BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031256
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 216 bits (551), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 96/152 (63%), Positives = 120/152 (78%)
Query: 8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
PP V LETSMG +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++Q
Sbjct: 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
SIYG FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP LDGKHTIFG
Sbjct: 71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130
Query: 128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT 159
RVC+G+ ++ R+G V+T+ DRP+ DVKI++
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 216 bits (550), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 96/152 (63%), Positives = 120/152 (78%)
Query: 8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
PP V LETSMG +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++Q
Sbjct: 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
SIYG FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP LDGKHTIFG
Sbjct: 71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130
Query: 128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT 159
RVC+G+ ++ R+G V+T+ DRP+ DVKI++
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 216 bits (549), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 96/152 (63%), Positives = 120/152 (78%)
Query: 8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
PP V LETSMG +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++Q
Sbjct: 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
SIYG FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP LDGKHTIFG
Sbjct: 71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130
Query: 128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT 159
RVC+G+ ++ R+G V+T+ DRP+ DVKI++
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 186 bits (473), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 107/151 (70%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
+T+ T++G F VELY+ HSP+TC NF L G+Y+N+ FHR+I +F++Q
Sbjct: 41 ITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKG 100
Query: 71 XXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
SIYG FEDEI ELKHTGAGILSM+N GPNTN SQFFITLAP HLDGKHTIF RV
Sbjct: 101 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVS 160
Query: 131 RGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
+ M I+ + SVQT ++PI D+KILRTS
Sbjct: 161 KNMTCIENIASVQTTATNKPIFDLKILRTST 191
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 98/162 (60%), Gaps = 5/162 (3%)
Query: 6 DGPPEVT----LETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQX 61
+GP V+ + TSMG +L+ P+T NF SR GYYN FHRIIK F++Q
Sbjct: 15 EGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQT 74
Query: 62 XXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SI+G FEDE L+H LSMANAG NTNGSQFFIT+ P LD
Sbjct: 75 GDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDN 134
Query: 122 KHTIFGRVCRGMEVIKRLGSVQTD-KDDRPIHDVKILRTSVK 162
KHT+FGRV +GMEV++R+ +V+ + K D+P DV I+ +VK
Sbjct: 135 KHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 176
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 96/156 (61%)
Query: 8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
P + T+MG + L+YK +T +NF+ S GYYNN FHR+IK F+VQ
Sbjct: 5 PKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGD 64
Query: 68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
SI+G+ FEDE L H+ ++SMAN GPNTNGSQFFIT P LD KHT+FG
Sbjct: 65 GTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFG 124
Query: 128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
+V +G +++ + V+TDK D+P+ D+KIL + +
Sbjct: 125 KVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKINN 160
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 140 bits (353), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
V L T+ G +EL+ +P+TC NF L ++ YY+ + FHR I++F++Q
Sbjct: 22 VRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTG 81
Query: 71 XXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
S +G F+DE +P L HTG GILSMAN+GPN+N SQFFIT ++LD KHTIFGRV
Sbjct: 82 GESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVV 141
Query: 131 RGMEVIKRLGSVQTD-KDDRPIHDVKILRTSV 161
G +V+ + +V++D K DRP +++I T+V
Sbjct: 142 GGFDVLTAMENVESDPKTDRPKEEIRIDATTV 173
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 133 bits (334), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXX 65
DG VTL T +G +E++ + +P+TC NF L YYN FHR IK F+VQ
Sbjct: 4 DGGMSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPT 63
Query: 66 XXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTI 125
SI+G FEDE LKH G++SMAN GPNTNGSQFFIT HLD K+T+
Sbjct: 64 GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 123
Query: 126 FGRVCRGMEVIKRLGSVQ-TDKDDRPIHDVKI 156
FG+V G+E + L + +K RP++DV I
Sbjct: 124 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHI 155
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
VTL T +G +E++ + +P+TC NF L YYN FHR IK F+VQ
Sbjct: 3 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 62
Query: 71 XXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
SI+G FEDE LKH G++SMAN GPNTNGSQFFIT HLD K+T+FG+V
Sbjct: 63 GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI 122
Query: 131 RGMEVIKRLGSVQT-DKDDRPIHDVKI 156
G+E + L + +K RP++DV I
Sbjct: 123 DGLETLDELEKLPVNEKTYRPLNDVHI 149
