Query 031256
Match_columns 163
No_of_seqs 158 out of 1044
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 11:31:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 4.8E-55 1E-59 347.6 14.2 161 1-162 1-178 (372)
2 KOG0881 Cyclophilin type pepti 100.0 6.7E-55 1.5E-59 300.9 10.5 163 1-163 1-164 (164)
3 cd01923 cyclophilin_RING cyclo 100.0 4.6E-52 9.9E-57 305.7 19.2 154 10-163 1-154 (159)
4 cd01928 Cyclophilin_PPIL3_like 100.0 7.3E-52 1.6E-56 302.8 18.7 152 10-161 2-153 (153)
5 cd01927 cyclophilin_WD40 cyclo 100.0 1.9E-51 4.1E-56 299.2 17.5 148 12-159 1-148 (148)
6 KOG0880 Peptidyl-prolyl cis-tr 100.0 8.8E-52 1.9E-56 304.7 15.7 159 4-163 35-203 (217)
7 cd01921 cyclophilin_RRM cyclop 100.0 1.9E-50 4E-55 299.1 18.4 152 12-163 1-160 (166)
8 cd01922 cyclophilin_SpCYP2_lik 100.0 2.3E-50 5E-55 292.8 17.2 146 12-158 1-146 (146)
9 cd01925 cyclophilin_CeCYP16-li 100.0 7.2E-50 1.6E-54 297.2 19.8 160 4-163 1-161 (171)
10 COG0652 PpiB Peptidyl-prolyl c 100.0 1E-49 2.3E-54 289.9 17.0 149 11-163 2-158 (158)
11 PLN03149 peptidyl-prolyl isome 100.0 1E-47 2.2E-52 288.7 19.3 156 6-162 16-186 (186)
12 KOG0879 U-snRNP-associated cyc 100.0 6.3E-49 1.4E-53 274.2 11.4 156 5-161 7-176 (177)
13 KOG0883 Cyclophilin type, U bo 100.0 8E-49 1.7E-53 313.5 13.4 157 6-162 275-431 (518)
14 KOG0882 Cyclophilin-related pe 100.0 7.7E-49 1.7E-53 318.5 12.4 154 8-161 404-557 (558)
15 PTZ00060 cyclophilin; Provisio 100.0 2.8E-47 6E-52 285.9 19.6 157 5-163 12-183 (183)
16 PRK10903 peptidyl-prolyl cis-t 100.0 6E-47 1.3E-51 285.3 19.4 156 5-163 25-190 (190)
17 PTZ00221 cyclophilin; Provisio 100.0 5.3E-47 1.2E-51 294.0 19.5 156 4-163 48-220 (249)
18 cd01926 cyclophilin_ABH_like c 100.0 7.9E-47 1.7E-51 279.3 18.3 150 9-160 1-164 (164)
19 PRK10791 peptidyl-prolyl cis-t 100.0 4.1E-46 8.9E-51 275.1 18.5 150 11-163 2-164 (164)
20 KOG0884 Similar to cyclophilin 100.0 1E-46 2.2E-51 259.0 11.8 152 10-161 2-154 (161)
21 cd01920 cyclophilin_EcCYP_like 100.0 6E-45 1.3E-49 266.9 16.9 144 13-159 2-155 (155)
22 KOG0885 Peptidyl-prolyl cis-tr 100.0 3E-45 6.5E-50 291.5 13.4 160 3-162 7-167 (439)
23 cd00317 cyclophilin cyclophili 100.0 3.6E-44 7.8E-49 260.1 17.2 146 12-158 1-146 (146)
24 KOG0111 Cyclophilin-type pepti 100.0 3E-44 6.6E-49 269.3 9.7 155 7-163 135-298 (298)
25 PF00160 Pro_isomerase: Cyclop 100.0 8.2E-43 1.8E-47 255.2 17.1 148 11-161 2-155 (155)
26 KOG0415 Predicted peptidyl pro 100.0 4.9E-42 1.1E-46 271.9 13.4 154 10-163 2-163 (479)
27 cd01924 cyclophilin_TLP40_like 100.0 3.6E-41 7.8E-46 251.2 16.3 129 14-142 3-165 (176)
28 KOG0865 Cyclophilin type pepti 100.0 7.2E-36 1.6E-40 219.0 8.6 154 7-162 2-167 (167)
29 KOG0882 Cyclophilin-related pe 98.6 3.5E-08 7.6E-13 81.8 4.9 160 1-161 91-261 (558)
30 PRK00969 hypothetical protein; 97.7 0.00026 5.6E-09 60.1 8.3 97 19-140 205-305 (508)
31 TIGR03268 methan_mark_3 putati 97.6 0.00032 7E-09 59.4 8.8 97 19-140 202-302 (503)
32 PRK00969 hypothetical protein; 97.3 0.0037 8.1E-08 53.2 10.7 118 7-142 49-168 (508)
33 TIGR03268 methan_mark_3 putati 97.1 0.0089 1.9E-07 50.9 11.1 118 7-142 45-165 (503)
34 COG4070 Predicted peptidyl-pro 97.0 0.0023 4.9E-08 53.0 6.5 98 19-141 204-305 (512)
35 PF12903 DUF3830: Protein of u 96.4 0.014 3.1E-07 42.2 6.3 104 17-141 7-130 (147)
36 COG4070 Predicted peptidyl-pro 96.2 0.024 5.2E-07 47.1 7.4 23 19-41 377-399 (512)
37 PF04126 Cyclophil_like: Cyclo 94.2 0.68 1.5E-05 32.3 8.7 101 10-141 2-113 (120)
38 COG2164 Uncharacterized conser 81.3 3.3 7.2E-05 28.2 4.0 29 10-39 5-33 (126)
39 PF06138 Chordopox_E11: Chordo 58.8 38 0.00083 23.9 5.3 47 10-56 5-61 (130)
40 PHA03001 putative virion core 50.6 39 0.00085 23.9 4.3 47 10-56 5-60 (132)
41 PF12396 DUF3659: Protein of u 49.0 28 0.0006 21.5 3.1 30 119-150 16-45 (64)
42 PF05913 DUF871: Bacterial pro 44.5 18 0.00038 30.1 2.2 51 90-141 298-349 (357)
43 PF11314 DUF3117: Protein of u 30.5 30 0.00064 20.2 1.0 22 11-32 19-43 (51)
44 PF08415 NRPS: Nonribosomal pe 30.5 43 0.00092 19.8 1.8 27 130-158 4-30 (58)
45 cd02987 Phd_like_Phd Phosducin 29.6 1.3E+02 0.0029 22.1 4.7 37 18-56 84-123 (175)
46 PF02505 MCR_D: Methyl-coenzym 26.8 1.6E+02 0.0034 21.6 4.4 33 10-44 67-99 (153)
47 cd02988 Phd_like_VIAF Phosduci 23.0 2E+02 0.0043 21.6 4.6 36 18-55 103-141 (192)
48 TIGR03260 met_CoM_red_D methyl 20.1 2.9E+02 0.0064 20.1 4.7 32 10-44 66-97 (150)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-55 Score=347.58 Aligned_cols=161 Identities=47% Similarity=0.806 Sum_probs=154.0
Q ss_pred CCCCCCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcC-----------CcCCceEEEeecCceeecCCC
Q 031256 1 MLASDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRG-----------YYNNSKFHRIIKDFIVQGGDP 64 (163)
Q Consensus 1 m~~~~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~rv~~~~~iq~G~~ 64 (163)
|-.+..++|+|+||+| .|||+||||.|.||+||+||+.||++. .|+|+.||||+++|||||||+
T Consensus 1 M~~~~~~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDf 80 (372)
T KOG0546|consen 1 MGMSVRTNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDF 80 (372)
T ss_pred CCcccCCCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeecccc
Confidence 6677778999999999 599999999999999999999999542 399999999999999999999
Q ss_pred C-CCCCCCCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCC
Q 031256 65 T-GTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQ 143 (163)
Q Consensus 65 ~-~~~~~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~ 143 (163)
. ++|+||.||||.+|.+| ++.++|+++++||||+.|||+||||||||+.+.|||||+|+|||+||+|++||+.|+.+.
