Query 031254
Match_columns 163
No_of_seqs 20 out of 22
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 11:29:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04888 ACT_PheB-BS C-terminal 42.8 33 0.00072 22.0 2.9 35 110-148 39-73 (76)
2 COG0302 FolE GTP cyclohydrolas 39.0 18 0.0004 30.8 1.5 18 9-26 91-108 (195)
3 COG3554 Uncharacterized protei 27.0 1.4E+02 0.0031 25.6 4.9 60 24-86 31-90 (190)
4 PF01227 GTP_cyclohydroI: GTP 26.7 42 0.00091 27.7 1.7 17 10-26 78-94 (179)
5 cd00642 GTP_cyclohydro1 GTP cy 25.4 47 0.001 27.5 1.8 17 10-26 83-99 (185)
6 TIGR00063 folE GTP cyclohydrol 22.9 55 0.0012 27.0 1.7 17 10-26 78-94 (180)
7 KOG2743 Cobalamin synthesis pr 22.0 1.1E+02 0.0024 28.7 3.6 48 86-133 255-312 (391)
8 PF02120 Flg_hook: Flagellar h 19.6 1.5E+02 0.0032 19.9 3.1 46 106-153 32-77 (85)
9 PRK12606 GTP cyclohydrolase I; 18.9 69 0.0015 27.0 1.5 17 10-26 98-114 (201)
10 PRK12906 secA preprotein trans 18.8 1.4E+02 0.003 30.1 3.8 71 49-142 310-382 (796)
No 1
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.80 E-value=33 Score=22.04 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=28.2
Q ss_pred ceeeEEEEecccccchHHHHHHHhhcccccCcceEEeee
Q 031254 110 NKIAVSFECETLKAEKVAEDHIKQYMPKLAGLDAVVNIG 148 (163)
Q Consensus 110 ~~~~vsFeCETLkAd~AAe~hirkfmP~LaG~dAvvNvG 148 (163)
....++|.+++ +..+.||.+.|-+|.....|.+|-
T Consensus 39 ~~~~i~~~v~v----~~~~~~l~~l~~~L~~i~~V~~v~ 73 (76)
T cd04888 39 GRANVTISIDT----STMNGDIDELLEELREIDGVEKVE 73 (76)
T ss_pred CeEEEEEEEEc----CchHHHHHHHHHHHhcCCCeEEEE
Confidence 45678888877 455679999999999999998874
No 2
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=39.03 E-value=18 Score=30.82 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=15.8
Q ss_pred hhcceeeEEeecCcceee
Q 031254 9 VKEGVASIALLPNGSISG 26 (163)
Q Consensus 9 ~~eGvAsiAlLP~GsiSG 26 (163)
.+-|.|.+|.+|+|++.|
T Consensus 91 Pf~GkahVAYiP~gkV~G 108 (195)
T COG0302 91 PFFGKAHVAYIPDGKVIG 108 (195)
T ss_pred cccceEEEEEcCCCceec
Confidence 356999999999999988
No 3
>COG3554 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.03 E-value=1.4e+02 Score=25.58 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=38.5
Q ss_pred eeeeeeecCCceeeeeecceeccccccccccceeeEEEEEEecCCCceeEEEEEecCcccccc
Q 031254 24 ISGHFIQLPHSICYGLHGTELACERECSRGEDYRLIKLAIIDYNKKKEHDVIVECRGHDAARF 86 (163)
Q Consensus 24 iSGHfi~~pss~c~Gl~Gte~~ceRECsRgedyrLiklTi~df~~k~E~~~vvEc~G~DAaRl 86 (163)
.|||-|++++ +-+---|++...-=+=-++++||+-+.-+.-+-+.+ ....++.|++--+.
