Query 031255
Match_columns 163
No_of_seqs 26 out of 28
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 18:22:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d3o_1 Trigger factor, TF; rib 98.1 2.1E-06 7E-11 62.0 4.0 44 97-142 2-45 (112)
2 2nsc_A Trigger factor, TF; cha 98.1 4.1E-06 1.4E-10 60.2 5.2 46 97-143 2-47 (109)
3 1p9y_A Trigger factor, TF; alp 98.1 7E-06 2.4E-10 60.0 6.0 46 96-142 4-49 (121)
4 3gty_X Trigger factor, TF; cha 96.8 0.0016 5.6E-08 56.0 5.8 45 97-142 2-46 (433)
5 1t11_A Trigger factor, TF; hel 96.6 0.0035 1.2E-07 53.3 6.1 46 96-142 4-49 (392)
6 1w26_A Trigger factor, TF; cha 96.2 0.0045 1.5E-07 53.1 4.7 45 97-142 2-46 (432)
7 2di8_A Filamin-B; beta-sandwic 44.7 40 0.0014 23.5 4.9 36 77-116 51-86 (111)
8 1tol_A G3P - TOLA, protein (fu 42.0 41 0.0014 27.6 5.2 39 96-139 155-194 (222)
9 1lql_A OSMC, osmotical inducib 35.6 51 0.0017 24.3 4.5 39 91-129 91-139 (166)
10 2nqc_A Filamin-C; immunoglobul 33.5 68 0.0023 23.6 4.9 35 77-116 85-119 (138)
11 2e8e_A Hypothetical protein AQ 28.3 90 0.0031 21.6 4.5 39 91-129 59-104 (132)
12 2ygw_A Malonyl-COA decarboxyla 27.0 12 0.00042 33.8 -0.2 23 121-143 276-307 (460)
13 3q9p_A Heat shock protein beta 23.7 46 0.0016 22.0 2.2 9 104-112 19-27 (85)
14 2dlg_A Filamin-B; beta-sandwic 23.7 1.8E+02 0.0061 20.1 5.4 21 96-116 57-77 (102)
15 1ml8_A Hypothetical protein (C 23.3 1.2E+02 0.0041 21.0 4.4 39 91-129 61-107 (134)
16 3kh0_A Ralgds, ralgef, RAL gua 21.9 1.5E+02 0.0051 23.2 5.0 57 96-153 28-88 (140)
17 1x5e_A Thioredoxin domain cont 21.7 60 0.0021 20.9 2.4 34 105-141 86-120 (126)
18 2eea_A Filamin-B; beta-sandwic 21.5 1.7E+02 0.006 20.0 4.9 37 77-117 61-97 (115)
19 2bp3_A Filamin A; structural p 21.1 1.5E+02 0.0052 19.5 4.4 36 77-116 46-81 (97)
20 2p3p_A Hypothetical protein; M 20.5 47 0.0016 27.1 2.0 23 24-46 91-113 (207)
21 2pn2_A Uncharacterized protein 20.3 83 0.0028 22.9 3.2 38 91-128 86-129 (155)
No 1
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=98.11 E-value=2.1e-06 Score=61.97 Aligned_cols=44 Identities=27% Similarity=0.625 Sum_probs=34.7
Q ss_pred EEEEEcCCCCeEEEEEEecChhhHHHHHHHHHHhhhcCCCCCCcee
Q 031255 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRR 142 (163)
Q Consensus 97 kV~v~s~dd~~IqiRVdlsG~~Tq~VFd~Vf~klvraAqPIPGFRR 142 (163)
+++++. +..+.+|.|+|+.+..+.-+|++|.++++.+ -|||||+
T Consensus 2 ~v~~e~-~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~-~ipGFRk 45 (112)
T 2d3o_1 2 AELISK-EGNKVEFKVSVPAAEVNRAYDQVWAGLARDV-RVPGFRP 45 (112)
T ss_dssp ---------CCEEEEECCCGGGTHHHHHHHHHHHHTTS-CBTTBCT
T ss_pred ceEEEc-CCcEEEEEEEECHHHHHHHHHHHHHHHHhhC-CCCCcCC
Confidence 467888 8999999999999999999999999999998 4999997
No 2
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=98.09 E-value=4.1e-06 Score=60.16 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=42.3
Q ss_pred EEEEEcCCCCeEEEEEEecChhhHHHHHHHHHHhhhcCCCCCCceec