T Consensus 81 s~gnGtGGeSIYG~~FdDE-nF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~ 159 (372)
T KOG0546|consen 81 SEGNGTGGESIYGEKFDDE-NFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLE 159 (372)
T ss_pred ccCCCCCcccccccccccc-cceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccc
Confidence 8 89999999999999999 689999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccceEEEEEEEc
Q 031256 144 TDKDDRPIHDVKILRTSVK 162 (163)
Q Consensus 144 ~~~~~~p~~~i~I~~~~vl 162 (163)
++...+|..+|+|.+||+|
T Consensus 160 ~d~~skP~~dV~I~dCGel 178 (372)
T KOG0546|consen 160 TDEESKPLADVVISDCGEL 178 (372)
T ss_pred cccCCCCccceEecccccc
Confidence 9999999999999999987
No 2
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-55 Score=300.87 Aligned_cols=163 Identities=75% Similarity=1.233 Sum_probs=155.5
Q ss_pred CCCCC-CCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcC
Q 031256 1 MLASD-DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVF 79 (163)
Q Consensus 1 m~~~~-~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~ 79 (163)
|++++ ...+.|.++||.|.|++|||-+.||+||+||.+|++.+||+|..||||+++|+||||||+++|.++.|+||.+|
T Consensus 1 ~~~~~~~q~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF 80 (164)
T KOG0881|consen 1 MIAPPEWQPPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKF 80 (164)
T ss_pred CCCCccCCCCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccchh
Confidence 34433 45788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEE
Q 031256 80 EDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT 159 (163)
Q Consensus 80 ~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~ 159 (163)
.+|.+..|+|..+|+|+||+.|||+|+|||||||.+.+|||++|++||||+.||+|+.++..+.+++.++|..+++|.++
T Consensus 81 ~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika 160 (164)
T KOG0881|consen 81 EDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKA 160 (164)
T ss_pred hhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEcC
Q 031256 160 SVKD 163 (163)
Q Consensus 160 ~vl~ 163 (163)
.+.+
T Consensus 161 ~~~~ 164 (164)
T KOG0881|consen 161 YPSD 164 (164)
T ss_pred ecCC
Confidence 7653
No 3
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=4.6e-52 Score=305.73 Aligned_cols=154 Identities=53% Similarity=0.967 Sum_probs=148.0
Q ss_pred EEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 031256 10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKH 89 (163)
Q Consensus 10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~ 89 (163)
.|.|+|+.|+|+||||+++||++|+||++||+.+||+++.|||++|++++|+||+.+++.++.++++..+++|.++.++|
T Consensus 1 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h 80 (159)
T cd01923 1 YVRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFKPNLSH 80 (159)
T ss_pred CEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccCCccCcccccCcCc
Confidence 37899999999999999999999999999999999999999999999999999999888889999999999998788899
Q ss_pred CcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEEcC
Q 031256 90 TGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163 (163)
Q Consensus 90 ~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~vl~ 163 (163)
+.+|+|+|+++++++++|||||+++++|+||++|+|||||++||++|++|++.+++++++|+++|+|.+|+|++
T Consensus 81 ~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~ 154 (159)
T cd01923 81 DGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV 154 (159)
T ss_pred CCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999974
No 4
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=7.3e-52 Score=302.81 Aligned_cols=152 Identities=51% Similarity=0.939 Sum_probs=145.5
Q ss_pred EEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 031256 10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKH 89 (163)
Q Consensus 10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~ 89 (163)
.|.|+|+.|+|+||||++.||++|+||++||+.+||+++.|||++|++++|+||+.+++.++.++++..+++|..+.++|
T Consensus 2 ~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~~ 81 (153)
T cd01928 2 SVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFEDEFRETLKH 81 (153)
T ss_pred EEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccccccccCCCc
Confidence 48999999999999999999999999999999999999999999999999999999888888889999999997778899
Q ss_pred CcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEE
Q 031256 90 TGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161 (163)
Q Consensus 90 ~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~v 161 (163)
.++|+|+|++.++++++|||||+++++|+||++|+|||||++|||+|++|++++++++++|..+|+|.+|.+
T Consensus 82 ~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ 153 (153)
T cd01928 82 DSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVTI 153 (153)
T ss_pred CCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeEC
Confidence 889999999999999999999999999999999999999999999999999999999999999999999864
No 5
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.9e-51 Score=299.17 Aligned_cols=148 Identities=54% Similarity=0.970 Sum_probs=141.9
Q ss_pred EEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCc
Q 031256 12 TLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTG 91 (163)
Q Consensus 12 ~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 91 (163)
.|+|+.|+|+||||.+.||++|+||++||+.+||+++.|||++|++++|+||+.+++.++.++|+..+++|..+.++|.+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~~ 80 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFEDEFSPSLKHDR 80 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCccccccccccCcCC
Confidence 37999999999999999999999999999999999999999999999999999988888889999999999877899998
Q ss_pred ceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEE
Q 031256 92 AGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT 159 (163)
Q Consensus 92 ~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~ 159 (163)
+|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++++++++++|.++|+|.++
T Consensus 81 ~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~ 148 (148)
T cd01927 81 PYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIINI 148 (148)
T ss_pred CeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999989999999999863
No 6
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-52 Score=304.67 Aligned_cols=159 Identities=47% Similarity=0.797 Sum_probs=149.9
Q ss_pred CCCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcC----CcCCceEEEeecCceeecCCCC-CCCCCCCC
Q 031256 4 SDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRG----YYNNSKFHRIIKDFIVQGGDPT-GTGRGGDS 73 (163)
Q Consensus 4 ~~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~----~y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~ 73 (163)
.++.+.+|+|+.. .|||+|+||++.+|+||+||.+||.++ -|.++.||||+|||+|||||.+ +++.++.|
T Consensus 35 ~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~S 114 (217)
T KOG0880|consen 35 GPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKS 114 (217)
T ss_pred CCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeE
Confidence 4567889999997 589999999999999999999999733 3999999999999999999998 67999999
Q ss_pred CCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccc
Q 031256 74 IYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHD 153 (163)
Q Consensus 74 ~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~ 153 (163)
+||.+|++| +..|+|+++|.||||+.|||+||||||||+...+|||++|+|||+|++||++|.+|+.+.+|++++|.++
T Consensus 115 IyG~~F~DE-Nf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~ 193 (217)
T KOG0880|consen 115 IYGEKFPDE-NFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLED 193 (217)
T ss_pred eecCCCCCc-cceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCcccc
Confidence 999999999 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcC
Q 031256 154 VKILRTSVKD 163 (163)
Q Consensus 154 i~I~~~~vl~ 163 (163)
++|.+|+-|+
T Consensus 194 v~I~~~g~l~ 203 (217)
T KOG0880|consen 194 VVIANCGELP 203 (217)
T ss_pred EEEeecCccc
Confidence 9999998653
No 7
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=1.9e-50 Score=299.12 Aligned_cols=152 Identities=48% Similarity=0.856 Sum_probs=141.0
Q ss_pred EEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCC-------CcCCCCCC
Q 031256 12 TLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYG-------HVFEDEIK 84 (163)
Q Consensus 12 ~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~-------~~~~~e~~ 84 (163)
.|+|+.|+|+||||.+.||++|+||++||+.+||+++.||||+|++++||||+.+++.++.++++ ..+++|..
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~ 80 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEIL 80 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccC
Confidence 37899999999999999999999999999999999999999999999999999887777776654 34667766
Q ss_pred CCCCCCcceEEEeeeCCCCCCcccEEEEcCC-CCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEEcC
Q 031256 85 PELKHTGAGILSMANAGPNTNGSQFFITLAP-ASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163 (163)
Q Consensus 85 ~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~-~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~vl~ 163 (163)
+.++|..+|+|+|++.++++++|||||++++ .++||++|+|||||++|||||++|++++++++++|.++|+|.+|+|++
T Consensus 81 ~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~ 160 (166)
T cd01921 81 PLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILD 160 (166)
T ss_pred CccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEEC
Confidence 7889988999999999999999999999975 799999999999999999999999999999999999999999999974
No 8
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=2.3e-50 Score=292.81 Aligned_cols=146 Identities=74% Similarity=1.255 Sum_probs=139.4
Q ss_pred EEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCc
Q 031256 12 TLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTG 91 (163)
Q Consensus 12 ~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 91 (163)
.|+|+.|+|+||||++.||++|+||++||+.+||+++.|||++|++++||||+.+++.++.++++..+++|..+.++|.+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~~ 80 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFEDEIHPELKHTG 80 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccCCCcccccccCcCCCC
Confidence 37899999999999999999999999999999999999999999999999999988888888999999999778899999
Q ss_pred ceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEE
Q 031256 92 AGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILR 158 (163)
Q Consensus 92 ~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~ 158 (163)
+|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++++++ +++|.++|+|.+
T Consensus 81 ~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~ 146 (146)
T cd01922 81 AGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK 146 (146)
T ss_pred CeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence 999999999999999999999999999999999999999999999999999997 889999999964
No 9
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=7.2e-50 Score=297.17 Aligned_cols=160 Identities=46% Similarity=0.849 Sum_probs=151.9
Q ss_pred CCCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCC
Q 031256 4 SDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEI 83 (163)
Q Consensus 4 ~~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~ 83 (163)
+++.+.+|.|+|+.|+|+||||++.||++|+||++||+.+||+++.|||++|++++|||++.+++.++.++|+..+++|.