T Consensus 31 ~~g~~iRa~s-~v~~~~~~p~~~~Yrl~cDa~wr~r~f~vd~~~g~R--~l~l~~dg~g~W~~ 90 (190)
T COG3554 31 LSGKRIRANS-IVAERGATPFGARYRLQCDAGWRTRRFGVDVTLGER--QLALARDGDGHWLV 90 (190)
T ss_pred cccceeecce-eEEeccCCceeEEEEEEecCCccEEEEEEEEeeceE--EEEEEecCCCceEe
Confidence 7999999998 433333443322334456899999987666555554 56667777765554
No 4
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3.5.4.16 from EC) catalyses the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. The comparison of the sequence of the enzyme from bacterial and eukaryotic sources shows that the structure of this enzyme has been extremely well conserved throughout evolution []. NADPH-dependent nitrile oxidoreductases are involved in the biosynthesis of queuosine, a 7-deazaguanine-modified nucleoside found in tRNA(GUN) of bacteria and eukaryotes []. This entry represents a common fold found in GTP cyclohydrolase I and NADPH-dependent nitrile oxidoreducases [].; PDB: 1A8R_E 1GTP_L 1N3R_O 1N3T_O 1FBX_I 1N3S_B 1A9C_I 1IS8_E 1IS7_G 1WPL_F ....
Probab=26.65 E-value=42 Score=27.73 Aligned_cols=17 Identities=35% Similarity=0.632 Sum_probs=13.2
Q ss_pred hcceeeEEeecCcceee
Q 031254 10 KEGVASIALLPNGSISG 26 (163)
Q Consensus 10 ~eGvAsiAlLP~GsiSG 26 (163)
+.|+++||.+|+|.|-|
T Consensus 78 f~G~~~VaYiP~~~viG 94 (179)
T PF01227_consen 78 FFGTAHVAYIPGGRVIG 94 (179)
T ss_dssp EEEEEEEEEE-SSEEE-
T ss_pred eeeeEEEEEEeCCcccC
Confidence 46999999999998877
No 5
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=25.44 E-value=47 Score=27.53 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=14.4
Q ss_pred hcceeeEEeecCcceee
Q 031254 10 KEGVASIALLPNGSISG 26 (163)
Q Consensus 10 ~eGvAsiAlLP~GsiSG 26 (163)
+-|+++||.+|+|.|-|
T Consensus 83 f~G~~~VaYiP~~~ViG 99 (185)
T cd00642 83 FYGKVHIAYIPKDKVIG 99 (185)
T ss_pred eEEEEEEEEecCCeeee
Confidence 46899999999888776
No 6
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=22.95 E-value=55 Score=27.02 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.2
Q ss_pred hcceeeEEeecCcceee
Q 031254 10 KEGVASIALLPNGSISG 26 (163)
Q Consensus 10 ~eGvAsiAlLP~GsiSG 26 (163)
+.|++.||.+|+|.|-|
T Consensus 78 f~G~~hVaYiP~~~ViG 94 (180)
T TIGR00063 78 FDGKAHVAYIPKDKVIG 94 (180)
T ss_pred eeeEEEEEEecCCceec
Confidence 46899999999887776
No 7
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=22.01 E-value=1.1e+02 Score=28.67 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=35.1
Q ss_pred cccccccCCcccccchhhh---hhcccceee-------EEEEecccccchHHHHHHHh
Q 031254 86 FNNINHAHGWEKDVSGMVE---QEQEKNKIA-------VSFECETLKAEKVAEDHIKQ 133 (163)
Q Consensus 86 l~~id~~hGwe~dv~g~~e---~~~~~~~~~-------vsFeCETLkAd~AAe~hirk 133 (163)
|+++=++|+++....--++ +.+|+..+. ++|+|+-|+...-+---|+-
