Query 031254
Match_columns 163
No_of_seqs 20 out of 22
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 18:20:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031254.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031254hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o8ra3 d.136.1.4 (A:318-505) 28.6 16 0.0012 27.9 2.7 38 46-87 41-92 (188)
2 d2od6a1 d.58.4.22 (A:1-109) Hy 26.6 2.4 0.00017 29.2 -2.3 84 55-138 3-86 (109)
3 d1wura1 d.96.1.1 (A:32-216) GT 25.9 14 0.001 27.3 1.9 17 10-26 84-100 (185)
4 d2cy5a1 b.55.1.2 (A:31-159) EP 24.3 66 0.0048 20.8 5.0 35 95-129 85-120 (129)
5 d2gf3a2 d.16.1.3 (A:218-321) S 22.7 20 0.0015 22.9 2.0 17 125-141 75-91 (104)
6 d1jb7a1 b.40.4.3 (A:36-204) Te 22.4 12 0.00087 27.2 0.8 17 51-68 32-48 (169)
7 d1xdpa3 d.136.1.4 (A:315-501) 21.2 23 0.0017 26.9 2.3 42 46-91 42-97 (187)
8 d1wpla_ d.96.1.1 (A:) GTP cycl 21.0 19 0.0014 26.8 1.8 17 10-26 92-108 (194)
9 d2q3za3 b.1.5.1 (A:586-683) Tr 17.5 26 0.0019 23.1 1.6 65 59-123 20-90 (98)
10 d2op5a1 d.58.4.22 (A:4-115) Hy 17.5 26 0.0019 23.6 1.6 75 54-133 2-81 (112)
No 1
>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=28.63 E-value=16 Score=27.85 Aligned_cols=38 Identities=29% Similarity=0.319 Sum_probs=30.0
Q ss_pred cccccccccceeeEEEEEEecCC--------------CceeEEEEEecCccccccc
Q 031254 46 CERECSRGEDYRLIKLAIIDYNK--------------KKEHDVIVECRGHDAARFN 87 (163)
Q Consensus 46 ceRECsRgedyrLiklTi~df~~--------------k~E~~~vvEc~G~DAaRl~ 87 (163)
=-||...|-+..-||+||-=-.+ +|+++||||-+ |||.
T Consensus 41 fl~eAA~DP~V~~Ik~TlYR~a~~S~Ii~aLi~AA~nGK~Vtv~vELk----ARFD 92 (188)
T d2o8ra3 41 LLMEAAISPDVSEIRLTQYRVAENSSIISALEAAAQSGKKVSVFVELK----ARFD 92 (188)
T ss_dssp HHHHHHTCTTEEEEEEEESCCCSCCHHHHHHHHHHHTTCEEEEEECCC----SCC-
T ss_pred HHHHHhcCCCccEEEEEEEEecCCchHHHHHHHHHHcCCEEEEEEech----hhhh
Confidence 34778889999999999854332 99999999986 7873
No 2
>d2od6a1 d.58.4.22 (A:1-109) Hypothetical protein GOS_2359375 {environmental samples}
Probab=26.59 E-value=2.4 Score=29.20 Aligned_cols=84 Identities=10% Similarity=0.128 Sum_probs=52.6
Q ss_pred ceeeEEEEEEecCCCceeEEEEEecCccccccccccccCCcccccchhhhhhcccceeeEEEEecccccchHHHHHHHhh
Q 031254 55 DYRLIKLAIIDYNKKKEHDVIVECRGHDAARFNNINHAHGWEKDVSGMVEQEQEKNKIAVSFECETLKAEKVAEDHIKQY 134 (163)
Q Consensus 55 dyrLiklTi~df~~k~E~~~vvEc~G~DAaRl~~id~~hGwe~dv~g~~e~~~~~~~~~vsFeCETLkAd~AAe~hirkf 134 (163)
+=.||+.|++||.|+.|.-.-...-..-.-.+-.----+|--.-.+.-+-.+.|+-++..-||.+.=+|=++-...++++
T Consensus 3 ~~klis~t~~dF~se~dmel~~~~~e~~~~~~~~~Lk~~Gl~r~~~~~iwNk~~~fr~~~i~EYkd~~Afk~Cq~i~~k~ 82 (109)
T d2od6a1 3 EPKFTSFTTADFINDVDMELFIDAVEKTAPVWVKEMKSRGLLKFSMNRVWNKGEVFRVVMTYEYKDRASFEANIAYLEDT 82 (109)
T ss_dssp SCCEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSSSSCEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEEeCCCCcEEEEEEEEECCHHHHHHHHHHHHHH