T Consensus 1 ~~~~~~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~~E~ 80 (171)
T cd01925 1 EPPTTGKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFKDEF 80 (171)
T ss_pred CCCcccEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCCCccCccc
Confidence 46778899999999999999999999999999999999999999999999999999999999888889999999999998
Q ss_pred CCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEE-cCHHHHHHHhcCCCCCCCCcccceEEEEEEEc
Q 031256 84 KPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC-RGMEVIKRLGSVQTDKDDRPIHDVKILRTSVK 162 (163)
Q Consensus 84 ~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~vl 162 (163)
.+.++|.++|+|+|++.++++++|||||+++++++||++|+|||||+ ++++++++|++++++++++|.++|+|.+|+|+
T Consensus 81 ~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~ 160 (171)
T cd01925 81 HSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVL 160 (171)
T ss_pred ccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEE
Confidence 77888998999999999999999999999999999999999999999 47899999999999999999999999999987
Q ss_pred C
Q 031256 163 D 163 (163)
Q Consensus 163 ~ 163 (163)
+
T Consensus 161 ~ 161 (171)
T cd01925 161 E 161 (171)
T ss_pred c
Confidence 4
No 10
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-49 Score=289.94 Aligned_cols=149 Identities=48% Similarity=0.846 Sum_probs=132.9
Q ss_pred EEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCC-CCCCCCCCCCcCCCCCCCCCCC
Q 031256 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGT-GRGGDSIYGHVFEDEIKPELKH 89 (163)
Q Consensus 11 v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~-~~~~~~~~~~~~~~e~~~~l~~ 89 (163)
+.++|++|+|+||||++.||+||+||++||+.+||+|+.||||+|+|++||||+.+. +.+++ +..+++|+.. ..|
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~~-~~~ 77 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENFA-LNG 77 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcccccc-ccc
Confidence 689999999999999999999999999999999999999999999999999999966 77666 3778888543 344
Q ss_pred Cc--ceEEEeeeCC-CCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC----CCcccceEEEEEEEc
Q 031256 90 TG--AGILSMANAG-PNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKD----DRPIHDVKILRTSVK 162 (163)
Q Consensus 90 ~~--~G~v~~~~~~-~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~----~~p~~~i~I~~~~vl 162 (163)
.+ +|+||||+.+ |++++|||||++.+++|||++|+|||+|++|||+|++|++..+... ..|..+++|.++.++
T Consensus 78 ~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (158)
T COG0652 78 DRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIV 157 (158)
T ss_pred ccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeeee
Confidence 44 9999999988 9999999999999999999999999999999999999999877653 456688999988776
Q ss_pred C
Q 031256 163 D 163 (163)
Q Consensus 163 ~ 163 (163)
+
T Consensus 158 ~ 158 (158)
T COG0652 158 E 158 (158)
T ss_pred C
Confidence 3
No 11
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=1e-47 Score=288.72 Aligned_cols=156 Identities=44% Similarity=0.749 Sum_probs=143.6
Q ss_pred CCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcCC--------cCCceEEEeecCceeecCCCC-CCCCCC
Q 031256 6 DGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRGY--------YNNSKFHRIIKDFIVQGGDPT-GTGRGG 71 (163)
Q Consensus 6 ~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~~--------y~g~~f~rv~~~~~iq~G~~~-~~~~~~ 71 (163)
+.++.|+|+++ .|+|+||||.+.||++|+||++||++++ |+++.||||+|++++||||+. +++.++
T Consensus 16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~ 95 (186)
T PLN03149 16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGC 95 (186)
T ss_pred CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCc
Confidence 44678999976 5999999999999999999999997654 999999999999999999975 677788
Q ss_pred CCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEE-cCHHHHHHHhcCCCCCCCCc
Q 031256 72 DSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC-RGMEVIKRLGSVQTDKDDRP 150 (163)
Q Consensus 72 ~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~~~~~~~~p 150 (163)
.++|+..+++|. ..++|.++|+|+|++.++++++|||||+++++|+||++|+|||+|+ +||+||++|++++++++++|
T Consensus 96 ~~~~g~~f~~e~-~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P 174 (186)
T PLN03149 96 VSIYGSKFEDEN-FIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRP 174 (186)
T ss_pred ccccCCccCCcc-cccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCC
Confidence 888998888884 4678888999999999999999999999999999999999999999 79999999999999999999
Q ss_pred ccceEEEEEEEc
Q 031256 151 IHDVKILRTSVK 162 (163)
Q Consensus 151 ~~~i~I~~~~vl 162 (163)
.++|+|.+|+++
T Consensus 175 ~~~i~I~~cG~~ 186 (186)
T PLN03149 175 KLACVISECGEM 186 (186)
T ss_pred cCCeEEEeCEeC
Confidence 999999999975
No 12
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-49 Score=274.19 Aligned_cols=156 Identities=44% Similarity=0.800 Sum_probs=148.9
Q ss_pred CCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcCC--------cCCceEEEeecCceeecCCCC-CCCCC
Q 031256 5 DDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRGY--------YNNSKFHRIIKDFIVQGGDPT-GTGRG 70 (163)
Q Consensus 5 ~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~~--------y~g~~f~rv~~~~~iq~G~~~-~~~~~ 70 (163)
++.+|.|+|+.+ .|||.||||++.+|+|++||++.|++.| |+++.||||+++|+|||||.- ++|++
T Consensus 7 ~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG 86 (177)
T KOG0879|consen 7 SPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG 86 (177)
T ss_pred CCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCce
Confidence 456899999987 6899999999999999999999998776 999999999999999999976 78888
Q ss_pred CCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCc
Q 031256 71 GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRP 150 (163)
Q Consensus 71 ~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p 150 (163)
..++|+.+|++| ++.|+|+.+|+||||++|++++|.|||||..+..+||++|+|||||++|+.++++|+.+++.++++|
T Consensus 87 ~~sIy~~~F~DE-NFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkP 165 (177)
T KOG0879|consen 87 VASIYGSTFPDE-NFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKP 165 (177)
T ss_pred EEEEcCCCCCCc-ceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCC
Confidence 899999999999 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEEE
Q 031256 151 IHDVKILRTSV 161 (163)
Q Consensus 151 ~~~i~I~~~~v 161 (163)
+.+|.|..|+.
T Consensus 166 Kl~v~i~qCGe 176 (177)
T KOG0879|consen 166 KLPVVIVQCGE 176 (177)
T ss_pred CCcEEEeeccc
Confidence 99999999985
No 13
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-49 Score=313.47 Aligned_cols=157 Identities=52% Similarity=0.916 Sum_probs=152.9
Q ss_pred CCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCC
Q 031256 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKP 85 (163)
Q Consensus 6 ~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~ 85 (163)
+-...|.|.|+.|.|.|||+.|.+|++|+||+.||+.|||+|+.|||.+.+|+||||||+++|.||+|+||.+|.+|+.+
T Consensus 275 Kkkgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWgKpFkDEf~~ 354 (518)
T KOG0883|consen 275 KKKGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFCS 354 (518)
T ss_pred cccceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCccccCCccccccCC
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEEc
Q 031256 86 ELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVK 162 (163)
Q Consensus 86 ~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~vl 162 (163)
.|.|+.||+||||++|||+|||||||+..++.+||++||+||||+.|+++|.+|+.+++++.++|+.+|+|.++.|.
T Consensus 355 ~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VF 431 (518)
T KOG0883|consen 355 NLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVF 431 (518)
T ss_pred CCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998763
No 14
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-49 Score=318.45 Aligned_cols=154 Identities=55% Similarity=0.941 Sum_probs=150.9
Q ss_pred CCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCC
Q 031256 8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPEL 87 (163)
Q Consensus 8 ~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l 87 (163)
...+.++|+.|+|.|.||+++||++|+||...|+.|||+|..||||+++|+||+|||.++|+||+||||..|++|+++.|
T Consensus 404 ~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtggesiwg~dfedefh~~l 483 (558)
T KOG0882|consen 404 GKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGGESIWGKDFEDEFHPNL 483 (558)
T ss_pred ccceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCCcccccccchhhcCccc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEE
Q 031256 88 KHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161 (163)
Q Consensus 88 ~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~v 161 (163)
+|+++-+||||++|||+||||||||+.+.||||++|||||||+.||+|+++|+++.++++++|++++.|.++.|
T Consensus 484 rhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv 557 (558)
T KOG0882|consen 484 RHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISV 557 (558)
T ss_pred ccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876
No 15
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=2.8e-47 Score=285.92 Aligned_cols=157 Identities=46% Similarity=0.748 Sum_probs=144.1
Q ss_pred CCCCCEEEEEecc-----eEEEEEEcCCCChHHHHHHHHHHh---------cCCcCCceEEEeecCceeecCCCC-CCCC
Q 031256 5 DDGPPEVTLETSM-----GSFTVELYYKHSPRTCRNFAELSR---------RGYYNNSKFHRIIKDFIVQGGDPT-GTGR 69 (163)
Q Consensus 5 ~~~~~~v~~~ts~-----G~i~ieL~~~~aP~~~~nF~~l~~---------~~~y~g~~f~rv~~~~~iq~G~~~-~~~~ 69 (163)
...+++|+|+++. |+|+||||.+.||++|+||++||+ .++|+++.||||+|++++|+||+. +++.
