+.||| |||+++|...+..+++.+|++|+|+|+++.. +|....++...+......+ .|+|||+||+|+.+..
T Consensus 244 ~~~~~iiD--TPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 244 RANFTIVD--APGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp SCEEEEEE--CCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTC
T ss_pred CceEEEEE--CCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchh
Confidence 34677777 9999999999999999999999999998742 1111112222221111123 4699999999986532
Q ss_pred ccC----HHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHH
Q 031249 80 AVS----KEEGEQFAKENG-----LLFLEASARTAQNVEEAF 112 (163)
Q Consensus 80 ~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~lf 112 (163)
+.. ..++..++...+ ++++++||++|.||.++.
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 222 223344444444 479999999999998763
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.29 E-value=1.2e-12 Score=105.01 Aligned_cols=102 Identities=19% Similarity=0.130 Sum_probs=72.0
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH---HHH---HHHHHHHHHHHhcCCCCe-EEEEeeCCCCCC
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN---HLSSWLEDARQHANPNMS-IMLVGNKCDLAH 77 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~ 77 (163)
..+.||| |||+++|...+..++..+|++|||+|+++.. +|+ ....++..+.. .++| +++++||+|+.+
T Consensus 85 ~~~~iiD--tPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 YQVTVID--APGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp EEEEEEE--CCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred ceEEEEE--CCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 4566666 9999999999999999999999999999753 332 22233333332 2354 999999999863
Q ss_pred CCc----cCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q 031249 78 RRA----VSKEEGEQFAKENG-----LLFLEASARTAQNVEEA 111 (163)
Q Consensus 78 ~~~----v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l 111 (163)
... ...+++..++...+ ++++++||+++.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 111 11234555666665 57999999999999755
No 171
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.28 E-value=3.4e-13 Score=105.19 Aligned_cols=112 Identities=14% Similarity=0.229 Sum_probs=64.1
Q ss_pred eeeEeeecccch-------hhhhhchh-------hhccCCcEE-----------EEEEECCC-hHHHHHHH-HHHHHHHH
Q 031249 6 ESFFWSLLQAGQ-------ESFRSITR-------SYYRGAAGA-----------LLVYDITR-RETFNHLS-SWLEDARQ 58 (163)
Q Consensus 6 ~~~l~d~Dt~G~-------e~~~~~~~-------~~~~~ad~~-----------i~v~d~~~-~~s~~~~~-~~~~~l~~ 58 (163)
.+.+|| |||. ++|..++. .|++.++++ +++|++++ ..++..+. .+++.+
T Consensus 96 ~l~i~D--TpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-- 171 (361)
T 2qag_A 96 RLTVVD--TPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-- 171 (361)
T ss_dssp EEEEEC----------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT--
T ss_pred ceEEEE--eccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh--
Confidence 355555 9999 88888887 777766554 36666654 44455544 344433
Q ss_pred hcCCCCeEEEEeeCCCCCCCCccCH--HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 59 HANPNMSIMLVGNKCDLAHRRAVSK--EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 59 ~~~~~~p~ilv~nK~D~~~~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
..++|+|+|+||+|+.+.+++.. +++..++...+++++++||+++.+ ++.|.++.+.+.+...
T Consensus 172 --~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 172 --HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp --CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred --ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 25689999999999976544433 456667777789999999999999 9999999988876554
No 172
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.27 E-value=3.5e-12 Score=102.22 Aligned_cols=106 Identities=12% Similarity=0.055 Sum_probs=72.9
Q ss_pred ccceeeEeeecccc--------hhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 3 FSQESFFWSLLQAG--------QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G--------~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
.+..++||| ||| ++++...+..+++.+|++|||+|..+..+.. ..++..+.+. .++|++||+||+|
T Consensus 69 ~~~~~~liD--T~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~~--~~~pvilV~NK~D 142 (456)
T 4dcu_A 69 LNYDFNLID--TGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA--DEEVAKILYR--TKKPVVLAVNKLD 142 (456)
T ss_dssp CSSCCEEEC--CCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH--HHHHHHHHTT--CCSCEEEEEECC-
T ss_pred CCceEEEEE--CCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH--HHHHHHHHHH--cCCCEEEEEECcc
Confidence 356788888 999 8889999999999999999999987643322 2333333332 4689999999999
Q ss_pred CCCCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
+.+.. .....+. ..++ .++++||+++.|+.++|+.+...+
T Consensus 143 ~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 143 NTEMR----ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp ------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred chhhh----hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhc
Confidence 85421 1111111 2233 468999999999999999997755
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.27 E-value=1.7e-12 Score=98.04 Aligned_cols=113 Identities=11% Similarity=0.006 Sum_probs=76.4
Q ss_pred ceeeEeeecccchh-------------hhhhchhhhccCCcEEE-EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249 5 QESFFWSLLQAGQE-------------SFRSITRSYYRGAAGAL-LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG 70 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e-------------~~~~~~~~~~~~ad~~i-~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~ 70 (163)
..+.||| |||.. .+..++..|++.++.+| +|+|+++..+..+...+++.+. ..+.|+++|+
T Consensus 125 ~~l~lvD--tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~~~~i~V~ 199 (299)
T 2aka_B 125 LNLTLVD--LPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVI 199 (299)
T ss_dssp CSEEEEE--CCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTCSSEEEEE
T ss_pred CCceEEe--CCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCCCeEEEEE
Confidence 5677777 99953 56678888999999777 7999987554444334444442 2468999999
Q ss_pred eCCCCCCCCccCHHHHHHHHHHc--C-CeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 71 NKCDLAHRRAVSKEEGEQFAKEN--G-LLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 71 nK~D~~~~~~v~~~~~~~~~~~~--~-~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
||+|+.+......+......... + .+++++||+++.|++++|+++.++..-.
T Consensus 200 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~ 254 (299)
T 2aka_B 200 TKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF 254 (299)
T ss_dssp ECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred EccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHH
Confidence 99998764432232222100011 2 3578899999999999999998754433
No 174
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.27 E-value=4.3e-11 Score=87.86 Aligned_cols=114 Identities=11% Similarity=0.038 Sum_probs=74.3
Q ss_pred ccceeeEeeecccc-----------hhhhhhchhhhccCCcEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCeEEEE
Q 031249 3 FSQESFFWSLLQAG-----------QESFRSITRSYYRGAAGALLVYDITRRET--FNHLSSWLEDARQHANPNMSIMLV 69 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G-----------~e~~~~~~~~~~~~ad~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~ilv 69 (163)
.+..+.||| ||| .+.+...+..+++++|++|+|+|+++... ...+..+.+.+... ...|+++|
T Consensus 76 ~~~~i~liD--TpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv 151 (239)
T 3lxx_A 76 KETELVVVD--TPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILI 151 (239)
T ss_dssp TTEEEEEEE--CCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEE
T ss_pred CCceEEEEE--CCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEE
Confidence 355778888 999 45666677778889999999999875332 22222233222221 23699999
Q ss_pred eeCCCCCCCCccC------HHHHHHHHHHcCCeEEEEcCCCC-----CCHHHHHHHHHHHHH
Q 031249 70 GNKCDLAHRRAVS------KEEGEQFAKENGLLFLEASARTA-----QNVEEAFIKTAAKIL 120 (163)
Q Consensus 70 ~nK~D~~~~~~v~------~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~lf~~l~~~~~ 120 (163)
+||+|+.+...+. .+....+++..+..++.+++..+ .+|.++|..+...+.
T Consensus 152 ~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 152 FTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp EECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 9999986644433 23567788888888888877644 577777777766553
No 175
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.26 E-value=5.7e-12 Score=93.61 Aligned_cols=114 Identities=12% Similarity=0.081 Sum_probs=72.0
Q ss_pred cceeeEeeecccchhhhhh-----------chhhhccCCcEEEEEEECCChHH-HHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249 4 SQESFFWSLLQAGQESFRS-----------ITRSYYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGN 71 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~-----------~~~~~~~~ad~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ilv~n 71 (163)
+..+.||| |||+..+.. ....+++.+|++|+|+|+++... ...+..++..+.... ...|+++++|
T Consensus 70 ~~~i~iiD--TpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~ 146 (260)
T 2xtp_A 70 NREIVIID--TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFT 146 (260)
T ss_dssp TEEEEEEE--CCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEE
T ss_pred CCEEEEEE--CcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEE
Confidence 44677777 999876533 23347789999999999986222 122223333332111 1246666666
Q ss_pred -CCCCCCCCccCH-------HHHHHHHHHcCCe---E--EEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 72 -KCDLAHRRAVSK-------EEGEQFAKENGLL---F--LEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 72 -K~D~~~~~~v~~-------~~~~~~~~~~~~~---~--~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
|+|+... .+.. .++..++...+.. + +++||+++.|++++|+++...+..
T Consensus 147 nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 147 HKEDLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp CGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 9998642 2221 2244456655533 2 788999999999999999988765
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.22 E-value=3.9e-11 Score=100.25 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=52.5
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
+..++||| |||+++|...+..+++.+|++++|+|+++..... ...++..+... ++|+++++||+|+.
T Consensus 73 ~~~~nliD--TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 73 GHRVFLLD--APGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL---GLPRMVVVTKLDKG 139 (665)
T ss_dssp TEEEEEEE--CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred CEEEEEEe--CCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc---cCCEEEEecCCchh
Confidence 34567777 9999999999999999999999999988754333 23455555443 48999999999985
No 177
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.20 E-value=7e-11 Score=92.31 Aligned_cols=96 Identities=26% Similarity=0.328 Sum_probs=74.8
Q ss_pred chhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHH----HH
Q 031249 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF----AK 91 (163)
Q Consensus 16 G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~----~~ 91 (163)
..++|..+++.+++.+|++++|+|+++.. ..|...+.+.. .++|+++|+||+|+... ....++...+ ++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence 46889999999999999999999999853 34666666554 36899999999998653 3344444444 56
Q ss_pred HcCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 031249 92 ENGL---LFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 92 ~~~~---~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
..++ +++++||+++.|++++++.+.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6677 79999999999999999988654
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.14 E-value=1.2e-11 Score=96.31 Aligned_cols=108 Identities=14% Similarity=0.089 Sum_probs=76.5
Q ss_pred ceeeEeeecccchhhh-------------hhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249 5 QESFFWSLLQAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN 71 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~-------------~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n 71 (163)
..+.||| |||..++ ..+...|++++|++|+|+|..+..... ..|+..+......+.|+++|+|
T Consensus 136 ~~l~lvD--tPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~n 211 (360)
T 3t34_A 136 VNLTLID--LPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLT 211 (360)
T ss_dssp CSEEEEE--CCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEE
T ss_pred CCeEEEE--CCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEe
Confidence 3567777 9998776 567888999999999999875533222 2344445444445689999999
Q ss_pred CCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 031249 72 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 116 (163)
Q Consensus 72 K~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~ 116 (163)
|+|+.+......+.+.......+..|++++++++.++++.+..+.
T Consensus 212 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 212 KIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp CGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred CCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 999876555544444444445567799999999888877665543
No 179
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.11 E-value=2.2e-10 Score=84.77 Aligned_cols=114 Identities=15% Similarity=0.082 Sum_probs=72.2
Q ss_pred cceeeEeeecccch--------hhhhhchhhhc----cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEE
Q 031249 4 SQESFFWSLLQAGQ--------ESFRSITRSYY----RGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIML 68 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~--------e~~~~~~~~~~----~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~il 68 (163)
+..+.||| |||. +++...+..++ +++|++|+|+|+++.... ...+++.+.+... .+.|++|
T Consensus 69 ~~~i~liD--TPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~--~~~~~~~l~~~~~~~~~~~~iil 144 (247)
T 3lxw_A 69 KCHVEVVD--TPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ--DQQAVRQVRDMFGEDVLKWMVIV 144 (247)
T ss_dssp TEEEEEEE--CCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH--HHHHHHHHHHHHCGGGGGGEEEE
T ss_pred CcEEEEEE--CCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH--HHHHHHHHHHHhChhhhccEEEE
Confidence 45677777 9996 44433333333 999999999999853211 1223333433221 2589999
Q ss_pred EeeCCCCCCCCcc------CHHHHHHHHHHcCCeEEEEcCCC-----CCCHHHHHHHHHHHHHH
Q 031249 69 VGNKCDLAHRRAV------SKEEGEQFAKENGLLFLEASART-----AQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 69 v~nK~D~~~~~~v------~~~~~~~~~~~~~~~~~~~Sa~~-----~~~i~~lf~~l~~~~~~ 121 (163)
++||.|+.+.... ..+....+.+..+..++.+++.. +.+|.++++.+.+.+.+
T Consensus 145 v~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 145 FTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp EECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 9999998542110 01345667778888877777655 46888888888766654
No 180
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.10 E-value=2.4e-10 Score=95.89 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=54.5
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
+..+.||| |||+.+|...+..+++.+|++|+|+|+++..++.....|. .+... ++|+++++||+|+..
T Consensus 76 ~~~i~liD--TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~~---~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 76 DHRINIID--TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEKY---KVPRIAFANKMDKTG 143 (691)
T ss_dssp TEEEEEEC--CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT---TCCEEEEEECTTSTT
T ss_pred CeEEEEEE--CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHHc---CCCEEEEEECCCccc
Confidence 44566776 9999999999999999999999999999877666554444 34333 589999999999864
No 181
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.10 E-value=5.8e-10 Score=90.90 Aligned_cols=68 Identities=19% Similarity=0.137 Sum_probs=50.8
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
+..+.||| |||+++|...+..+++.+|++|+|+|+++..... ...++..+. ..++|+++++||+|+..
T Consensus 81 ~~~i~liD--TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 81 DCLVNLLD--TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp TEEEEEEC--CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred CeEEEEEE--CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence 44566777 9999999998899999999999999998753221 222333332 24689999999999864
No 182
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.09 E-value=1.7e-12 Score=107.16 Aligned_cols=101 Identities=24% Similarity=0.164 Sum_probs=57.9
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH---HH---HHHHHHHHHHHHhcCCCCe-EEEEeeCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE---TF---NHLSSWLEDARQHANPNMS-IMLVGNKCDLA 76 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~ 76 (163)
+..+.||| |||+++|...+..+++.+|++|||+|+++.. .+ .....++..+... ++| +|||+||+|+.
T Consensus 254 ~~~i~iiD--TPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~ 328 (592)
T 3mca_A 254 KKIYEIGD--APGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLM 328 (592)
T ss_dssp -----CCE--EESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGG
T ss_pred CeEEEEEE--CCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccc
Confidence 34566666 9999999999999999999999999998532 11 1111222233332 355 99999999986
Q ss_pred CCCccC----HHHHHHHH-HHcCC-----eEEEEcCCCCCCHH
Q 031249 77 HRRAVS----KEEGEQFA-KENGL-----LFLEASARTAQNVE 109 (163)
Q Consensus 77 ~~~~v~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~ 109 (163)
+..... ..++..++ ...++ +++++||++|.||.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 421111 12333344 44455 69999999999998
No 183
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.08 E-value=5.3e-10 Score=88.59 Aligned_cols=114 Identities=15% Similarity=0.076 Sum_probs=82.1
Q ss_pred ceeeEeeecccchh----hhhhchhhh---ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCC
Q 031249 5 QESFFWSLLQAGQE----SFRSITRSY---YRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDL 75 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e----~~~~~~~~~---~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~D~ 75 (163)
..+.+|| |+|.. .+..+...+ +..++.+++++|++ ...+..+..+.+++..... ...|.+|++||.|+
T Consensus 205 ~~~~l~D--tpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl 281 (416)
T 1udx_A 205 ERFTLAD--IPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDL 281 (416)
T ss_dssp CEEEEEE--CCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTT
T ss_pred ceEEEEe--ccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCCh
Confidence 4567777 89963 233333333 45799999999998 5667777777777765431 24799999999998
Q ss_pred CCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 76 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 76 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
... ...++....+...+.+++++||+++.|+++++++|.+.+.+..
T Consensus 282 ~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 282 LEE--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp SCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred hhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence 543 2234444555556788999999999999999999998886543
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.07 E-value=1.3e-10 Score=97.43 Aligned_cols=112 Identities=10% Similarity=0.089 Sum_probs=78.4
Q ss_pred ceeeEeeecccchhhh---hhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc
Q 031249 5 QESFFWSLLQAGQESF---RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~---~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v 81 (163)
..+.||| |||.... ...+..+++++|++|||+|+++..+..+...|...+.. .+.|+++|+||+|+.....+
T Consensus 174 ~~l~LiD--TPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~ 248 (695)
T 2j69_A 174 KGIEIVD--SPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLI 248 (695)
T ss_dssp TTEEEEE--CCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCS
T ss_pred CCeEEEE--CCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECccccccccc
Confidence 3577777 9997663 34667899999999999999988777776555544432 35789999999998653312
Q ss_pred CHH----------HHHH-----HHHH--------cCCeEEEEcCC--------------CCCCHHHHHHHHHHHHHH
Q 031249 82 SKE----------EGEQ-----FAKE--------NGLLFLEASAR--------------TAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 82 ~~~----------~~~~-----~~~~--------~~~~~~~~Sa~--------------~~~~i~~lf~~l~~~~~~ 121 (163)
..+ .... +... ...+++++||+ ++.|+++++..+.+.+..
T Consensus 249 ~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 249 DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 111 1111 1111 12358999999 999999999999887654
No 185
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.07 E-value=3.4e-11 Score=90.36 Aligned_cols=84 Identities=10% Similarity=0.054 Sum_probs=46.3
Q ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--HHHHHHHHHHcCCeEEEEcCCCCCCH
Q 031249 31 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKENGLLFLEASARTAQNV 108 (163)
Q Consensus 31 ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (163)
+|+++++++.+.......-..+++.+.. .+|+++|+||+|+....++. .+.+...+...+++++++|+.++.++
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~ 191 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEE 191 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC--------
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhH
Confidence 7899999976652211122234454433 58999999999985432221 12344555667899999999999999
Q ss_pred HHHHHHHHHH
Q 031249 109 EEAFIKTAAK 118 (163)
Q Consensus 109 ~~lf~~l~~~ 118 (163)
++++++|...
T Consensus 192 ~~l~~~l~~~ 201 (274)
T 3t5d_A 192 NKLVKKIKDR 201 (274)
T ss_dssp ---CHHHHHT
T ss_pred HHHHHHHhcC
Confidence 9998887653
No 186
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.05 E-value=3.1e-10 Score=88.67 Aligned_cols=97 Identities=24% Similarity=0.234 Sum_probs=72.7
Q ss_pred cchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHH----H
Q 031249 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF----A 90 (163)
Q Consensus 15 ~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~----~ 90 (163)
..+++|..++..+++.++++++|+|+.+..+ .|...+.+.. .+.|+++|+||+|+... ....+....+ +
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPR-SVKYPKLLRWMRRMA 128 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHH
Confidence 3588999999999999999999999998763 3444444443 36899999999998653 3334444444 4
Q ss_pred HHcCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 031249 91 KENGL---LFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 91 ~~~~~---~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
+..++ +++.+||+++.|++++++.+.+.
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 55676 68999999999999999988654
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.03 E-value=1.5e-09 Score=91.13 Aligned_cols=67 Identities=16% Similarity=0.101 Sum_probs=51.9
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
..+.||| |||+.+|...+..+++.+|++|+|+|+++........ ++..+.. .++|+++++||+|+..