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 88/150 (58%), Gaps = 4/150 (2%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
V + T+ G EL+ P+ C+NF LS GYY N+ FH+ IK FI+Q
Sbjct: 19 VRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKG 78
Query: 71 XXSIYGHVFEDEIKPELKHTGAGILSMANAG----PNTNGSQFFITLAPASHLDGKHTIF 126
SIYG F+DEI PELK+ GILSMA+ G PNTNGSQFFIT + L+G++ IF
Sbjct: 79 GESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIF 138
Query: 127 GRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
G++ G E + L + +DK +PI ++ I
Sbjct: 139 GKLIDGFETLNTLENCPSDKSHKPIDEIII 168
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 91/147 (61%), Gaps = 5/147 (3%)
Query: 14 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXX 69
+ +G L+ K P+T NF L+ +G+ Y NSKFHR+IKDF++Q
Sbjct: 26 DEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGT 85
Query: 70 XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
SIYG F DE +LKH G G +SMANAG +TNGSQFFIT + LDGKH +FG+V
Sbjct: 86 GGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKV 144
Query: 130 CRGMEVIKRLGSVQTDKDDRPIHDVKI 156
GMEV++++ S +TD D+P+ DV I
Sbjct: 145 LEGMEVVRKVESTKTDSRDKPLKDVII 171
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 91/147 (61%), Gaps = 5/147 (3%)
Query: 14 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXX 69
+ +G L+ K P+T NF L+ +G+ Y NSKFHR+IKDF++Q
Sbjct: 16 DEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGT 75
Query: 70 XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
SIYG F DE +LKH G G +SMANAG +TNGSQFFIT + LDGKH +FG+V
Sbjct: 76 GGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKV 134
Query: 130 CRGMEVIKRLGSVQTDKDDRPIHDVKI 156
GMEV++++ S +TD D+P+ DV I
Sbjct: 135 LEGMEVVRKVESTKTDSRDKPLKDVII 161
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 92/147 (62%), Gaps = 5/147 (3%)
Query: 14 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXX 69
+ +G + L+ K P+T NF L+ +G+ Y +SKFHR+IKDF++Q
Sbjct: 23 DEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGT 82
Query: 70 XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
SIYG F DE +LKH G G +SMANAG +TNGSQFFIT + LDGKH +FG+V
Sbjct: 83 GGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKV 141
Query: 130 CRGMEVIKRLGSVQTDKDDRPIHDVKI 156
GMEV++++ + +TD D+P+ DV I
Sbjct: 142 LEGMEVVRKVETTKTDGRDKPLKDVTI 168
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 92/147 (62%), Gaps = 5/147 (3%)
Query: 14 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXX 69
+ +G + L+ K P+T NF L+ +G+ Y +SKFHR+IKDF++Q
Sbjct: 23 DEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGT 82
Query: 70 XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
SIYG F DE +LKH G G +SMANAG +TNGSQFFIT + LDGKH +FG+V
Sbjct: 83 GGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKV 141
Query: 130 CRGMEVIKRLGSVQTDKDDRPIHDVKI 156
GMEV++++ + +TD D+P+ DV I
Sbjct: 142 LEGMEVVRKVETTKTDGRDKPLKDVTI 168
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 14 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXX-XX 69
+ +G + L+ K P+T NF L+ +GY Y SKFHR+IKDF++Q
Sbjct: 26 DKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGDGT 85
Query: 70 XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
SIYG F DE +LKH G G +SMANAGP+TNGSQFFITL + LDGKH +FG+V
Sbjct: 86 GGVSIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKV 144
Query: 130 CRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
GM V+ + TD DRP+ + I+ + D
Sbjct: 145 IDGMTVVHSIELQATDGHDRPLTNCSIINSGKID 178
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 91/159 (57%), Gaps = 6/159 (3%)
Query: 8 PP---EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXX 64
PP +V L+T+ G +EL+ K +P+ CRNF +L YY+N+ FHR++ FIVQ
Sbjct: 21 PPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDP 80
Query: 65 XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHT 124
SIYG F+DE L+ G+++MANAG + NGSQFF TL A L+ KHT
Sbjct: 81 TGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHT 140
Query: 125 IFGRVCRGMEV--IKRLGSVQTDKDDRPIHDVKILRTSV 161
IFG+V G V + RL V D D+RP + KI V
Sbjct: 141 IFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKSCEV 178
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 119 bits (298), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 88/154 (57%), Gaps = 5/154 (3%)
Query: 14 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXX 69
+ +G + L+ P+T NF L+ +GY Y S FHR+IKDF++Q
Sbjct: 18 DKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGT 77
Query: 70 XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
SIYG F DE +LKH G G +SMANAGP+TNGSQFFITL + LDGKH +FG+V
Sbjct: 78 GGMSIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKV 136
Query: 130 CRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
GM V+ + TD DRP+ D I+ + D
Sbjct: 137 LDGMTVVHSIELQATDGHDRPLTDCTIVNSGKID 170
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 90/148 (60%), Gaps = 6/148 (4%)
Query: 17 MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G T+ L+ K +P T NF +L G+ Y +S FHR+I++F++Q
Sbjct: 25 LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG F DE +KH G LSMANAGPNTNGSQFFIT AP LDG+H +FG+V G
Sbjct: 85 SIYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDG 142
Query: 133 MEVIKRLGSVQTDKDDRPIHDVKILRTS 160
M+V+ R+ +T+ DRP+ VKI+ +
Sbjct: 143 MDVVLRIEKTKTNSHDRPVKPVKIVASG 170
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 89/148 (60%), Gaps = 6/148 (4%)
