BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031255
(163 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7Z992|SST6_SCHPO ESCRT-I complex subunit vps23 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sst6 PE=3 SV=2
Length = 487
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 88 EDLITVKDAKIVVESQDEDKI-QVRVDLTGDATQRVFDKVLTNLA--------RSAPPIP 138
ED T++ I V++QDE+KI +VR+ L+ A FDK + A S PPI
Sbjct: 40 EDTFTLQAINIEVDTQDENKIEEVRIYLSTPA----FDKTILTSACITVRSYYPSQPPIV 95
Query: 139 GFRREKGGNALYLGIF 154
EKGG Y +
Sbjct: 96 QLLDEKGGKHKYTSLL 111
>sp|Q1GYZ0|PYRC_METFK Dihydroorotase OS=Methylobacillus flagellatus (strain KT / ATCC
51484 / DSM 6875) GN=pyrC PE=3 SV=1
Length = 345
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 8 MTIIPSKFQNI----ELFSPRSCRNYTLCHP-NAPKSVNFFHF-QNSSCFF---VRPSLY 58
M + +FQ + E + + N+ P N ++ H N + F +RP Y
Sbjct: 159 MVPLLERFQGLRVVFEHITTKDAANFVAGAPENVAATITAHHLLMNRNAMFNGGIRPHHY 218
Query: 59 CNPLMRRVQHVLKTVSAVDSG 79
C P+++R +H L V+A SG
Sbjct: 219 CLPVLKREEHRLALVAAATSG 239
>sp|A2AV37|EX3L1_DANRE Exocyst complex component 3-like protein OS=Danio rerio GN=exoc3l1
PE=2 SV=1
Length = 780
Score = 33.5 bits (75), Expect = 0.59, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 105 EDKIQVRVDLTGDATQRVFDKVLTNLARSAPPI-PGFR 141
E+ + V +D+ GD + V VL L +SAPP+ PG+R
Sbjct: 720 EEHVSVLLDIRGDVPKEVRKSVLDFLDQSAPPLPPGYR 757
>sp|Q3M725|TIG_ANAVT Trigger factor OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=tig PE=3 SV=1
Length = 471
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREK 144
+I + +++T + TQ+ +++V+ NL+R+ IPGFR+ K
Sbjct: 12 QIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRKGK 48
>sp|Q8YQX9|TIG_NOSS1 Trigger factor OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=tig
PE=3 SV=1
Length = 471
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREK 144
+I + +++T + TQ+ +++V+ NL+R+ IPGFR+ K
Sbjct: 12 QIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRKGK 48
>sp|Q8HTL7|RPOB2_CHLRE DNA-directed RNA polymerase subunit beta C-terminal section
OS=Chlamydomonas reinhardtii GN=rpoB2 PE=2 SV=1
Length = 626
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 1 MASASATMTIIPSKFQNIELFSPRSCRNYT-LCHPNAPKSVNFFHFQNSSCFFVRPSLYC 59
M A A+ + + SK L+ R L PN P + F +NS CF
Sbjct: 402 MYGADASRSFVLSK-----LYEARKKTGLKWLLDPNHPGKIRLFDGRNSECF-------D 449
Query: 60 NPLMRRVQHVLKTVSAVDSGVEVSITEPEDLIT 92
+ + +VLK V VD + T P L+T
Sbjct: 450 QTVTVGIAYVLKLVHMVDDKMHARSTGPYSLVT 482
>sp|B2UFJ8|PYRC_RALPJ Dihydroorotase OS=Ralstonia pickettii (strain 12J) GN=pyrC PE=3
SV=1
Length = 344
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 47 NSSCFFV---RPSLYCNPLMRRVQHVLKTVSAVDSG 79
N + FV RP YC P+++R H L V+A SG
Sbjct: 204 NRNALFVGGIRPHYYCLPVLKRETHRLALVAAATSG 239
>sp|Q8Y249|PYRC_RALSO Dihydroorotase OS=Ralstonia solanacearum (strain GMI1000) GN=pyrC
PE=3 SV=1
Length = 344
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 47 NSSCFFV---RPSLYCNPLMRRVQHVLKTVSAVDSG 79
N + FV RP YC P+++R H L V+A SG
Sbjct: 204 NRNALFVGGIRPHYYCLPVLKRETHRLALVAAATSG 239
>sp|A9BSM4|PYRC_DELAS Dihydroorotase OS=Delftia acidovorans (strain DSM 14801 / SPH-1)
GN=pyrC PE=3 SV=1
Length = 346