T Consensus 82 ~~i~liD--TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 82 HRINIID--TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred eeEEEEe--CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHHH---cCCCEEEEEeCCCccc
Confidence 4556666 9999999999999999999999999999875544433 3333333 3589999999999854
No 188
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.03 E-value=3.1e-10 Score=86.33 Aligned_cols=111 Identities=11% Similarity=0.072 Sum_probs=68.2
Q ss_pred ceeeEeeecccchhh-------------hhhchhhhccCCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249 5 QESFFWSLLQAGQES-------------FRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVG 70 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~-------------~~~~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~ 70 (163)
..+.||| |||..+ +..++..+++++|++|+|+|..+.. .......++..+. ..+.|+++|+
T Consensus 131 ~~~~lvD--TpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---~~~~~~i~v~ 205 (315)
T 1jwy_B 131 VNLTLVD--LPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVI 205 (315)
T ss_dssp CSEEEEE--CCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEE
T ss_pred CCcEEEE--CCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---CCCCcEEEEE
Confidence 3566777 999643 5667888999999999999974322 1111112333332 2468999999
Q ss_pred eCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCC------CCCHHHHHHHHHHHHH
Q 031249 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASART------AQNVEEAFIKTAAKIL 120 (163)
Q Consensus 71 nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~lf~~l~~~~~ 120 (163)
||+|+.+......+.+.......+..++++++.. +.|+.+++..+...+.
T Consensus 206 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 206 TKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp ECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred cCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 9999876443222222211111225577776654 6788888887766654
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.01 E-value=1.6e-09 Score=90.89 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=54.1
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
+..+.||| |||+.+|...+..+++.+|++|+|+|+++..++.....| ..+... ++|+++|+||+|+..
T Consensus 74 ~~~i~liD--TPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~~---~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 74 GHRVNIID--TPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATTY---GVPRIVFVNKMDKLG 141 (693)
T ss_dssp TEEEEEEC--CCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHHT---TCCEEEEEECTTSTT
T ss_pred CeeEEEEE--CcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHHc---CCCEEEEEECCCccc
Confidence 44566776 999999999999999999999999999987666654444 344443 489999999999864
No 190
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.97 E-value=1.6e-09 Score=80.14 Aligned_cols=108 Identities=13% Similarity=0.033 Sum_probs=66.4
Q ss_pred eeeEeeecccchhhhhhchh------hhccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 6 ESFFWSLLQAGQESFRSITR------SYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~------~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
.+.||| |||+..+..+.. ..+.+ +++++++|.... ..+.....+....... .+.|+++|+||+|+.
T Consensus 110 d~iiiD--tpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 110 DYVLID--TPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLL 184 (262)
T ss_dssp SEEEEE--CCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGC
T ss_pred CEEEEe--CCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEeccccc
Confidence 456666 999877654322 24566 888999887543 2332222211111111 248999999999985
Q ss_pred CCCccCHHHHHHH----------------------------HHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 77 HRRAVSKEEGEQF----------------------------AKENG--LLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 77 ~~~~v~~~~~~~~----------------------------~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
...++ +++..+ +..++ .+++++||+++.|++++++++.+.+.
T Consensus 185 ~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 185 SEEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp CHHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 43211 111111 23333 47999999999999999999987664
No 191
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.96 E-value=2.4e-09 Score=76.44 Aligned_cols=109 Identities=14% Similarity=0.075 Sum_probs=72.4
Q ss_pred eeeEeeecccchh----------hhhhchhhhc---cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249 6 ESFFWSLLQAGQE----------SFRSITRSYY---RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 72 (163)
Q Consensus 6 ~~~l~d~Dt~G~e----------~~~~~~~~~~---~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK 72 (163)
.+.+|| |||.. ++......++ +.++++++++|+++..++.+. .....+.. .+.|+++++||
T Consensus 73 ~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~---~~~~~~~v~nK 146 (210)
T 1pui_A 73 GKRLVD--LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD---SNIAVLVLLTK 146 (210)
T ss_dssp TEEEEE--CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH---TTCCEEEEEEC
T ss_pred CEEEEE--CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH---cCCCeEEEEec
Confidence 467777 99973 3444444555 578999999999886544321 11222222 35899999999
Q ss_pred CCCCCCCc--cCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 73 CDLAHRRA--VSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 73 ~D~~~~~~--v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+|+....+ .....+..++...+ +.++++||+++.+++++++.|.+.+.
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 99854221 11244555555554 45889999999999999999877653
No 192
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.95 E-value=1.2e-09 Score=81.34 Aligned_cols=79 Identities=11% Similarity=0.007 Sum_probs=55.3
Q ss_pred ccceeeEeeecccchhhhhhchhhhcc---------CCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCC--CeEEEEe
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYR---------GAAGALLVYDITRRETFNHL-SSWLEDARQHANPN--MSIMLVG 70 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~---------~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~--~p~ilv~ 70 (163)
.+..+.||| |||+++|..+...+++ ++|++|||++++... +... ..|++.+....... .|+++|+
T Consensus 82 ~~~~l~liD--TpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 158 (262)
T 3def_A 82 GGFTINIID--TPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVL 158 (262)
T ss_dssp TTEEEEEEE--CCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred CCeeEEEEE--CCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEE
Confidence 345677888 9999888776655554 889999999987654 4333 45777776654322 4999999
Q ss_pred eCCCCCCCCccCHH
Q 031249 71 NKCDLAHRRAVSKE 84 (163)
Q Consensus 71 nK~D~~~~~~v~~~ 84 (163)
||+|+...+....+
T Consensus 159 nK~Dl~~~~~~~~e 172 (262)
T 3def_A 159 THAQFSPPDELSYE 172 (262)
T ss_dssp ECTTCCCSTTCCHH
T ss_pred eCcccCCCCCccHH
Confidence 99998654444433
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.94 E-value=1.3e-09 Score=78.68 Aligned_cols=105 Identities=15% Similarity=0.071 Sum_probs=67.8
Q ss_pred ceeeEeeecccchhhhhhchhhh-ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249 5 QESFFWSLLQAGQESFRSITRSY-YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~-~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
..+.||| |+|+-. .+.+ ...++.+++|+|++..... ...+.. .. +.|+++|+||+|+.+......
T Consensus 109 ~d~iiid--t~G~~~----~~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~---~~---~~~~iiv~NK~Dl~~~~~~~~ 174 (221)
T 2wsm_A 109 CDLLLIE--NVGNLI----CPVDFDLGENYRVVMVSVTEGDDV--VEKHPE---IF---RVADLIVINKVALAEAVGADV 174 (221)
T ss_dssp CSEEEEE--EEEBSS----GGGGCCCSCSEEEEEEEGGGCTTH--HHHCHH---HH---HTCSEEEEECGGGHHHHTCCH
T ss_pred CCEEEEe--CCCCCC----CCchhccccCcEEEEEeCCCcchh--hhhhhh---hh---hcCCEEEEecccCCcchhhHH
Confidence 3456666 888511 1111 2367899999998765321 111111 11 268999999999854323456
Q ss_pred HHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 84 EEGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 84 ~~~~~~~~~~--~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
+++...+... +.+++++||+++.|++++|++|.+.+....
T Consensus 175 ~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 175 EKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 6666666554 467999999999999999999988775543
No 194
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.92 E-value=3.5e-09 Score=79.88 Aligned_cols=95 Identities=14% Similarity=0.101 Sum_probs=69.9
Q ss_pred cchh-hhhhchhhhccCCcEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHH---
Q 031249 15 AGQE-SFRSITRSYYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ--- 88 (163)
Q Consensus 15 ~G~e-~~~~~~~~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~--- 88 (163)
||+. +....+...++.+|++++|+|+.++.+.. .+..++ .++|+++|+||+|+.+ .+....
T Consensus 7 PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~-----~~~~~~~~~ 73 (282)
T 1puj_A 7 PGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKAD-----AAVTQQWKE 73 (282)
T ss_dssp --CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSC-----HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCC-----HHHHHHHHH
Confidence 8875 45566777899999999999999987764 233332 3589999999999954 223333
Q ss_pred HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 89 FAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 89 ~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
+.+..+++++++||.++.|+.+++..+.+.+...
T Consensus 74 ~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 74 HFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 3344578899999999999999999887766544
No 195
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.89 E-value=1.7e-10 Score=87.78 Aligned_cols=109 Identities=12% Similarity=0.121 Sum_probs=61.0
Q ss_pred eeeEeeecccch-------hhhhhchh-------hhccCC-------------cEEEEEEECCChHHHHHHHHHHHHHHH
Q 031249 6 ESFFWSLLQAGQ-------ESFRSITR-------SYYRGA-------------AGALLVYDITRRETFNHLSSWLEDARQ 58 (163)
Q Consensus 6 ~~~l~d~Dt~G~-------e~~~~~~~-------~~~~~a-------------d~~i~v~d~~~~~s~~~~~~~~~~l~~ 58 (163)
.+.+|| |+|. +++..++. .+++.. ++++|+.+.+.. ++..+. ++.+.+
T Consensus 77 ~ltv~D--t~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~ 151 (301)
T 2qnr_A 77 RLTVVD--TPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKA 151 (301)
T ss_dssp EEEEEE--EC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHH
T ss_pred Ccchhh--hhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHH
Confidence 455666 9998 66766665 555543 335555554321 222222 122332
Q ss_pred hcCCCCeEEEEeeCCCCCCCCcc--CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 59 HANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 59 ~~~~~~p~ilv~nK~D~~~~~~v--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
.. ...|+++|+||+|+.+.+++ ..+++..+++.++++++++||+++ +++++|.++.+.+.+
T Consensus 152 l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 152 IH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HT-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 22 35799999999998654333 235677888899999999999999 999999999988754
No 196
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.88 E-value=6.3e-10 Score=86.43 Aligned_cols=106 Identities=11% Similarity=0.034 Sum_probs=68.6
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC-
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS- 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~- 82 (163)
+..+.||| |||... .....+..+|++|+|+|....+.+..+.. .+ ...|+++|+||+|+.+.....
T Consensus 171 ~~~~iiiD--TpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---~~-----~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 171 GFDVILIE--TVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---GV-----LELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TCCEEEEE--ECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---TS-----GGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCEEEEe--CCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---hH-----hhcCCEEEEECCCCcChhHHHH
Confidence 44566776 999432 22344689999999999876544332211 01 236899999999985421111
Q ss_pred -HHHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 83 -KEEGEQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 83 -~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
..+....... ++.+++++||+++.|++++++++.+.+...
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL 285 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 1112222111 256799999999999999999998887653
No 197
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.75 E-value=4.5e-09 Score=82.85 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=32.0
Q ss_pred CCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 031249 63 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 113 (163)
Q Consensus 63 ~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~ 113 (163)
.+|+++++||.|+.. ....+.........+.+++++||+.+.++.++++
T Consensus 214 ~kP~i~v~NK~D~~~--~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAAS--DEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSC--HHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccc--hHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 389999999999752 1111222222222367899999999888876543
No 198
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.75 E-value=1.6e-08 Score=75.52 Aligned_cols=78 Identities=8% Similarity=0.003 Sum_probs=51.6
Q ss_pred cceeeEeeecccchhhhhhchh-------hh--ccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCC--CeEEEEee
Q 031249 4 SQESFFWSLLQAGQESFRSITR-------SY--YRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPN--MSIMLVGN 71 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~-------~~--~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~--~p~ilv~n 71 (163)
+..+.||| |||.+++..+.. .+ .+.+|++|||+|++.. ++... ..|++.+......+ .|+++|+|
T Consensus 86 ~~~l~iiD--TpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~n 162 (270)
T 1h65_A 86 GFTLNIID--TPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALT 162 (270)
T ss_dssp TEEEEEEE--CCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred CeEEEEEE--CCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEE
Confidence 34577777 999877654322 22 3479999999998763 34332 36777776654322 69999999
Q ss_pred CCCCCCCCccCHH
Q 031249 72 KCDLAHRRAVSKE 84 (163)
Q Consensus 72 K~D~~~~~~v~~~ 84 (163)
|+|+........+
T Consensus 163 K~Dl~~~~~~~~~ 175 (270)
T 1h65_A 163 HAQFSPPDGLPYD 175 (270)
T ss_dssp CCSCCCGGGCCHH
T ss_pred CcccCCcCCCCHH
Confidence 9998654443433
No 199
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.73 E-value=6.2e-08 Score=79.30 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=51.3
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
+..+.| +||||+-.|..-....++-+|++|+|+|+...-.-+. ...++...++ ++|+++++||+|...
T Consensus 99 ~~~iNl--IDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~~---~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 99 DRVVNL--LDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRMR---ATPVMTFVNKMDREA 166 (548)
T ss_dssp TEEEEE--ECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHHT---TCCEEEEEECTTSCC
T ss_pred CEEEEE--EeCCCcHHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHHh---CCceEEEEecccchh
Confidence 444455 4599999999999999999999999999987543332 2334555554 489999999999753
No 200
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.69 E-value=3.6e-08 Score=76.17 Aligned_cols=104 Identities=12% Similarity=-0.000 Sum_probs=64.1
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
+..+.||| |||...+.. ...+.+|++++|+|++....+..+.. ... +.|.++|+||+|+........
T Consensus 148 ~~~i~liD--TpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~~-----~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 148 GYDVVIVE--TVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GLM-----EVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TCSEEEEE--EECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HHH-----HHCSEEEECCCCTTCHHHHHH
T ss_pred CCCEEEEe--CCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hhh-----cccCEEEEECCCCCChHHHHH
Confidence 44667777 999655432 24689999999999876543221111 111 257899999999854211110
Q ss_pred --HHHHHHHHHc-------CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 84 --EEGEQFAKEN-------GLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 84 --~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
++........ ..+++++||+++.|+++++++|.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1222222222 346899999999999999999988765
No 201
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.69 E-value=3.8e-09 Score=81.92 Aligned_cols=109 Identities=12% Similarity=0.066 Sum_probs=66.4
Q ss_pred ceeeEeeecccch-------------hhhhhchhhhccCCcEEEE-EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249 5 QESFFWSLLQAGQ-------------ESFRSITRSYYRGAAGALL-VYDITRRETFNHLSSWLEDARQHANPNMSIMLVG 70 (163)
Q Consensus 5 ~~~~l~d~Dt~G~-------------e~~~~~~~~~~~~ad~~i~-v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~ 70 (163)
..+.||| |||. +++..++..|++.++.+|+ |.+++....-.+...+++. ....+.|+++|+
T Consensus 130 ~~l~lvD--TPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~---~~~~~~~~i~V~ 204 (353)
T 2x2e_A 130 LNLTLVD--LPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKE---VDPQGQRTIGVI 204 (353)
T ss_dssp CSEEEEE--CCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHH---HCTTCTTEEEEE
T ss_pred CCcEEEE--CCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHH---hCcCCCceEEEe
Confidence 4567777 9995 3567788888877765555 4555542221222223333 333568999999
Q ss_pred eCCCCCCCCccCHHHHHH--HHHHcC-CeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 71 NKCDLAHRRAVSKEEGEQ--FAKENG-LLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 71 nK~D~~~~~~v~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
||+|+.+........... +....+ .+++++||+++.|++++++.+..+
T Consensus 205 NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 205 TKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp ECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred ccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 999986543322221110 000112 246789999999999999999773
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.68 E-value=5.5e-09 Score=82.81 Aligned_cols=88 Identities=10% Similarity=0.094 Sum_probs=47.6
Q ss_pred hhccCCcEEEEEEECCCh-HHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH--HHHHHHHHHcCCeEEEEc
Q 031249 26 SYYRGAAGALLVYDITRR-ETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK--EEGEQFAKENGLLFLEAS 101 (163)
Q Consensus 26 ~~~~~ad~~i~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~--~~~~~~~~~~~~~~~~~S 101 (163)
.+++++++.+++|..... .++..+. .|++.+. .++|+|+|+||+|+...+++.. .++...+...+++++++|
T Consensus 132 al~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~s 207 (418)
T 2qag_C 132 RQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFP 207 (418)
T ss_dssp CCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred HhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCC
Confidence 355666665555554432 2344443 4666663 2589999999999866555543 567777888899999999
Q ss_pred CCCCCCHHHHHHHHHH
Q 031249 102 ARTAQNVEEAFIKTAA 117 (163)
Q Consensus 102 a~~~~~i~~lf~~l~~ 117 (163)
++++.++.++|..+..
T Consensus 208 a~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 208 ETDDEEENKLVKKIKD 223 (418)
T ss_dssp ----------------
T ss_pred CCCCcCHHHHHHHHHh
Confidence 9999999987776654
No 203
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.67 E-value=1.4e-08 Score=86.83 Aligned_cols=66 Identities=23% Similarity=0.163 Sum_probs=53.1
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
..++||| |||+.+|...+..+++.+|++|+|+|+++..++.....|.. +.. .++|+++++||+|+.
T Consensus 98 ~~i~liD--TPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLID--SPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG---ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEC--CCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCEEEEEEECHHHH
T ss_pred ceEEEEE--CcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH---cCCCeEEEEECCCcc
Confidence 3455555 99999999999999999999999999999877776544443 333 358999999999975
No 204
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.57 E-value=4.5e-07 Score=70.23 Aligned_cols=104 Identities=10% Similarity=0.015 Sum_probs=61.3
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
+..+.|+| |+|.... .......+|.+++|+|+........+.. .+ -..|.++|+||+|+.+.... .
T Consensus 166 ~~~~iliD--T~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~ 231 (349)
T 2www_A 166 GYDIILIE--TVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-R 231 (349)
T ss_dssp TCSEEEEE--CCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-H
T ss_pred CCCEEEEE--CCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-H
Confidence 34556666 9995321 2345679999999999986543221111 11 13578999999998431110 0
Q ss_pred HHHHHHHH----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 84 EEGEQFAK----------ENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 84 ~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
.....+.. .+..+++.+||+++.|+++++++|.+.+..
T Consensus 232 ~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 232 RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 11112211 124568999999999999999999887644
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.53 E-value=1.3e-07 Score=78.70 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=51.5
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
+..+.|.| |||+..|..-....++-+|++|+|+|+...-.-+ ....++...++. +|.++++||+|...
T Consensus 66 ~~~iNlID--TPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~~~---lp~i~~INKmDr~~ 133 (638)
T 3j25_A 66 NTKVNIID--TPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRKMG---IPTIFFINKIDQNG 133 (638)
T ss_dssp SCBCCCEE--CCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHHHT---CSCEECCEECCSSS
T ss_pred CEEEEEEE--CCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHHcC---CCeEEEEecccccc
Confidence 44555555 9999999999999999999999999998753222 234455555554 88999999999753
No 206
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.46 E-value=9.6e-08 Score=71.22 Aligned_cols=92 Identities=12% Similarity=0.067 Sum_probs=61.4
Q ss_pred cchhhhh-hchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHc
Q 031249 15 AGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN 93 (163)
Q Consensus 15 ~G~e~~~-~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~ 93 (163)
||+.... ..+...++++|++|+|+|+.++.+..... +. +. ++|.++|+||+|+.+... .+....+.+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-ll-----~k~~iivlNK~DL~~~~~--~~~~~~~~~~~ 74 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-FS-----RKETIILLNKVDIADEKT--TKKWVEFFKKQ 74 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-CT-----TSEEEEEEECGGGSCHHH--HHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-hc-----CCCcEEEEECccCCCHHH--HHHHHHHHHHc
Confidence 8876543 35677889999999999999887654310 11 11 589999999999954211 12223344455
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHH
Q 031249 94 GLLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 94 ~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
++++ .+||.++.|+++++..+..