Query: 17 MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G T+ L+ K +P T NF +L G+ Y +S FHR+I++F++Q
Sbjct: 25 LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG F DE +KH G LSMANAGPNTNGSQFFIT AP LDG H +FG+V G
Sbjct: 85 SIYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLDG 142
Query: 133 MEVIKRLGSVQTDKDDRPIHDVKILRTS 160
M+V+ R+ +T+ DRP+ VKI+ +
Sbjct: 143 MDVVLRIEKTKTNSHDRPVKPVKIVASG 170
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 85/144 (59%), Gaps = 5/144 (3%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELSRRGY---YNNSKFHRIIKDFIVQXXX-XXXXXXXXX 72
+G + L+ K P+T NF EL+++ Y SKFHR+I DF++Q
Sbjct: 20 IGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGR 79
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG F DE +LKH GAG LSMANAG +TNGSQFFIT LDG+H +FG++ G
Sbjct: 80 SIYGEKFADE-NFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEG 138
Query: 133 MEVIKRLGSVQTDKDDRPIHDVKI 156
M+V++++ + DRP DV I
Sbjct: 139 MDVVRKIEQTEKLPGDRPKQDVII 162
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 115 bits (289), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 95/161 (59%), Gaps = 14/161 (8%)
Query: 10 EVTLETSM-GSFTVELYYKHSPRTCRNFAEL-----------SRRGYYNNSKFHRIIKDF 57
+VT++ ++ G +ELY +PRTC NF L + +Y S FHR+IK+F
Sbjct: 12 DVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNF 71
Query: 58 IVQXXX-XXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPA 116
++Q SIYG +F+DE + +KH ++SMAN GPNTNGSQFFIT PA
Sbjct: 72 MIQGGDFTKGDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPA 130
Query: 117 SHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 157
HL+ H +FG+V G EV+ ++ ++T+ +RP+ DV IL
Sbjct: 131 PHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVIL 171
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 89/144 (61%), Gaps = 6/144 (4%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G + L+ P+T NF +L+ G+ Y S FHR+I++F++Q
Sbjct: 19 VGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGK 78
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG F+DE ++KH G +SMANAGPN+NGSQFF+T AP LDG+H +FG+V G
Sbjct: 79 SIYGTRFDDE-NLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEG 136
Query: 133 MEVIKRLGSVQTDKDDRPIHDVKI 156
M+V+K++ + +T +D+P VKI
Sbjct: 137 MDVVKKVENTKTGLNDKPKKAVKI 160
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 88/157 (56%), Gaps = 13/157 (8%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS-----------RRGYYNNSKFHRIIKDFIVQXX-XX 64
+G +L+ P+TC+NF L ++ Y S FHR++K+F++Q
Sbjct: 33 VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFS 92
Query: 65 XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHT 124
SIYG F+DE LKH A +LSMAN G +TNGSQFFIT PA HLDG H
Sbjct: 93 EGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHV 151
Query: 125 IFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
+FG V G EVI+++ +++TD RP DV+++ V
Sbjct: 152 VFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGV 188
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/132 (50%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTHHNGTGGK 75
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDGKH +FG+V G
Sbjct: 76 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 134
Query: 133 M---EVIKRLGS 141
M E +KR GS
Sbjct: 135 MNIVEAMKRFGS 146
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 84/152 (55%), Gaps = 13/152 (8%)
Query: 18 GSFTVELYYKHSPRTCRNFAELS--RRG---------YYNNSKFHRIIKDFIVQXX-XXX 65
G EL+ P+TC NF L +G +Y + FHR++KDF+VQ
Sbjct: 41 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 100
Query: 66 XXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTI 125
SIYG FEDE +KH A +LSMAN G +TNGSQFFIT P HLDG H +
Sbjct: 101 GNGRGGESIYGGFFEDE-SFAVKHNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVV 159
Query: 126 FGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 157
FG+V G EV++ + + +TD +P +V+IL
Sbjct: 160 FGQVISGQEVVREIENQKTDAASKPFAEVRIL 191
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 80/143 (55%), Gaps = 15/143 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 13 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 63 XXX-XXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 66 NFTHCNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 122 KHTIFGRVCRGM---EVIKRLGS 141
KH +FG+V GM E ++R GS
Sbjct: 125 KHVVFGKVKEGMNIVEAMERFGS 147
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDGKH +FG+V G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 133 M---EVIKRLGS 141
M E ++R GS
Sbjct: 136 MNIVEAMERFGS 147
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDGKH +FG+V G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 133 M---EVIKRLGS 141
M E ++R GS
Sbjct: 136 MNIVEAMERFGS 147
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDGKH +FG+V G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 133 M---EVIKRLGS 141
M E ++R GS
Sbjct: 136 MNIVEAMERFGS 147
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 75
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDGKH +FG+V G
Sbjct: 76 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 134
Query: 133 M---EVIKRLGS 141
M E ++R GS
Sbjct: 135 MNIVEAMERFGS 146
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 25 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 84
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDGKH +FG+V G
Sbjct: 85 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 143
Query: 133 M---EVIKRLGS 141
M E ++R GS
