Query 031254
Match_columns 163
No_of_seqs 20 out of 22
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 18:20:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xip_A Nucleoporin NUP159; bet 23.1 1.3E+02 0.0044 25.4 5.3 78 9-89 161-263 (388)
2 3bb6_A Uncharacterized protein 17.8 34 0.0012 26.0 0.6 37 103-151 85-121 (127)
3 3ol0_A De novo designed monome 16.9 61 0.0021 21.0 1.6 13 15-27 18-30 (48)
4 1wur_A GTP cyclohydrolase I; b 16.4 61 0.0021 26.7 1.9 17 10-26 115-131 (220)
5 1is8_A GTP cyclohydrolase I; e 14.8 61 0.0021 26.9 1.5 17 10-26 128-144 (230)
6 2xzz_A Protein-glutamine gamma 14.0 82 0.0028 22.3 1.8 62 59-123 24-92 (102)
7 1a8r_A GTP cyclohydrolase I; p 13.8 75 0.0026 26.1 1.7 17 10-26 117-133 (221)
8 2ksl_A U1-agatoxin-TA1A; insec 13.1 7.5 0.00026 25.9 -3.6 23 34-56 21-43 (51)
9 3pur_A Lysine-specific demethy 12.3 95 0.0033 28.5 2.1 23 15-39 374-397 (528)
10 2l72_A Tgadf, actin depolymeri 12.2 94 0.0032 22.8 1.7 50 24-81 13-64 (139)
No 1
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=23.09 E-value=1.3e+02 Score=25.40 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=48.3
Q ss_pred hhcceeeEEeecCcceeeeeeecCCceeeeeecce------ecccccccc--ccceeeEEEEEEe-------cCC---Cc
Q 031254 9 VKEGVASIALLPNGSISGHFIQLPHSICYGLHGTE------LACERECSR--GEDYRLIKLAIID-------YNK---KK 70 (163)
Q Consensus 9 ~~eGvAsiAlLP~GsiSGHfi~~pss~c~Gl~Gte------~~ceRECsR--gedyrLiklTi~d-------f~~---k~ 70 (163)
...+|.+++|-|.|-..|.-=. +..+|=.-+.+ |+|+-++.- +++|+++.++.+. |.. ..
T Consensus 161 ~~~~Vs~v~WSpkG~~vg~~dg--~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~ 238 (388)
T 1xip_A 161 LAQNVTSFDVTNSQLAVLLKDR--SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISET 238 (388)
T ss_dssp EEESEEEEEECSSEEEEEETTS--CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSS
T ss_pred ccCCceEEEEcCCceEEEEcCC--cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCc
Confidence 4578999999999854443211 33456444443 788877742 4689999988762 222 12
Q ss_pred e-------eEEEEEecCccccccccc
Q 031254 71 E-------HDVIVECRGHDAARFNNI 89 (163)
Q Consensus 71 E-------~~~vvEc~G~DAaRl~~i 89 (163)
| ...||. +..+...|++.
T Consensus 239 ~~~~~~~~~~~ii~-~~~~~~~f~~~ 263 (388)
T 1xip_A 239 DDEVSYDQKMYIIK-HIDGSASFQET 263 (388)
T ss_dssp CSSCCCCEEEEEEE-EETTEEEEEEE
T ss_pred CcccCCcceEEEEE-cCCCCceeEcc
Confidence 2 567777 55666666655
No 2
>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13
Probab=17.76 E-value=34 Score=25.99 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=15.6
Q ss_pred hhhhcccceeeEEEEecccccchHHHHHHHhhcccccCcceEEeeeeeE
Q 031254 103 VEQEQEKNKIAVSFECETLKAEKVAEDHIKQYMPKLAGLDAVVNIGKMR 151 (163)
Q Consensus 103 ~e~~~~~~~~~vsFeCETLkAd~AAe~hirkfmP~LaG~dAvvNvG~m~ 151 (163)
|+..-++...+|+|-|+- ++++ .+ ||.+.|||.|++.