T Consensus 75 g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 75 GKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TCCE-EECCTTSCHHHHHHHHCCC
T ss_pred CCeE-EEECCCCcCHHHHHHHHHH
Confidence 7888 9999999999998877643
No 207
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.45 E-value=1e-07 Score=78.07 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=51.4
Q ss_pred eeeEeeecccchhh-----------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 6 ESFFWSLLQAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~-----------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
.+.||| |||... |..++..+++.+|++|+|+|+++.........+++.+.. .+.|+++|+||+|
T Consensus 155 ~l~lID--TPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pvilVlNK~D 229 (550)
T 2qpt_A 155 SISIID--TPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKIRVVLNKAD 229 (550)
T ss_dssp HCEEEE--CCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGEEEEEECGG
T ss_pred CEEEEE--CcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCEEEEEECCC
Confidence 466676 999764 567778889999999999999875444445566666643 3479999999999
Q ss_pred CCCC
Q 031249 75 LAHR 78 (163)
Q Consensus 75 ~~~~ 78 (163)
+...
T Consensus 230 l~~~ 233 (550)
T 2qpt_A 230 MVET 233 (550)
T ss_dssp GSCH
T ss_pred ccCH
Confidence 8653
No 208
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.37 E-value=1.1e-07 Score=80.39 Aligned_cols=105 Identities=12% Similarity=0.071 Sum_probs=67.2
Q ss_pred Eeeecccchh-------------hhhhchhhhc-cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 9 FWSLLQAGQE-------------SFRSITRSYY-RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 9 l~d~Dt~G~e-------------~~~~~~~~~~-~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
+..+||||.- .+..+...|+ ..+|++++|+|++....-.+...++..+. ..+.|+++|+||+|
T Consensus 152 L~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---~~g~pvIlVlNKiD 228 (772)
T 3zvr_A 152 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKLD 228 (772)
T ss_dssp EEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC---TTCSSEEEEEECTT
T ss_pred eEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH---hcCCCEEEEEeCcc
Confidence 4444599932 3445566666 57999999999986433333223344443 24589999999999
Q ss_pred CCCCCccCHHHHHHHHHH----cC-CeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKE----NG-LLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~----~~-~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
+.+....... ... .+. .+ .+++.+||+++.|++++++.+...
T Consensus 229 lv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 229 LMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp SSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred cCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 8764433222 111 011 12 246788999999999999988764
No 209
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.36 E-value=8.7e-06 Score=63.31 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=31.0
Q ss_pred CCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCC
Q 031249 63 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART 104 (163)
Q Consensus 63 ~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 104 (163)
.+|+++++|+.|..-........+..++...+.+++++||+.
T Consensus 199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 489999999998642122335667778888889999999753
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.30 E-value=3.9e-06 Score=70.66 Aligned_cols=67 Identities=16% Similarity=0.076 Sum_probs=51.5
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
.+.|..+||||+-.|..-....++-+|++|+|+|+...-..+ ....+++..++. +|.++++||+|..
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~q-T~~v~~~a~~~~---lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQ-SETVWRQANKYG---VPRIVYVNKMDRQ 150 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHHT---CCEEEEEECSSST
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchh-HHHHHHHHHHcC---CCeEEEEcccccc
Confidence 355556669999999999999999999999999998753333 233445555544 8999999999974
No 211
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.29 E-value=1.1e-06 Score=68.53 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=38.1
Q ss_pred CCeEEEEeeCCCC--CCC-CccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 031249 63 NMSIMLVGNKCDL--AHR-RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 114 (163)
Q Consensus 63 ~~p~ilv~nK~D~--~~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~ 114 (163)
.+|+++++||.|. .+. +....+.+..+++..+.+++++||+...++.+++..
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~ 255 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGE 255 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchH
Confidence 3799999999974 221 123456777888888899999999987766666554
No 212
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.28 E-value=1.9e-07 Score=71.18 Aligned_cols=93 Identities=13% Similarity=0.133 Sum_probs=62.0
Q ss_pred hhhhhchhhhccCCcEEEEEEECCChHH-HHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc--CHHHHHHHHHHcC
Q 031249 18 ESFRSITRSYYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKENG 94 (163)
Q Consensus 18 e~~~~~~~~~~~~ad~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v--~~~~~~~~~~~~~ 94 (163)
+|...+.+..+.++|.+++|+|+.++.. ...+..++..... .++|.+||+||+|+.++... ..+.........|
T Consensus 74 ~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g 150 (307)
T 1t9h_A 74 ERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG 150 (307)
T ss_dssp CCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC
Confidence 4555577778999999999999986543 3444444444333 45899999999999653210 0123333444568
Q ss_pred CeEEEEcCCCCCCHHHHHH
Q 031249 95 LLFLEASARTAQNVEEAFI 113 (163)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~ 113 (163)
++++.+||.++.|+++++.
T Consensus 151 ~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 151 YDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp CCEEECCHHHHTTCTTTGG
T ss_pred CeEEEEecCCCCCHHHHHh
Confidence 8999999988877665443
No 213
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.25 E-value=8.8e-07 Score=63.80 Aligned_cols=58 Identities=19% Similarity=0.119 Sum_probs=46.6
Q ss_pred CeEEEEeeCCCCCCCCccCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 64 ~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
.|.++|+||+|+.+...+..+++..++... +.+++++||+++.|++++|+++.+.+..
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 678999999998653335667777777654 5689999999999999999999887643
No 214
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.20 E-value=3.5e-06 Score=64.94 Aligned_cols=104 Identities=7% Similarity=0.021 Sum_probs=60.9
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
+.++.|+| |+|..+-. ......+|.+++|+|....+..+.+.. .+.. .|.++++||.|+........
T Consensus 147 ~~~~iliD--T~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~---~i~~-----~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 147 GFDVILVE--TVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK---GIFE-----LADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp TCCEEEEE--ECSSSSCH---HHHHTTSSEEEEEECSCC------CCT---THHH-----HCSEEEEECCSTTCCHHHHH
T ss_pred CCCEEEEE--CCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH---HHhc-----cccEEEEEchhccCchhHHH
Confidence 44556666 99964321 234578999999999865432211111 1111 35577789999743222111
Q ss_pred HHHHHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 84 EEGEQFAKE----------NGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 84 ~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
.....+... +..+++.+||+++.|++++++.|.+...
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 122222221 1356899999999999999999987654
No 215
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.12 E-value=8.1e-06 Score=63.39 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=56.7
Q ss_pred hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHH---HHHcCCeEEEEcCC
Q 031249 27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF---AKENGLLFLEASAR 103 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~---~~~~~~~~~~~Sa~ 103 (163)
.+.++|.+++|.+..-..+...+..++...... ++|.+||+||+|+.++.. .+....+ ....|++++.+|+.
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSSH 201 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBTT
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEecC
Confidence 368999999998765333445555555554443 478899999999965321 1113333 33568899999999
Q ss_pred CCCCHHHHHHH
Q 031249 104 TAQNVEEAFIK 114 (163)
Q Consensus 104 ~~~~i~~lf~~ 114 (163)
++.|++++...
T Consensus 202 ~~~gl~~L~~~ 212 (358)
T 2rcn_A 202 TQDGLKPLEEA 212 (358)
T ss_dssp TTBTHHHHHHH
T ss_pred CCcCHHHHHHh
Confidence 99999887764
No 216
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0027 Score=49.52 Aligned_cols=90 Identities=8% Similarity=-0.029 Sum_probs=55.7
Q ss_pred ccceeeEeeecccchhhhh----hc---hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEeeCC
Q 031249 3 FSQESFFWSLLQAGQESFR----SI---TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKC 73 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~----~~---~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~ 73 (163)
.+.+++|.| |||.-+-. .+ .-..++.+|++++|+|+.++. .+...+..++..... ...|.+++.||.
T Consensus 117 ~~~~i~l~D--~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~ 192 (376)
T 4a9a_A 117 KGAKIQMLD--LPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKK 192 (376)
T ss_dssp TTEEEEEEE--CGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEEC
T ss_pred CCcEEEEEe--CCCccCCchhhhHHHHHHHHHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHh
Confidence 456677776 99953211 12 223568999999999999863 333333344433221 357888999999
Q ss_pred CCCC--------CCccCHHHHHHHHHHcCCe
Q 031249 74 DLAH--------RRAVSKEEGEQFAKENGLL 96 (163)
Q Consensus 74 D~~~--------~~~v~~~~~~~~~~~~~~~ 96 (163)
|... ......++...+...+.+.
T Consensus 193 d~~gi~i~~~~~~~~l~~eeik~il~~~~lt 223 (376)
T 4a9a_A 193 EKGGISITNTVPLTHLGNDEIRAVMSEYRIN 223 (376)
T ss_dssp SSSCEEEEESSCCSSCCHHHHHHHHHHTTCC
T ss_pred hhhhhhhhcchhhhhccHHHHHHHHHHhccc
Confidence 9632 1235567777777777654
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.91 E-value=0.0011 Score=53.58 Aligned_cols=101 Identities=10% Similarity=0.015 Sum_probs=59.7
Q ss_pred ceeeEeeecccchhhhh-hchhh---h--ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeE-EEEeeCCCCCC
Q 031249 5 QESFFWSLLQAGQESFR-SITRS---Y--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAH 77 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~-~~~~~---~--~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ilv~nK~D~~~ 77 (163)
..+.|+| |||..... .++.. . +..+|.++||+|+..... .......+.+. .|+ ++|+||.|...
T Consensus 184 ~DvvIID--TpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~~----~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 184 FEIIIVD--TSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKDK----VDVASVIVTKLDGHA 254 (504)
T ss_dssp CCEEEEE--ECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHHH----HCCCCEEEECTTSCC
T ss_pred CcEEEEe--CCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHhh----cCceEEEEeCCcccc
Confidence 3455665 99965321 11111 1 237899999999977543 12223334332 465 88999999754
Q ss_pred CCccCHHHHHHHHHHcCCeE------------------EEEcCCCCCC-HHHHHHHHHHH
Q 031249 78 RRAVSKEEGEQFAKENGLLF------------------LEASARTAQN-VEEAFIKTAAK 118 (163)
Q Consensus 78 ~~~v~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~lf~~l~~~ 118 (163)
... .+..+....+.++ ..+|+..|.| +.++++++.+.
T Consensus 255 ~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 KGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred chH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 221 1223344555543 3358888888 98888888655
No 218
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.06 E-value=0.0034 Score=49.26 Aligned_cols=38 Identities=11% Similarity=-0.116 Sum_probs=22.8
Q ss_pred eeeEeeecccchhhhhh-------chhhhccCCcEEEEEEECCChHH
Q 031249 6 ESFFWSLLQAGQESFRS-------ITRSYYRGAAGALLVYDITRRET 45 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~-------~~~~~~~~ad~~i~v~d~~~~~s 45 (163)
.++||| |||..++.+ .+..+++++|++++|+|+.+..+
T Consensus 87 ~i~lvD--tpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 87 FLNVVD--IAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp EEEEEE--CCC-----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred ccEEEE--CCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 467777 999887654 45678899999999999976433
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.68 E-value=0.1 Score=40.82 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=29.3
Q ss_pred CCeEEEEeeCCCCC-C-CCccCHHHHHHHHHHcC--CeEEEEcCCC
Q 031249 63 NMSIMLVGNKCDLA-H-RRAVSKEEGEQFAKENG--LLFLEASART 104 (163)
Q Consensus 63 ~~p~ilv~nK~D~~-~-~~~v~~~~~~~~~~~~~--~~~~~~Sa~~ 104 (163)
.+|+++++|+.|.. . ...-..+.+..++...+ .+++.+||..
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 48999999998831 0 11223566777777665 7899999875
No 220
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.37 E-value=0.027 Score=39.27 Aligned_cols=81 Identities=7% Similarity=-0.085 Sum_probs=50.9
Q ss_pred eeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc--CCCCeEEEEeeCCCCCCCCccCHHHHH
Q 031249 10 WSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRRAVSKEEGE 87 (163)
Q Consensus 10 ~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ilv~nK~D~~~~~~v~~~~~~ 87 (163)
..+|||+.. .......+..+|.+|++...+... ..+..+++.+.+.. .+..++.+|.|+.+... . ...+..
T Consensus 79 viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~-~~~~~~ 151 (206)
T 4dzz_A 79 AIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--T-MLNVLK 151 (206)
T ss_dssp EEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--E-EEHHHH
T ss_pred EEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--h-HHHHHH
Confidence 334488754 334456677799999999876543 55666666665443 24567899999998532 1 224455
Q ss_pred HHHHHcCCeE
Q 031249 88 QFAKENGLLF 97 (163)
Q Consensus 88 ~~~~~~~~~~ 97 (163)
++.+.++.++
T Consensus 152 ~~l~~~~~~v 161 (206)
T 4dzz_A 152 ESIKDTGVKA 161 (206)
T ss_dssp HHHHHHTCCB
T ss_pred HHHHHcCCce
Confidence 5566666553
No 221
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.21 E-value=0.05 Score=43.32 Aligned_cols=64 Identities=11% Similarity=-0.062 Sum_probs=41.4
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcC
Q 031249 29 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA 102 (163)
Q Consensus 29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 102 (163)
...|.++||.|+...+. .......+.+.. .+..+|+||.|.... .-.+..+....+.|+.+++.
T Consensus 211 ~~pd~vlLVvDA~~gq~---a~~~a~~f~~~~---~i~gVIlTKlD~~~~----gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 211 IHPHEVILVIDGTIGQQ---AYNQALAFKEAT---PIGSIIVTKLDGSAK----GGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp HCCSEEEEEEEGGGGGG---HHHHHHHHHHSC---TTEEEEEECCSSCSS----HHHHHHHHHTTCCCEEEEEC
T ss_pred hcCceEEEEEeCCCchh---HHHHHHHHHhhC---CCeEEEEECCCCccc----ccHHHHHHHHHCCCEEEEEc
Confidence 35799999999876532 222334444432 356789999997432 23445566678889877775
No 222
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.44 E-value=0.4 Score=34.08 Aligned_cols=84 Identities=10% Similarity=0.089 Sum_probs=55.4
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHH
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 86 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~ 86 (163)
+.|+| ||+.. .......+..+|.+|++...+ ..+...+..+++.+.+...+...+.+|.|+.+... ....+
T Consensus 121 ~viiD--~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~-- 191 (245)
T 3ea0_A 121 YIIVD--FGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSD-- 191 (245)
T ss_dssp EEEEE--EESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHH--
T ss_pred EEEEe--CCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHH--
Confidence 44445 77643 334556778899999999865 67778888888888665433456889999998532 23333
Q ss_pred HHHHHHcCCeEEEE
Q 031249 87 EQFAKENGLLFLEA 100 (163)
Q Consensus 87 ~~~~~~~~~~~~~~ 100 (163)
.+.+.++.+++..
T Consensus 192 -~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 192 -EIEKVIGRPISKR 204 (245)
T ss_dssp -HHHHHHTSCEEEE
T ss_pred -HHHHHhCCCeEEE
Confidence 3445567776654
No 223
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.27 E-value=0.12 Score=38.85 Aligned_cols=89 Identities=12% Similarity=0.025 Sum_probs=52.8
Q ss_pred Eeeecccchhh--hh-hchh-----hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCC
Q 031249 9 FWSLLQAGQES--FR-SITR-----SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRR 79 (163)
Q Consensus 9 l~d~Dt~G~e~--~~-~~~~-----~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~ 79 (163)
+..+||||... .. .+.. ..+..+|.+++|.|+.... +.....+.+.. ..| ..+|.||.|...
T Consensus 183 ~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~-- 253 (297)
T 1j8m_F 183 IIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA-- 253 (297)
T ss_dssp EEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT--
T ss_pred EEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc--
Confidence 44445999765 22 1221 1345789999999986432 22223333433 245 678899999632
Q ss_pred ccCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 031249 80 AVSKEEGEQFAKENGLLFLEASARTAQNVEE 110 (163)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (163)
....+..+....+.++..++ .|+++++
T Consensus 254 --~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 --KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp --THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred --chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 23445567778888977776 4555543
No 224
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.95 E-value=0.3 Score=34.38 Aligned_cols=81 Identities=11% Similarity=0.049 Sum_probs=51.5
Q ss_pred eeecccch-hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHH
Q 031249 10 WSLLQAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ 88 (163)
Q Consensus 10 ~d~Dt~G~-e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~ 88 (163)
..+|||+. .. ......+..+|.+|++...+ ..+...+...++.+.+.. +.++.+|.|+.+.... . ...+..+
T Consensus 71 viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~-~-~~~~~~~ 143 (209)
T 3cwq_A 71 IVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS-K-DGDEARQ 143 (209)
T ss_dssp EEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS-C-HHHHHHH
T ss_pred EEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc-h-HHHHHHH
Confidence 33447765 32 23455677899999999865 566777777777776633 3568899999986320 1 1345555
Q ss_pred HHHHcCCeE
Q 031249 89 FAKENGLLF 97 (163)
Q Consensus 89 ~~~~~~~~~ 97 (163)
..++++.++
T Consensus 144 ~l~~~g~~v 152 (209)
T 3cwq_A 144 LLTTAGLPL 152 (209)
T ss_dssp HHHHTTCCB
T ss_pred HHHHcCCch
Confidence 555566553
No 225
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.57 E-value=0.31 Score=38.63 Aligned_cols=67 Identities=10% Similarity=0.001 Sum_probs=44.1
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 108 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (163)
..|.++||.|+...+. +......+.+.. .+..+|.||.|... ..-.+..+....+.|+.+++. |+++
T Consensus 211 ~pd~vlLVlDa~~gq~---a~~~a~~f~~~~---~~~gVIlTKlD~~a----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 211 KPDDVILVIDASIGQK---AYDLASRFHQAS---PIGSVIITKMDGTA----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp CCSEEEEEEEGGGGGG---GHHHHHHHHHHC---SSEEEEEECGGGCS----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred CCcceEEEEeCccchH---HHHHHHHHhccc---CCcEEEEecccccc----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 4689999999876532 223344554443 45788999999743 234455666778999887776 5444
No 226
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.11 E-value=0.62 Score=33.64 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=38.4
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHH---HHHHHHhcCCCCeEE-EEeeCCCC
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIM-LVGNKCDL 75 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~---~~~l~~~~~~~~p~i-lv~nK~D~ 75 (163)
+..+|||+... ......+..+|.+|++...+. .++..+..+ ++.+.+...++.+++ +|.|+.+.
T Consensus 114 ~iiiD~pp~~~--~~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~ 181 (257)
T 1wcv_1 114 LVLLDAPPSLS--PLTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG 181 (257)
T ss_dssp EEEEECCSSCC--HHHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred EEEEeCCCCCC--HHHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence 34444776432 223445567999999998764 445444444 444433333456764 88999985
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.91 E-value=1.6 Score=34.44 Aligned_cols=82 Identities=11% Similarity=-0.018 Sum_probs=45.8
Q ss_pred eEeeecccchhhhh-----hchh-hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCC-e-EEEEeeCCCCCCCC
Q 031249 8 FFWSLLQAGQESFR-----SITR-SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-S-IMLVGNKCDLAHRR 79 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~-----~~~~-~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p-~ilv~nK~D~~~~~ 79 (163)
.+..+||||..... .+.. ..+..+|.++||.|+.... +.......+. ... | ..+|.||.|....