Q 031255 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRRE 143 (163)
Q Consensus 97 kV~v~s~dd~~IqiRVdlsG~~Tq~VFd~Vf~klvraAqPIPGFRR~ 143 (163)
+++++..++.+.+|.|+|+.+..+.-+|+++.++++.+ -|||||+-
T Consensus 2 ~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~-~ipGFRkG 47 (109)
T 2nsc_A 2 EVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRV-EIPGFRKG 47 (109)
T ss_dssp EEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHHHTTC-CCTTSCTT
T ss_pred ceEEEEcCCCEEEEEEEECHHHHHHHHHHHHHHHhccC-CCCCcCCC
Confidence 46788889999999999999999999999999999998 59999973
No 3
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=98.06 E-value=7e-06 Score=60.02 Aligned_cols=46 Identities=22% Similarity=0.397 Sum_probs=43.1
Q ss_pred eEEEEEcCCCCeEEEEEEecChhhHHHHHHHHHHhhhcCCCCCCcee
Q 031255 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRR 142 (163)
Q Consensus 96 fkV~v~s~dd~~IqiRVdlsG~~Tq~VFd~Vf~klvraAqPIPGFRR 142 (163)
.+++++..+..+.+|.|+|+.+..+.-+|++|.++++.+ -|||||+
T Consensus 4 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~v-~ipGFRk 49 (121)
T 1p9y_A 4 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKV-RIDGLRK 49 (121)
T ss_dssp CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTC-CCTTSCT
T ss_pred ceEEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhC-ccCCcCC
Confidence 567889999999999999999999999999999999998 5999996
No 4
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=96.80 E-value=0.0016 Score=55.98 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=40.1
Q ss_pred EEEEEcCCCCeEEEEEEecChhhHHHHHHHHHHhhhcCCCCCCcee
Q 031255 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRR 142 (163)
Q Consensus 97 kV~v~s~dd~~IqiRVdlsG~~Tq~VFd~Vf~klvraAqPIPGFRR 142 (163)
+|+++..+.++..+.|+|+...-+.-+|++|.++++.+. |||||+
T Consensus 2 ~v~~~~~e~~~~~l~i~v~~~~~~~~~~~~~k~~~k~v~-ipGFRk 46 (433)
T 3gty_X 2 EVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRK 46 (433)
T ss_dssp EEEEEEEETTEEEEEEECCTTHHHHHHHHHHHHHHTSCC-CCC--C
T ss_pred ceEEEEcCCCEEEEEEEEcHHHHHHHHHHHHHHHHHhCC-CCCCCC
Confidence 467888899999999999999999999999999999997 999996
No 5
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=96.57 E-value=0.0035 Score=53.28 Aligned_cols=46 Identities=17% Similarity=0.370 Sum_probs=43.2
Q ss_pred eEEEEEcCCCCeEEEEEEecChhhHHHHHHHHHHhhhcCCCCCCcee
Q 031255 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRR 142 (163)
Q Consensus 96 fkV~v~s~dd~~IqiRVdlsG~~Tq~VFd~Vf~klvraAqPIPGFRR 142 (163)
.+|+++.-+..+.+|.|+|+....+.-+|+++.++++.+ -|||||+
T Consensus 4 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~-~ipGFRk 49 (392)
T 1t11_A 4 MQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNR-RFDGFRK 49 (392)
T ss_dssp CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTC-CCTTSCS
T ss_pred ceEEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhccC-CCCCCCC