Sbjct: 144 MNIVEAMERFGS 155
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 80/143 (55%), Gaps = 15/143 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 32 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 84
Query: 63 XXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 85 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 143
Query: 122 KHTIFGRVCRGM---EVIKRLGS 141
KH +FG+V GM E ++R GS
Sbjct: 144 KHVVFGKVKEGMNIVEAMERFGS 166
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 80/143 (55%), Gaps = 15/143 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 13 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 63 XXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 66 NFTHHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 122 KHTIFGRVCRGM---EVIKRLGS 141
KH +FG+V GM E ++R GS
Sbjct: 125 KHVVFGKVKEGMNIVEAMERFGS 147
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 75/135 (55%), Gaps = 11/135 (8%)
Query: 15 TSMGSFTVELYYKHSPRTCRNFAELS------RRG---YYNNSKFHRIIKDFIVQXX-XX 64
++ G EL+ +PRTC NF L RG +Y NS FHRII F+ Q
Sbjct: 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74
Query: 65 XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHT 124
SIYG F DE +KH G+LSMANAGPNTN SQFFITL P LDGKH
Sbjct: 75 NGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHV 133
Query: 125 IFGRVCRGMEVIKRL 139
+FG+V GM V++ +
Sbjct: 134 VFGKVIEGMNVVREM 148
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/132 (49%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG FEDE LKHTG GIL+MANAGPNTNGSQFFI A LDGKH +FG+V G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 133 M---EVIKRLGS 141
M E ++R GS
Sbjct: 136 MNIVEAMERFGS 147
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/132 (49%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G + EL+ P+T NF LS +G+ Y S FH+II F+ Q
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGGDFTRHNGTGGK 76
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDGKH +FG+V G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 133 M---EVIKRLGS 141
M E ++R GS
Sbjct: 136 MNIVEAMERFGS 147
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 76/132 (57%), Gaps = 8/132 (6%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 75
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDGKH +FG V G
Sbjct: 76 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEG 134
Query: 133 M---EVIKRLGS 141
M E ++R GS
Sbjct: 135 MNIVEAMERFGS 146
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 83/152 (54%), Gaps = 13/152 (8%)
Query: 18 GSFTVELYYKHSPRTCRNFAELS--RRG---------YYNNSKFHRIIKDFIVQXXX-XX 65
G EL+ P+TC NF L +G +Y + FHR++KDF+VQ
Sbjct: 24 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 83
Query: 66 XXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTI 125
SIYG FEDE +KH +LSMAN G +TNGSQFFIT P HLDG H +
Sbjct: 84 GNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVV 142
Query: 126 FGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 157
FG+V G EV++ + + +TD +P +V+IL
Sbjct: 143 FGQVISGQEVVREIENQKTDAASKPFAEVRIL 174
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/132 (49%), Positives = 76/132 (57%), Gaps = 8/132 (6%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG H +FG+V G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEG 135
Query: 133 M---EVIKRLGS 141
M E ++R GS
Sbjct: 136 MNIVEAMERFGS 147
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 83/152 (54%), Gaps = 13/152 (8%)
Query: 18 GSFTVELYYKHSPRTCRNFAELS--RRG---------YYNNSKFHRIIKDFIVQXXX-XX 65
G EL+ P+TC NF L +G +Y + FHR++KDF+VQ
Sbjct: 24 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFSE 83
Query: 66 XXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTI 125
SIYG FEDE +KH +LSMAN G +TNGSQFFIT P HLDG H +
Sbjct: 84 GNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVV 142
Query: 126 FGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 157
FG+V G EV++ + + +TD +P +V+IL
Sbjct: 143 FGQVISGQEVVREIENQKTDAASKPFAEVRIL 174
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/132 (49%), Positives = 76/132 (57%), Gaps = 8/132 (6%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG H +FG+V G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEG 135
Query: 133 M---EVIKRLGS 141
M E ++R GS
Sbjct: 136 MNIVEAMERFGS 147
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 74/135 (54%), Gaps = 11/135 (8%)
Query: 15 TSMGSFTVELYYKHSPRTCRNFAELS------RRG---YYNNSKFHRIIKDFIVQXX-XX 64
++ G EL+ +PRTC NF L RG +Y NS FHRII F+ Q
Sbjct: 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74
Query: 65 XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHT 124
SIYG F DE +KH G+LSMANAGPNTN SQF ITL P LDGKH
Sbjct: 75 NGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDGKHV 133
Query: 125 IFGRVCRGMEVIKRL 139
+FG+V GM V++ +
Sbjct: 134 VFGKVIEGMNVVREM 148
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 79/126 (62%), Gaps = 5/126 (3%)
Query: 18 GSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXXS 73
G +LY + P+T +NF EL+ + G+ Y +S FHR+I F++Q S
Sbjct: 17 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 76
Query: 74 IYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGM 133
IYG F DE ++KHT G+LSMANAG NTNGSQFFIT P S LDGKH +FG V G+
Sbjct: 77 IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGL 135
Query: 134 EVIKRL 139
++++++
Sbjct: 136 DIVRKV 141
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 82/150 (54%), Gaps = 13/150 (8%)