T Consensus 12 ~~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~ 91 (183)
T PTZ00060 12 MSKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGT 91 (183)
T ss_pred cCCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCC
Confidence 3457899999874 999999999999999999999996 468999999999999999999986 5677
Q ss_pred CCCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCC
Q 031256 70 GGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDR 149 (163)
Q Consensus 70 ~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~ 149 (163)
++.++++..+++| ...++|.++|+|+|++.++++++|||||+++++++||++|+|||||++|||||++|++.++ ++++
T Consensus 92 ~g~~~~g~~~~~e-~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~-~~~~ 169 (183)
T PTZ00060 92 GGESIYGRKFTDE-NFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGY 169 (183)
T ss_pred CCCcccccccCCc-cccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCC-CCCC
Confidence 8888888888888 4678899899999999999999999999999999999999999999999999999999887 5689
Q ss_pred cccceEEEEEEEcC
Q 031256 150 PIHDVKILRTSVKD 163 (163)
Q Consensus 150 p~~~i~I~~~~vl~ 163 (163)
|.++|+|.+|++++
T Consensus 170 P~~~v~I~~cg~~~ 183 (183)
T PTZ00060 170 PKKPVVVTDCGELQ 183 (183)
T ss_pred CcCCeEEEEeEEcC
Confidence 99999999999985
No 16
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=6e-47 Score=285.33 Aligned_cols=156 Identities=33% Similarity=0.584 Sum_probs=136.3
Q ss_pred CCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCC
Q 031256 5 DDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIK 84 (163)
Q Consensus 5 ~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~ 84 (163)
++..++|.|+|+.|+|+||||.++||++|+||++||+.+||+|+.|||++|+|++|||++.....+ ..++..+.+|..
T Consensus 25 ~~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~~--~~~~~~~~~e~~ 102 (190)
T PRK10903 25 AKGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ--KKPNPPIKNEAD 102 (190)
T ss_pred cCCCcEEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCCC--CCCCCcccCccc
Confidence 356778999999999999999999999999999999999999999999999999999998743221 223556777765
Q ss_pred CCCCCCcceEEEeeeC-CCCCCcccEEEEcCCCCCCCC-----CCcEEEEEEcCHHHHHHHhcCCCCC----CCCcccce
Q 031256 85 PELKHTGAGILSMANA-GPNTNGSQFFITLAPASHLDG-----KHTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDV 154 (163)
Q Consensus 85 ~~l~~~~~G~v~~~~~-~~~~~~sqFfI~l~~~~~ld~-----~~~vfG~Vi~G~~vl~~I~~~~~~~----~~~p~~~i 154 (163)
+.++|. +|+|+|++. ++++++|||||++++.++||+ +|+|||+|++|||||++|++.++++ +++|.++|
T Consensus 103 ~~l~~~-~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v 181 (190)
T PRK10903 103 NGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPV 181 (190)
T ss_pred ccCcCC-CcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCe
Confidence 555554 999999985 489999999999999999984 8999999999999999999999876 57999999
Q ss_pred EEEEEEEcC
Q 031256 155 KILRTSVKD 163 (163)
Q Consensus 155 ~I~~~~vl~ 163 (163)
+|.+|+|+.
T Consensus 182 ~I~~~~v~~ 190 (190)
T PRK10903 182 VILSAKVLP 190 (190)
T ss_pred EEEEEEEeC
Confidence 999999873
No 17
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=5.3e-47 Score=293.96 Aligned_cols=156 Identities=28% Similarity=0.424 Sum_probs=141.9
Q ss_pred CCCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcC-----------CcCCceEEEeecC-ceeecCCCCC
Q 031256 4 SDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRG-----------YYNNSKFHRIIKD-FIVQGGDPTG 66 (163)
Q Consensus 4 ~~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~rv~~~-~~iq~G~~~~ 66 (163)
+...+++|+|+|+ .|+|+||||.+.||++|+||++||++. +|+++.||||+++ +++|+||+..
T Consensus 48 ~~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~ 127 (249)
T PTZ00221 48 EEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS 127 (249)
T ss_pred cCCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence 4577899999998 478999999999999999999999743 3999999999986 8999999874
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCC
Q 031256 67 TGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDK 146 (163)
Q Consensus 67 ~~~~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~ 146 (163)
. +.+++|..|++|. ..++|+++|+|+|++.++++++||||||+.++|+||++|+|||+|++||+||++|++++++.
T Consensus 128 ~---g~s~~G~~f~dE~-~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~ 203 (249)
T PTZ00221 128 F---NVSSTGTPIADEG-YRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDD 203 (249)
T ss_pred C---CccCCCCcccCcc-ccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCC
Confidence 3 4466788899994 57899999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcccceEEEEEEEcC
Q 031256 147 DDRPIHDVKILRTSVKD 163 (163)
Q Consensus 147 ~~~p~~~i~I~~~~vl~ 163 (163)
+++|.++|+|.+|+++.
T Consensus 204 ~grP~~~V~I~~Cgvl~ 220 (249)
T PTZ00221 204 VGRPLLPVTVSFCGALT 220 (249)
T ss_pred CCCCCCCeEEEECeEec
Confidence 89999999999999974
No 18
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=7.9e-47 Score=279.26 Aligned_cols=150 Identities=50% Similarity=0.877 Sum_probs=138.4
Q ss_pred CEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhc--C------CcCCceEEEeecCceeecCCCC-CCCCCCCCC
Q 031256 9 PEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRR--G------YYNNSKFHRIIKDFIVQGGDPT-GTGRGGDSI 74 (163)
Q Consensus 9 ~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~--~------~y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~ 74 (163)
|+|+|+.+ .|+|+||||.+.||++|+||++||++ + +|+++.|||++|++++|+||+. +++.++.++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~ 80 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSI 80 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcc
Confidence 46777765 79999999999999999999999973 4 8999999999999999999976 667788888
Q ss_pred CCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccce
Q 031256 75 YGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV 154 (163)
Q Consensus 75 ~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i 154 (163)
++..+++| ...++|.++|+|+|++.++++++|||||+++++++||++|+|||||++|||||++|++.+++ +++|+++|
T Consensus 81 ~g~~~~~e-~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i 158 (164)
T cd01926 81 YGEKFPDE-NFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKV 158 (164)
T ss_pred cCCccCCC-CccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCe
Confidence 99888888 46789988999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred EEEEEE
Q 031256 155 KILRTS 160 (163)
Q Consensus 155 ~I~~~~ 160 (163)
+|.+|+
T Consensus 159 ~I~~cG 164 (164)
T cd01926 159 VIADCG 164 (164)
T ss_pred EEEECC
Confidence 999996
No 19
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=4.1e-46 Score=275.07 Aligned_cols=150 Identities=32% Similarity=0.598 Sum_probs=130.5
Q ss_pred EEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCC
Q 031256 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHT 90 (163)
Q Consensus 11 v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 90 (163)
|.|+|+.|+|+|+||+++||++|+||++||+.+||+++.||||+|+|++|||++... .+ ...++..+++|....++|
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~~-~~-~~~~~~~~~~e~~~~~~~- 78 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG-MK-QKATKEPIKNEANNGLKN- 78 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCCC-CC-cCCCCCCcCCcccccccC-
Confidence 679999999999999999999999999999999999999999999999999987521 11 122355677776666766
Q ss_pred cceEEEeeeCC-CCCCcccEEEEcCCCCCCC-------C-CCcEEEEEEcCHHHHHHHhcCCCCC----CCCcccceEEE
Q 031256 91 GAGILSMANAG-PNTNGSQFFITLAPASHLD-------G-KHTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKIL 157 (163)
Q Consensus 91 ~~G~v~~~~~~-~~~~~sqFfI~l~~~~~ld-------~-~~~vfG~Vi~G~~vl~~I~~~~~~~----~~~p~~~i~I~ 157 (163)
.+|+||||+.+ +++++|||||++.++++|| + +|+|||+|++|||||++|+++++++ +++|..+|+|.