Confidence 568889999999999999999999999999999999998 6999996
No 6
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=96.20 E-value=0.0045 Score=53.14 Aligned_cols=45 Identities=24% Similarity=0.448 Sum_probs=41.8
Q ss_pred EEEEEcCCCCeEEEEEEecChhhHHHHHHHHHHhhhcCCCCCCcee
Q 031255 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRR 142 (163)
Q Consensus 97 kV~v~s~dd~~IqiRVdlsG~~Tq~VFd~Vf~klvraAqPIPGFRR 142 (163)
+|+++.-+..+.+|.|+|+....+.-+|+++.++++.+ -|||||+
T Consensus 2 ~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~-~ipGFRk 46 (432)
T 1w26_A 2 QVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKV-RIDGFRK 46 (432)
T ss_dssp EEECCBCSTTEEEEEEEECHHHHHHHHHHHHHHHHHHT-TCGGGCC
T ss_pred ceEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhhhC-CCCCcCC
Confidence 46778889999999999999999999999999999998 5999997
No 7
>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=44.70 E-value=40 Score=23.46 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=27.0
Q ss_pred cCCCeeeecCCCceeeeeeeEEEEEcCCCCeEEEEEEecC
Q 031255 77 DSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTG 116 (163)
Q Consensus 77 ~SG~~~S~Td~~~sis~~dfkV~v~s~dd~~IqiRVdlsG 116 (163)
.+++++++.|+++. .+.|+-...+.++..|.|.+.|
T Consensus 51 p~~~~~~v~d~~dG----ty~v~Y~p~~~G~y~I~V~~~g 86 (111)
T 2di8_A 51 PSKVDIQTEDLEDG----TCKVSYFPTVPGVYIVSTKFAD 86 (111)
T ss_dssp SSCCCEECCBCTTS----CEEEEECCCSCSEEEEEEEESS
T ss_pred CCCceEEEEECCCC----EEEEEEEeCCCeEEEEEEEECC
Confidence 46788888888872 1344566688899999999988
No 8
>1tol_A G3P - TOLA, protein (fusion protein consisting of minor coat protein, glycine rich linker, TOLA,...; bacteriophage M13, phage infection; 1.85A {Enterobacteria phage M13} SCOP: b.37.1.1 d.212.1.1 PDB: 2x9a_B 3qdr_A* 3qdp_A* 1s62_A
Probab=41.96 E-value=41 Score=27.55 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=28.7
Q ss_pred eEEEEEcC-CCCeEEEEEEecChhhHHHHHHHHHHhhhcCCCCCC
Q 031255 96 AKIVVESQ-DEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPG 139 (163)
Q Consensus 96 fkV~v~s~-dd~~IqiRVdlsG~~Tq~VFd~Vf~klvraAqPIPG 139 (163)
+.|.+.-. +...+.++|. ||+ ..||+.-..+++.| |+|=
T Consensus 155 v~Vrf~L~pdG~Vlsv~V~-SGd---~aLD~AAl~AVrrA-pfP~ 194 (222)
T 1tol_A 155 CTLRIKLAPDGMLLDIKPE-GGD---PALCQAALAAAKLA-KIPK 194 (222)
T ss_dssp EEEEEEECTTSCEEEEEEE-EEC---HHHHHHHHHHHHHC-CCCC
T ss_pred EEEEEEECCCCCEEEEEec-CCC---HHHHHHHHHHHHhC-CCCc
Confidence 34444444 4455668888 886 78999999999999 8883
No 9
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=35.57 E-value=51 Score=24.33 Aligned_cols=39 Identities=10% Similarity=0.250 Sum_probs=27.8
Q ss_pred eeeeeeEEEEEcC-C----CC-----eEEEEEEecChhhHHHHHHHHHH
Q 031255 91 ITVKDAKIVVESQ-D----ED-----KIQVRVDLTGDATQRVFDKVLTN 129 (163)
Q Consensus 91 is~~dfkV~v~s~-d----d~-----~IqiRVdlsG~~Tq~VFd~Vf~k 129 (163)
+.++++.|.|+-+ + ++ +|.++|.+.|+.++.-++++...