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 53 VRPSLYCNPLMRRVQHVLKTVSAVDSGV 80
+RP YC P+++R H L V A SG+
Sbjct: 215 IRPHYYCLPVLKRETHRLALVEAATSGL 242
>sp|A1SV88|HEM1_PSYIN Glutamyl-tRNA reductase OS=Psychromonas ingrahamii (strain 37)
GN=hemA PE=3 SV=1
Length = 419
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 53 VRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDA 96
+RPSLYC + +QH+ + +DS V + EP+ L +K A
Sbjct: 82 LRPSLYCYSEYQAIQHLFRVSCGLDSLV---LGEPQILGQIKQA 122
>sp|Q7MFB3|PYRC_VIBVY Dihydroorotase OS=Vibrio vulnificus (strain YJ016) GN=pyrC PE=3
SV=2
Length = 342
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 53 VRPSLYCNPLMRRVQHVLKTVSAVDSG 79
++P YC P+++R H L +SA SG
Sbjct: 211 IKPHFYCLPILKRNTHQLALISAATSG 237
>sp|C6DKU3|PYRC_PECCP Dihydroorotase OS=Pectobacterium carotovorum subsp. carotovorum
(strain PC1) GN=pyrC PE=3 SV=1
Length = 347
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 53 VRPSLYCNPLMRRVQHVLKTVSAVDSGVE 81
VRP LYC P+++R H AV SG E
Sbjct: 216 VRPHLYCLPILKRNTHQQALREAVASGCE 244
>sp|Q8D3T9|PYRC_VIBVU Dihydroorotase OS=Vibrio vulnificus (strain CMCP6) GN=pyrC PE=3
SV=2
Length = 342
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 53 VRPSLYCNPLMRRVQHVLKTVSAVDSG 79
++P YC P+++R H L +SA SG
Sbjct: 211 IKPHFYCLPILKRNTHQLALISAATSG 237
>sp|P56994|HEM1_NEIMB Glutamyl-tRNA reductase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=hemA PE=3 SV=1
Length = 415
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 53 VRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQD 104
+RP LY + V+H + +DS V + EP+ L +KDA V + Q+
Sbjct: 79 IRPYLYALDMQETVRHAFRVACGLDSMV---LGEPQILGQIKDAVRVAQEQE 127
>sp|Q5P7G6|HEM1_AROAE Glutamyl-tRNA reductase OS=Aromatoleum aromaticum (strain EbN1)
GN=hemA PE=3 SV=1
Length = 418
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 45 FQNSSCFFVRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDA 96
F + V P LY P ++HV + S +DS V + EP+ L VKDA
Sbjct: 72 FHHMPLSEVSPYLYTYPQRDAIRHVFRVASGLDSMV---LGEPQILGQVKDA 120
>sp|B7VSB8|RNB_VIBSL Exoribonuclease 2 OS=Vibrio splendidus (strain LGP32) GN=rnb PE=3
SV=1
Length = 668
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 38 KSVNFFHFQNSSCFFVRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLI 91
K F + + FF+ P P M++ H K ++ + + E + EPE+LI
Sbjct: 31 KGFGFLEVDSKTSFFIPP-----PYMKKCVHGDKVIAIIRTEKEREVAEPEELI 79
>sp|B1XL18|TIG_SYNP2 Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=tig PE=3 SV=1
Length = 454
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREK 144
K++ E ++ + +++ D TQ+ +D + LAR+ +PGFR+ K
Sbjct: 2 KVIQEKLPASQVGLEIEVPADVTQKAYDDTVRKLARTV-NLPGFRKGK 48
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,343,248
Number of Sequences: 539616
Number of extensions: 2091784
Number of successful extensions: 6280
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 6270
Number of HSP's gapped (non-prelim): 31
length of query: 163
length of database: 191,569,459
effective HSP length: 108
effective length of query: 55
effective length of database: 133,290,931
effective search space: 7331001205
effective search space used: 7331001205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)