T Consensus 79 ~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~ 158 (164)
T PRK10791 79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIE 158 (164)
T ss_pred CCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEE
Confidence 49999999864 8999999999999988776 3 7999999999999999999999876 36999999999
Q ss_pred EEEEcC
Q 031256 158 RTSVKD 163 (163)
Q Consensus 158 ~~~vl~ 163 (163)
+|.|.+
T Consensus 159 ~~~i~~ 164 (164)
T PRK10791 159 SVTVSE 164 (164)
T ss_pred EEEEeC
Confidence 998864
No 20
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-46 Score=258.97 Aligned_cols=152 Identities=49% Similarity=0.858 Sum_probs=147.6
Q ss_pred EEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 031256 10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKH 89 (163)
Q Consensus 10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~ 89 (163)
.|.++|..|+|.||||.+.+|++|+||+.||...||+++.|||-+|+|++|+|++..+|.++.|+||.+|++|...-|+|
T Consensus 2 svtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lkh 81 (161)
T KOG0884|consen 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLKH 81 (161)
T ss_pred eEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred CcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC-CCcccceEEEEEEE
Q 031256 90 TGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKD-DRPIHDVKILRTSV 161 (163)
Q Consensus 90 ~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~-~~p~~~i~I~~~~v 161 (163)
+.||.||||+.||++++|||||+.+.+|+||-+|++||+||+|+|+|++|++.++++. .+|+.++.|.++.|
T Consensus 82 ~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~iti 154 (161)
T KOG0884|consen 82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154 (161)
T ss_pred ccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEE
Confidence 9999999999999999999999999999999999999999999999999999999876 89999999998876
No 21
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=6e-45 Score=266.87 Aligned_cols=144 Identities=36% Similarity=0.597 Sum_probs=125.4
Q ss_pred EEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCcc
Q 031256 13 LETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGA 92 (163)
Q Consensus 13 ~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 92 (163)
|+|+.|+|+||||+++||++|+||++||+.+||+++.||||+|++++|||++.....+ ..++..+.+|....++ ..+
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~--~~~~~~~~~e~~~~~~-~~~ 78 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQ--KETLKPIKNEAGNGLS-NTR 78 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCc--cccCCcccCccccccc-CCc
Confidence 7899999999999999999999999999999999999999999999999998754332 2234566677544444 559
Q ss_pred eEEEeeeCC-CCCCcccEEEEcCCCCCCCC-----CCcEEEEEEcCHHHHHHHhcCCCCCC----CCcccceEEEEE
Q 031256 93 GILSMANAG-PNTNGSQFFITLAPASHLDG-----KHTIFGRVCRGMEVIKRLGSVQTDKD----DRPIHDVKILRT 159 (163)
Q Consensus 93 G~v~~~~~~-~~~~~sqFfI~l~~~~~ld~-----~~~vfG~Vi~G~~vl~~I~~~~~~~~----~~p~~~i~I~~~ 159 (163)
|+||||+.+ +++++|||||+++++++||+ +|+|||+|++||+||++|++++++++ ++|..+|+|.++
T Consensus 79 G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~~ 155 (155)
T cd01920 79 GTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIESA 155 (155)
T ss_pred eEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEEC
Confidence 999999864 89999999999999999995 79999999999999999999999764 699999999863
No 22
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-45 Score=291.46 Aligned_cols=160 Identities=46% Similarity=0.845 Sum_probs=156.4
Q ss_pred CCCCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCC
Q 031256 3 ASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDE 82 (163)
Q Consensus 3 ~~~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e 82 (163)
.+|+++.+|.+.|+.|+|.||||+.+||++|+||++||-.|||+|+.|||++|+|++|||||.++|+||.||||..|.+|
T Consensus 7 ~EP~ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~fadE 86 (439)
T KOG0885|consen 7 LEPPTTGKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRPFADE 86 (439)
T ss_pred cCCCccceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCccccccccchhh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEE-cCHHHHHHHhcCCCCCCCCcccceEEEEEEE
Q 031256 83 IKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC-RGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161 (163)
Q Consensus 83 ~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~v 161 (163)
.+++|++.+||+|+||+.+.+.||||||+||++.|+|++++++||+|+ +.+..+.+|..+.++.+.+|..+.+|.+|+|
T Consensus 87 ~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV 166 (439)
T KOG0885|consen 87 FHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEV 166 (439)
T ss_pred cCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEe
Confidence 999999999999999999999999999999999999999999999999 5899999999999999999999999999999
Q ss_pred c
Q 031256 162 K 162 (163)
Q Consensus 162 l 162 (163)
+
T Consensus 167 ~ 167 (439)
T KOG0885|consen 167 L 167 (439)
T ss_pred e
Confidence 7
No 23
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=3.6e-44 Score=260.12 Aligned_cols=146 Identities=54% Similarity=0.911 Sum_probs=134.3
Q ss_pred EEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCc
Q 031256 12 TLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTG 91 (163)
Q Consensus 12 ~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 91 (163)
+++|+.|+|+||||++.||++|+||++||+.++|+++.|||++|++++|+|++..++..+ +.++..+++|..+...|.+
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~~~~~~E~~~~~~~~~ 79 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPGYKFPDENFPLKYHHR 79 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCCCccCCccccCcCcCC
Confidence 478999999999999999999999999999999999999999999999999988654432 4557788899877776788
Q ss_pred ceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEE
Q 031256 92 AGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILR 158 (163)
Q Consensus 92 ~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~ 158 (163)
+|+|+|++.++++++|||||+++++++||++|+|||||++||++|++|++.+++++++|.++|+|.+
T Consensus 80 ~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 80 RGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred CcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999963
No 24
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-44 Score=269.26 Aligned_cols=155 Identities=45% Similarity=0.744 Sum_probs=145.3
Q ss_pred CCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHh--cCC-cCCceEEEeecCceeecCCCC-CCCCCCCCCCCC
Q 031256 7 GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSR--RGY-YNNSKFHRIIKDFIVQGGDPT-GTGRGGDSIYGH 77 (163)
Q Consensus 7 ~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~~~~ 77 (163)
.+|+|+++.. .|+|+++|..|..|++++||..||. .|| |+|++||||+|.|++||||.+ ++|+++.||||.
T Consensus 135 ~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygk 214 (298)
T KOG0111|consen 135 ENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGK 214 (298)
T ss_pred hChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcccccc
Confidence 4677888775 5999999999999999999999995 455 999999999999999999998 789999999999
Q ss_pred cCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEE
Q 031256 78 VFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 157 (163)
Q Consensus 78 ~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~ 157 (163)
+|.+| ++.|+|..+|+||||++|+|+|||||||++....|||++|+|||.|++||+||+++++.++ +.++|.+.|+|.
T Consensus 215 kfdde-nf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgs-ksgkp~qkv~i~ 292 (298)
T KOG0111|consen 215 KFDDE-NFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGS-KSGKPQQKVKIV 292 (298)
T ss_pred ccccc-ceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccC-CCCCcceEEEEE
Confidence 99999 6899999999999999999999999999999999999999999999999999999999986 789999999999
Q ss_pred EEEEcC
Q 031256 158 RTSVKD 163 (163)
Q Consensus 158 ~~~vl~ 163 (163)
+|+.++
T Consensus 293 ~cge~~ 298 (298)
T KOG0111|consen 293 ECGEIE 298 (298)
T ss_pred eccccC
Confidence 999764
No 25
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=8.2e-43 Score=255.22 Aligned_cols=148 Identities=51% Similarity=0.888 Sum_probs=131.2
Q ss_pred EEEEec-ceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCC--CCCCCCcCCCCCC-CC
Q 031256 11 VTLETS-MGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGG--DSIYGHVFEDEIK-PE 86 (163)
Q Consensus 11 v~~~ts-~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~--~~~~~~~~~~e~~-~~ 86 (163)
|.|+|+ +|+|+||||+++||++|+||++||+.++|+++.|||++|++++|+|++..++..+ ....+..+++|.. ..