T Consensus 91 i~~~~~~v~v~~~~~~~~~~~~~~f~~i~~~v~l~~~~~~e~~~~l~~~ 139 (166)
T 1lql_A 91 ITINKLLMNVTGSRSTNPTDGYFGLREINLHWEIHSPNSETEIKEFIDF 139 (166)
T ss_dssp CCCSEEEEEEEEEECSSCSSSCCSEEEEEEEEEEECSSCHHHHHHHHHH
T ss_pred CCcceEEEEEEEEEcCccccCCCCeEEEEEEEEEcCCCCHHHHHHHHHH
Confidence 4567777777664 1 22 58899999998888877777664
No 10
>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A {Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A
Probab=33.46 E-value=68 Score=23.59 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=24.5
Q ss_pred cCCCeeeecCCCceeeeeeeEEEEEcCCCCeEEEEEEecC
Q 031255 77 DSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTG 116 (163)
Q Consensus 77 ~SG~~~S~Td~~~sis~~dfkV~v~s~dd~~IqiRVdlsG 116 (163)
.+|++..|.|+++. +.|+-...+.++..|.|.+.|
T Consensus 85 Ps~~~~~~~d~~dG-----y~V~YtP~~~G~y~I~Vk~~g 119 (138)
T 2nqc_A 85 PSKVQLDCRECPEG-----HVVTYTPMAPGNYLIAIKYGG 119 (138)
T ss_dssp SSCCEEEEEEETTE-----EEEEEECCSCEEEEEEEEESS
T ss_pred CCCCeeeEEECCCc-----EEEEEEcCCCEEEEEEEEECC
Confidence 35566666666543 456677788888889998877
No 11
>2e8e_A Hypothetical protein AQ_1549; osmatically induced protein; 1.70A {Aquifex aeolicus} PDB: 2e8c_A 2e8f_A 2egt_A
Probab=28.27 E-value=90 Score=21.56 Aligned_cols=39 Identities=18% Similarity=0.442 Sum_probs=25.6
Q ss_pred eeeeeeEEEEEcC--CC-----CeEEEEEEecChhhHHHHHHHHHH
Q 031255 91 ITVKDAKIVVESQ--DE-----DKIQVRVDLTGDATQRVFDKVLTN 129 (163)
Q Consensus 91 is~~dfkV~v~s~--dd-----~~IqiRVdlsG~~Tq~VFd~Vf~k 129 (163)
+.++++.|.|+-+ ++ .+|.+++.+.|..++.-++++...
T Consensus 59 ~~~~~~~v~v~~~~~~~~~~~~~~i~~~~~v~~~~~~e~~~~l~~~ 104 (132)
T 2e8e_A 59 QEVKDIKIFLKGKRREKHPKIYEEIEIKYVAVGKVEEKALEQAVKL 104 (132)
T ss_dssp CEEEEEEEEEEEEECSSSSCCEEEEEEEEEEEEECCHHHHHHHHHH
T ss_pred CCceEEEEEEEEEECCCCCCceEEEEEEEEEeccCCHHHHHHHHHH
Confidence 5567777777663 22 147778888887777666666654
No 12
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=26.98 E-value=12 Score=33.84 Aligned_cols=23 Identities=39% Similarity=0.783 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhhcCC---------CCCCceec
Q 031255 121 RVFDKVLTNLARSAP---------PIPGFRRE 143 (163)
Q Consensus 121 ~VFd~Vf~klvraAq---------PIPGFRR~ 143 (163)
..-.+|.+.|-+.-| ||||||+-
T Consensus 276 fLIKrVV~~L~~E~P~lktF~TLSPIPGF~~W 307 (460)
T 2ygw_A 276 FLIKRVVKELQREFPHLGVFSSLSPIPGFTKW 307 (460)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECBC-CCHHHH
T ss_pred HHHHHHHHHHHHhCcCccceeecCCCccHHHH
Confidence 334455555555544 99999986
No 13
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=23.75 E-value=46 Score=21.99 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=4.4
Q ss_pred CCCeEEEEE
Q 031255 104 DEDKIQVRV 112 (163)
Q Consensus 104 dd~~IqiRV 112 (163)
+.+.|+|.|
T Consensus 19 ~~edi~V~v 27 (85)
T 3q9p_A 19 APDELTVKT 27 (85)
T ss_dssp CCSEEEEEE
T ss_pred ChHHEEEEE
Confidence 444555544
No 14
>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=23.74 E-value=1.8e+02 Score=20.12 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=16.9
Q ss_pred eEEEEEcCCCCeEEEEEEecC
Q 031255 96 AKIVVESQDEDKIQVRVDLTG 116 (163)
Q Consensus 96 fkV~v~s~dd~~IqiRVdlsG 116 (163)
..|+-..++.++-.|.|.+.|
T Consensus 57 y~v~ytP~e~G~h~v~V~~~g 77 (102)
T 2dlg_A 57 HCVRFVPQEMGVHTVSVKYRG 77 (102)
T ss_dssp EEEEBCCCTTCEEEEEEESSS
T ss_pred EEEEEEecCCEeEEEEEEECC
Confidence 455566788999999999888
No 15
>1ml8_A Hypothetical protein (CRP region); structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.60A {Escherichia coli} SCOP: d.227.1.2
Probab=23.32 E-value=1.2e+02 Score=20.97 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=23.8
Q ss_pred eeeeeeEEEEEcC--CC-----CeEEEEEEecC-hhhHHHHHHHHHH
Q 031255 91 ITVKDAKIVVESQ--DE-----DKIQVRVDLTG-DATQRVFDKVLTN 129 (163)
Q Consensus 91 is~~dfkV~v~s~--dd-----~~IqiRVdlsG-~~Tq~VFd~Vf~k 129 (163)
+.++++.|.|+-+ ++ ..|.+++++.+ ..++.-++++...