T Consensus 182 D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~----~~~~~i~gvVlnK~D~~~~- 253 (432)
T 2v3c_C 182 DVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK----EAVGEIGSIIVTKLDGSAK- 253 (432)
T ss_dssp SEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH----TTSCSCEEEEEECSSSCST-
T ss_pred CEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh----hcccCCeEEEEeCCCCccc-
Confidence 34445599964321 1111 1123689999999987653 2222223332 224 5 7899999997431
Q ss_pred ccCHHHHHHHHHHcCCeEEEE
Q 031249 80 AVSKEEGEQFAKENGLLFLEA 100 (163)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~ 100 (163)
...+..+....+.++..+
T Consensus 254 ---~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 254 ---GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ---THHHHHHHHHSSCCEEEE
T ss_pred ---hHHHHHHHHHHCCCEEEe
Confidence 123344666777776555
No 228
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.46 E-value=2.9 Score=30.83 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=51.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEE-EEeeCCCCCCCCccCH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIM-LVGNKCDLAHRRAVSK 83 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~i-lv~nK~D~~~~~~v~~ 83 (163)
.+.|.| |++.-... .....+..+|.+|+|...+ ..++..+..+++.+.... ..+.+++ +|.|+.+. +
T Consensus 158 D~ViiD--~p~~~~~~-~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~---~---- 226 (307)
T 3end_A 158 DVVIFD--VLGDVVCG-GFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA---T---- 226 (307)
T ss_dssp SEEEEE--ECCSSCCG-GGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC---C----
T ss_pred CEEEEe--CCCccchH-HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc---H----
Confidence 344455 77632211 1234568899999999754 566777777777776532 2456655 88999984 1
Q ss_pred HHHHHHHHHcCCeEEE
Q 031249 84 EEGEQFAKENGLLFLE 99 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~ 99 (163)
.....+.+.++.+++.
T Consensus 227 ~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 227 DEVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcee
Confidence 3455566677776443
No 229
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=90.48 E-value=1.6 Score=30.78 Aligned_cols=80 Identities=13% Similarity=-0.030 Sum_probs=48.9
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHH
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ 88 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~ 88 (163)
+..+|+|+... ......+..+|.+|++...+ ..+...+...++.+.+.. ..++.+|.|+.+..... ...+ .
T Consensus 114 ~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~-~~~~---~ 184 (237)
T 1g3q_A 114 FILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKAG--LAILGFVLNRYGRSDRD-IPPE---A 184 (237)
T ss_dssp EEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHTT--CEEEEEEEEEETSCTTC-CCHH---H
T ss_pred EEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhCC--CceEEEEEecCCcccch-hHHH---H
Confidence 33444776432 33455678899999999765 566777777777776542 24567889999853322 2223 3
Q ss_pred HHHHcCCeE
Q 031249 89 FAKENGLLF 97 (163)
Q Consensus 89 ~~~~~~~~~ 97 (163)
+.+.++.++
T Consensus 185 ~~~~~~~~~ 193 (237)
T 1g3q_A 185 AEDVMEVPL 193 (237)
T ss_dssp HHHHHCSCE
T ss_pred HHHHhCccc
Confidence 344456654
No 230
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=90.19 E-value=1.6 Score=31.38 Aligned_cols=80 Identities=9% Similarity=-0.092 Sum_probs=49.9
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHH
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 86 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~ 86 (163)
+.|.| +++... ......+..+|.+|+|...+ ..+...+...++.+.+.. ..++-+|.|+.+.... ....
T Consensus 113 ~viiD--~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~----~~~~ 181 (263)
T 1hyq_A 113 ILLLD--APAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG--TKVLGVVVNRITTLGI----EMAK 181 (263)
T ss_dssp EEEEE--CCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CEEEEEEEEEECTTTH----HHHH
T ss_pred EEEEe--CCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhcC--CCeeEEEEccCCcccc----cchH
Confidence 44445 776432 33445667899999998754 556777777777776652 2456688999985321 1344
Q ss_pred HHHHHHcCCeE
Q 031249 87 EQFAKENGLLF 97 (163)
Q Consensus 87 ~~~~~~~~~~~ 97 (163)
..+.+.++.++
T Consensus 182 ~~~~~~~~~~~ 192 (263)
T 1hyq_A 182 NEIEAILEAKV 192 (263)
T ss_dssp HHHHHHTTSCE
T ss_pred HHHHHHhCCCe
Confidence 55566667663
No 231
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=88.76 E-value=2 Score=32.79 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=19.3
Q ss_pred cCCeEEEEcCCC---------CCCHHHHHHHHHHHHHHHHhhccccccc
Q 031249 93 NGLLFLEASART---------AQNVEEAFIKTAAKILQNIQEGALDAVN 132 (163)
Q Consensus 93 ~~~~~~~~Sa~~---------~~~i~~lf~~l~~~~~~~~~~~~~~~~~ 132 (163)
.+.|+|.++..+ ..+..+.|..|...+.++....+.++.+
T Consensus 310 ~~~Pi~~l~~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~~~~~~~~~ 358 (361)
T 3pg5_A 310 VHAPIMELSSSDRVRGAQINQRNAYAEKINSVAANVYKALFPNELEHHH 358 (361)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHCCCC-----
T ss_pred HCCCeEECchhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhcc
Confidence 345677777644 5578899999999999999888877654
No 232
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=88.04 E-value=1.4 Score=31.86 Aligned_cols=62 Identities=6% Similarity=-0.027 Sum_probs=41.8
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
+.|+| +|+.. .......+..+|.+|++...+ ..+...+..+++.+.... .+.++.+|.|+.+
T Consensus 147 ~viiD--~pp~~--~~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~-~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 147 YIVID--TNPSL--DVTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN-LFLPIFLIITRFK 208 (267)
T ss_dssp EEEEE--ECSSC--SHHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT-CCCCEEEEEEEEC
T ss_pred EEEEE--CcCCc--cHHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh-ccCCEEEEEeccc
Confidence 44555 66533 233455666799999999875 456666767777666543 4567889999994
No 233
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=87.84 E-value=2.5 Score=31.01 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=43.1
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCC--hHHHHHHHHHHHHHHHhcCCCCeE-EEEeeCCCCCCCCccCHHH
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITR--RETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~-ilv~nK~D~~~~~~v~~~~ 85 (163)
+..+|||+.... .....+..+|.+|++...+. ......+..++..+.+...++.++ -+|.|+.|... ......
T Consensus 157 ~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~--~~~~~~ 232 (298)
T 2oze_A 157 LIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS--ATIKSN 232 (298)
T ss_dssp EEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC--HHHHHH
T ss_pred EEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc--HHHHHH
Confidence 334447764322 12334446999999997642 233333334444443333355674 48899998632 122234
Q ss_pred HHHHHHHcC
Q 031249 86 GEQFAKENG 94 (163)
Q Consensus 86 ~~~~~~~~~ 94 (163)
...+.+.++
T Consensus 233 ~~~~~~~~~ 241 (298)
T 2oze_A 233 LEELYKQHK 241 (298)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 445555554
No 234
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=86.51 E-value=1.1 Score=32.52 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=47.5
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCC-----CCcc-
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAH-----RRAV- 81 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-lv~nK~D~~~-----~~~v- 81 (163)
+..+|||+......+....+..+|.+|+|..... .+...+...++.+.+. +.+++ +|.|+.|... ...+
T Consensus 131 ~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~~~~ 206 (262)
T 2ph1_A 131 HLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEET---NTSVLGLVENMSYFVCPNCGHKSYIF 206 (262)
T ss_dssp EEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHTT---TCCEEEEEETTCCEECTTTCCEECTT
T ss_pred EEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHhC---CCCEEEEEECCCccCCcccccccccc
Confidence 4445588743211111122236899999987663 3455566666666543 36666 8899987411 1111
Q ss_pred CHHHHHHHHHHcCCeEEE
Q 031249 82 SKEEGEQFAKENGLLFLE 99 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~ 99 (163)
.......+.+.++.+++.
T Consensus 207 ~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 207 GEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp CCCCHHHHHHHTTCSEEE
T ss_pred cccHHHHHHHHcCCCeEE
Confidence 112244566677877554
No 235
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=86.45 E-value=1.2 Score=31.88 Aligned_cols=64 Identities=8% Similarity=-0.070 Sum_probs=41.8
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC------CCCeEEEEeeCCCC
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN------PNMSIMLVGNKCDL 75 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~------~~~p~ilv~nK~D~ 75 (163)
+..+|||+.. .......+..+|.+|++...+ ..+...+..+++.+..... +...+.+|.|+.+.
T Consensus 116 ~viiD~p~~~--~~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 116 FIVCDSPAGI--ETGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp EEEEECCSSS--SHHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred EEEEcCCCCC--CHHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 3344477632 234566777899999999864 5667777776666643221 22577899999884
No 236
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=86.19 E-value=2.3 Score=29.98 Aligned_cols=61 Identities=11% Similarity=-0.042 Sum_probs=40.9
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
+..+|||+.. .......+..+|.+|++...+ ..++..+..+.+.+.+.. -..+.+|.|+.+
T Consensus 134 ~viiD~pp~~--~~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~~--~~~~~~v~N~~~ 194 (254)
T 3kjh_A 134 AVVMDMGAGI--EHLTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDLG--IKKVRYVINKVR 194 (254)
T ss_dssp EEEEEECTTC--TTCCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CSCEEEEEEEEC
T ss_pred EEEEeCCCcc--cHHHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHcC--CccEEEEEeCCC
Confidence 3344477643 224566778999999999864 566777766666554443 145788899998
No 237
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=80.75 E-value=0.068 Score=41.37 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=40.0
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCC
Q 031249 29 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA 105 (163)
Q Consensus 29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 105 (163)
+..|.++|+++.....-+..+.. +......+.|+++++||.|.....+. ......+.++.+..+.+.++.+.
T Consensus 244 ~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~~~~ 315 (369)
T 3ec1_A 244 REIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSKRYA 315 (369)
T ss_dssp SCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCGGGT
T ss_pred cccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCchhh
Confidence 67899999998743211111100 11112245899999999998653332 23334455666765555555443
No 238
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=80.51 E-value=0.57 Score=37.03 Aligned_cols=65 Identities=11% Similarity=0.082 Sum_probs=32.4
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH--HHHHHHHHHcCCeEEEEcC
Q 031249 33 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK--EEGEQFAKENGLLFLEASA 102 (163)
Q Consensus 33 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~--~~~~~~~~~~~~~~~~~Sa 102 (163)
+++|+.|.....+-.++ .+++.+ ..++|+|+|.||+|.....++.. ..+..-+...|++++.+|.
T Consensus 151 ~v~fI~d~~~~l~~~Di-eilk~L----~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDL-VTMKKL----DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEEEECCCC---CHHHH-HHHHHT----CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred EEEEEeCCCCCCCHHHH-HHHHHH----hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 46666676544333331 233333 24689999999999754332211 1112222345667666664
No 239
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=80.46 E-value=14 Score=26.76 Aligned_cols=85 Identities=13% Similarity=-0.019 Sum_probs=48.0
Q ss_pred Eeeecccchhhhhhch-hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCe-EEEEeeCCCCCCCCccCHHH
Q 031249 9 FWSLLQAGQESFRSIT-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMS-IMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p-~ilv~nK~D~~~~~~v~~~~ 85 (163)
+..+||+|......+. ......+|.+|++...+ ..++..+..+++.+.+... .+.+ .-+|.|+.+.. ...+.
T Consensus 121 ~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~~~ 195 (289)
T 2afh_E 121 FVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD----REDEL 195 (289)
T ss_dssp EEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT----THHHH
T ss_pred EEEEeCCCccccchhhhhhhhhhCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch----hHHHH
Confidence 4444588743222221 22235799999998754 5667766666666654321 2455 45788998631 12344
Q ss_pred HHHHHHHcCCeEE
Q 031249 86 GEQFAKENGLLFL 98 (163)
Q Consensus 86 ~~~~~~~~~~~~~ 98 (163)
...+.+.++.+++
T Consensus 196 ~~~l~~~~g~~~l 208 (289)
T 2afh_E 196 IIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHTSCEE
T ss_pred HHHHHHHcCcccc
Confidence 4556666776644
No 240
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=80.17 E-value=2.1 Score=31.39 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=37.5
Q ss_pred eeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHH---H-------------H---HHHHHhc-CCC-CeEEE
Q 031249 10 WSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS---W-------------L---EDARQHA-NPN-MSIML 68 (163)
Q Consensus 10 ~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~---~-------------~---~~l~~~~-~~~-~p~il 68 (163)
..+|||+.. .......+..+|.+|++...+. .+...+.. + + +.+.... .+. .++.+
T Consensus 107 viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v 183 (286)
T 2xj4_A 107 ILIDTPGGD--SAITRMAHGRADLVVTPMNDSF-VDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMDWVV 183 (286)
T ss_dssp EEEECCSSC--CHHHHHHHHTCSEEEEEEESSH-HHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCEEEE
T ss_pred EEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc-cHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCccccEEE
Confidence 344477753 4445667889999999998753 23322211 1 2 3332220 245 67889
Q ss_pred EeeCCCC
Q 031249 69 VGNKCDL 75 (163)
Q Consensus 69 v~nK~D~ 75 (163)
|.|+.+.
T Consensus 184 V~N~~~~ 190 (286)
T 2xj4_A 184 LRNRLAT 190 (286)
T ss_dssp EEECCTT
T ss_pred EEeeecC
Confidence 9999985
No 241
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=78.83 E-value=19 Score=28.18 Aligned_cols=83 Identities=13% Similarity=0.086 Sum_probs=45.9
Q ss_pred cCCcEEEEEEECC--ChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC-------CCCccCHHHH----HHHH----H
Q 031249 29 RGAAGALLVYDIT--RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA-------HRRAVSKEEG----EQFA----K 91 (163)
Q Consensus 29 ~~ad~~i~v~d~~--~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~-------~~~~v~~~~~----~~~~----~ 91 (163)
.+.+.+++ ++.. ..+.. .+...+... +.|+++|.||.|+. .-......+. ..+. .
T Consensus 147 ~~~~~~~~-lS~G~~~kqrv----~la~aL~~~---~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~ 218 (413)
T 1tq4_A 147 YEYDFFII-ISATRFKKNDI----DIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR 218 (413)
T ss_dssp GGCSEEEE-EESSCCCHHHH----HHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCCccHHHH----HHHHHHHhc---CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 34466655 7765 32211 223333332 47999999998852 1111223332 2232 1
Q ss_pred HcC---CeEEEEcC--CCCCCHHHHHHHHHHHH
Q 031249 92 ENG---LLFLEASA--RTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 92 ~~~---~~~~~~Sa--~~~~~i~~lf~~l~~~~ 119 (163)
+.+ ..++.+|+ ..+.+++++.+.+.+.+
T Consensus 219 ~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 219 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred hcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 222 24788999 66667998888887665
No 242
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=78.51 E-value=2.7 Score=30.79 Aligned_cols=62 Identities=8% Similarity=0.048 Sum_probs=37.7
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCC
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDL 75 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-lv~nK~D~ 75 (163)
+..+|||+..... -.......+|++|+|..... .+...+...++.+.+. +.+++ +|.|+.|.
T Consensus 194 ~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~~---~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 194 FVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEAT---GAKLLGVVLNRMPK 256 (271)
T ss_dssp EEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHTT---TCEEEEEEEEEECC
T ss_pred EEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHhC---CCCEEEEEEeCCcC
Confidence 3444578743221 12334567899999998653 3455555666666543 35655 88999985
No 243
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=78.45 E-value=16 Score=26.06 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=50.3
Q ss_pred Eeeecccchhhhhhch-hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeE-EEEeeCCCCCCCCccCHHH
Q 031249 9 FWSLLQAGQESFRSIT-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSI-MLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~-ilv~nK~D~~~~~~v~~~~ 85 (163)
+..+||+|......+. ......+|.+|++...+ ..++..+..+++.+..... .+.++ .+|.|+.+.. ...+.
T Consensus 118 ~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~~~ 192 (269)
T 1cp2_A 118 YVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA----NEYEL 192 (269)
T ss_dssp EEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS----CCHHH
T ss_pred EEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc----hhHHH
Confidence 3444488743222221 12235799999999754 5667777777777765432 24554 6789998631 23455
Q ss_pred HHHHHHHcCCeEE
Q 031249 86 GEQFAKENGLLFL 98 (163)
Q Consensus 86 ~~~~~~~~~~~~~ 98 (163)
...+.+.++.+++
T Consensus 193 ~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 193 LDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHHHHcCCccc
Confidence 5566667777644
No 244
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=76.81 E-value=16 Score=28.80 Aligned_cols=81 Identities=12% Similarity=0.025 Sum_probs=43.8
Q ss_pred Eeeecccchhhhh-hchh-----hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCcc
Q 031249 9 FWSLLQAGQESFR-SITR-----SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV 81 (163)
Q Consensus 9 l~d~Dt~G~e~~~-~~~~-----~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v 81 (163)
+..+||||...+. .+.. ..+...|.+++|.|+..... +......+... .+ .-+|.||.|.....
T Consensus 186 ~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~~----l~i~gvVlnK~D~~~~~-- 256 (433)
T 2xxa_A 186 VLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNEA----LPLTGVVLTKVDGDARG-- 256 (433)
T ss_dssp EEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHHH----SCCCCEEEECTTSSSCC--
T ss_pred EEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhcc----CCCeEEEEecCCCCccH--
Confidence 4444599964432 1111 12447899999999875432 22233334332 34 34689999974321
Q ss_pred CHHHHHHHHHHcCCeEEEE
Q 031249 82 SKEEGEQFAKENGLLFLEA 100 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~ 100 (163)
..+..+....+.++..+
T Consensus 257 --g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 257 --GAALSIRHITGKPIKFL 273 (433)
T ss_dssp --THHHHHHHHHCCCEEEE
T ss_pred --HHHHHHHHHHCCCeEEE
Confidence 23345666667764443
No 245
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=73.64 E-value=5.6 Score=32.07 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=59.9
Q ss_pred chhhhhhc-hhhhccCCcEEEEEEEC----------------CChH----HHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 16 GQESFRSI-TRSYYRGAAGALLVYDI----------------TRRE----TFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 16 G~e~~~~~-~~~~~~~ad~~i~v~d~----------------~~~~----s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
|.|+|-.+ .+..=-.-|++++|-.+ .+.+ -+..+...++.+++ .++|++|.+|+..
T Consensus 295 GaEKF~dIKCR~~gl~P~avVlVATvRALK~hGG~~~~~l~~enl~al~~G~~NL~kHIen~~~---fGvpvVVaiN~F~ 371 (543)
T 3do6_A 295 GAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGANLKNIHEENLEALKEGFKNLRVHVENLRK---FNLPVVVALNRFS 371 (543)
T ss_dssp HHHHHHHTHHHHHTCCCSEEEEEECHHHHHHHTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHH---TTCCEEEEEECCT
T ss_pred chHhhcCccccccCCCCCEEEEEeehHHHHhcCCCChhhcCccCHHHHHHHHHHHHHHHHHHHH---cCCCeEEEEeCCC
Confidence 35666542 22222346888888743 1222 23445566666665 4599999999987
Q ss_pred CCCCCccCHHHHHHHHHHcCCeEEEEc--CCCCCCHHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGLLFLEAS--ARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~lf~~l~~~~ 119 (163)
...+ ...+.+++++.+.|..+..+. ++-|+|-.++-+.+++.+
T Consensus 372 tDT~--aEi~~v~~~~~~~G~~~~~s~~wa~GG~G~~~LA~~Vv~~~ 416 (543)
T 3do6_A 372 TDTE--KEIAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAA 416 (543)
T ss_dssp TCCH--HHHHHHHHHHHTTTCEEEEECHHHHGGGGSHHHHHHHHHHC
T ss_pred CCCH--HHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHh
Confidence 5332 224567788889998765443 456677666666665544
No 246
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=73.27 E-value=11 Score=28.20 Aligned_cols=63 Identities=19% Similarity=0.083 Sum_probs=38.1
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcC
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA 102 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 102 (163)
..|.+++|.|.+.. .+.+.. .+.+.+.. ...-+|.||.|.... .-.+..+....++|+.++..