T Consensus 2 ~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~~ 81 (155)
T PF00160_consen 2 VDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPSL 81 (155)
T ss_dssp EEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTTS
T ss_pred EEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccccCcccccccccccc
Confidence 789997 9999999999999999999999999999999999999999999999988554311 1223446888864 34
Q ss_pred CCCCcceEEEeeeCC--CCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEE
Q 031256 87 LKHTGAGILSMANAG--PNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161 (163)
Q Consensus 87 l~~~~~G~v~~~~~~--~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~v 161 (163)
+.| ++|+|+|++.+ +++++|||||++++.++||++|+|||+|++||++|++|++.++++ +|.++|+|.+|+|
T Consensus 82 ~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~cgv 155 (155)
T PF00160_consen 82 LKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISSCGV 155 (155)
T ss_dssp SSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEEEEE
T ss_pred ccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEEeEC
Confidence 566 69999999976 788999999999999999999999999999999999999998876 9999999999997
No 26
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-42 Score=271.93 Aligned_cols=154 Identities=47% Similarity=0.863 Sum_probs=147.5
Q ss_pred EEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCC-------cCCCC
Q 031256 10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGH-------VFEDE 82 (163)
Q Consensus 10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~-------~~~~e 82 (163)
.|+|+|++|+|+|+||.+++|.+|.||++||+-+||+.|.||-|..+|.+|.|||+++|.||.|+|+. .|..|
T Consensus 2 sVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffeaE 81 (479)
T KOG0415|consen 2 SVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEAE 81 (479)
T ss_pred cEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhhh
Confidence 48999999999999999999999999999999999999999999999999999999999999999874 46778
Q ss_pred CCCCCCCCcceEEEeeeCCCCCCcccEEEEcCC-CCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEE
Q 031256 83 IKPELKHTGAGILSMANAGPNTNGSQFFITLAP-ASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161 (163)
Q Consensus 83 ~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~-~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~v 161 (163)
..+.++|...|+|||++.|.|-+||||||||++ ...||++|+|||+|++|||+|.+|+.+-++++++|+++|+|.+..|
T Consensus 82 ~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTii 161 (479)
T KOG0415|consen 82 FLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTII 161 (479)
T ss_pred hcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEE
Confidence 899999999999999999999999999999985 5799999999999999999999999999999999999999999999
Q ss_pred cC
Q 031256 162 KD 163 (163)
Q Consensus 162 l~ 163 (163)
|+
T Consensus 162 Ld 163 (479)
T KOG0415|consen 162 LD 163 (479)
T ss_pred ec
Confidence 86
No 27
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=3.6e-41 Score=251.23 Aligned_cols=129 Identities=36% Similarity=0.671 Sum_probs=109.8
Q ss_pred EecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCC---------------------CC
Q 031256 14 ETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG---------------------GD 72 (163)
Q Consensus 14 ~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~---------------------~~ 72 (163)
.|++|+|+||||++.||++|+||++||+.+||+++.||||+|+|++||||+.+++.+ +.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 589999999999999999999999999999999999999999999999998755322 22
Q ss_pred CCCCCcCC----CCCCCCCCCCcceEEEeeeCC--CCCCcccEEEEcC-------CCCCCCCCCcEEEEEEcCHHHHHHH
Q 031256 73 SIYGHVFE----DEIKPELKHTGAGILSMANAG--PNTNGSQFFITLA-------PASHLDGKHTIFGRVCRGMEVIKRL 139 (163)
Q Consensus 73 ~~~~~~~~----~e~~~~l~~~~~G~v~~~~~~--~~~~~sqFfI~l~-------~~~~ld~~~~vfG~Vi~G~~vl~~I 139 (163)
++++..+. .+..+.+.|+.+|+|||++.+ +++++|||||+++ +.++||++|+|||+|++|||||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I 162 (176)
T cd01924 83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILREL 162 (176)
T ss_pred CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhh
Confidence 34444332 222345667779999999977 6999999999998 7899999999999999999999999
Q ss_pred hcC
Q 031256 140 GSV 142 (163)
Q Consensus 140 ~~~ 142 (163)
+..
T Consensus 163 ~~g 165 (176)
T cd01924 163 KVG 165 (176)
T ss_pred cCC
Confidence 754
No 28
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-36 Score=219.01 Aligned_cols=154 Identities=45% Similarity=0.773 Sum_probs=140.7
Q ss_pred CCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcC--C-cCCceEEE---eecCceeecCCCC-CCCCCCCCC
Q 031256 7 GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRG--Y-YNNSKFHR---IIKDFIVQGGDPT-GTGRGGDSI 74 (163)
Q Consensus 7 ~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~--~-y~g~~f~r---v~~~~~iq~G~~~-~~~~~~~~~ 74 (163)
.+++|+++.+ +|+++++|+.|..|+|++||..||.+. + |++..||| .++++++||||.+ .+++++.|+
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSi 81 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSI 81 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEe
Confidence 4678899875 799999999999999999999999642 2 99999999 3447999999988 778999999
Q ss_pred CCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccce
Q 031256 75 YGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV 154 (163)
Q Consensus 75 ~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i 154 (163)
|+++|++| ++.++|..+|+|+||+.+|++++|||||++....|||++|+|||+|.+||+++++|+.... .++++.++|
T Consensus 82 y~ekF~De-nFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs-~~gk~~~~i 159 (167)
T KOG0865|consen 82 YGEKFDDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGS-RNGKTSKKI 159 (167)
T ss_pred cccccCCc-CcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCC-cCCcccccE
Confidence 99999999 6899999999999999999999999999999889999999999999999999999999775 789999999
Q ss_pred EEEEEEEc
Q 031256 155 KILRTSVK 162 (163)
Q Consensus 155 ~I~~~~vl 162 (163)
.|.+|+.|
T Consensus 160 ~i~dcg~l 167 (167)
T KOG0865|consen 160 TIADCGQL 167 (167)
T ss_pred EEecCCcC
Confidence 99999865
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.5e-08 Score=81.84 Aligned_cols=160 Identities=20% Similarity=0.236 Sum_probs=127.6
Q ss_pred CCCCCCCCCEEEEEecce----EEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCC-CCC---C
Q 031256 1 MLASDDGPPEVTLETSMG----SFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTG-RGG---D 72 (163)
Q Consensus 1 m~~~~~~~~~v~~~ts~G----~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~-~~~---~ 72 (163)
|+.-......+.+.|+.| .|.|+++.+-.|.-++-|..+|+.+++++..|.+|...++.|.||..-.. .+| .
T Consensus 91 miKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEy 170 (558)
T KOG0882|consen 91 MIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEY 170 (558)
T ss_pred hcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEe
Confidence 334445566788999999 89999999999999999999999999999999999999999999865221 111 1
Q ss_pred CCCCC---cCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCC
Q 031256 73 SIYGH---VFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDR 149 (163)
Q Consensus 73 ~~~~~---~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~ 149 (163)
+.... ..+.+.+..++|. .-++...+......+-+|++.-...+.+..+..|+|++..|-++++.|.+..++....
T Consensus 171 Ws~e~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q 249 (558)
T KOG0882|consen 171 WSAEGPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQ 249 (558)
T ss_pred ecCCCcccCcccccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhc
Confidence 11111 1123345677887 6666777665566677899988888999999999999999999999999999999999
Q ss_pred cccceEEEEEEE
Q 031256 150 PIHDVKILRTSV 161 (163)
Q Consensus 150 p~~~i~I~~~~v 161 (163)
|..++.|.+++.
T Consensus 250 ~ks~y~l~~Vel 261 (558)
T KOG0882|consen 250 PKSPYGLMHVEL 261 (558)
T ss_pred cccccccceeeh
Confidence 999999988865
No 30
>PRK00969 hypothetical protein; Provisional
Probab=97.65 E-value=0.00026 Score=60.10 Aligned_cols=97 Identities=25% Similarity=0.365 Sum_probs=65.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHhcCCc----CCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCcceE
Q 031256 19 SFTVELYYKHSPRTCRNFAELSRRGYY----NNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGI 94 (163)
Q Consensus 19 ~i~ieL~~~~aP~~~~nF~~l~~~~~y----~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~G~ 94 (163)
.+.+||.++ +|.++++|+.+.+.|.+ .-++|-+ +. +..+...+.|+ ....++|+
T Consensus 205 y~eve~~~~-~p~s~EH~la~~~~G~f~Vd~~tstfI~---d~---------------~L~g~~~p~En---~~~R~~Gt 262 (508)
T PRK00969 205 YVEVELDPG-APKSVEHFLALLEDGTFEVDFETSTFIA---DD---------------RLQGLKIPEEN---FEPRRRGT 262 (508)
T ss_pred EEEEEEcCC-CCchHHHHHHHHhCCeEEEeeeecceEe---ec---------------cccCccCCccc---cCccccce
Confidence 477888665 99999999999998762 2222211 11 12234445552 23345999
Q ss_pred EEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHh
Q 031256 95 LSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLG 140 (163)
Q Consensus 95 v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~ 140 (163)
|.+.+.|.+ .-.-||...+-+ -.-.|+|+|+|++|||+++--+
T Consensus 263 VTVRt~G~g--~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~ 305 (508)
T PRK00969 263 VTVRTAGVG--VGKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAK 305 (508)
T ss_pred EEEEeeccC--ceeEEEECCCCC-CCccceeEEEEecceeeeeccc
Confidence 999998754 335888776543 2357999999999999987443
No 31
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=97.65 E-value=0.00032 Score=59.42 Aligned_cols=97 Identities=26% Similarity=0.397 Sum_probs=64.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHhcCCc----CCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCcceE
Q 031256 19 SFTVELYYKHSPRTCRNFAELSRRGYY----NNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGI 94 (163)
Q Consensus 19 ~i~ieL~~~~aP~~~~nF~~l~~~~~y----~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~G~ 94 (163)
.+.+||.++ +|.++++|+.+.+.|.+ .-.+|-+ + .+..+...+.|+ +....+|+
T Consensus 202 y~evE~~~~-~p~s~EH~la~~~~G~~~Vd~~tsTfi~---d---------------~~L~g~~~p~En---~~~R~rGt 259 (503)
T TIGR03268 202 YVEVELDPN-APVSVEHFLALMEDGTFRVDYRTSTFIS---D---------------DSLRGLDKPEEN---IEKRRRGA 259 (503)
T ss_pred EEEEEEcCC-CChhHHHHHHHHhCCeEEEeeeecceEe---c---------------ccccCccCCccc---cCccccee
Confidence 477888654 99999999999988762 2222211 1 112234455552 23345999
Q ss_pred EEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHh
Q 031256 95 LSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLG 140 (163)
Q Consensus 95 v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~ 140 (163)
|.+.+.|.+ .-..||...+-+ -.-.|+|+|+|++|||+++--+
T Consensus 260 VTVRn~G~G--~G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~ 302 (503)
T TIGR03268 260 VTVRNSGVG--EGRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQ 302 (503)
T ss_pred EEEEeeccC--ceeEEEEcCCCC-CCcccceeEEEecceeeeeccc
Confidence 999998754 235888776543 2357999999999999987443
No 32
>PRK00969 hypothetical protein; Provisional
Probab=97.29 E-value=0.0037 Score=53.25 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=75.8
Q ss_pred CCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCC
Q 031256 7 GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPE 86 (163)
Q Consensus 7 ~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~ 86 (163)
.+....+.|++|.++|||. .....+.-+++.++. |.|...+=--++- +.+|.... .+..+ ...