Query: 18 GSFTVELYYKHSPRTCRNFAEL-------SRRG---YYNNSKFHRIIKDFIVQXXX-XXX 66
G +ELY P+T NF L + G ++ SKFHRII +F++Q
Sbjct: 18 GRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRG 77
Query: 67 XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIF 126
SIYG F DE E KHTG G+LSMANAGPNTNGSQFF+ LDGKH +F
Sbjct: 78 NGTGGESIYGEKFPDENFKE-KHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVF 136
Query: 127 GRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
GRV G++V+K + S + +P+ D I
Sbjct: 137 GRVVEGLDVVKAVES-NGSQSGKPVKDCMI 165
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 106 bits (264), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 79/126 (62%), Gaps = 5/126 (3%)
Query: 18 GSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXXS 73
G +LY + P+T +NF EL+ + G+ Y +S FHR+I F++Q S
Sbjct: 18 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 77
Query: 74 IYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGM 133
IYG F DE ++KHT G+LSMANAG NTNGSQFFIT P S LDGKH +FG V G+
Sbjct: 78 IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGL 136
Query: 134 EVIKRL 139
++++++
Sbjct: 137 DIVRKV 142
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 79/143 (55%), Gaps = 15/143 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 17 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 69
Query: 63 -XXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 70 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDG 128
Query: 122 KHTIFGRVCRGM---EVIKRLGS 141
H +FG+V GM E ++R GS
Sbjct: 129 XHVVFGKVKEGMNIVEAMERFGS 151
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 76/137 (55%), Gaps = 7/137 (5%)
Query: 9 PEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGY---YNNSKFHRIIKDFIVQXXX-X 64
P T ET +G L+ K P+T +NF EL +R Y S FHRII +F++Q
Sbjct: 13 PVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFT 72
Query: 65 XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHT 124
SIYG F DE KH GILSMANAGPNTNGSQFFIT A S LDGKH
Sbjct: 73 RGNGTGGRSIYGDKFADE-NFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHV 131
Query: 125 IFGRVC--RGMEVIKRL 139
+FG V + V+K +
Sbjct: 132 VFGEVADEKSYSVVKEI 148
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 79/134 (58%), Gaps = 5/134 (3%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G T+EL+ PRT NF L +G+ + NS FHR+I DF+ Q
Sbjct: 20 LGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQ 79
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG FEDE ++KHTG G+LSMAN G NTN SQF ITL A HLD KH +FG V G
Sbjct: 80 SIYGDKFEDE-NFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDG 138
Query: 133 MEVIKRLGSVQTDK 146
M+ +K++ S + K
Sbjct: 139 MDTVKKIESFGSPK 152
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 83/154 (53%), Gaps = 21/154 (13%)
Query: 9 PEVTLETSM-----GSFTVELYYKHSPRTCRNFAEL-------SRRG---YYNNSKFHRI 53
P+V + S+ G +ELY P+T NF L R G +Y +S FHR+
Sbjct: 8 PKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRV 67
Query: 54 IKDFIVQXXX-XXXXXXXXXSIYGHVFEDEI--KPELKHTGAGILSMANAGPNTNGSQFF 110
I +F++Q SIYG F DE +HTG G LSMANAGPNTNGSQFF
Sbjct: 68 IPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFF 127
Query: 111 ITLAPASHLDGKHTIFGRVCRGMEVIK---RLGS 141
I A LDGKH +FGRV G++V+K RLGS
Sbjct: 128 ICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGS 161
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 17 MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXX-XXXXXXXXXX 72
+G+ +L+ P+T NF L +G+ Y S FHR+I DF++Q
Sbjct: 15 LGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGK 74
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG F DE +LKH G+LSMANAGPNTNGSQFFIT S LDGKH +FG V G
Sbjct: 75 SIYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDG 133
Query: 133 MEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
M V+K + + +P ++I + V
Sbjct: 134 MNVVKAI-EAEGSGSGKPRSRIEIAKCGV 161
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 18 GSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXXXXXS 73
G +EL PRT NF L RG+ Y+N FHR+I F+ Q S
Sbjct: 25 GRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKS 84
Query: 74 IYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGM 133
IYG F+DE +L+H G G+LSMAN+GPNTNGSQFFI LDGKH +FGRV G
Sbjct: 85 IYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQ 143
Query: 134 EVIKRLGSV 142
V+K++ SV
Sbjct: 144 NVVKKMESV 152
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 80/146 (54%), Gaps = 14/146 (9%)
Query: 17 MGSFTVELYYKHSPRTCRNFAEL--SRRG---------YYNNSKFHRIIKDFIVQXXX-X 64
+G +EL+ P+T NF L +G ++ FHRIIK F++Q
Sbjct: 29 VGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFS 88
Query: 65 XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHT 124
SIYG FEDE KH G+LSMANAG NTNGSQFFIT P HLDGKH
Sbjct: 89 NQNGTGGESIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHV 147
Query: 125 IFGRVCRGMEVIKRLGSVQTDKDDRP 150
+FG+V +GM V K L +V+ K ++P
Sbjct: 148 VFGQVIKGMGVAKILENVEV-KGEKP 172
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 74/132 (56%), Gaps = 8/132 (6%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G + EL+ P+T NF LS +G+ Y S FHRII F Q
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGGDFTRHNGTGGK 75
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG FEDE LKHTG GILS ANAGPNTNGSQFFI A LDGKH +FG+V G
Sbjct: 76 SIYGEKFEDE-NFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 134
Query: 133 ---MEVIKRLGS 141