T Consensus 222 ~p~~vllVlda~t~--~~~l~~-a~~~~~~~---~i~gvVlTk~D~~~~----gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 222 APHETLLVIDATTG--QNGLVQ-AKIFKEAV---NVTGIILTKLDGTAK----GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp CCSEEEEEEEGGGH--HHHHHH-HHHHHHHS---CCCEEEEECGGGCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred CCcEEEEEEECCCC--HHHHHH-HHHHHhcC---CCCEEEEeCCCCccc----hHHHHHHHHHHCCCEEEEeC
Confidence 47899999998733 222322 23343332 123566899996331 23366778888999777654
No 247
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=71.96 E-value=5.3 Score=31.58 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=37.9
Q ss_pred eeEeeecccchh--hhhhch--------hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249 7 SFFWSLLQAGQE--SFRSIT--------RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG 70 (163)
Q Consensus 7 ~~l~d~Dt~G~e--~~~~~~--------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~ 70 (163)
..+|| +.|.+ ++...+ ..++..+++.++|+|.++. ++.....|++.+.+.. .+++.+-
T Consensus 89 ~~ifd--~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~---~~vv~l~ 156 (469)
T 1bif_A 89 FEFFL--PDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNG---YKTFFVE 156 (469)
T ss_dssp GGGGC--TTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT---CEEEEEE
T ss_pred ccccC--CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC---CcEEEEE
Confidence 45666 78873 334443 5677778999999999987 4555666777666543 4444443
No 248
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=71.37 E-value=6.7 Score=29.65 Aligned_cols=69 Identities=9% Similarity=-0.040 Sum_probs=43.0
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 109 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (163)
..|-.+++.|..... ++......+.+.. -.-+++.||.|... ..-.+..+....+.++..++ +|++++
T Consensus 241 ~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a----~~G~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 241 KPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA----RGGAALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp CCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----CCHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred cCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----chhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence 468899999976543 3444445555433 23478899999622 12335567777899987777 555554
Q ss_pred H
Q 031249 110 E 110 (163)
Q Consensus 110 ~ 110 (163)
+
T Consensus 309 d 309 (328)
T 3e70_C 309 D 309 (328)
T ss_dssp C
T ss_pred c
Confidence 3
No 249
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=71.10 E-value=15 Score=27.10 Aligned_cols=63 Identities=19% Similarity=0.032 Sum_probs=37.4
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcC
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA 102 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 102 (163)
..|.+++|.|.... .+.....+.+.... ...-+|.||.|... ..-.+..+....++++..++.
T Consensus 210 ~~~~~~lv~~~~~~---~~~~~~~~~~~~~~---~i~givlnk~d~~~----~~g~~~~~~~~~~~pi~~i~~ 272 (295)
T 1ls1_A 210 GPDEVLLVLDAMTG---QEALSVARAFDEKV---GVTGLVLTKLDGDA----RGGAALSARHVTGKPIYFAGV 272 (295)
T ss_dssp CCSEEEEEEEGGGT---HHHHHHHHHHHHHT---CCCEEEEECGGGCS----SCHHHHHHHHHHCCCEEEEC-
T ss_pred CCCEEEEEEeCCCc---HHHHHHHHHHhhcC---CCCEEEEECCCCCc----cHHHHHHHHHHHCcCEEEEeC
Confidence 57888999997632 22222233333322 23457899999633 123556677788999777654
No 250
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=68.41 E-value=19 Score=28.34 Aligned_cols=62 Identities=21% Similarity=0.058 Sum_probs=36.8
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEc
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS 101 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~S 101 (163)
..|.++||.|+... .++......+.... ...-+|.||.|.... .-.+..+....+.++..+.
T Consensus 210 ~pd~vlLVvDa~tg---q~av~~a~~f~~~l---~i~GVIlTKlD~~~~----~g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 210 GPDEVLLVLDAMTG---QEALSVARAFDEKV---GVTGLVLTKLDGDAR----GGAALSARHVTGKPIYFAG 271 (425)
T ss_dssp CCSEEEEEEEGGGT---THHHHHHHHHHHHT---CCCEEEEESGGGCSS----CHHHHHHHHHHCCCEEEEE
T ss_pred CCceEEEEEeccch---HHHHHHHHHHHhcC---CceEEEEeCcCCccc----HHHHHHHHHHHCCCEEEEe
Confidence 58899999997643 22223334443322 134678999986321 1244556677788866665
No 251
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=67.75 E-value=9.7 Score=27.80 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=37.2
Q ss_pred cCCcEEEEEEECC-ChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH--HHHHHHHHHcCCeEEE
Q 031249 29 RGAAGALLVYDIT-RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK--EEGEQFAKENGLLFLE 99 (163)
Q Consensus 29 ~~ad~~i~v~d~~-~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~--~~~~~~~~~~~~~~~~ 99 (163)
..+++.+++.|.. ..-+-.+ ...++.+.+ . +++++|.+|.|.....++.. ..+......+++.+|.
T Consensus 110 aRal~~lllldep~~gL~~lD-~~~l~~L~~---~-~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 110 TRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---V-VNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp CSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---T-SEEEEEETTGGGSCHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred heeeeeeEEEecCCCcCCHHH-HHHHHHHHh---c-CcEEEEEeccccCCHHHHHHHHHHHHHHHHHcCccccC
Confidence 3578889999854 2222222 234444433 2 79999999999755322211 2233345566777654
No 252
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=67.39 E-value=6.5 Score=32.34 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=31.0
Q ss_pred hhhhhchhhhccCCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 18 ESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 18 e~~~~~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
.....+...|++...++++++-..+.+ .-..+..+.. .....+.+.|+|+||.|+..
T Consensus 171 ~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~---~v~~~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 171 YKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQ---EVDPEGDRTIGILTKPDLVD 228 (608)
T ss_dssp HHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHH---HHCSSCCSEEEEEECGGGSS
T ss_pred HHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHH---HHhhcCCceEEEecchhhcC
Confidence 344556777776655555555333221 1111222333 33334578999999999753
No 253
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=64.18 E-value=9.3 Score=28.27 Aligned_cols=63 Identities=13% Similarity=-0.022 Sum_probs=36.2
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCC
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLA 76 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~ 76 (163)
+..+|||+...... .......+|.+|+|..... .+...+...++.+.+.. .+ +-+|.|+.|..
T Consensus 216 ~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~-~~~~~~~~~~~~l~~~~---~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 216 LVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGL-NTAKEVSLSMQRLEQAG---VNIKGAILNGVIKR 279 (299)
T ss_dssp EEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTT-SCTTHHHHHHHHHHHTT---CCCCCEEEEECCCC
T ss_pred EEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCC-ChHHHHHHHHHHHHhCC---CCeEEEEEeCCccC
Confidence 34445787433211 1234567899999998653 23445555566665532 33 34778999863
No 254
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=63.90 E-value=16 Score=26.90 Aligned_cols=63 Identities=11% Similarity=-0.078 Sum_probs=38.5
Q ss_pred eeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 10 WSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 10 ~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
..+|||+.-... -.....+.+|++|+|..... .+...+...++.+.+.. ...+-+|.|+.+..
T Consensus 205 VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~g--~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 205 VLIDTPPILAVT-DAAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQNG--IPVKGVILNSIFRR 267 (286)
T ss_dssp EEEECCCTTTCT-HHHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHTT--CCCCEEEEEEECCC
T ss_pred EEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhCC--CCEEEEEEcCcccc
Confidence 334477643221 12345677999999998663 34555666666666543 23456789999863
No 255
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=63.50 E-value=33 Score=23.49 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=36.3
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeE-EEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEE
Q 031249 33 GALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLE 99 (163)
Q Consensus 33 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~ 99 (163)
.+|+|.... ..+..++...++.+.. .+.++ -+|.|+.|... ....+....+.+.++.+++.
T Consensus 140 ~vi~v~~~~-~~~~~~~~~~i~~l~~---~~~~i~gvvlN~~~~~~--~~~~~~~~~l~~~~~~~vl~ 201 (224)
T 1byi_A 140 PVILVVGVK-LGCINHAMLTAQVIQH---AGLTLAGWVANDVTPPG--KRHAEYMTTLTRMIPAPLLG 201 (224)
T ss_dssp CEEEEEECS-TTHHHHHHHHHHHHHH---TTCCEEEEEEECCSSCC--TTHHHHHHHHHHHSSSCEEE
T ss_pred CEEEEecCC-CCcHHHHHHHHHHHHH---CCCcEEEEEEeCCCCch--hhHHHHHHHHHHHcCCCEEE
Confidence 477777764 4566666666666653 23554 47899998532 22233344555567877553
No 256
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=62.15 E-value=11 Score=27.83 Aligned_cols=84 Identities=11% Similarity=0.004 Sum_probs=45.2
Q ss_pred eEeeecccchhhhhh--ch--hhhcc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc
Q 031249 8 FFWSLLQAGQESFRS--IT--RSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~--~~--~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v 81 (163)
.+..+||+|...... +. ...+. ..+.+++|+|.+.. ..++..+.+.+.. . + ..-+|.||.|....
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~-l--~-~~giVltk~D~~~~--- 254 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS-V--P-VNQYIFTKIDETTS--- 254 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS-S--C-CCEEEEECTTTCSC---
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc-C--C-CCEEEEeCCCcccc---
Confidence 344455999654322 11 12222 36788999987643 2334343333321 1 1 23456799997432
Q ss_pred CHHHHHHHHHHcCCeEEEEc
Q 031249 82 SKEEGEQFAKENGLLFLEAS 101 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~S 101 (163)
.-.+..++...++++..+.
T Consensus 255 -~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 -LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp -CHHHHHHHHTCSCCCSEEC
T ss_pred -hhHHHHHHHHHCcCEEEEE
Confidence 2355667778888865544
No 257
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=61.83 E-value=19 Score=24.30 Aligned_cols=71 Identities=8% Similarity=-0.081 Sum_probs=41.0
Q ss_pred hhccCCcEEEEEEECCChHHHHHHHHHHHHHHH---hcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe
Q 031249 26 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQ---HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 96 (163)
Q Consensus 26 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~---~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~ 96 (163)
..+..+|++||.+-.-...-...+..++..+.. ....++|+.++++--.......-...+....+...++.
T Consensus 48 ~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g~~~g~~~~~l~~l~~~l~~~g~~ 121 (188)
T 2ark_A 48 EDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFL 121 (188)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCE
T ss_pred HHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHCCcE
Confidence 345678999999987654434456667776644 12256899888885432221111123344445556764
No 258
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=59.61 E-value=15 Score=28.30 Aligned_cols=49 Identities=24% Similarity=0.095 Sum_probs=33.3
Q ss_pred CCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 63 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 63 ~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
..|++++.||+|.. ..++...+.+ ...++++|+..+.|++.+.+.+.+.
T Consensus 249 ~~p~i~v~nKid~~-----~~eele~l~~--~~~~~~is~~~e~gLd~Li~~~y~~ 297 (376)
T 4a9a_A 249 YMPAIYVLNKIDSL-----SIEELELLYR--IPNAVPISSGQDWNLDELLQVMWDR 297 (376)
T ss_dssp EECEEEEEECGGGS-----CHHHHHHHTT--STTEEECCTTTCTTHHHHHHHHHHH
T ss_pred ccceEEEEeccccc-----CHHHHHHHhc--ccchhhhhhhhcccchhHHHHHHHH
Confidence 47999999999963 3344333321 2247889999999988776665443
No 259
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=59.19 E-value=4.7 Score=32.65 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=57.6
Q ss_pred chhhhhhc-hhhhccCCcEEEEEEEC----------------CChHH----HHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 16 GQESFRSI-TRSYYRGAAGALLVYDI----------------TRRET----FNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 16 G~e~~~~~-~~~~~~~ad~~i~v~d~----------------~~~~s----~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
|.|+|-.+ .+..=-.-|++++|-.+ .|.+. +..+...++.+++ .++|++|.+|+..
T Consensus 309 GaEKF~dIKcR~~gl~P~avVlVATvRALK~hGG~~~~~l~~en~~al~~G~~NL~kHien~~~---fGvpvVVaiN~F~ 385 (557)
T 3pzx_A 309 GAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGK---FGVPAVVAINAFP 385 (557)
T ss_dssp HHHHHHHTHHHHHTCCCCEEEEEECHHHHHHHTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHT---TTCCEEEEEECCT
T ss_pred chhhhcCCcccccCCCCCEEEEEeehHHHHhcCCCChhhcCccCHHHHHHHHHHHHHHHHHHHH---cCCCeEEEEeCCC
Confidence 35666542 22222346888888742 12222 3334455555554 4699999999987
Q ss_pred CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
...+. ..+.+++++.+.|..+..+=++-|+|-.++-+.+++.+.
T Consensus 386 tDT~a--Ei~~v~~~~~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~ 429 (557)
T 3pzx_A 386 TDTEA--ELNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLE 429 (557)
T ss_dssp TCCHH--HHHHHHHHCCSSEEEEECHHHHGGGGGHHHHHHHHHHHH
T ss_pred CCCHH--HHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHHh
Confidence 53322 234455666666766544445667777777777666553
No 260
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=59.19 E-value=33 Score=22.10 Aligned_cols=82 Identities=10% Similarity=-0.043 Sum_probs=50.4
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 031249 29 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 108 (163)
Q Consensus 29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (163)
.++|++.+....+ .....+..+++.+++....++++++.|.-.-- . -...+....+++.|+..+. ..+.++
T Consensus 53 ~~~d~v~lS~~~~--~~~~~~~~~i~~l~~~g~~~i~v~vGG~~~~~-~---~~~~~~~~~~~~~G~d~~~---~~g~~~ 123 (137)
T 1ccw_A 53 TKADAILVSSLYG--QGEIDCKGLRQKCDEAGLEGILLYVGGNIVVG-K---QHWPDVEKRFKDMGYDRVY---APGTPP 123 (137)
T ss_dssp HTCSEEEEEECSS--THHHHHTTHHHHHHHTTCTTCEEEEEESCSSS-S---CCHHHHHHHHHHTTCSEEC---CTTCCH
T ss_pred cCCCEEEEEecCc--CcHHHHHHHHHHHHhcCCCCCEEEEECCCcCc-h---HhhhhhHHHHHHCCCCEEE---CCCCCH
Confidence 3678777766554 44556777888887754335777666643210 1 1234445677888987443 344578
Q ss_pred HHHHHHHHHHH
Q 031249 109 EEAFIKTAAKI 119 (163)
Q Consensus 109 ~~lf~~l~~~~ 119 (163)
.++..++.+.+
T Consensus 124 ~~~~~~l~~~~ 134 (137)
T 1ccw_A 124 EVGIADLKKDL 134 (137)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887653
No 261
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=58.52 E-value=21 Score=27.34 Aligned_cols=65 Identities=11% Similarity=0.072 Sum_probs=33.6
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH------HHHHHHHHHHHHHHhcC-CCC-eEEEEeeCCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE------TFNHLSSWLEDARQHAN-PNM-SIMLVGNKCD 74 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~------s~~~~~~~~~~l~~~~~-~~~-p~ilv~nK~D 74 (163)
.+.|+| ||+.-. ......+..+|.+|++...+... .+..+...++.+.+... ..+ .++.+.|+.+
T Consensus 249 D~VIID--~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 249 DFIFID--TGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT 321 (403)
T ss_dssp SEEEEE--ECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC--
T ss_pred CEEEEE--CCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC
Confidence 345555 665332 33445666899999999865321 12333344444444321 122 2466788887
No 262
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=57.84 E-value=49 Score=24.68 Aligned_cols=62 Identities=16% Similarity=0.045 Sum_probs=35.9
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEc
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS 101 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~S 101 (163)
.+|.+++|.+.... .+.+... +.+.. .-...-+|.||.|.... .-.+..+....++|+..+.
T Consensus 227 ~~d~vllVl~a~~~--~~~l~~~-~~~~~---~~~i~GvVltk~d~~~~----~g~~~~~~~~~~~Pi~~i~ 288 (320)
T 1zu4_A 227 APHEVLLVIDATTG--QNGVIQA-EEFSK---VADVSGIILTKMDSTSK----GGIGLAIKELLNIPIKMIG 288 (320)
T ss_dssp CCSEEEEEEEGGGT--HHHHHHH-HHHTT---TSCCCEEEEECGGGCSC----TTHHHHHHHHHCCCEEEEE
T ss_pred CCceEEEEEECCCc--HHHHHHH-HHHhh---cCCCcEEEEeCCCCCCc----hhHHHHHHHHHCcCEEEEe
Confidence 47899999998743 2333221 22221 11233578999996332 1255567777898876664
No 263
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=57.21 E-value=40 Score=22.42 Aligned_cols=82 Identities=7% Similarity=0.006 Sum_probs=47.9
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 031249 29 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 108 (163)
Q Consensus 29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (163)
.++|++.+....+ .....+..+++.+++....++++++.|.- ..++. ..++..|+..+. -.+.++
T Consensus 68 ~~~diV~lS~~~~--~~~~~~~~~i~~L~~~g~~~i~v~vGG~~---------~~~~~-~~l~~~G~d~v~---~~~~~~ 132 (161)
T 2yxb_A 68 EDVDVIGVSILNG--AHLHLMKRLMAKLRELGADDIPVVLGGTI---------PIPDL-EPLRSLGIREIF---LPGTSL 132 (161)
T ss_dssp TTCSEEEEEESSS--CHHHHHHHHHHHHHHTTCTTSCEEEEECC---------CHHHH-HHHHHTTCCEEE---CTTCCH
T ss_pred cCCCEEEEEeech--hhHHHHHHHHHHHHhcCCCCCEEEEeCCC---------chhcH-HHHHHCCCcEEE---CCCCCH
Confidence 3677776665444 45677778888887754345777777642 12222 245678887433 123456
Q ss_pred HHHHHHHHHHHHHHHhh
Q 031249 109 EEAFIKTAAKILQNIQE 125 (163)
Q Consensus 109 ~~lf~~l~~~~~~~~~~ 125 (163)
.+....+.+.+..+...
T Consensus 133 ~~~~~~~~~~~~~~~~~ 149 (161)
T 2yxb_A 133 GEIIEKVRKLAEEKRMR 149 (161)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 67776666655554333
No 264
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=56.02 E-value=20 Score=24.23 Aligned_cols=75 Identities=9% Similarity=0.050 Sum_probs=43.5
Q ss_pred hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh----cCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEE
Q 031249 25 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH----ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLE 99 (163)
Q Consensus 25 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~ 99 (163)
...+..+|++||.+-.-...-...+..|+..+... ...++|+.++++--...............++...|+.++.
T Consensus 65 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~ 143 (199)
T 2zki_A 65 LDDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVP 143 (199)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECC
T ss_pred HHHHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeC
Confidence 34567899999998765533223344555554221 2256888888775432111222345666777777877543
No 265
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=53.44 E-value=22 Score=23.99 Aligned_cols=74 Identities=12% Similarity=0.054 Sum_probs=42.0
Q ss_pred hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh----cCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEE
Q 031249 25 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH----ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL 98 (163)
Q Consensus 25 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~ 98 (163)
...+..+|++||.+-.-...-...+..|+..+... ...++|+.++++--.......-.......++...++.++
T Consensus 66 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~ 143 (200)
T 2a5l_A 66 LEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVL 143 (200)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 44577899999999765533223344555554331 225678888877543211111223455666667776643
No 266
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=52.62 E-value=10 Score=26.22 Aligned_cols=72 Identities=8% Similarity=0.045 Sum_probs=41.7
Q ss_pred hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe
Q 031249 24 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 96 (163)
Q Consensus 24 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~ 96 (163)
+...+..||++||+.-.-+..-.-.+..|+..+......++|++++++- .............+.+....++.