T Consensus 49 ~~~~y~IkTtkG~i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~s~~~-vAfGp~~s-----------~l~p~-~~~ 111 (508)
T PRK00969 49 ETKKYRIKTTKGEIVIELT--EENESVDFWLENYKE--FEGKSLRWTSRSA-VAFGPFES-----------DLEPS-REE 111 (508)
T ss_pred ccceEEEEccCceEEEEEc--cCcchhhHHHHhHHh--hcCCceEeccccc-eeEccccc-----------Ccccc-cCc
Confidence 4678899999999999998 456677777777765 5666664443333 33332221 11111 111
Q ss_pred CCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCC--CCcEEEEEEcCHHHHHHHhcC
Q 031256 87 LKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG--KHTIFGRVCRGMEVIKRLGSV 142 (163)
Q Consensus 87 l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~--~~~vfG~Vi~G~~vl~~I~~~ 142 (163)
....++-|.+.-+|-+...+.+.|+..+....-+ +--+||+|+.|..+|+++...
T Consensus 112 -~~y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~~ 168 (508)
T PRK00969 112 -YEYERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTDG 168 (508)
T ss_pred -ceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccCC
Confidence 1234788888888877777777777654321111 127999999999999999764
No 33
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=97.10 E-value=0.0089 Score=50.88 Aligned_cols=118 Identities=16% Similarity=0.193 Sum_probs=76.0
Q ss_pred CCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCC
Q 031256 7 GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPE 86 (163)
Q Consensus 7 ~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~ 86 (163)
.+....+.|++|.++|+|-. ...+++-|++.++. |.|...+=.-++- +.+|.... .+... ..
T Consensus 45 ~~~~y~IkTtkG~i~iel~~--~~~~~~~w~e~y~~--~e~~~i~W~s~~~-vAfGp~~s-----------dl~p~--~~ 106 (503)
T TIGR03268 45 ETKEYLIKTTKGEVVIELTP--NTEAGKFWSEIYKE--LEGKQIRWTTPQE-VAFGPFPS-----------DLEPS--RE 106 (503)
T ss_pred ccceEEEEccCceEEEEecC--CchHHHHHHHHHHh--hcCCceeecchhh-eeeCcccC-----------Ccccc--CC
Confidence 46778999999999999973 56677777777765 5555554333332 23332221 11111 11
Q ss_pred CCCCcceEEEeeeCCCCCCcccEEEEcCCCC---CCCCCCcEEEEEEcCHHHHHHHhcC
Q 031256 87 LKHTGAGILSMANAGPNTNGSQFFITLAPAS---HLDGKHTIFGRVCRGMEVIKRLGSV 142 (163)
Q Consensus 87 l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~---~ld~~~~vfG~Vi~G~~vl~~I~~~ 142 (163)
-....++-|.+.-+|-+...+.+.|+..+.. .+..+.-+||+|+.|..+|+++...
T Consensus 107 ~~~y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~~ 165 (503)
T TIGR03268 107 PSEYERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSDG 165 (503)
T ss_pred cceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccCC
Confidence 1223478888888888877777777766433 1222567999999999999999663
No 34
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0023 Score=53.01 Aligned_cols=98 Identities=23% Similarity=0.393 Sum_probs=62.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHhcCC----cCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCcceE
Q 031256 19 SFTVELYYKHSPRTCRNFAELSRRGY----YNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGI 94 (163)
Q Consensus 19 ~i~ieL~~~~aP~~~~nF~~l~~~~~----y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~G~ 94 (163)
.+.+||.++ +|+++++|++|.+.|- |.-.+|--. .+....+.+.| + +-...+|.
T Consensus 204 y~eve~s~n-sP~saEH~lalmedG~lri~~~tntfis~------------------~~lq~~~~~~e-n--~d~RerG~ 261 (512)
T COG4070 204 YFEVELSRN-SPKSAEHFLALMEDGTLRIDVTTNTFISD------------------DTLQEEKVPEE-N--FDLRERGA 261 (512)
T ss_pred EEEEEeCCC-CchhHHHHHHHhhcceEEEEEeccceeec------------------cccccccCChh-h--hhhhhcce
Confidence 478888665 9999999999998764 333333111 11112334444 2 22345899
Q ss_pred EEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhc
Q 031256 95 LSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGS 141 (163)
Q Consensus 95 v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~ 141 (163)
+++.+.|.+ .-.-||...+-+. --.|.++|+|++||++++--..
T Consensus 262 iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 262 ITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred EEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence 999987654 3357887654332 2468899999999999875533
No 35
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=96.37 E-value=0.014 Score=42.17 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=52.4
Q ss_pred ceEEEEEEcCCCChHHHHHHHHHHh------cCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCC
Q 031256 17 MGSFTVELYYKHSPRTCRNFAELSR------RGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHT 90 (163)
Q Consensus 17 ~G~i~ieL~~~~aP~~~~nF~~l~~------~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 90 (163)
.-.++.+|..|.||+||+.|.+..= ...|.|..++--.+.+-. ...+.|+. -.+.
T Consensus 7 g~~~~A~l~~d~AP~Tcaa~~~~LP~~~~~~HarwSG~ei~~~l~~~~~-----------------~~~~~EN~--T~~P 67 (147)
T PF12903_consen 7 GVSFTARLLDDKAPKTCAAFWEALPLKGKVIHARWSGEEIWIPLPDFDP-----------------FEPGRENH--TVTP 67 (147)
T ss_dssp TEEEEEEE-TTTSHHHHHHHHHH--EEEE-EE-SSSSSEEEEEEE--SS-----------------S---S-SE--ESS-
T ss_pred CeEEEEEEcccCChHHHHHHHHhCCCCCcEEEEEEECcEEEEECCCcCc-----------------CCCCCCcC--cccC
Confidence 3478999999999999999999871 112555544444443210 11233422 2344
Q ss_pred cceEEEee--e-CC----CC-CCcccEEEEcC------CCCCCCCCCcEEEEEEcCHHHHHHHhc
Q 031256 91 GAGILSMA--N-AG----PN-TNGSQFFITLA------PASHLDGKHTIFGRVCRGMEVIKRLGS 141 (163)
Q Consensus 91 ~~G~v~~~--~-~~----~~-~~~sqFfI~l~------~~~~ld~~~~vfG~Vi~G~~vl~~I~~ 141 (163)
.+|-|.+. . .. +. -....+|+-.+ +..++-+ .+|++|++|.+-+.++.+
T Consensus 68 ~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~G--N~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 68 IPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPG--NHFATITEGLEELAEACR 130 (147)
T ss_dssp -TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--E--EEEEEEEESHHHHHHHHH
T ss_pred CCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccce--eEEEEEcCCHHHHHHHHH
Confidence 46777766 1 11 11 12233443222 3333434 469999999998877743
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.024 Score=47.11 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHh
Q 031256 19 SFTVELYYKHSPRTCRNFAELSR 41 (163)
Q Consensus 19 ~i~ieL~~~~aP~~~~nF~~l~~ 41 (163)
-|.||||.+.||+++..|+.+..
T Consensus 377 iieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc
Confidence 48999999999999999999873
No 37
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=94.20 E-value=0.68 Score=32.31 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=56.8
Q ss_pred EEEEEecceEEEEEEcCCCChHHHHHHHHHH----hcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCC
Q 031256 10 EVTLETSMGSFTVELYYKHSPRTCRNFAELS----RRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKP 85 (163)
Q Consensus 10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~----~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~ 85 (163)
++.|+.....+.++|+.. .+++.|++.. +-.-|-+ .++--.| ..++.+...