+E +R GS
Sbjct: 135 XNIVEAXERFGS 146
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 77/144 (53%), Gaps = 10/144 (6%)
Query: 7 GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFI 58
G P V L+ +G +EL P+T NF L +G+ Y S FHR+I F+
Sbjct: 2 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFM 61
Query: 59 VQXXXXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPAS 117
Q SIYG F DE LKH G G+LSMANAGPNTNGSQFFI
Sbjct: 62 CQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 120
Query: 118 HLDGKHTIFGRVCRGMEVIKRLGS 141
LDGKH +FG V GM+V+K++ S
Sbjct: 121 WLDGKHVVFGHVIEGMDVVKKIES 144
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 77/144 (53%), Gaps = 10/144 (6%)
Query: 7 GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFI 58
G P V L+ +G +EL P+T NF L +G+ Y S FHR+I F+
Sbjct: 3 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFM 62
Query: 59 VQXXXXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPAS 117
Q SIYG F DE LKH G G+LSMANAGPNTNGSQFFI
Sbjct: 63 CQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 121
Query: 118 HLDGKHTIFGRVCRGMEVIKRLGS 141
LDGKH +FG V GM+V+K++ S
Sbjct: 122 WLDGKHVVFGHVIEGMDVVKKIES 145
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 77/144 (53%), Gaps = 10/144 (6%)
Query: 7 GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFI 58
G P V L+ +G +EL P+T NF L +G+ Y S FHR+I F+
Sbjct: 1 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFM 60
Query: 59 VQXXXXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPAS 117
Q SIYG F DE LKH G G+LSMANAGPNTNGSQFFI
Sbjct: 61 CQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 119
Query: 118 HLDGKHTIFGRVCRGMEVIKRLGS 141
LDGKH +FG V GM+V+K++ S
Sbjct: 120 WLDGKHVVFGHVIEGMDVVKKIES 143
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 77/144 (53%), Gaps = 10/144 (6%)
Query: 7 GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFI 58
G P V L+ +G +EL P+T NF L +G+ Y S FHR+I F+
Sbjct: 2 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFM 61
Query: 59 VQXXXXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPAS 117
Q SIYG F DE LKH G G+LSMANAGPNTNGSQFFI
Sbjct: 62 CQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 120
Query: 118 HLDGKHTIFGRVCRGMEVIKRLGS 141
LDGKH +FG V GM+V+K++ S
Sbjct: 121 WLDGKHVVFGHVIEGMDVVKKIES 144
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 82/143 (57%), Gaps = 10/143 (6%)
Query: 17 MGSFTVELYYKHSPRTCRNF-----AELSRRGY---YNNSKFHRIIKDFIVQXXXXXXX- 67
+G +EL+ P+T NF E + G Y S FHR+IKDF++Q
Sbjct: 24 VGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGD 83
Query: 68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
SIY F DE +L+H+ G+LSMAN+GP+TNG QFFIT + LDGKH +FG
Sbjct: 84 GTGVASIYRGPFADE-NFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFG 142
Query: 128 RVCRGMEVIKRLGSVQTDKDDRP 150
++ G+ V++++ +V T +++P
Sbjct: 143 KIIDGLLVMRKIENVPTGPNNKP 165
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
Query: 14 ETSMGSFTVELYYKHSPRTCRNFAELSRRGY---YNNSKFHRIIKDFIVQXXXXXX-XXX 69
E S+G ++L P+T +NF L R Y S FHRII F+VQ
Sbjct: 38 EESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGT 97
Query: 70 XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
SIYG F DE ELKHT GILSMAN G +TNGSQFFITL LD KH +FG V
Sbjct: 98 GGRSIYGEKFPDE-NFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEV 156
Query: 130 CRGMEVIKRL 139
GM+V+ ++
Sbjct: 157 VEGMDVVHKI 166
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 80/159 (50%), Gaps = 13/159 (8%)
Query: 14 ETSMGSFTVELYYKHSPRTCRNFAEL--SRRGY--------YNNSKFHRIIKDFIVQXXX 63
+T G T+EL+ P T NF L +G Y S FHRII F++Q
Sbjct: 30 QTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGD 89
Query: 64 XXXX-XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGK 122
SIYG F DE H +LSMANAGPNTNGSQFFIT P LDGK
Sbjct: 90 FTRGDGTGGESIYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGK 148
Query: 123 HTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
H +FG+V GMEV+K + + ++ +P V I + V
Sbjct: 149 HVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASGV 186
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 99.4 bits (246), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 30 PRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXXSIYGHVFEDEIKP 85
P T NF L +G+ + S FHRII F+ Q SIYG F+DE
Sbjct: 38 PMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDE-NF 96
Query: 86 ELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTD 145
LKHTG G+LSMAN+GPNTNGSQFF+T LDGKH +FG V G++V++++ Q
Sbjct: 97 ILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI-EAQGS 155
Query: 146 KDDRPIHDVKI 156
KD +P V I
Sbjct: 156 KDGKPKQKVII 166
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 99.4 bits (246), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 30 PRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXXSIYGHVFEDEIKP 85
P T NF L +G+ + S FHRII F+ Q SIYG F+DE
Sbjct: 30 PMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDE-NF 88
Query: 86 ELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTD 145
LKHTG G+LSMAN+GPNTNGSQFF+T LDGKH +FG V G++V++++ Q
Sbjct: 89 ILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI-EAQGS 147
Query: 146 KDDRPIHDVKI 156
KD +P V I
Sbjct: 148 KDGKPKQKVII 158
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 99.0 bits (245), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 12/142 (8%)
Query: 15 TSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQX--------XXXXX 66
