BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031254
         (163 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B7UVA7|GPDA_PSEA8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Pseudomonas
           aeruginosa (strain LESB58) GN=gpsA PE=3 SV=1
          Length = 340

 Score = 32.0 bits (71), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 14/81 (17%)

Query: 73  DVIVECRGHDAARFNNINHAHG----WEKDVSGMVEQEQEKNKIAVSFECETLKAEKVAE 128
           D+IV C     +R   + HA G     E+ VS M E  +  N         TLK  K   
Sbjct: 244 DLIVTC-SSPKSRNYQVGHALGEGLSLEEAVSRMGETAEGVN---------TLKVLKEKS 293

Query: 129 DHIKQYMPKLAGLDAVVNIGK 149
           D ++ YMP +AGL A++  G+
Sbjct: 294 DEMQVYMPLVAGLHAILFEGR 314


>sp|Q9I3A8|GPDA_PSEAE Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Pseudomonas
           aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
           LMG 12228) GN=gpsA PE=3 SV=1
          Length = 340

 Score = 32.0 bits (71), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 14/81 (17%)

Query: 73  DVIVECRGHDAARFNNINHAHG----WEKDVSGMVEQEQEKNKIAVSFECETLKAEKVAE 128
           D+IV C     +R   + HA G     E+ VS M E  +  N         TLK  K   
Sbjct: 244 DLIVTC-SSPKSRNYQVGHALGEGLSLEEAVSRMGETAEGVN---------TLKVLKEKS 293

Query: 129 DHIKQYMPKLAGLDAVVNIGK 149
           D ++ YMP +AGL A++  G+
Sbjct: 294 DEMQVYMPLVAGLHAILFEGR 314


>sp|Q02K99|GPDA_PSEAB Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Pseudomonas
           aeruginosa (strain UCBPP-PA14) GN=gpsA PE=3 SV=1
          Length = 340

 Score = 32.0 bits (71), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 14/81 (17%)

Query: 73  DVIVECRGHDAARFNNINHAHG----WEKDVSGMVEQEQEKNKIAVSFECETLKAEKVAE 128
           D+IV C     +R   + HA G     E+ VS M E  +  N         TLK  K   
Sbjct: 244 DLIVTC-SSPKSRNYQVGHALGEGLSLEEAVSRMGETAEGVN---------TLKVLKEKS 293

Query: 129 DHIKQYMPKLAGLDAVVNIGK 149
           D ++ YMP +AGL A++  G+
Sbjct: 294 DEMQVYMPLVAGLHAILFEGR 314


>sp|B1JAT7|GPDA_PSEPW Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Pseudomonas putida
           (strain W619) GN=gpsA PE=3 SV=1
          Length = 341

 Score = 32.0 bits (71), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 8/78 (10%)

Query: 73  DVIVECRGHDAARFNNINHAHGWEKDVSGMVEQEQEKNKIA-VSFECETLKAEKVAEDHI 131
           D+IV C     +R   + HA G    +      EQ  N++  V+    TLK  K   + +
Sbjct: 244 DLIVTCS-SPKSRNYQVGHALGQGLTL------EQAVNRLGEVAEGVNTLKVLKAKAEEV 296

Query: 132 KQYMPKLAGLDAVVNIGK 149
           + YMP +AGL A++  G+
Sbjct: 297 QVYMPLVAGLHAILFEGR 314


>sp|P0CK13|MVP_ZYMVC P3N-PIPO polyprotein OS=Zucchini yellow mosaic virus (strain
           California) PE=3 SV=2
          Length = 991

 Score = 31.2 bits (69), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 2   ERVKEEEVKEGVASIALLPNGSISGHFIQLPHSICYG 38
           ER++EE++K G +   L  N +++  + +LPH +  G
Sbjct: 252 ERIREEDIKPGCSGWVLGTNHTLTKRYSRLPHLVIRG 288


>sp|P18479|POLG_ZYMVC Genome polyprotein OS=Zucchini yellow mosaic virus (strain
           California) PE=1 SV=2
          Length = 3080

 Score = 30.8 bits (68), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 2   ERVKEEEVKEGVASIALLPNGSISGHFIQLPHSICYG 38
           ER++EE++K G +   L  N +++  + +LPH +  G
Sbjct: 252 ERIREEDIKPGCSGWVLGTNHTLTKRYSRLPHLVIRG 288


>sp|Q1I7N0|GPDA_PSEE4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Pseudomonas
           entomophila (strain L48) GN=gpsA PE=3 SV=1
          Length = 341

 Score = 30.4 bits (67), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 73  DVIVECRGHDAARFNNINHAHGWEKDVSGMVEQEQEKNKIAVSFECETLKAEKVAEDHIK 132
           D+IV C     +R   + HA G      G+  +E       V+    TLK  K     ++
Sbjct: 244 DLIVTCS-SPKSRNYQVGHALG-----QGLTLEEAVSRLGEVAEGVNTLKVLKAKAQEVQ 297

Query: 133 QYMPKLAGLDAVVNIGK 149
            YMP +AGL A++  G+
Sbjct: 298 VYMPLVAGLHAILFEGR 314


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.134    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,376,093
Number of Sequences: 539616
Number of extensions: 2494099
Number of successful extensions: 7164
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 7160
Number of HSP's gapped (non-prelim): 17
length of query: 163
length of database: 191,569,459
effective HSP length: 108
effective length of query: 55
effective length of database: 133,290,931
effective search space: 7331001205
effective search space used: 7331001205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)