T Consensus 61 ~~~~~~~v~v~~~~~~~~~~~~~~i~~~~~v~~~~~~~e~~~~l~~~ 107 (134)
T 1ml8_A 61 QDVVDCEVKLTSERREADTRLFTHINLHFIVTGRDLKDAAVARAVDL 107 (134)
T ss_dssp CCEEEEEEEEEEEECC---CCEEEEEEEEEEEESSCCHHHHHHHHHH
T ss_pred CCceEEEEEEEEEECCCCCCceEEEEEEEEEEcCCCCHHHHHHHHHh
Confidence 4456666666653 22 25677788877 6677666666553
No 16
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=21.89 E-value=1.5e+02 Score=23.21 Aligned_cols=57 Identities=9% Similarity=0.142 Sum_probs=41.0
Q ss_pred eEEEEEcCCCCeEE-EEEEecChhhHHHHHHHHHHhhhcCCCCCCce---eccCCccCCccc
Q 031255 96 AKIVVESQDEDKIQ-VRVDLTGDATQRVFDKVLTNLARSAPPIPGFR---REKGGNALYLGI 153 (163)
Q Consensus 96 fkV~v~s~dd~~Iq-iRVdlsG~~Tq~VFd~Vf~klvraAqPIPGFR---R~KGGKT~~IP~ 153 (163)
+.|+++.++.+.-+ |.|+ ++++|-.|..+++.|+--+..+.--|- ...+||.-.||.
T Consensus 28 IRVsvd~~~gnlYKSIllT-sqDrtp~VI~rAL~Khnl~~~~~~~y~LvQ~Lp~~kEL~IPd 88 (140)
T 3kh0_A 28 IRVSLDVDNGNMYKSILVT-SQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRKLKIPE 88 (140)
T ss_dssp EEEEEECSSSEEEEEEEEE-TTCBHHHHHHHHHHHTTCTTSCGGGEEEEEEEETTEEEECCT
T ss_pred EEEEEEcCCCcEEEEEEee-cccccHHHHHHHHHHhCCCCCchhceEEEEEcCCCCeEecCC
Confidence 34667665555555 4443 788999999999999998888755553 445778888885
No 17
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.68 E-value=60 Score=20.92 Aligned_cols=34 Identities=15% Similarity=0.317 Sum_probs=24.7
Q ss_pred CCeEEEEEEecChhhHHHHHHHHHHh-hhcCCCCCCce
Q 031255 105 EDKIQVRVDLTGDATQRVFDKVLTNL-ARSAPPIPGFR 141 (163)
Q Consensus 105 d~~IqiRVdlsG~~Tq~VFd~Vf~kl-vraAqPIPGFR 141 (163)
++++ +...|..+..-+.+.+.++ ....+|+||++
T Consensus 86 ~G~~---~~~~G~~~~~~l~~~l~~~~~~~~~~~~~~~ 120 (126)
T 1x5e_A 86 DGEF---RRYQGPRTKKDFINFISDKEWKSIEPVSSWF 120 (126)
T ss_dssp TTEE---EECCSCCCHHHHHHHHHTCGGGGSCEECCCC
T ss_pred CCeE---EEeecCCCHHHHHHHHHHHhhccCCCchhhh
Confidence 4553 4678888777677666654 47899999987
No 18
>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.48 E-value=1.7e+02 Score=19.97 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=26.4
Q ss_pred cCCCeeeecCCCceeeeeeeEEEEEcCCCCeEEEEEEecCh
Q 031255 77 DSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGD 117 (163)
Q Consensus 77 ~SG~~~S~Td~~~sis~~dfkV~v~s~dd~~IqiRVdlsG~ 117 (163)
.+|+++++.|+++. -+.|+-...+.+..+|.|.+.|.