Confidence 34689999999999877533221111100000000001454444444555577888999999999999999999999987
Q ss_pred cccc
Q 031254 135 MPKL 138 (163)
Q Consensus 135 mP~L 138 (163)
+..+
T Consensus 83 ~~~~ 86 (109)
T d2od6a1 83 FGKN 86 (109)
T ss_dssp TTSS
T ss_pred Hhhh
Confidence 6444
No 3
>d1wura1 d.96.1.1 (A:32-216) GTP cyclohydrolase I {Thermus thermophilus [TaxId: 274]}
Probab=25.89 E-value=14 Score=27.34 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=14.2
Q ss_pred hcceeeEEeecCcceee
Q 031254 10 KEGVASIALLPNGSISG 26 (163)
Q Consensus 10 ~eGvAsiAlLP~GsiSG 26 (163)
..|+++||.+|++.|-|
T Consensus 84 f~G~~~iaYiP~~~vvG 100 (185)
T d1wura1 84 FFGKVHIGYIPDGKILG 100 (185)
T ss_dssp EEEEEEEEEECSSEEEC
T ss_pred ccceEEEEEecCCCccC
Confidence 46899999999887766
No 4
>d2cy5a1 b.55.1.2 (A:31-159) EPS8-like protein 1, EPS8L1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.32 E-value=66 Score=20.81 Aligned_cols=35 Identities=31% Similarity=0.304 Sum_probs=25.5
Q ss_pred cccccchhhhhhcccceeeE-EEEecccccchHHHH
Q 031254 95 WEKDVSGMVEQEQEKNKIAV-SFECETLKAEKVAED 129 (163)
Q Consensus 95 we~dv~g~~e~~~~~~~~~v-sFeCETLkAd~AAe~ 129 (163)
-...++..+-+.++.++..+ -|.|+..+|+.-+++
T Consensus 85 ~~~~~fafi~~~~~~~~~~CHvF~C~~~~A~~I~~~ 120 (129)
T d2cy5a1 85 RSRSLLLLVCQEPERAQPDVHFFQGLLLGAELIRED 120 (129)
T ss_dssp CSSCEEEEEECCTTCSSCEEEEEEECTTHHHHHHHH
T ss_pred cccceEEEEecCCCCCceEEEEEEeccccHHHHHHH
Confidence 44567777766666667777 799998888776665
No 5
>d2gf3a2 d.16.1.3 (A:218-321) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}
Probab=22.73 E-value=20 Score=22.92 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=13.9
Q ss_pred hHHHHHHHhhcccccCc
Q 031254 125 KVAEDHIKQYMPKLAGL 141 (163)
Q Consensus 125 ~AAe~hirkfmP~LaG~ 141 (163)
+...++|+++||.|.|.
T Consensus 75 ~~l~~~v~~~~Pgl~~~ 91 (104)
T d2gf3a2 75 SNLRAFLEEYMPGANGE 91 (104)
T ss_dssp HHHHHHHHHHCGGGCSC
T ss_pred HHHHHHHHHHCCCCCCC
Confidence 34688999999999765
No 6
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}
Probab=22.43 E-value=12 Score=27.17 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=13.6
Q ss_pred ccccceeeEEEEEEecCC
Q 031254 51 SRGEDYRLIKLAIIDYNK 68 (163)
Q Consensus 51 sRgedyrLiklTi~df~~ 68 (163)
|||-||- +.|||+|...
T Consensus 32 s~g~D~~-~tl~I~D~S~ 48 (169)
T d1jb7a1 32 TNQERYI-CSLKIVDPTL 48 (169)
T ss_dssp CSSSCEE-EEEEEEBTTB
T ss_pred cCCCcEE-EEEEEEeCCC
Confidence 5888985 7899999764
No 7
>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}
Probab=21.19 E-value=23 Score=26.90 Aligned_cols=42 Identities=29% Similarity=0.315 Sum_probs=32.2
Q ss_pred cccccccccceeeEEEEEEecC--------------CCceeEEEEEecCccccccccccc
Q 031254 46 CERECSRGEDYRLIKLAIIDYN--------------KKKEHDVIVECRGHDAARFNNINH 91 (163)
Q Consensus 46 ceRECsRgedyrLiklTi~df~--------------~k~E~~~vvEc~G~DAaRl~~id~ 91 (163)
=-||...|-+..-||+||-=-. ++|+++|+||-+ |||.--..