T Consensus 79 ~~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~t~-G~~~~~~~~~~~L~~il~~lg~~ 150 (191)
T 3k1y_A 79 ITSALSASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAATA-GSARHSLVLDYALRPLLSYMRAV 150 (191)
T ss_dssp HHHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEEEEE-SSSTTTTHHHHTHHHHHHHTTCE
T ss_pred HHHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEEEeC-CCcchhhHHHHHHHHHHHHCCCE
Confidence 4446779999999997765433334555665554323357899888873 22221111112256666677765
No 267
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=51.63 E-value=13 Score=25.80 Aligned_cols=73 Identities=10% Similarity=-0.075 Sum_probs=42.6
Q ss_pred hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh---cCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeE
Q 031249 24 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH---ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLF 97 (163)
Q Consensus 24 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~---~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~ 97 (163)
+...+..||++||+.-.-+..---.++.|+..+... .-.++|+.++++---... ........+.+....+..+
T Consensus 67 ~~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~il~~lg~~~ 142 (199)
T 4hs4_A 67 MAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIG-GARAQNHLRQSLVFLDAYV 142 (199)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSSSC-SHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCCcc-cHHHHHHHHHHHHHcCCEE
Confidence 445678999999998765533223345555555431 225789999987532111 1122345666667777653
No 268
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=47.25 E-value=51 Score=22.51 Aligned_cols=56 Identities=11% Similarity=0.003 Sum_probs=31.8
Q ss_pred hhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 19 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 19 ~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
.....+...++.+..+|+|++-+-..|--.+.++...+......+..++-|.-+.|
T Consensus 51 ~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ 106 (176)
T 3jrn_A 51 RFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVE 106 (176)
T ss_dssp --------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEECSSC
T ss_pred chHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEEecCC
Confidence 34444556788999999999988766655555544444333334456676766665
No 269
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=46.24 E-value=9 Score=26.27 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=40.3
Q ss_pred hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH-HHHHHHHHcCCeE
Q 031249 26 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE-EGEQFAKENGLLF 97 (163)
Q Consensus 26 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~-~~~~~~~~~~~~~ 97 (163)
..+..+|++||++-.-...-...+..++..+......++|++++++ ...... ....+ ..+.++...|+.+
T Consensus 65 ~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t-gg~~~~-~~a~~~~l~~~l~~~g~~~ 135 (197)
T 2vzf_A 65 DATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKAALPLAT-GGSPAH-VLALDYGLRPVLHSMGVRH 135 (197)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE-ESSGGG-GGHHHHTHHHHHHTTTCSE
T ss_pred HHHHHCCEEEEEeCccCCCCCHHHHHHHHhccccccCCCEEEEEEE-CCCcch-hhHHHHHHHHHHHHcCCEe
Confidence 4577899999999765533223344455544322235689999988 333221 11122 4566777777654
No 270
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=46.18 E-value=7 Score=26.19 Aligned_cols=73 Identities=7% Similarity=-0.094 Sum_probs=42.6
Q ss_pred hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEE
Q 031249 25 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL 98 (163)
Q Consensus 25 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~ 98 (163)
...+..+|++||+.-.-+..-...+..++..+......++|+.++++--.... ........+.++...++.++
T Consensus 58 ~~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~~~~~gK~~~~~~~sgg~~g-~~~a~~~l~~~l~~~g~~~v 130 (174)
T 3gfs_A 58 KQRVTKADAIVLLSPEYHSGMSGALKNALDFLSSEQFKYKPVALLAVAGGGDG-GINALNNMRTVMRGVYANVI 130 (174)
T ss_dssp HHHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCHHHHTTCEEEEEEECCSTTC-SHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCHhhhCCCcEEEEEECCCChh-HHHHHHHHHHHHHHcCCEEe
Confidence 34567899999999776543333444455444222224689988886433211 11224566777777887643
No 271
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=46.07 E-value=22 Score=24.65 Aligned_cols=51 Identities=2% Similarity=0.057 Sum_probs=32.0
Q ss_pred hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeC
Q 031249 18 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNK 72 (163)
Q Consensus 18 e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK 72 (163)
+.....++.-+++++.+|+++.-.-..+- -..| ++.... ..++|+|+|-..
T Consensus 67 ~tIKrrLReRI~~Sk~vIllIs~~T~~s~--~v~w--EIe~Ai~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 67 KTLKPRLHTRLDNSKNIILFLSSITANSR--ALRE--EMNYGIGTKGLPVIVIYPD 118 (189)
T ss_dssp TTHHHHHHHHHHTEEEEEEECCTTCCCCH--HHHH--HHHHHTTTTCCCEEEEETT
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCccccc--hhHH--HHHHHHHhcCCcEEEEECC
Confidence 33444566778899999999875544332 2233 555544 467999888443
No 272
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=43.77 E-value=29 Score=23.77 Aligned_cols=75 Identities=5% Similarity=-0.020 Sum_probs=42.2
Q ss_pred hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh----cCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEE
Q 031249 25 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH----ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLE 99 (163)
Q Consensus 25 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~ 99 (163)
...+..+|++||.+-.-...-...+..|+..+... ...++|+.++++--...............++...++.++.
T Consensus 73 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~ 151 (211)
T 1ydg_A 73 PADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTP 151 (211)
T ss_dssp HHHHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECC
T ss_pred HHHHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeC
Confidence 44567899999998765432223344555554321 1246788887764332111222345666677777766544
No 273
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=42.43 E-value=27 Score=23.91 Aligned_cols=74 Identities=9% Similarity=-0.002 Sum_probs=43.1
Q ss_pred hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh---cCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEE
Q 031249 24 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH---ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL 98 (163)
Q Consensus 24 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~---~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~ 98 (163)
+...+..||++||+.-.-+..---.+..++..+... ...++|+.++++---... ........+.+....+..++
T Consensus 66 l~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~g-g~~a~~~Lr~~l~~lg~~v~ 142 (193)
T 3svl_A 66 LAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIG-GARCQYHLRQILVFLDAMVM 142 (193)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcc-hHHHHHHHHHHHHHCCCEEc
Confidence 445678999999998765533223344555555431 225789999887432211 11224556667777776543
No 274
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=42.05 E-value=49 Score=20.74 Aligned_cols=67 Identities=10% Similarity=0.049 Sum_probs=39.3
Q ss_pred hccCCcEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeE
Q 031249 27 YYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLF 97 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~ 97 (163)
-+.++|.+||........-.. .+..++..+... ..++++.++++--.. . .-........+...|..+
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~f~t~g~~-~--~~a~~~l~~~l~~~G~~~ 110 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVALFGSYGWG-D--GKWMRDFEERMNGYGCVV 110 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEEEEEESSS-C--SHHHHHHHHHHHHTTCEE
T ss_pred HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEEEEecCCC-C--ChHHHHHHHHHHHCCCEE
Confidence 456889999998754322111 344555555443 356899988874321 1 123466667777777653
No 275
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=41.18 E-value=24 Score=26.53 Aligned_cols=55 Identities=16% Similarity=0.079 Sum_probs=35.6
Q ss_pred HHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249 56 ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 56 l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
+.+......|+| |++|-+.+ +++..+.+++.+++++.++..+...+..+..+|..
T Consensus 73 ler~l~~~~P~I-Iltrg~~~------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~ 127 (314)
T 1ko7_A 73 MRKLCRPETPAI-IVTRDLEP------PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEH 127 (314)
T ss_dssp HHHHCCTTCCCE-EECTTCCC------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCEE-EEeCCCCC------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHH
Confidence 333333456654 56666652 45677788889999998888776666666555443
No 276
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=40.91 E-value=38 Score=21.04 Aligned_cols=68 Identities=12% Similarity=0.037 Sum_probs=39.3
Q ss_pred hccCCcEEEEEEECCChHHHHH--HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEE
Q 031249 27 YYRGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL 98 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~ 98 (163)
.+..+|++||+.......-... +..+++.+.. ...++|+.++++--.. ..-........+...|..++
T Consensus 43 ~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~-~l~~k~~~~~~t~g~~---~~~~~~~l~~~l~~~g~~~~ 112 (137)
T 2fz5_A 43 DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP-KLKGKKVGLFGSYGWG---SGEWMDAWKQRTEDTGATVI 112 (137)
T ss_dssp HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG-GCSSCEEEEEEEESSC---CSHHHHHHHHHHHHTTCEEE
T ss_pred HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh-hcCCCEEEEEEecCCC---CchHHHHHHHHHHHCCCEEc
Confidence 3568899999986543211112 4455555533 2256899988874321 11234566667777787643
No 277
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=40.01 E-value=24 Score=24.25 Aligned_cols=107 Identities=8% Similarity=0.082 Sum_probs=55.0
Q ss_pred hhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEE-
Q 031249 24 TRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL- 98 (163)
Q Consensus 24 ~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~-~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~- 98 (163)
+...+..||++|++.---+ +-.++.+..|+...... .-.++|+.++++=.-... ........+..+...+..++
T Consensus 61 l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~G-g~~a~~~Lr~vl~~lg~~v~~ 139 (190)
T 3u7r_A 61 LKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIG-AALAQARLKNDLLHVGTVMMS 139 (190)
T ss_dssp HHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTT-THHHHHHHHHHHHTTTCEECC
T ss_pred HHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhh-HHHHHHHHHHHHHHcCCEEcc
Confidence 4567889999999975443 44566666665432111 125689998875432211 11223445556666665422
Q ss_pred ----EEc----CCCC------CCHHHHHHHHHHHHHHHHhhcccccc
Q 031249 99 ----EAS----ARTA------QNVEEAFIKTAAKILQNIQEGALDAV 131 (163)
Q Consensus 99 ----~~S----a~~~------~~i~~lf~~l~~~~~~~~~~~~~~~~ 131 (163)
.+. +.+. ..+.+-++.++..+....++...|..
T Consensus 140 ~p~~~i~~~~~~fd~~G~l~de~~~~~l~~~~~~~~~~i~~~~~e~~ 186 (190)
T 3u7r_A 140 MPEAYIQWHAEAYAADGSVTDEKTAKFLQGFVDAFVDWIEKHGLEHH 186 (190)
T ss_dssp CSCCEEECCGGGBCTTSCBCSHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred CCEEEEeccHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 121 1111 22344555666666665555554443
No 278
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=36.84 E-value=23 Score=23.24 Aligned_cols=95 Identities=8% Similarity=0.050 Sum_probs=45.2
Q ss_pred ccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHc
Q 031249 14 QAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN 93 (163)
Q Consensus 14 t~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~ 93 (163)
.+| +.+...+...++.++.+|+|++.+-..|-....++...+.........+|.|.-+.|. ..++.. ++
T Consensus 49 ~~G-~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~~~~~~vIpv~~~v~~---~~lp~~-----Lr-- 117 (146)
T 3ub2_A 49 TPG-GAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSR---AAYPPE-----LR-- 117 (146)
T ss_dssp -----CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSSSSSSEEEEEECSCCG---GGSCGG-----GG--
T ss_pred ccc-ccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHhhcCCcEEEEEcCCCh---hhCCHH-----Hh--
Confidence 344 3333444567889999999998554433333333333333321222355666655442 223311 00
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 94 GLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 94 ~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
.+.++-. .+.+..|..+.+.+.+.+.
T Consensus 118 ~~~~id~-----~~~d~~f~~l~~~v~~~~~ 143 (146)
T 3ub2_A 118 FMYYVDG-----RGPDGGFRQVKEAVMRYLQ 143 (146)
T ss_dssp GSCCEET-----TSGGGGHHHHHHHHHHHHT
T ss_pred Ceeeeec-----cChHhhHHHHHHHHHHHHH
Confidence 1222222 2456777777777666544
No 279
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=36.39 E-value=31 Score=23.15 Aligned_cols=74 Identities=4% Similarity=-0.046 Sum_probs=41.1
Q ss_pred hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh----cCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEE
Q 031249 25 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH----ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLE 99 (163)
Q Consensus 25 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~ 99 (163)
...+..+|++||.+-.-...-...+..|+..+... ...++|+.++++--.. ........+...++...++.++.
T Consensus 63 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 63 PQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp GGGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 34677899999998765433223344455544321 2256788888775432 11112234455566667776544
No 280
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=36.23 E-value=15 Score=24.91 Aligned_cols=71 Identities=11% Similarity=-0.061 Sum_probs=41.0
Q ss_pred hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh---cCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeE
Q 031249 26 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQH---ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLF 97 (163)
Q Consensus 26 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~---~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~ 97 (163)
..+..+|++||++-.-...--..+..|+..+... ...++|+.++++--.... ........+.++...|+.+
T Consensus 68 ~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~ 141 (193)
T 1rtt_A 68 EQIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHP 141 (193)
T ss_dssp HHHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEE
T ss_pred HHHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEE
Confidence 4567899999987654432223455666666432 124689999887633211 1122345566666667653
No 281
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=35.77 E-value=23 Score=24.17 Aligned_cols=71 Identities=6% Similarity=-0.062 Sum_probs=43.4
Q ss_pred hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh----------cCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHc
Q 031249 24 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH----------ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN 93 (163)
Q Consensus 24 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~----------~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~ 93 (163)
+...+..||++||++-.-+..--..+..|+..+... .-.++|++++.+--.... .......+.++...
T Consensus 61 ~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g~--~~~~~~l~~~l~~~ 138 (192)
T 3fvw_A 61 AREEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGASP--EEVFEDYRSLLPFI 138 (192)
T ss_dssp HHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHT
T ss_pred HHHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcch--hHHHHHHHHHHHHc
Confidence 445678999999998765543334455677766531 124689888876544211 12235666777777
Q ss_pred CCe
Q 031249 94 GLL 96 (163)
Q Consensus 94 ~~~ 96 (163)
|+.
T Consensus 139 G~~ 141 (192)
T 3fvw_A 139 RMH 141 (192)
T ss_dssp TCE
T ss_pred CCe
Confidence 876
No 282
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=35.11 E-value=33 Score=23.42 Aligned_cols=49 Identities=10% Similarity=0.071 Sum_probs=32.6
Q ss_pred hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh-------------cCCCCeEEEEeeCC
Q 031249 25 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-------------ANPNMSIMLVGNKC 73 (163)
Q Consensus 25 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~-------------~~~~~p~ilv~nK~ 73 (163)
...+..||++||++-.-...--..+..|+..+... .-.+++++++.+--
T Consensus 68 ~~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g 129 (196)
T 3lcm_A 68 RDLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHN 129 (196)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECS
T ss_pred HHHHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCC
Confidence 33567899999999876544334566788877431 12468888887653
No 283
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=34.89 E-value=8.5 Score=25.46 Aligned_cols=57 Identities=9% Similarity=-0.063 Sum_probs=30.4
Q ss_pred hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 18 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 18 e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
+.+...+...++.++.+|+|++.+...|-....++...+......+..++.|.-+.|
T Consensus 61 ~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~ 117 (154)
T 3h16_A 61 DSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVS 117 (154)
T ss_dssp CCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCC
T ss_pred cHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCC
Confidence 344445577789999999999854333322222222222211122345666666655
No 284
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=34.62 E-value=30 Score=22.88 Aligned_cols=73 Identities=10% Similarity=-0.031 Sum_probs=39.9
Q ss_pred hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh-----------cCCCCeEEEEeeCCCCCC-CCccCHHHHHHHHHHc
Q 031249 26 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-----------ANPNMSIMLVGNKCDLAH-RRAVSKEEGEQFAKEN 93 (163)
Q Consensus 26 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~-----------~~~~~p~ilv~nK~D~~~-~~~v~~~~~~~~~~~~ 93 (163)
..+..+|++||++-.-...--..+..|+..+... ...++|++++.+--.-.. .........+.++...
T Consensus 67 ~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~ 146 (184)
T 1rli_A 67 ERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFM 146 (184)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHc
Confidence 4577999999999875533233344555554321 113578888877332100 0011234455667777
Q ss_pred CCeEE
Q 031249 94 GLLFL 98 (163)
Q Consensus 94 ~~~~~ 98 (163)
|+.++
T Consensus 147 G~~~~ 151 (184)
T 1rli_A 147 GMSFK 151 (184)
T ss_dssp TCEEE
T ss_pred CCccc
Confidence 87643
No 285
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=33.98 E-value=89 Score=19.72 Aligned_cols=69 Identities=14% Similarity=0.012 Sum_probs=37.6
Q ss_pred cc-CCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe
Q 031249 28 YR-GAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 96 (163)
Q Consensus 28 ~~-~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~ 96 (163)
+. .+|++||+...... .--..+..+++.+......++++.++++---....-.-........+...|..
T Consensus 46 l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~ 118 (148)
T 3f6r_A 46 LADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGAT 118 (148)
T ss_dssp TTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCE
T ss_pred hcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 44 78999998865331 22233445555554333356888888662100111122356667777777765
No 286
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=32.82 E-value=65 Score=24.48 Aligned_cols=64 Identities=5% Similarity=-0.063 Sum_probs=33.4
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH------HHHHHHHHHHHHHHhcCCCCe---EEEEeeCCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE------TFNHLSSWLEDARQHANPNMS---IMLVGNKCD 74 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~------s~~~~~~~~~~l~~~~~~~~p---~ilv~nK~D 74 (163)
.+.|+| ||+.- .......+..+|.+|++...+... .+..+...++.+.+.. .+.+ ++.+.++.+
T Consensus 246 D~ViiD--~pp~~--~~~~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~giv~~~~~~~ 318 (398)
T 3ez2_A 246 DFILVD--SGPHL--DAFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEG-CECQLATNIGFMSKLS 318 (398)
T ss_dssp SEEEEE--ECSCC--SHHHHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTS-CCCCCCCEEEEEEEEC
T ss_pred CEEEEe--CCCCc--cHHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcC-CCCceeEEEEEEecCC
Confidence 345555 66543 223344566899999999875322 1233333444444432 2333 344566655
No 287
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=31.46 E-value=31 Score=23.15 Aligned_cols=70 Identities=4% Similarity=-0.070 Sum_probs=40.5
Q ss_pred hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEE
Q 031249 25 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL 98 (163)
Q Consensus 25 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~ 98 (163)
...+..+|++||++-.-...--..+..|+..+... ..++|++++.+ -.. . ........+.++...|+.++
T Consensus 79 ~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~~-l~gK~~~~~~~-G~~-~-~~~~~~~l~~~l~~~G~~~~ 148 (191)
T 1t0i_A 79 SRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHE-WHGKPALVVSY-GGH-G-GSKCNDQLQEVLHGLKMNVI 148 (191)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCSTT-TTTCEEEEEEE-ETT-T-THHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHhh-cCCCEEEEEEe-CCc-c-hhhHHHHHHHHHHHCCCEEc
Confidence 45677999999999876543233445566555321 24678887765 221 1 11123455666777787643
No 288
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=30.83 E-value=1.7e+02 Score=21.92 Aligned_cols=65 Identities=9% Similarity=-0.056 Sum_probs=39.0
Q ss_pred ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe
Q 031249 28 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 96 (163)
Q Consensus 28 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~ 96 (163)
+..+|++||....-...-...+..++..+......++++.++++--- ..-........+...|..
T Consensus 301 ~~~~d~ii~gsp~~~~~~~~~~~~~l~~l~~~~l~~k~~~~f~t~g~----~~~a~~~l~~~l~~~G~~ 365 (402)
T 1e5d_A 301 ISDAGAVIVGSPTHNNGILPYVAGTLQYIKGLRPQNKIGGAFGSFGW----SGESTKVLAEWLTGMGFD 365 (402)
T ss_dssp HHTCSEEEEECCCBTTBCCHHHHHHHHHHHHTCCCSCEEEEEEEESS----SCHHHHHHHHHHHHTTCB
T ss_pred HHHCCEEEEECCccCCCchHHHHHHHHHhhhcccCCCEEEEEEcCCC----ccHHHHHHHHHHHHCCCE
Confidence 56789999997544322222455666666553335688988887421 122345566677777765
No 289
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=30.56 E-value=54 Score=22.38 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=9.8
Q ss_pred ccCCcEEEEEEECC
Q 031249 28 YRGAAGALLVYDIT 41 (163)
Q Consensus 28 ~~~ad~~i~v~d~~ 41 (163)
+.++|++|.+||..