T Consensus 61 p~~~~~~v~d~~dG----ty~v~Y~p~~~G~y~I~V~~~g~ 97 (115)
T 2eea_A 61 PSKAEISCIDNKDG----TCTVTYLPTLPGDYSILVKYNDK 97 (115)
T ss_dssp SSCCEECCBCCSSS----EEEEEEECSSCSCEEEEEEESSS
T ss_pred CCCceEEEEECCCC----EEEEEEEeCCCeeEEEEEEECCE
Confidence 35677788887762 14455667888999999998874
No 19
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Probab=21.06 E-value=1.5e+02 Score=19.55 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=26.2
Q ss_pred cCCCeeeecCCCceeeeeeeEEEEEcCCCCeEEEEEEecC
Q 031255 77 DSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTG 116 (163)
Q Consensus 77 ~SG~~~S~Td~~~sis~~dfkV~v~s~dd~~IqiRVdlsG 116 (163)
.+++++++.|+++. -+.|+-...+.+..+|.|.+.|
T Consensus 46 p~~~~~~v~d~~dG----ty~v~Y~p~~~G~y~i~V~~~g 81 (97)
T 2bp3_A 46 PSKAEISCTDNQDG----TCSVSYLPVLPGDYSILVKYNE 81 (97)
T ss_dssp SSCCEEEEEECSSS----EEEEEEECSSCEEEEEEEEETT
T ss_pred CCCCEEEEEECCCC----EEEEEEEeCCCCcEEEEEEECC
Confidence 46778888888772 1344456678899999999877
No 20
>2p3p_A Hypothetical protein; MCSG, MAD, PSI-2, structure genomics, singleton, PG_1388, structural genomics, protein structure initiative; 1.76A {Porphyromonas gingivalis W83} SCOP: d.383.1.1
Probab=20.49 E-value=47 Score=27.08 Aligned_cols=23 Identities=26% Similarity=0.493 Sum_probs=19.8
Q ss_pred ceeeeeeeeCCCCCceeEEeeec
Q 031255 24 RSCRNYTLCHPNAPKSVNFFHFQ 46 (163)
Q Consensus 24 r~c~~h~l~~pna~~~~~f~~~~ 46 (163)
--|.+++.|.|-+.|+|+|+--.
T Consensus 91 viCvV~T~~~P~~dS~I~FYttd 113 (207)
T 2p3p_A 91 VICVVTTVLHPVADSRIDFYTTE 113 (207)
T ss_dssp EEEEEEEECSSSCEEEEEEEETT
T ss_pred EEEEEEEecCccccceEEEecCC
Confidence 35999999999999999998743
No 21
>2pn2_A Uncharacterized protein; putative osmotic stress induced and detoxification response structural genomics; 1.95A {Psychrobacter arcticus} SCOP: d.227.1.1
Probab=20.34 E-value=83 Score=22.91 Aligned_cols=38 Identities=5% Similarity=0.210 Sum_probs=25.4
Q ss_pred eeeeeeEEEEEcC--CC----CeEEEEEEecChhhHHHHHHHHH
Q 031255 91 ITVKDAKIVVESQ--DE----DKIQVRVDLTGDATQRVFDKVLT 128 (163)
Q Consensus 91 is~~dfkV~v~s~--dd----~~IqiRVdlsG~~Tq~VFd~Vf~ 128 (163)
+.++++.|.|+-+ ++ .+|.++|.|+|..++.-++++..
T Consensus 86 i~~~~~~v~v~~~~~~~~~~~~~i~l~v~l~g~~~~e~~~~l~~ 129 (155)
T 2pn2_A 86 IDIAGTTAEVTKVMAADPRRVSEVHIAITFNQELDDKTQKIFYN 129 (155)
T ss_dssp CCCTTCEEEEEEEEETTTTEEEEEEEEEECSSCCCHHHHHHHHH
T ss_pred CCeeEEEEEEEEEEcCCCCcEEEEEEEEEECCCCCHHHHHHHHH
Confidence 4455666666653 22 36889999999888877766544
Done!