T Consensus 42 fl~eAA~DP~V~~Ik~TlYR~a~~S~Ii~aLi~Aa~nGK~Vtv~vELk----ARFDEe~N 97 (187)
T d1xdpa3 42 LLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHNGKKVTVVVELQ----ARFDEEAN 97 (187)
T ss_dssp HHHHHHHCTTEEEEEEEESSCCTTCHHHHHHHHHHHTTCEEEEEECTT----CSSTTTTT
T ss_pred HHHHHhcCCCccEEEEEEEEecCCccHHHHHHHHHHcCCEEEEEEech----hcccHHHH
Confidence 3467788899999999985433 299999999986 78865444
No 8
>d1wpla_ d.96.1.1 (A:) GTP cyclohydrolase I {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.02 E-value=19 Score=26.80 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.0
Q ss_pred hcceeeEEeecCcceee
Q 031254 10 KEGVASIALLPNGSISG 26 (163)
Q Consensus 10 ~eGvAsiAlLP~GsiSG 26 (163)
.-|++.||.+|++.|-|
T Consensus 92 f~G~~~IaYiP~~~viG 108 (194)
T d1wpla_ 92 FVGRVHIGYLPNKQVLG 108 (194)
T ss_dssp EEEEEEEEEECSSEECC
T ss_pred eeeEEEEEEEeCCcccc
Confidence 46899999999887766
No 9
>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Probab=17.54 E-value=26 Score=23.11 Aligned_cols=65 Identities=18% Similarity=0.148 Sum_probs=38.9
Q ss_pred EEEEEEecCCC--ceeEEEEEecCc-cc-ccccccccc--CCcccccchhhhhhcccceeeEEEEeccccc
Q 031254 59 IKLAIIDYNKK--KEHDVIVECRGH-DA-ARFNNINHA--HGWEKDVSGMVEQEQEKNKIAVSFECETLKA 123 (163)
Q Consensus 59 iklTi~df~~k--~E~~~vvEc~G~-DA-aRl~~id~~--hGwe~dv~g~~e~~~~~~~~~vsFeCETLkA 123 (163)
.++|+.|.-.. +...+.+|..|= +. .+.+-.+.+ .+.-.--+..+-.+.|.++|.++|.|-+|+.
T Consensus 20 v~vsF~NPL~~~L~~c~~~vEG~GL~~~~~~~~~~~~v~pg~~~~~~~~~~P~~~G~~~L~a~f~s~~l~~ 90 (98)
T d2q3za3 20 AEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEIPDPVEAGEEVKVRMDLVPLHMGLHKLVVNFESDKLKA 90 (98)
T ss_dssp EEEEEECCSSSCBCSEEEEEECTTTCSSCEEEEECSCBCTTCEEEEEEEECCCSSSCEEEEEEEECSSSCC
T ss_pred EEEEEECCCCCchhCEEEEEEcCCcCcCcEEEeCCCccCCCCEEEEEEEEEcCCcccEEEEEEEeCCccCC
Confidence 46788887653 456677887664 21 222211222 3322223334445889999999999998863
No 10
>d2op5a1 d.58.4.22 (A:4-115) Hypothetical protein GOS_7213774 {environmental samples}
Probab=17.51 E-value=26 Score=23.60 Aligned_cols=75 Identities=16% Similarity=0.375 Sum_probs=46.5
Q ss_pred cceeeEEEEEEecCCCceeEEEEEecC----ccc-cccccccccCCcccccchhhhhhcccceeeEEEEecccccchHHH
Q 031254 54 EDYRLIKLAIIDYNKKKEHDVIVECRG----HDA-ARFNNINHAHGWEKDVSGMVEQEQEKNKIAVSFECETLKAEKVAE 128 (163)
Q Consensus 54 edyrLiklTi~df~~k~E~~~vvEc~G----~DA-aRl~~id~~hGwe~dv~g~~e~~~~~~~~~vsFeCETLkAd~AAe 128 (163)
+|=.||+.|++||.|+.|.-.-.+.-. .++ -+|. -+|--.-.+.-+-.|.+ -++..-||.+.=+|=++-.
T Consensus 2 ~~s~lin~~~~dF~Se~dmel~~~~~e~~~~~~~~~~Lk----~~Gl~R~~~~riWNke~-frl~~ifEYkd~eAfk~Cq 76 (112)
T d2op5a1 2 DETAFLNSLFMDFTSENELELFLKSLDEVWSEDLYSRLS----AAGLIRHVISKVWNKEQ-HRISMVFEYDSKEGYQKCQ 76 (112)
T ss_dssp CCCCEEEEEEEECSSHHHHHHHHTTHHHHSCHHHHHHHH----HHTEEEEEEEEECCTTC-CEEEEEEEESCHHHHHHHH
T ss_pred CCcceEEEEEEEcCCHHHHHHHHHHHHHHHhHHHHHHHH----hcCCcceEEEEEECCCC-eEEEEEEEECCHHHHHHHH
Confidence 355799999999999887643222110 000 0000 03433333333444655 7899999999999999988
Q ss_pred HHHHh
Q 031254 129 DHIKQ 133 (163)
Q Consensus 129 ~hirk 133 (163)
..+++
T Consensus 77 ~i~~k 81 (112)
T d2op5a1 77 EIIDK 81 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
Done!