T+ GS +EL+ +PR C +F L Y++++ FHR I++F++Q
Sbjct: 13 TTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72
Query: 67 XXXXXXSIYGHV----FEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGK 122
SI G FEDE L H G G+LSMAN G ++N S+FFIT HL+ K
Sbjct: 73 VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNK 132
Query: 123 HTIFGRVCRGMEVIKRLGSVQT 144
HTIFGRV G++V+++ ++T
Sbjct: 133 HTIFGRVVGGLDVLRQWEKLET 154
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 17 MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXXX-XXXXXXXXX 72
+G +LY P+T NF L +G+ Y S FHR+I DF++Q
Sbjct: 15 IGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGK 74
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
SIYG F DE + H G+LSMANAGPNTNGSQFFIT P LDGKH +FG V G
Sbjct: 75 SIYGGKFPDE-NFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDG 133
Query: 133 MEVIKRLGSVQT 144
+++K++ S+ +
Sbjct: 134 YDIVKKVESLGS 145
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 20/163 (12%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRG---------------YYNNSKFHRIIK 55
TL T+ G + L+ H+P+T NF L++ +Y+ + FHR+I+
Sbjct: 26 ATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQ 85
Query: 56 DFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAP 115
F++Q + F DE PEL+ +L+MANAGP TNGSQFFIT+
Sbjct: 86 GFMIQGGDPTGTGRGGPG---YKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGK 142
Query: 116 ASHLDGKHTIFGRV--CRGMEVIKRLGSVQTDKDDRPIHDVKI 156
HL+ +HTIFG V V++ + TD +DRP V I
Sbjct: 143 TPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 22/176 (12%)
Query: 10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXX--XXXXX 67
+V L TS+G VEL+ + P CRNF +L GYY N+ FHR++KDFIVQ
Sbjct: 23 KVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGR 82
Query: 68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPN--------------TNGSQFFITL 113
+ G F+ E P LK G++ +AN G + TNG+QFFITL
Sbjct: 83 GGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITL 142
Query: 114 APASHLDGKHTIFGRVC-RGMEVIKRLGSVQTDKDDRP-----IHDVKILRTSVKD 163
A A L+ +T+FG+V + + + ++ K+DRP I V +L +D
Sbjct: 143 ARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWNPFED 198
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 30 PRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXXSIYGHVFEDEIKP 85
P T NF L +G+ + S FHRII F Q SIYG F+DE
Sbjct: 39 PXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDE-NF 97
Query: 86 ELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTD 145
LKHTG G+LS AN+GPNTNGSQFF+T LDGKH +FG V G++V++++ Q
Sbjct: 98 ILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI-EAQGS 156
Query: 146 KDDRPIHDVKI 156
KD +P V I
Sbjct: 157 KDGKPKQKVII 167
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 10/122 (8%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELSRRGY--------YNNSKFHRIIKDFIVQXXXXXX-X 67
+G F EL+ P+T NF + Y Y N+ FHR+IK+F++Q
Sbjct: 73 LGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHN 132
Query: 68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
SIYG F+DE ++KH G+LSMAN+GPNTNG QFFIT LDGK+ +FG
Sbjct: 133 GSGSLSIYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFG 191
Query: 128 RV 129
R+
Sbjct: 192 RI 193
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 7 GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXX 66
G P V L TS G+ +EL + +P + +NF + G+YNN+ FHR+I F++Q
Sbjct: 3 GDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTE 62
Query: 67 XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD-GK--- 122
++E L++T I A ++ SQFFI +A + LD G+
Sbjct: 63 QMQQKKP--NPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 123 -HTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV 154
+ +FG+V +GM+V ++ V P HDV
Sbjct: 121 GYAVFGKVVKGMDVADKISQV-------PTHDV 146
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 7 GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXX 66
G P V L TS G+ +EL + +P + +NF + G+YNN+ FHR+I F++Q
Sbjct: 3 GDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTE 62
Query: 67 XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD-GK--- 122
++E L++T I A ++ SQFFI +A + LD G+
Sbjct: 63 QMQQKKP--NPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 123 -HTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV 154
+ +FG+V +GM+V ++ V P HDV
Sbjct: 121 GYAVFGKVVKGMDVADKISQV-------PTHDV 146
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 46/179 (25%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
+ L+T+ G+ T++L+ +P T NF + + G+Y+ + FHR+I F++Q
Sbjct: 2 IKLQTNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQ---------- 51
Query: 71 XXSIYGHVFEDEIKPELKHTGAGILSMANAG---------------PNTNGSQFFITL-- 113
G FE +K K T A I + AN G P++ +QFFI +
Sbjct: 52 -----GGGFEPGMKQ--KSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKD 104
Query: 114 -------APASHLDGKHTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKILRTSV 161
AP +H G + +FG V G +V+ R+ SV T D P+ DV I + +
Sbjct: 105 NAFLDHTAPTAHGWG-YAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVIIEKAEI 162
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 16/166 (9%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
VT T+ G ++ + +P T +NF + R G+YNN+ FHR+I F++Q
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 71 XXSIYGHVFEDEIKPELKHTGAGILSMA-NAGPNTNGSQFFITLAPASHLD--------G 121
+ ++E LK+T G L+MA P++ +QFFI + L+
Sbjct: 62 KAT--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGW 118