T Consensus 128 vd~sD~liavyDg~ 141 (181)
T 2nx2_A 128 IDKSDGLLLLYDPE 141 (181)
T ss_dssp HHHSSEEEEECCTT
T ss_pred HHHCCEEEEEEcCC
Confidence 45677777777754
No 290
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=30.11 E-value=43 Score=23.59 Aligned_cols=70 Identities=4% Similarity=-0.126 Sum_probs=41.6
Q ss_pred hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh----cCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeE
Q 031249 26 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQH----ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLF 97 (163)
Q Consensus 26 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~ 97 (163)
..+..||++||.+-.-...-...+..|+..+... ...++|++++++--.. . ..........++...|+.+
T Consensus 75 ~~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~-g-~~~~~~~l~~~l~~~G~~~ 148 (242)
T 1sqs_A 75 KELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN-G-SDNVSEYLRDIFSYMGGQI 148 (242)
T ss_dssp HHHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC-C-SCCHHHHHHHHHHHTTCEE
T ss_pred HHHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC-c-hhhHHHHHHHHHHHCCCee
Confidence 3467899999999765533333455566665221 1246788888664321 1 1123455667777788763
No 291
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=29.78 E-value=1.3e+02 Score=20.96 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=21.7
Q ss_pred ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 28 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 28 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
-+++||+|++-... ...++.+.+ .++|+|++....+
T Consensus 61 ~~~vdgiIi~~~~~--------~~~~~~l~~---~~iPvV~i~~~~~ 96 (276)
T 3jy6_A 61 SRGFDGLILQSFSN--------PQTVQEILH---QQMPVVSVDREMD 96 (276)
T ss_dssp TTTCSEEEEESSCC--------HHHHHHHHT---TSSCEEEESCCCT
T ss_pred hCCCCEEEEecCCc--------HHHHHHHHH---CCCCEEEEecccC
Confidence 45789988764322 123344433 3589998876654
No 292
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=35.61 E-value=11 Score=26.04 Aligned_cols=49 Identities=10% Similarity=-0.018 Sum_probs=29.1
Q ss_pred hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh---cCCCCeEEEEeeC
Q 031249 24 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH---ANPNMSIMLVGNK 72 (163)
Q Consensus 24 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~---~~~~~p~ilv~nK 72 (163)
+...+..||++||+.-.-+..--..+..++..+... ...++|+.++++-
T Consensus 67 ~~~~i~~AD~iIi~tP~Y~~s~p~~lK~~iD~l~~~~~~~l~gK~v~~v~ts 118 (199)
T 3s2y_A 67 MAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
Confidence 445677899999998665433223344455544332 2246788888753
No 293
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=29.43 E-value=57 Score=22.07 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=37.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh--------cCCCCeEEEEeeC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH--------ANPNMSIMLVGNK 72 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~--------~~~~~p~ilv~nK 72 (163)
.+.+.|++. ..... -....+..||++||.+-+-...--..+..|+..+... .-.+++++++.+-
T Consensus 30 ~v~v~dL~~--~~D~~-~~~~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~ 101 (177)
T 3ha2_A 30 NVTWHPLVA--DFNVE-QEQSLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVST 101 (177)
T ss_dssp TEEEEECCT--TCCHH-HHHHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEE
T ss_pred CEEEEECCC--cccHH-HHHHHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeC
Confidence 456666533 11111 1245678999999999875543334456677775321 1246788888664
No 294
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=29.15 E-value=1.7e+02 Score=21.48 Aligned_cols=64 Identities=8% Similarity=-0.109 Sum_probs=38.1
Q ss_pred ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEc
Q 031249 28 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS 101 (163)
Q Consensus 28 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~S 101 (163)
....+.++++.|...... +...+..+.+.. -..+++.||.|.... .-.+..+....+.++..+.
T Consensus 218 ~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~---~~t~iivTh~d~~a~----gg~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 218 PEEPKEVWLVLDAVTGQN---GLEQAKKFHEAV---GLTGVIVTKLDGTAK----GGVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp TTCCSEEEEEEETTBCTH---HHHHHHHHHHHH---CCSEEEEECTTSSCC----CTTHHHHHHHHCCCEEEEE
T ss_pred cCCCCeEEEEEcHHHHHH---HHHHHHHHHHHc---CCcEEEEECCccccc----ccHHHHHHHHHCCCeEEEe
Confidence 345778889999876543 223344444332 134778999985321 1233456667788876665
No 295
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=29.05 E-value=88 Score=21.72 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=29.4
Q ss_pred cCCcEEEEEEECCChHHH---------------------------HHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 29 RGAAGALLVYDITRRETF---------------------------NHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 29 ~~ad~~i~v~d~~~~~s~---------------------------~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
.++|.+|++=|+.+.... +....+++.+.+ .+.|+++|.-..|.
T Consensus 31 ~~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~---~~~pv~~v~GNHD~ 101 (260)
T 2yvt_A 31 KQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFREIGE---LGVKTFVVPGKNDA 101 (260)
T ss_dssp HCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHHHHHT---TCSEEEEECCTTSC
T ss_pred cCCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHHHHHHHHHHHHHHHHHh---cCCcEEEEcCCCCc
Confidence 478999999999875433 224445555543 24788888666675
No 296
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=29.03 E-value=62 Score=24.61 Aligned_cols=66 Identities=6% Similarity=-0.096 Sum_probs=41.2
Q ss_pred hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHHHHHHHHHH-cCCe
Q 031249 27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLL 96 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~-~~~~ 96 (163)
.+..+|++||..-.-...-...+..++..+..... .++|+.++++--.. . . .......++.. .|+.
T Consensus 304 ~l~~~D~iiigsP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~~t~g~~-~-~--a~~~l~~~l~~~~g~~ 371 (414)
T 2q9u_A 304 HTYDSGAVAFASPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAFGAFGWS-N-R--AVPDIVAELRDGCKAD 371 (414)
T ss_dssp HHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEEEEESSS-C-C--HHHHHHHHHHHTSCCB
T ss_pred HHHhCCEEEEEcCccCcCchHHHHHHHHHHHhhcccCCCEEEEEEecCCC-c-h--hHHHHHHHHHhhcCcE
Confidence 56689999999876543323345566666654333 46888888775322 1 1 34566677777 7755
No 297
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=28.51 E-value=75 Score=21.12 Aligned_cols=44 Identities=7% Similarity=0.001 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEE
Q 031249 50 SSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEA 100 (163)
Q Consensus 50 ~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~ 100 (163)
....+.+.+. +.|+|++|...... -..++..++++..+++++..
T Consensus 25 ~~aa~~L~~A---krPvil~G~g~~~~----~a~~~l~~lae~~~iPV~~t 68 (170)
T 3cf4_G 25 EMAAKIISKA---KRPLLMVGTLALDP----ELLDRVVKISKAANIPIAAT 68 (170)
T ss_dssp HHHHHHHHHC---SSEEEEECSTTCCH----HHHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHcC---CCCEEEECCCccch----hHHHHHHHHHHHhCCCEEEC
Confidence 3344445443 48999999876531 13567888999999997643
No 298
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=28.12 E-value=29 Score=24.96 Aligned_cols=71 Identities=4% Similarity=-0.039 Sum_probs=42.1
Q ss_pred hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh-----cCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe
Q 031249 24 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-----ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 96 (163)
Q Consensus 24 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~-----~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~ 96 (163)
+...+..||++||+.-.-+..-.-.+..|+..+... ...++|+.++++--.. . ........+.++...++.
T Consensus 92 l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-g-g~~a~~~Lr~~l~~lg~~ 167 (247)
T 2q62_A 92 LRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-Q-SFNAVNQMRILGRWMRMI 167 (247)
T ss_dssp HHHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-C-CCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-c-HHHHHHHHHHHHHHCCCE
Confidence 345677899999999776543333445555555321 1246899888874221 1 112345566667777765
No 299
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=28.07 E-value=80 Score=21.22 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=23.7
Q ss_pred hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249 27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG 70 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~ 70 (163)
.++.||++|.++|....++=...+ +-.... .++|++++-
T Consensus 78 ~i~~aD~vVA~ldg~~~D~GTa~E--iGyA~a---lgKPVv~l~ 116 (167)
T 1s2d_A 78 GISNATCGVFLYDMDQLDDGSAFX--IGFMRA---MHKPVILVP 116 (167)
T ss_dssp HHHHCSEEEEEEESSSCCHHHHHH--HHHHHH---TTCCEEEEE
T ss_pred HHHhCCEEEEECCCCCCCCCceee--hhhHhh---CCCeEEEEE
Confidence 578999999999976554322211 111222 358988874
No 300
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=27.59 E-value=1.1e+02 Score=20.49 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=29.6
Q ss_pred CCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 30 GAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
++|.+|++=|+.+.. ..+....+++.+.+. +.|+++|.-..|.
T Consensus 32 ~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~---~~pv~~v~GNHD~ 75 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAKSRDYAAFFRILSEA---HLPTAYVPGPQDA 75 (228)
T ss_dssp TCSEEEEESCSSCTTCCHHHHHHHHHHHGGG---CSCEEEECCTTSC
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEECCCCCc
Confidence 789999999987654 444444555655442 3688888666775
No 301
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=27.54 E-value=78 Score=19.76 Aligned_cols=40 Identities=8% Similarity=0.039 Sum_probs=24.4
Q ss_pred hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEE
Q 031249 26 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV 69 (163)
Q Consensus 26 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv 69 (163)
.-++.+|++|++.......+-- +. .++......++|++.|
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~w-v~---~EI~~A~~~gkpIigV 73 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDE-IL---GAVDLARKSSKPIITV 73 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHH-HH---HHHHHHTTTTCCEEEE
T ss_pred CccccCCEEEEEeCCCcCCChH-HH---HHHHHHHHcCCCEEEE
Confidence 4578899999998865433221 11 2233334467898877
No 302
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=27.34 E-value=1.2e+02 Score=21.13 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=21.1
Q ss_pred ccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249 14 QAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN 71 (163)
Q Consensus 14 t~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n 71 (163)
|++.++...+....++ +-+|++...-+....+.+...+..+.... +..+++|.+|
T Consensus 29 ~~~~~~~~d~~~~l~~--~rii~l~g~I~~~~a~~i~~~L~~l~~~~-~~k~I~l~In 83 (218)
T 1y7o_A 29 TSRGERSYDIYSRLLK--DRIIMLTGPVEDNMANSVIAQLLFLDAQD-STKDIYLYVN 83 (218)
T ss_dssp ------CEEHHHHHHH--TTEEEEESCBCHHHHHHHHHHHHHHHHHC-TTSCEEEEEE
T ss_pred CCCCcchhhHHHHhhc--CCEEEEeCEECHHHHHHHHHHHHHHHhcC-CCCCEEEEEE
Confidence 4444444444444443 22444444444444444444444443322 2345555543
No 303
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=27.23 E-value=1.9e+02 Score=24.44 Aligned_cols=80 Identities=9% Similarity=0.078 Sum_probs=48.6
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 031249 29 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 108 (163)
Q Consensus 29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (163)
.++|++.+..- +..+...+...++.+++....++++++.|.-.. + -..++++.|...+.. .+.++
T Consensus 646 ~~adiVglSsl--~~~~~~~~~~vi~~L~~~G~~~i~VivGG~~p~---------~-d~~~l~~~GaD~~f~---~gt~~ 710 (727)
T 1req_A 646 ADVHVVGVSSL--AGGHLTLVPALRKELDKLGRPDILITVGGVIPE---------Q-DFDELRKDGAVEIYT---PGTVI 710 (727)
T ss_dssp TTCSEEEEEEC--SSCHHHHHHHHHHHHHHTTCTTSEEEEEESCCG---------G-GHHHHHHTTEEEEEC---TTCCH
T ss_pred cCCCEEEEeee--cHhHHHHHHHHHHHHHhcCCCCCEEEEcCCCcc---------c-cHHHHHhCCCCEEEc---CCccH
Confidence 36776666554 334456677788888776544566665551111 1 123456788875543 34578
Q ss_pred HHHHHHHHHHHHHHH
Q 031249 109 EEAFIKTAAKILQNI 123 (163)
Q Consensus 109 ~~lf~~l~~~~~~~~ 123 (163)
.++...+.+.+..++
T Consensus 711 ~e~a~~l~~~l~~~~ 725 (727)
T 1req_A 711 PESAISLVKKLRASL 725 (727)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888876554
No 304
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=27.06 E-value=1.1e+02 Score=21.25 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=33.0
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEee
Q 031249 29 RGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGN 71 (163)
Q Consensus 29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~n 71 (163)
.++|++.+.++.....+...+..+++.+++... .++|+++.|.
T Consensus 142 ~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 142 HKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp TTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESS
T ss_pred cCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 468888888888888888888899999988643 2577776664
No 305
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=26.87 E-value=1.9e+02 Score=21.73 Aligned_cols=42 Identities=5% Similarity=-0.145 Sum_probs=31.2
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
.++.+++|.... ..+..++...++.+.... -...-+|.|+..
T Consensus 234 ~~~~~vlV~~pe-~~si~ea~r~~~~L~~~g--~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISE-FLSLYETERLIQELISYD--MDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESS-HHHHHHHHHHHHHHHHTT--CCEEEEEEEEEC
T ss_pred CCcEEEEEeCCC-cchHHHHHHHHHHHHHcC--CCCCEEEEecCC
Confidence 689999999855 667788888888887643 123457799987
No 306
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=26.37 E-value=1.4e+02 Score=22.27 Aligned_cols=68 Identities=13% Similarity=0.026 Sum_probs=39.7
Q ss_pred hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEE
Q 031249 27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL 98 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~ 98 (163)
.+..+|+++|+.......-...+..++..+......++++.++++-- . ..-........+...|+.++
T Consensus 299 ~~~~~d~ii~g~p~y~~~~~~~~~~~l~~l~~~~~~~k~~~~~~s~g-~---~~~a~~~l~~~l~~~g~~~~ 366 (398)
T 1ycg_A 299 EILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYG-W---GGGAQKILEERLKAAKIELI 366 (398)
T ss_dssp HHHHCSEEEEECCCBTTBCCGGGHHHHHHHHHHCCSSCEEEEEEEES-S---SCCHHHHHHHHHHHTTCEES
T ss_pred HHHHCCEEEEECCccCccchHHHHHHHHHHhccccCCCEEEEEEeCC-C---chHHHHHHHHHHHHCCeEEe
Confidence 35678999999754332211234455555544333568888888732 1 12235667777777777643
No 307
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=26.30 E-value=1.6e+02 Score=20.58 Aligned_cols=41 Identities=7% Similarity=0.065 Sum_probs=22.6
Q ss_pred hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
.-+++|++|+.-. +.... ...++.+.+. ++|+|++....+.
T Consensus 61 ~~~~vdgiI~~~~--~~~~~---~~~~~~~~~~---~iPvV~~~~~~~~ 101 (293)
T 3l6u_A 61 VHLKVDAIFITTL--DDVYI---GSAIEEAKKA---GIPVFAIDRMIRS 101 (293)
T ss_dssp HHTTCSEEEEECS--CTTTT---HHHHHHHHHT---TCCEEEESSCCCC
T ss_pred HHcCCCEEEEecC--ChHHH---HHHHHHHHHc---CCCEEEecCCCCC
Confidence 3457899887532 22111 1233444443 5898888766553
No 308
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=26.12 E-value=68 Score=24.19 Aligned_cols=68 Identities=10% Similarity=-0.006 Sum_probs=40.2
Q ss_pred hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEE
Q 031249 27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL 98 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~ 98 (163)
-+..+|++||+.-.-...-...+..++..+..... .++|+.++++- +-.. -.......++...|+.++
T Consensus 304 ~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~~~~~-g~~~---~a~~~l~~~l~~~g~~~~ 374 (404)
T 2ohh_A 304 DILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVFGSM-GGNG---GATGTMKELLAEAGFDVA 374 (404)
T ss_dssp HHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGGTCCEEEEEEEEE-SSSC---CHHHHHHHHHHHTTEEEE
T ss_pred HHHHCCEEEEECccccccchHHHHHHHHHhhhccccccCCCEEEEEEec-CCCC---hhHHHHHHHHHHCCCEEE
Confidence 46789999999764332222234555555544332 46888888773 2221 134567777777787643
No 309
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=26.09 E-value=1e+02 Score=19.35 Aligned_cols=68 Identities=10% Similarity=-0.023 Sum_probs=36.8
Q ss_pred ccC-CcEEEEEEECC-ChH--HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC-CCCccCHHHHHHHHHHcCCe
Q 031249 28 YRG-AAGALLVYDIT-RRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCDLA-HRRAVSKEEGEQFAKENGLL 96 (163)
Q Consensus 28 ~~~-ad~~i~v~d~~-~~~--s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~-~~~~v~~~~~~~~~~~~~~~ 96 (163)
+.. +|.+||++... ... --..+..+++.+......++++.++++ -|.. .............+...|..
T Consensus 45 l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~~~l~~k~~~v~~~-g~~~~~~~~~a~~~l~~~l~~~g~~ 117 (147)
T 1f4p_A 45 LFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGC-GDSSWEYFCGAVDAIEEKLKNLGAE 117 (147)
T ss_dssp TTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGGSCCTTCEEEEEEE-ECTTSSSTTHHHHHHHHHHHHTTCE
T ss_pred hcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHhcccCCCEEEEEee-cCCChHHHHHHHHHHHHHHHHcCCe
Confidence 566 89999987544 111 111334455544332335688888888 2221 11122345566677777765
No 310
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=26.03 E-value=1.4e+02 Score=19.41 Aligned_cols=66 Identities=8% Similarity=-0.026 Sum_probs=43.0
Q ss_pred hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEE
Q 031249 27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL 98 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~ 98 (163)
-+..+|++||........ +. ...++..+......++++.++++- +... -...+....+...|+.++
T Consensus 53 ~~~~~d~ii~Gspty~g~-~p-~~~~l~~l~~~~~~~k~va~fgs~-g~~~---~a~~~l~~~l~~~G~~~v 118 (159)
T 3fni_A 53 LVGRCTGLVIGMSPAASA-AS-IQGALSTILGSVNEKQAVGIFETG-GGDD---EPIDPLLSKFRNLGLTTA 118 (159)
T ss_dssp HHHTEEEEEEECCBTTSH-HH-HHHHHHHHHHHCCTTSEEEEECCS-SSCB---CCHHHHHHHHHHTTCEES
T ss_pred HHHhCCEEEEEcCcCCCC-cc-HHHHHHHHHhhcccCCEEEEEEcC-CCCc---HHHHHHHHHHHHCCCEEe
Confidence 345689999887665533 33 355666776655567899999874 3221 245777778888887743
No 311
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=25.76 E-value=30 Score=23.49 Aligned_cols=71 Identities=8% Similarity=-0.025 Sum_probs=37.6
Q ss_pred hhccCCcEEEEEEECCChHHHHHHHHHHHHHHH----hcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe
Q 031249 26 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQ----HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 96 (163)
Q Consensus 26 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~----~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~ 96 (163)
..+..+|++||..-.-...--..+..++..+.. ....++|+.++++--......+-.......++...++.