T Consensus 255 lsnvLdi~ayds~ss~nl~~k~~~~~~~~~h~d~~i~ti~~~~~~~~~~E~~n~wl~~ 312 (391)
T KOG2743|consen 255 LSNVLDIHAFDSESSINLDKKLQHSGGTQIHLDQSIGTITFEVPGLAKEEHLNMWLQN 312 (391)
T ss_pred HHHhcccccccccccchhhhhhccCCCCCcccCCCcceEEEEeCCccCHHHHHHHHHH
Confidence 7888888998877555555 345666666 99999999887766655555
No 8
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=19.61 E-value=1.5e+02 Score=19.85 Aligned_cols=46 Identities=11% Similarity=0.315 Sum_probs=26.6
Q ss_pred hcccceeeEEEEecccccchHHHHHHHhhcccccCcceEEeeeeeEee
Q 031254 106 EQEKNKIAVSFECETLKAEKVAEDHIKQYMPKLAGLDAVVNIGKMRIS 153 (163)
Q Consensus 106 ~~~~~~~~vsFeCETLkAd~AAe~hirkfmP~LaG~dAvvNvG~m~is 153 (163)
.-.+.++++.|.+++-.+-+.-+.|+..+--.|...| +++..++|+
T Consensus 32 ~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G--~~~~~~~v~ 77 (85)
T PF02120_consen 32 RLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQG--LEVVNLSVS 77 (85)
T ss_dssp EEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT---EEEEEEEE
T ss_pred EEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCC--CCeEEEEEE
Confidence 3455699999999886665555555555555555544 344455554
No 9
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=18.93 E-value=69 Score=27.01 Aligned_cols=17 Identities=47% Similarity=0.745 Sum_probs=14.1
Q ss_pred hcceeeEEeecCcceee
Q 031254 10 KEGVASIALLPNGSISG 26 (163)
Q Consensus 10 ~eGvAsiAlLP~GsiSG 26 (163)
+-|++.||.+|+|.+-|
T Consensus 98 f~G~~hVaYiP~~~VvG 114 (201)
T PRK12606 98 FIGVAHVAYLPGGKVLG 114 (201)
T ss_pred eeeEEEEEEeCCCcccc
Confidence 46899999999887766
No 10
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=18.85 E-value=1.4e+02 Score=30.08 Aligned_cols=71 Identities=23% Similarity=0.403 Sum_probs=48.6
Q ss_pred ccccccceeeE--EEEEEecCCCceeEEEEEecCccccccccccccCCcccccchhhhhhcccceeeEEEEecccccchH
Q 031254 49 ECSRGEDYRLI--KLAIIDYNKKKEHDVIVECRGHDAARFNNINHAHGWEKDVSGMVEQEQEKNKIAVSFECETLKAEKV 126 (163)
Q Consensus 49 ECsRgedyrLi--klTi~df~~k~E~~~vvEc~G~DAaRl~~id~~hGwe~dv~g~~e~~~~~~~~~vsFeCETLkAd~A 126 (163)
-.-|+.||-+- ++.|+| |-|| |+. +=.=|.+-+=+++|+|+| +.|+=+.+|+ |--.
T Consensus 310 l~~~d~dYiV~d~~V~ivD-----------~~TG----R~~---~gr~ws~GLHQaieaKe~---v~i~~e~~t~-a~It 367 (796)
T PRK12906 310 IMLKDIDYVVQDGEVLIVD-----------EFTG----RVM---EGRRYSDGLHQAIEAKEG---VKIQEENQTL-ATIT 367 (796)
T ss_pred HHhcCCcEEEECCEEEEEe-----------CCCC----CcC---CCCccChHHHHHHHHhcC---CCcCCCceee-eeeh
Confidence 35678889776 455555 4444 222 113499999999999886 6677777777 5555
Q ss_pred HHHHHHhhcccccCcc
Q 031254 127 AEDHIKQYMPKLAGLD 142 (163)
Q Consensus 127 Ae~hirkfmP~LaG~d 142 (163)
-....|.| |+|+|+-
T Consensus 368 ~qnfFr~Y-~kl~GmT 382 (796)
T PRK12906 368 YQNFFRMY-KKLSGMT 382 (796)
T ss_pred HHHHHHhc-chhhccC
Confidence 66777777 7999873
Done!