Query: 122 KHTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKILRTSVKD 163
+ +F V GM+V+ ++ V T + D P DV I +V +
Sbjct: 119 GYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE 164
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 16/166 (9%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
VT T+ G ++ + +P T +NF + R G+YNN+ FHR+I F++Q
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 71 XXSIYGHVFEDEIKPELKHTGAGILSMA-NAGPNTNGSQFFITLAPASHLD--------G 121
+ ++E LK+T G L+MA P++ +QFFI + L+
Sbjct: 62 KAT--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGW 118
Query: 122 KHTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKILRTSVKD 163
+ +F V GM+ + ++ V T + D P DV I +V +
Sbjct: 119 GYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE 164
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 44/178 (24%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
V L T+ G +EL +P+T NF ++G+Y+ + FHR+I F++Q
Sbjct: 6 VELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQ---------- 55
Query: 71 XXSIYGHVFEDEIKPELKHTGAGILSMANAG---------------PNTNGSQFFITLAP 115
G FE +K K T A I + AN G P++ +QFFI +
Sbjct: 56 -----GGGFEPGLK--QKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVND 108
Query: 116 ASHLD--------GKHTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKILRTSV 161
L+ + +FG+V G +++ ++ +V+T D P DV I + V
Sbjct: 109 NEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEKAVV 166
>pdb|3QVN|A Chain A, Crystal Structure Of Cytosolic Mnsod3 From Candida
Albicans
Length = 206
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 101 GPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSV 142
G +TN S F+ LAP S GKH G +++ + GSV
Sbjct: 75 GGHTNHSLFWKNLAPVSKGGGKHPDTSSAL-GKQIVAQYGSV 115
>pdb|3GYE|A Chain A, Didydroorotate Dehydrogenase From Leishmania Major
pdb|3GYE|B Chain B, Didydroorotate Dehydrogenase From Leishmania Major
pdb|3GZ3|A Chain A, Leishmania Major Dihydroorotate Dehydrogenase In Complex
Wit
pdb|3GZ3|B Chain B, Leishmania Major Dihydroorotate Dehydrogenase In Complex
Wit
pdb|4EF8|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With Phenyl Isothiocyanate
pdb|4EF8|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With Phenyl Isothiocyanate
pdb|4EF9|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 4-Nitrophenyl
Isothiocyanate
pdb|4EF9|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 4-Nitrophenyl
Isothiocyanate
Length = 354
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 82 EIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIF----GRVCR-GMEVI 136
E P ++ + S+ + G NG F++ A H GK +F G R +E+
Sbjct: 86 EGNPTPRYQALPLGSINSMGLPNNGFDFYLAYAAEQHDYGKKPLFLSMSGLSMRENVEMC 145
Query: 137 KRLGSVQTDK 146
KRL +V T+K
Sbjct: 146 KRLAAVATEK 155
>pdb|3MHU|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Nitroorotic Acid
pdb|3MHU|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Nitroorotic Acid
pdb|3MJY|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Aminoorotic Acid
pdb|3MJY|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Aminoorotic Acid
pdb|3TQ0|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|3TQ0|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase In Complex With Fumarate
Length = 346
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 82 EIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIF----GRVCR-GMEVI 136
E P ++ + S+ + G NG F++ A H GK +F G R +E+
Sbjct: 86 EGNPTPRYQALPLGSINSMGLPNNGFDFYLAYAAEQHDYGKKPLFLSMSGLSMRENVEMC 145
Query: 137 KRLGSVQTDK 146
KRL +V T+K
Sbjct: 146 KRLAAVATEK 155
>pdb|3TRO|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant D171a
pdb|3TRO|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant D171a
Length = 354
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 82 EIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIF----GRVCR-GMEVI 136
E P ++ + S+ + G NG F++ A H GK +F G R +E+
Sbjct: 86 EGNPTPRYQALPLGSINSMGLPNNGFDFYLAYAAEQHDYGKKPLFLSMSGLSMRENVEMC 145
Query: 137 KRLGSVQTDK 146
KRL +V T+K
Sbjct: 146 KRLAAVATEK 155
>pdb|3TJX|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant H174a
pdb|3TJX|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant H174a
Length = 354
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 82 EIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIF----GRVCR-GMEVI 136
E P ++ + S+ + G NG F++ A H GK +F G R +E+
Sbjct: 86 EGNPTPRYQALPLGSINSMGLPNNGFDFYLAYAAEQHDYGKKPLFLSMSGLSMRENVEMC 145
Query: 137 KRLGSVQTDK 146
KRL +V T+K
Sbjct: 146 KRLAAVATEK 155
>pdb|3C61|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
pdb|3C61|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
pdb|3C61|C Chain C, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
pdb|3C61|D Chain D, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
Length = 314
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 82 EIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIF----GRVCR-GMEVI 136
E P ++ + S+ + G NG F++ A H G+ +F G R +E+
Sbjct: 53 EGNPTPRYRALPLGSINSMGLPNNGFDFYLAYAAEQHDYGRKPLFLSMSGLSVRENVEMC 112
Query: 137 KRLGSVQTDK 146
KRL +V T+K
Sbjct: 113 KRLAAVATEK 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,845,769
Number of Sequences: 62578
Number of extensions: 178797
Number of successful extensions: 460
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 81
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)