T Consensus 85 Ve~lsdd~~f~leFyc~~-------~dyf----~~-~~~~~~~~~~~~~ 121 (127)
T 3bb6_A 85 IEAMTDDTYFNIDFFVAP-------EVLM----EG-AQQRKVIHNGKLE 121 (127)
T ss_dssp EEESSTTCEEEEEEEECH-------HHHE----EE-C------------
T ss_pred EEEcCCCEEEEEEEEeCC-------chhh----cc-cCccceEeccccc
Confidence 333345788999999964 4433 33 7899999999863
No 3
>3ol0_A De novo designed monomer trefoil-fold SUB-domain forms HOMO-trimer assembly; beta-trefoil, synthetic protein, function-COMP only; 1.48A {Synthetic construct}
Probab=16.86 E-value=61 Score=21.01 Aligned_cols=13 Identities=23% Similarity=0.715 Sum_probs=10.5
Q ss_pred eEEeecCcceeee
Q 031254 15 SIALLPNGSISGH 27 (163)
Q Consensus 15 siAlLP~GsiSGH 27 (163)
.+-++|+|++.|-
T Consensus 18 ~LqI~PdG~V~GT 30 (48)
T 3ol0_A 18 YLRINPDGTVDGT 30 (48)
T ss_dssp EEEECTTSBEEEE
T ss_pred EeEECCCCCCccc
Confidence 5667899999885
No 4
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine tetrahydrobiopterin, structural genomics, NPPSFA; HET: 8DG; 1.82A {Thermus thermophilus} SCOP: d.96.1.1 PDB: 1wm9_A* 1wuq_A*
Probab=16.42 E-value=61 Score=26.69 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=13.7
Q ss_pred hcceeeEEeecCcceee
Q 031254 10 KEGVASIALLPNGSISG 26 (163)
Q Consensus 10 ~eGvAsiAlLP~GsiSG 26 (163)
.-|.|.||.+|+|.+-|
T Consensus 115 f~G~ahVaYiP~~kVvG 131 (220)
T 1wur_A 115 FFGKVHIGYIPDGKILG 131 (220)
T ss_dssp EEEEEEEEEECSSEEEC
T ss_pred eEEEEEEEEeCCCeeec
Confidence 45889999999887766
No 5
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A* 1fb1_A
Probab=14.84 E-value=61 Score=26.89 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=13.9
Q ss_pred hcceeeEEeecCcceee
Q 031254 10 KEGVASIALLPNGSISG 26 (163)
Q Consensus 10 ~eGvAsiAlLP~GsiSG 26 (163)
.-|+|.||.+|+|.+-|
T Consensus 128 f~GkahVaYiP~gkViG 144 (230)
T 1is8_A 128 FVGRVHIGYLPNKQVLG 144 (230)
T ss_dssp EEEEEEEEEECSEECCC
T ss_pred eeeEEEEEEcCCCeecc
Confidence 45889999999887766
No 6
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=14.00 E-value=82 Score=22.28 Aligned_cols=62 Identities=10% Similarity=0.146 Sum_probs=38.4
Q ss_pred EEEEEEecCCC--ceeEEEEEecCcccccccccccc--CC---cccccchhhhhhcccceeeEEEEeccccc
Q 031254 59 IKLAIIDYNKK--KEHDVIVECRGHDAARFNNINHA--HG---WEKDVSGMVEQEQEKNKIAVSFECETLKA 123 (163)
Q Consensus 59 iklTi~df~~k--~E~~~vvEc~G~DAaRl~~id~~--hG---we~dv~g~~e~~~~~~~~~vsFeCETLkA 123 (163)
..++++|+-.. +.-.+.||..|=.--+-....++ .+ |+..+ +-.+.|.++|.++|.|-.|+.
