BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031251
(163 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60613|SEP15_HUMAN 15 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3
Length = 162
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 10 VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTED 69
+L ++ AV+ E S+ C +LGF+ LCS C+ ++ Q L DC CC E+
Sbjct: 17 LLLATVLQAVSAFGAE-FSSEACRELGFSSNLLCSSCDLLGQFNLLQ-LDPDCRGCCQEE 74
Query: 70 SDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDE 128
+ K+ Y+GAILE C KL +P++ F+ +K K F ++++YV S P L +LD+
Sbjct: 75 AQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDD 133
Query: 129 EGQHKETIRIDNWKREHMLQFLQEKVK 155
G E + I W + + +FL EK++
Sbjct: 134 NGNIAEELSILKWNTDSVEEFLSEKLE 160
>sp|A8YXY3|SEP15_BOVIN 15 kDa selenoprotein OS=Bos taurus GN=SEP15 PE=2 SV=2
Length = 162
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 10 VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTED 69
+L ++ V+ E S+ C +LGF+ LCS C+ ++ Q L DC CC E+
Sbjct: 17 LLLATVLQTVSALGAE-FSSESCRELGFSSNLLCSSCDLLGQFNLLQ-LDPDCRGCCQEE 74
Query: 70 SDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDE 128
+ K+ Y+GAILE C KL +P++ F+ +K K F ++++YV S P L +LD+
Sbjct: 75 AQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDD 133
Query: 129 EGQHKETIRIDNWKREHMLQFLQEKVK 155
G E + I W + + +FL EK++
Sbjct: 134 SGNIAEELSILKWNTDSVEEFLSEKLE 160
>sp|A1Z623|SEP15_PIG 15 kDa selenoprotein OS=Sus scrofa GN=SEP15 PE=2 SV=2
Length = 162
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 82/148 (55%), Gaps = 5/148 (3%)
Query: 11 LFIVIISAVAVTS--KEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTE 68
L +++ +A+ + S + S+ C +LGF+ LC C+ ++ Q L DC CC E
Sbjct: 15 LRLLLATALQMVSAFGAEFSSESCRELGFSSNLLCGSCDLLGQFDLLQ-LDPDCRGCCQE 73
Query: 69 DSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLD 127
++ K+ Y+GAILE C KL +P++ F+ +K K F ++++YV S P L +LD
Sbjct: 74 EAQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLD 132
Query: 128 EEGQHKETIRIDNWKREHMLQFLQEKVK 155
+ G E + I W + + +FL EK++
Sbjct: 133 DNGNIAEELSILKWNTDSVEEFLSEKLQ 160
>sp|Q802F3|SEP15_DANRE 15 kDa selenoprotein OS=Danio rerio GN=sep15 PE=2 SV=2
Length = 153
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 3/131 (2%)
Query: 26 QLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILE 85
+LS+ C +LGF+ LCS C ++ +Q L C +CC E++ K+ Y GAILE
Sbjct: 23 ELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILE 80
Query: 86 ACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKRE 144
C KL +P++ F+ +K K F ++++YV S P L +LD+ G E + I W +
Sbjct: 81 VCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 140
Query: 145 HMLQFLQEKVK 155
+ +FL EK++
Sbjct: 141 SVEEFLSEKLE 151
>sp|Q923V8|SEP15_RAT 15 kDa selenoprotein OS=Rattus norvegicus GN=Sep15 PE=1 SV=3
Length = 162
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 10 VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTED 69
+L AV+ E S+ C +LGF+ LCS C+ ++ L C CC E+
Sbjct: 17 LLLATAFQAVSALGAE-FSSEACRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCCQEE 74
Query: 70 SDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDE 128
+ K+ Y+GAILE C KL +P++ F+ +K K F ++++YV S P L +LD+
Sbjct: 75 AQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDD 133
Query: 129 EGQHKETIRIDNWKREHMLQFLQEKVK 155
G E + I W + + +FL EK++
Sbjct: 134 NGNIAEELSILKWNTDSVEEFLSEKLE 160
>sp|Q9ERR7|SEP15_MOUSE 15 kDa selenoprotein OS=Mus musculus GN=Sep15 PE=1 SV=3
Length = 162
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 10 VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTED 69
+L AV+ E ++ C +LGF+ LCS C+ ++ L C CC E+
Sbjct: 17 LLLATAFQAVSALGAE-FASEACRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCCQEE 74
Query: 70 SDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDE 128
+ K+ Y+GAILE C KL +P++ F+ +K K F ++++YV S P L +LD+
Sbjct: 75 AQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDD 133
Query: 129 EGQHKETIRIDNWKREHMLQFLQEKVK 155
G E + I W + + +FL EK++
Sbjct: 134 NGNIAEELSILKWNTDSVEEFLSEKLE 160
>sp|Q6X4M2|SEP15_ONCMY 15 kDa selenoprotein OS=Oncorhynchus mykiss GN=sep15 PE=2 SV=2
Length = 157
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Query: 10 VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTED 69
+L+++ + LS+ C +LGF+ CS C+ E+ + C +CC ++
Sbjct: 7 ILWLLSLIQTLSAYGADLSSEACRELGFSSCWGCSSCDLLGEFSLSS-IQPVCKQCCQQE 65
Query: 70 SDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDE 128
K+ Y GAILE C KL +P++ F+ +K K F ++++YV + P L +LD+
Sbjct: 66 VHMESRKL-YPGAILEVCGUKLGRFPQVQAFVRSDKPKMFKGLQIKYVRGADPILKLLDD 124
Query: 129 EGQHKETIRIDNWKREHMLQFLQEKVK 155
G E I W + + +FL EK++
Sbjct: 125 NGNIAEEPSILKWNTDSVEEFLSEKLE 151
>sp|G4WAW9|SELM_ERISI Selenoprotein M OS=Eriocheir sinensis GN=SelM PE=2 SV=1
Length = 129
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 82 AILEACM-RKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDN 140
A +E+C +L YP FI+E+ F + Q++ + P+L++L+++ Q E +
Sbjct: 30 ARVESCSGUQLNRYPGAKQFIQEDLPLFHNTKFQHIGGAAPELLLLNKQDQELERFDLKK 89
Query: 141 WKREHMLQFL 150
RE + + +
Sbjct: 90 LSREEINELM 99
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,233,506
Number of Sequences: 539616
Number of extensions: 2220573
Number of successful extensions: 4856
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4830
Number of HSP's gapped (non-prelim): 14
length of query: 163
length of database: 191,569,459
effective HSP length: 108
effective length of query: 55
effective length of database: 133,290,931
effective search space: 7331001205
effective search space used: 7331001205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)