T Consensus 50 ~~l~~~D~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~ 124 (193)
T 3d7n_A 50 AALDAADAIIFGTPTYMGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGL 124 (193)
T ss_dssp HHHHHCSEEEEEEEEETTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHCCEEEEEeCccCCCccHHHHHHHHHhhhhccccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCE
Confidence 456789999998765432222234445544431 11246888888775332111112334455566666655
No 312
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=25.68 E-value=43 Score=22.25 Aligned_cols=70 Identities=10% Similarity=-0.034 Sum_probs=37.3
Q ss_pred hccCCcEEEEEEEC-CChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC---CCCccCHHHHHHHHHHcCCeE
Q 031249 27 YYRGAAGALLVYDI-TRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA---HRRAVSKEEGEQFAKENGLLF 97 (163)
Q Consensus 27 ~~~~ad~~i~v~d~-~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~---~~~~v~~~~~~~~~~~~~~~~ 97 (163)
-+.+.|.+||.+.. .....-..+..+++.+......++++.++++- |.. +.-.-........+...|..+
T Consensus 42 ~l~~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~~~l~gk~vavfg~g-~~~~~~~~f~~a~~~l~~~l~~~G~~~ 115 (175)
T 1ag9_A 42 DLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCG-DQEDYAEYFCDALGTIRDIIEPRGATI 115 (175)
T ss_dssp HHHTCSEEEEECCEETTTEECHHHHHHHHHHTTCCCTTCEEEEEEEC-CTTTTTTSTTHHHHHHHHHHTTTTCEE
T ss_pred HhhhCCEEEEEEeecCCCcChHHHHHHHhhhhhcccCCCEEEEEEEC-CCcchhHHHHHHHHHHHHHHHHCCCEE
Confidence 35578999998765 23222223445555554333356888888873 221 111122345555666566653
No 313
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=24.55 E-value=1.1e+02 Score=18.18 Aligned_cols=15 Identities=20% Similarity=0.100 Sum_probs=10.8
Q ss_pred EEEEEEECCChHHHH
Q 031249 33 GALLVYDITRRETFN 47 (163)
Q Consensus 33 ~~i~v~d~~~~~s~~ 47 (163)
-++++||+++.....
T Consensus 5 ~~lV~YDI~~~kr~~ 19 (90)
T 1zpw_X 5 LYAVAYDIPDDTRRV 19 (90)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred EEEEEEeCCChHHHH
Confidence 488999998864333
No 314
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=24.05 E-value=1.9e+02 Score=23.26 Aligned_cols=62 Identities=11% Similarity=-0.046 Sum_probs=36.1
Q ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcC
Q 031249 31 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA 102 (163)
Q Consensus 31 ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 102 (163)
-+-++||.|.+..+. .....+.+.+.. + .-.+|+||.|-.. . .-.+..++..+++++.++..
T Consensus 412 P~evLLvLDattGq~---al~~ak~f~~~~--~-itgvIlTKLD~ta--k--gG~~lsi~~~~~~PI~fig~ 473 (503)
T 2yhs_A 412 PHEVMLTIDASTGQN---AVSQAKLFHEAV--G-LTGITLTKLDGTA--K--GGVIFSVADQFGIPIRYIGV 473 (503)
T ss_dssp SSEEEEEEEGGGTHH---HHHHHHHHHHHT--C-CSEEEEECGGGCS--C--CTHHHHHHHHHCCCEEEEEC
T ss_pred CCeeEEEecCcccHH---HHHHHHHHHhhc--C-CCEEEEEcCCCcc--c--ccHHHHHHHHHCCCEEEEec
Confidence 567899999765432 223344444432 1 2357899998522 1 23455667777888766543
No 315
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=23.88 E-value=18 Score=26.12 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=20.3
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 72 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK 72 (163)
-..|+|+||+.......+. +++.......+.-+++|+.-
T Consensus 102 viggII~~f~~p~~~~~~~----i~~~~~~~~~dg~~v~Vg~~ 140 (233)
T 3uc9_A 102 VMAGIILITDIRQTKPQEL----LHQFMIAAHRNTFVVLVNVN 140 (233)
T ss_dssp TEEEEEEEECHHHHCGGGT----HHHHHHHSCTTCEEEEEECC
T ss_pred hcceEEEEEeCCCcchHHH----HHHHhccCCCCceEEEEecC
Confidence 3478999997654433332 33333333334455555543
No 316
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=23.47 E-value=52 Score=21.46 Aligned_cols=71 Identities=6% Similarity=-0.120 Sum_probs=39.1
Q ss_pred hccCCcEEEEEEECCC-hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC-CC-CCccCHHHHHHHHHHcCCeE
Q 031249 27 YYRGAAGALLVYDITR-RETFNHLSSWLEDARQHANPNMSIMLVGNKCDL-AH-RRAVSKEEGEQFAKENGLLF 97 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~-~~-~~~v~~~~~~~~~~~~~~~~ 97 (163)
-+...|.+||++..-. ...-..+..+++.+......++++.++++---. .. .-.-...+....+...|..+
T Consensus 43 ~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~ 116 (169)
T 1obo_A 43 DLNDYQYLIIGCPTLNIGELQSDWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKT 116 (169)
T ss_dssp GGGGCSEEEEEEEEETTTEECHHHHHHHTTGGGCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEE
T ss_pred HHhhCCEEEEEEeeCCCCcCCHHHHHHHHHhhhcCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEE
Confidence 4567899999987632 222122334554444323356889888884211 11 11223456667777777653
No 317
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=23.40 E-value=1.1e+02 Score=20.34 Aligned_cols=45 Identities=7% Similarity=0.029 Sum_probs=29.3
Q ss_pred hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
.+...|.++|.+-.-...-...+..+++.+ ...+++++++++--.
T Consensus 84 ~l~~yD~iilg~Pvy~g~~~~~~~~fl~~~---~l~gk~v~~f~t~g~ 128 (171)
T 4ici_A 84 NIGTYDVVFIGYPIWWDLAPRIINTFIEGH---SLKGKTVVPFATSGG 128 (171)
T ss_dssp TGGGCSEEEEEEECBTTBCCHHHHHHHHHS---CCTTSEEEEEEECSS
T ss_pred cHhHCCEEEEecccccCCchHHHHHHHHHc---CCCcCEEEEEEecCC
Confidence 466889999999875433233444555544 235688998888653
No 318
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=22.98 E-value=2e+02 Score=20.06 Aligned_cols=40 Identities=10% Similarity=0.271 Sum_probs=23.0
Q ss_pred hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
.-+++|++|+. ..+... ....++.+.+. ++|+|++....+
T Consensus 58 ~~~~vdgiIi~--~~~~~~---~~~~~~~~~~~---~iPvV~~~~~~~ 97 (291)
T 3l49_A 58 IAQKPDAIIEQ--LGNLDV---LNPWLQKINDA---GIPLFTVDTATP 97 (291)
T ss_dssp HHHCCSEEEEE--SSCHHH---HHHHHHHHHHT---TCCEEEESCCCT
T ss_pred HHcCCCEEEEe--CCChhh---hHHHHHHHHHC---CCcEEEecCCCC
Confidence 34678998865 333222 22344555443 589988876543
No 319
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=22.84 E-value=71 Score=23.09 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=31.6
Q ss_pred hccCCcEEEEEEECCChHHHHHHHHHHHHHHHh-------------cCCCCeEEEEeeCC
Q 031249 27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQH-------------ANPNMSIMLVGNKC 73 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~-------------~~~~~p~ilv~nK~ 73 (163)
.+..||++||.+-+-...--..+..|+..+... ...+++++++.+--
T Consensus 90 ~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~G 149 (273)
T 1d4a_A 90 KLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTG 149 (273)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECS
T ss_pred HHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCC
Confidence 378899999999876543334566788877432 11467888887643
No 320
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=22.62 E-value=58 Score=19.23 Aligned_cols=42 Identities=17% Similarity=0.400 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe
Q 031249 47 NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 96 (163)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~ 96 (163)
..+..+++++++.. .++.++++.. .| .....+..+++...+.
T Consensus 36 delkkyleefrkes-qnikvlilvs-nd------eeldkakelaqkmeid 77 (110)
T 2kpo_A 36 DELKKYLEEFRKES-QNIKVLILVS-ND------EELDKAKELAQKMEID 77 (110)
T ss_dssp HHHHHHHHHHTSST-TSEEEEEEES-SH------HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhc-cCeEEEEEEc-Ch------HHHHHHHHHHHhhcee
Confidence 34556666665543 3444433321 11 1134455566655554
No 321
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=22.50 E-value=3.4e+02 Score=23.18 Aligned_cols=82 Identities=10% Similarity=0.092 Sum_probs=48.7
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 031249 29 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 108 (163)
Q Consensus 29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (163)
.++|++.+.-- +......+...++.+++....++++++.|..- .. -..++++.|+.-+.. .+.++
T Consensus 654 ~~adiVglSsl--~~~~~~~~~~vi~~Lr~~G~~dv~VivGG~~P---------~~-d~~~l~~~GaD~~f~---pgtd~ 718 (762)
T 2xij_A 654 ADVHAVGVSTL--AAGHKTLVPELIKELNSLGRPDILVMCGGVIP---------PQ-DYEFLFEVGVSNVFG---PGTRI 718 (762)
T ss_dssp TTCSEEEEEEC--SSCHHHHHHHHHHHHHHTTCTTSEEEEEESCC---------GG-GHHHHHHHTCCEEEC---TTCCH
T ss_pred cCCCEEEEeee--cHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCC---------cc-cHHHHHhCCCCEEeC---CCCCH
Confidence 36776666543 33445567778888877654456666555111 11 112456778874432 24478
Q ss_pred HHHHHHHHHHHHHHHhh
Q 031249 109 EEAFIKTAAKILQNIQE 125 (163)
Q Consensus 109 ~~lf~~l~~~~~~~~~~ 125 (163)
.++...+.+.+..++..
T Consensus 719 ~e~~~~i~~~l~~~~~~ 735 (762)
T 2xij_A 719 PKAAVQVLDDIEKCLEK 735 (762)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 88888888877666553
No 322
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=22.03 E-value=2.4e+02 Score=20.76 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=39.2
Q ss_pred hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEE-EEeeCCCCCCCCccCHHHHHHHHHHcCCeEE
Q 031249 27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIM-LVGNKCDLAHRRAVSKEEGEQFAKENGLLFL 98 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~i-lv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~ 98 (163)
.+..||.+|++.... ..++..+...++.+..... .+.++. +|.|+.+. ..++.+++++++.+++
T Consensus 183 al~aAd~viIvt~~e-~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~-------~~~v~~~a~~~~~~~l 248 (314)
T 3fwy_A 183 PLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA-------TDEVDRFCKETNFRRL 248 (314)
T ss_dssp GGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC-------CHHHHHHHHHHTCCEE
T ss_pred HHhhCCeEEEEeCCc-HHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCc-------hhHHHHHHHHhCCeEE
Confidence 456799999998754 5667777666666654332 234442 56676553 2345567777776643
No 323
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=22.03 E-value=1.4e+02 Score=21.12 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=22.1
Q ss_pred ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 28 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 28 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
-+++||+|++-...+. ..++.+.+ .++|+|++....+.
T Consensus 66 ~~~vdGiI~~~~~~~~-------~~~~~l~~---~~iPvV~i~~~~~~ 103 (295)
T 3hcw_A 66 QRMVDAFILLYSKEND-------PIKQMLID---ESMPFIVIGKPTSD 103 (295)
T ss_dssp TTCCSEEEESCCCTTC-------HHHHHHHH---TTCCEEEESCCCSS
T ss_pred hCCcCEEEEcCcccCh-------HHHHHHHh---CCCCEEEECCCCcc
Confidence 3689999986422211 12333433 35899998776543
No 324
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=21.89 E-value=1.4e+02 Score=17.83 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=9.9
Q ss_pred cEEEEEEECCChH
Q 031249 32 AGALLVYDITRRE 44 (163)
Q Consensus 32 d~~i~v~d~~~~~ 44 (163)
.-+|++||+.+..
T Consensus 4 M~vlV~YDI~~~k 16 (91)
T 3exc_X 4 MKLLVVYDVSDDS 16 (91)
T ss_dssp CEEEEEEECCSHH
T ss_pred eEEEEEEeCCCch
Confidence 3578999998764
No 325
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=21.72 E-value=2e+02 Score=20.15 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=21.1
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 29 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
+++||+|++- ..... ..++.+.+ .++|+|++....+
T Consensus 65 ~~vdgiIi~~-~~~~~------~~~~~l~~---~~iPvV~i~~~~~ 100 (288)
T 3gv0_A 65 GSADGVIISK-IEPND------PRVRFMTE---RNMPFVTHGRSDM 100 (288)
T ss_dssp TCCSEEEEES-CCTTC------HHHHHHHH---TTCCEEEESCCCS
T ss_pred CCccEEEEec-CCCCc------HHHHHHhh---CCCCEEEECCcCC
Confidence 6899999763 22111 12334444 3589998877654
No 326
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=21.23 E-value=84 Score=23.73 Aligned_cols=47 Identities=9% Similarity=-0.056 Sum_probs=26.5
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDAR 57 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~ 57 (163)
.+.|+| ||.. ........+..+|.+|+|...+ ..+...+..++..+.
T Consensus 261 D~VIID--~p~~--~~~~~~~~l~~aD~vivv~~~~-~~s~~~l~~~~~~l~ 307 (373)
T 3fkq_A 261 DEIIVD--LPFS--LEIEKLKLLSKAWRIIVVNDGS-QLSNYKFMRAYESVV 307 (373)
T ss_dssp SEEEEE--CCCC--CCHHHHHHHTTCSEEEEEECCC-HHHHHHHHHHHHHHH
T ss_pred CEEEEe--CCCC--CCHHHHHHHHHCCEEEEEecCC-chHHHHHHHHHHHHH
Confidence 455566 6532 2223455678899999998755 444334444444443
No 327
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=21.04 E-value=1.2e+02 Score=21.16 Aligned_cols=44 Identities=2% Similarity=0.029 Sum_probs=22.9
Q ss_pred hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
.-+++|++|++-.... ........++.+.+. ++|+|++....+.
T Consensus 68 ~~~~vdgiIi~~~~~~--~~~~~~~~~~~~~~~---~iPvV~~~~~~~~ 111 (298)
T 3tb6_A 68 LSQHIDGLIVEPTKSA--LQTPNIGYYLNLEKN---GIPFAMINASYAE 111 (298)
T ss_dssp HHTCCSEEEECCSSTT--SCCTTHHHHHHHHHT---TCCEEEESSCCTT
T ss_pred HHCCCCEEEEeccccc--ccCCcHHHHHHHHhc---CCCEEEEecCcCC
Confidence 3468899987542111 000111233444443 5899988776543
No 328
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=21.03 E-value=1.8e+02 Score=18.93 Aligned_cols=70 Identities=10% Similarity=0.024 Sum_probs=39.1
Q ss_pred ccCCcEEEEEEECCC-hHH----HHHHHHHH-HHHHHhcCCCCeEEEEeeCCCCC---CCCccCHHHHHHHHHHcCCeEE
Q 031249 28 YRGAAGALLVYDITR-RET----FNHLSSWL-EDARQHANPNMSIMLVGNKCDLA---HRRAVSKEEGEQFAKENGLLFL 98 (163)
Q Consensus 28 ~~~ad~~i~v~d~~~-~~s----~~~~~~~~-~~l~~~~~~~~p~ilv~nK~D~~---~~~~v~~~~~~~~~~~~~~~~~ 98 (163)
+...|.+||.+..-. ..- -..+..++ +.+......++++.++++- |.. +.-.-........+...|..++
T Consensus 43 l~~~d~ii~g~pt~~~G~~~~~~p~~~~~fl~~~l~~~~l~gk~~avfg~g-~~~~y~~~f~~a~~~l~~~l~~~G~~~~ 121 (173)
T 2fcr_A 43 LKDYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLPEVDMKDLPVAIFGLG-DAEGYPDNFCDAIEEIHDCFAKQGAKPV 121 (173)
T ss_dssp GGGCSEEEEEEECCSTTCSSCCSCSTHHHHHHHTGGGCCCTTCEEEEEEEE-CTTTCTTSTTTHHHHHHHHHHHTTCEEE
T ss_pred HccCCEEEEEEeecCCCCcCccCcHHHHHHHHhhccccccCCCEEEEEEEC-CCchhhHHHHHHHHHHHHHHHHCCCEEE
Confidence 556899999987744 221 13344555 5443333356888888872 211 1111234666677777776643
No 329
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=20.86 E-value=71 Score=21.90 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=31.8
Q ss_pred hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh---------cCCCCeEEEEeeC
Q 031249 25 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH---------ANPNMSIMLVGNK 72 (163)
Q Consensus 25 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~---------~~~~~p~ilv~nK 72 (163)
...+..||++||.+-+-...--..+..|+..+... .-.+++++++.+-
T Consensus 53 ~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~ 109 (192)
T 3f2v_A 53 QKLIETHDSLVWQFPIYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSL 109 (192)
T ss_dssp HHHHHTSSSEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEE
T ss_pred HHHHHhCCEEEEEcChhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeC
Confidence 34678999999999876543334566788877431 1145788877664
No 330
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=20.51 E-value=1.6e+02 Score=19.99 Aligned_cols=50 Identities=4% Similarity=-0.094 Sum_probs=29.5
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHH
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA 56 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l 56 (163)
+..+.+.|++- ..... .....+..||++||++-+-...--..+..|+..+
T Consensus 47 g~~v~~~dL~~--~~d~~-~~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv 96 (204)
T 2amj_A 47 GHDVRIVRADS--DYDVK-AEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDV 96 (204)
T ss_dssp TCEEEEEESSS--CCCHH-HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred CCEEEEEeCCc--cccHH-HHHHHHHhCCEEEEECCccccCCCHHHHHHHHHH
Confidence 34667777532 11222 2344678899999999876533333455666665
No 331
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=20.38 E-value=2.5e+02 Score=20.32 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=25.5
Q ss_pred hchhhhcc---CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 22 SITRSYYR---GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 22 ~~~~~~~~---~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
..+...+. ++|++|++- ... .....++.+. ..++|+|++.+..+.
T Consensus 51 ~~i~~~i~~~~~vDgiIi~~--~~~----~~~~~~~~~~---~~giPvV~~~~~~~~ 98 (350)
T 3h75_A 51 QQARELFQGRDKPDYLMLVN--EQY----VAPQILRLSQ---GSGIKLFIVNSPLTL 98 (350)
T ss_dssp HHHHHHHHSSSCCSEEEEEC--CSS----HHHHHHHHHT---TSCCEEEEEESCCCT
T ss_pred HHHHHHHhcCCCCCEEEEeC--chh----hHHHHHHHHH---hCCCcEEEEcCCCCh
Confidence 34444444 899999863 221 1122333333 246999998877654
No 332
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=20.03 E-value=1.8e+02 Score=20.61 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=23.2
Q ss_pred hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
.-+++|++|++-. +... +...++.+.+ .++|+|++.+..+.
T Consensus 55 ~~~~vdgiIi~~~--~~~~---~~~~~~~~~~---~~iPvV~~~~~~~~ 95 (313)
T 3m9w_A 55 INRGVDVLVIIPY--NGQV---LSNVVKEAKQ---EGIKVLAYDRMIND 95 (313)
T ss_dssp HHTTCSEEEEECS--STTS---CHHHHHHHHT---TTCEEEEESSCCTT
T ss_pred HHcCCCEEEEeCC--Chhh---hHHHHHHHHH---CCCeEEEECCcCCC
Confidence 3467899987643 2211 1123344433 35899998876653
Done!