T Consensus 24 v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~~~~v~pg~~~~~~~~~---~P~~~G~~~L~a~f~s~~l~~ 92 (102)
T 2xzz_A 24 VQIVFKNPLPVTLTNVVFRLEGSGLQRPKILNVGDIGGNETVTLRQSF---VPVRPGPRQLIASLDSPQLSQ 92 (102)
T ss_dssp EEEEEECCSSSCBCSEEEEEEETTTEEEEEEEECCBCTTCEEEEEEEE---CCCSCSSCCCEEEEECGGGGS
T ss_pred EEEEEECCCCCcccCEEEEEECCCCCcceEEEcCcCCCCCEEEEEEEE---ecCcccceEEEEEEECCcccC
Confidence 56788887664 34455688887543322222333 22 33332 334789999999999999874
No 7
>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB: 1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A* 4du6_A*
Probab=13.77 E-value=75 Score=26.08 Aligned_cols=17 Identities=35% Similarity=0.712 Sum_probs=12.4
Q ss_pred hcceeeEEeecCcceee
Q 031254 10 KEGVASIALLPNGSISG 26 (163)
Q Consensus 10 ~eGvAsiAlLP~GsiSG 26 (163)
.-|++.||.+|+|.+-|
T Consensus 117 f~G~~hVaYiP~~~VvG 133 (221)
T 1a8r_A 117 IDGKATVAYIPKDSVIG 133 (221)
T ss_dssp EEEEEEEEECCSSEEEC
T ss_pred eeEEEEEEEecCCcccc
Confidence 34788888888876655
No 8
>2ksl_A U1-agatoxin-TA1A; insecticidal toxin, spider toxin, neurotoxin, crustacean hyperglycemic hormone, MOLT-inhibiting hormone; NMR {Tegenaria agrestis}
Probab=13.05 E-value=7.5 Score=25.85 Aligned_cols=23 Identities=39% Similarity=0.821 Sum_probs=16.7
Q ss_pred ceeeeeecceeccccccccccce
Q 031254 34 SICYGLHGTELACERECSRGEDY 56 (163)
Q Consensus 34 s~c~Gl~Gte~~ceRECsRgedy 56 (163)
.+|-|---...+|+.||-|.+-|
T Consensus 21 nvcngcgdqvaaceaecfrndvy 43 (51)
T 2ksl_A 21 NVCNGCGDQVAACEAECFRNDVY 43 (51)
T ss_dssp HHHHHHCSCHHHHHHTTSCSHHH
T ss_pred cccccchhHHHHHHHHHHhhhHH
Confidence 34556556678999999996554
No 9
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=12.28 E-value=95 Score=28.54 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=17.0
Q ss_pred eEEeecCcceeeeeeecC-Cceeeee
Q 031254 15 SIALLPNGSISGHFIQLP-HSICYGL 39 (163)
Q Consensus 15 siAlLP~GsiSGHfi~~p-ss~c~Gl 39 (163)
.+..+|+||+ |+|..| +|+.+|-
T Consensus 374 EtlfIPsGW~--HaV~tleDSIaigg 397 (528)
T 3pur_A 374 QTLLIPAGWI--HAVLTPVDSLVFGG 397 (528)
T ss_dssp CEEEECTTCE--EEEEEEEEEEEEEE
T ss_pred CEEEecCCce--EEEecCCCeEEEcC
Confidence 3566899998 888877 6666653
No 10
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=12.21 E-value=94 Score=22.79 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=19.9
Q ss_pred eeeeeeecC--CceeeeeecceeccccccccccceeeEEEEEEecCCCceeEEEEEecCc
Q 031254 24 ISGHFIQLP--HSICYGLHGTELACERECSRGEDYRLIKLAIIDYNKKKEHDVIVECRGH 81 (163)
Q Consensus 24 iSGHfi~~p--ss~c~Gl~Gte~~ceRECsRgedyrLiklTi~df~~k~E~~~vvEc~G~ 81 (163)
-|||.+..+ |++ .+--.-...=++...+.++|.|.++|-+ +| ++||.+|.
T Consensus 13 ~~~~~~~~~m~sGi--~vs~e~~~af~~lk~~k~~~~ii~~I~~----~e--ivv~~~g~ 64 (139)
T 2l72_A 13 SSGHIEGRHMASGM--GVDENCVARFNELKIRKTVKWIVFKIEN----TK--IVVEKDGK 64 (139)
T ss_dssp ---------CCTTC--EECHHHHHHHHHHTTTTCCCEEEEEEET----TE--EEEEEEES
T ss_pred cccccccccccCCC--CcCHHHHHHHHHHhCCCCeeEEEEEEcC----CE--EEEeecCC
Confidence 378887765 333 1111111122334344468988888865 33 55666664
Done!