T Consensus 2 kI~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~g~-E~y~~~p---------------------~~l~~~~~~ 56 (120)
T PF04126_consen 2 KIKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDWGN-EKYFSLP---------------------LKLPTEENP 56 (120)
T ss_dssp EEEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEECTT-EEEEE-S--------------------------SSSE
T ss_pred eEEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHCCc-eEEEeCC---------------------CCCCcccCc
Confidence 466777778899999876 7888898886 1112322 2221111 111211112
Q ss_pred CCCCCcceEEEeeeCCCCCCcccEEEEcCCCC-------CCCCCCcEEEEEEcCHHHHHHHhc
Q 031256 86 ELKHTGAGILSMANAGPNTNGSQFFITLAPAS-------HLDGKHTIFGRVCRGMEVIKRLGS 141 (163)
Q Consensus 86 ~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~-------~ld~~~~vfG~Vi~G~~vl~~I~~ 141 (163)
+ .-.+.|-|+.-..+.+ |.|-.++.| .+-....++|||.+|.+.++++..
T Consensus 57 ~-~~~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 57 R-SSVEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp E-SSB-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred c-ccccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 2 2235788888766555 777777664 455678899999999998888744
No 38
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=81.28 E-value=3.3 Score=28.24 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=22.2
Q ss_pred EEEEEecceEEEEEEcCCCChHHHHHHHHH
Q 031256 10 EVTLETSMGSFTVELYYKHSPRTCRNFAEL 39 (163)
Q Consensus 10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l 39 (163)
++.+.-..|.-++||+.++ |.+++....-
T Consensus 5 Riri~fEsg~c~~eL~ee~-pE~vr~i~d~ 33 (126)
T COG2164 5 RIRITFESGHCTGELDEEN-PESVRRIYDS 33 (126)
T ss_pred EEEEEEecceEEEEccccC-hHHHHHHHHh
Confidence 4556666699999998886 9999876543
No 39
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=58.85 E-value=38 Score=23.92 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=34.0
Q ss_pred EEEEEecceEEEEEEcCCCCh---------HHHHHHHHHHhcC-CcCCceEEEeecC
Q 031256 10 EVTLETSMGSFTVELYYKHSP---------RTCRNFAELSRRG-YYNNSKFHRIIKD 56 (163)
Q Consensus 10 ~v~~~ts~G~i~ieL~~~~aP---------~~~~nF~~l~~~~-~y~g~~f~rv~~~ 56 (163)
-++++|..|++.+..-.+.++ ++++.|++..+.= .-+.+.|+-++++
T Consensus 5 NIfLEsd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~kyI~veeStFylvvrd 61 (130)
T PF06138_consen 5 NIFLESDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLKKYIDVEESTFYLVVRD 61 (130)
T ss_pred EEEEeccCceeEEEEeCCCcccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 478999999988877654433 3678999887541 1467888888886
No 40
>PHA03001 putative virion core protein; Provisional
Probab=50.58 E-value=39 Score=23.92 Aligned_cols=47 Identities=26% Similarity=0.392 Sum_probs=33.3
Q ss_pred EEEEEecceEEEEEEcC--CCCh------HHHHHHHHHHhcC-CcCCceEEEeecC
Q 031256 10 EVTLETSMGSFTVELYY--KHSP------RTCRNFAELSRRG-YYNNSKFHRIIKD 56 (163)
Q Consensus 10 ~v~~~ts~G~i~ieL~~--~~aP------~~~~nF~~l~~~~-~y~g~~f~rv~~~ 56 (163)
-++++|..|++.+..-. ..+| +++++|++..+.= .-+.+.|+-++++
T Consensus 5 NIfLEsd~grvkl~~~~~~~~~~~~~~~~ka~~~fl~~L~kYi~v~eStFylvvrd 60 (132)
T PHA03001 5 NIFLETDAGRVKLAIENPDKVCATKAEMRKAINKFLELLKKYIHVDKSTFYLVVKD 60 (132)
T ss_pred EEEEeccCCceEEEEcCCCccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 47899999987766643 3445 4678998887541 1467889888887
No 41
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=49.00 E-value=28 Score=21.54 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=21.3
Q ss_pred CCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCc
Q 031256 119 LDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRP 150 (163)
Q Consensus 119 ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p 150 (163)
+|..-.++|||++| -+.+|.-..+++++.-
T Consensus 16 ~d~~G~~vG~vveG--d~k~L~G~~vd~~G~I 45 (64)
T PF12396_consen 16 VDDDGNVVGRVVEG--DPKKLVGKKVDEDGDI 45 (64)
T ss_pred ECCCCCEEEEEecC--CHHHhcCCcCCCCCCE
Confidence 45566789999999 5666766667766543
No 42
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=44.53 E-value=18 Score=30.13 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=34.5
Q ss_pred CcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEc-CHHHHHHHhc
Q 031256 90 TGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCR-GMEVIKRLGS 141 (163)
Q Consensus 90 ~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~-G~~vl~~I~~ 141 (163)
..+|.|.+.+.......-+.-|++.+.|. |++.-|+|+|.+ -+..|+-|..
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred ccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 34899999998766667789999999886 888999999996 6888888754
No 43
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=30.48 E-value=30 Score=20.18 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=14.6
Q ss_pred EEEEec---ceEEEEEEcCCCChHH
Q 031256 11 VTLETS---MGSFTVELYYKHSPRT 32 (163)
Q Consensus 11 v~~~ts---~G~i~ieL~~~~aP~~ 32 (163)
+++-.+ -||+++||.+++|-.-
T Consensus 19 ivmRvPleGGGRLVvEl~~~Ea~~L 43 (51)
T PF11314_consen 19 IVMRVPLEGGGRLVVELNPDEAKEL 43 (51)
T ss_pred EEEEEecCCCcEEEEEeCHHHHHHH
Confidence 344444 4899999987765443
No 44
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=30.46 E-value=43 Score=19.85 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=18.9
Q ss_pred EcCHHHHHHHhcCCCCCCCCcccceEEEE
Q 031256 130 CRGMEVIKRLGSVQTDKDDRPIHDVKILR 158 (163)
Q Consensus 130 i~G~~vl~~I~~~~~~~~~~p~~~i~I~~ 158 (163)
+.|.+|++++.+. .......-||..++
T Consensus 4 ~sGv~vlRel~r~--~~~~~~~~PVVFTS 30 (58)
T PF08415_consen 4 FSGVEVLRELARR--GGGRAAVMPVVFTS 30 (58)
T ss_pred ccHHHHHHHHHHh--cCCCCCcCCEEEeC
Confidence 4689999999887 24455566666654
No 45
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=29.60 E-value=1.3e+02 Score=22.07 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=27.5
Q ss_pred eEEEEEEcCCCChHHH---HHHHHHHhcCCcCCceEEEeecC
Q 031256 18 GSFTVELYYKHSPRTC---RNFAELSRRGYYNNSKFHRIIKD 56 (163)
Q Consensus 18 G~i~ieL~~~~aP~~~---~nF~~l~~~~~y~g~~f~rv~~~ 56 (163)
+.++|.+|.+|||... ..|.+|++. |....|.+|--+
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~--~~~vkF~kVd~d 123 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAE--YPAVKFCKIRAS 123 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHH--CCCeEEEEEecc
Confidence 3799999999998543 356677765 678899998543
No 46
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=26.81 E-value=1.6e+02 Score=21.56 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=26.7
Q ss_pred EEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCC
Q 031256 10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGY 44 (163)
Q Consensus 10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~ 44 (163)
.|-+....|+|.+||-.+ -...+...+.|+.-+
T Consensus 67 ~veL~V~vGri~lele~~--~~~ie~I~~iCee~l 99 (153)
T PF02505_consen 67 EVELTVKVGRIILELEDE--EDVIEKIREICEEVL 99 (153)
T ss_pred EEEEEEEEeEEEEEecCc--HHHHHHHHHHHHHhC
Confidence 466777789999999875 567788999998765
No 47
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=23.03 E-value=2e+02 Score=21.55 Aligned_cols=36 Identities=31% Similarity=0.538 Sum_probs=27.4
Q ss_pred eEEEEEEcCCCChHHH---HHHHHHHhcCCcCCceEEEeec
Q 031256 18 GSFTVELYYKHSPRTC---RNFAELSRRGYYNNSKFHRIIK 55 (163)
Q Consensus 18 G~i~ieL~~~~aP~~~---~nF~~l~~~~~y~g~~f~rv~~ 55 (163)
..|+|.+|..++|... ..|.+|++. |....|.+|.-
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA~k--~~~vkFvkI~a 141 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELARK--FPDTKFVKIIS 141 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHH--CCCCEEEEEEh
Confidence 3699999999988643 366777765 67889999854
No 48
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=20.12 E-value=2.9e+02 Score=20.08 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=25.5
Q ss_pred EEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCC
Q 031256 10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGY 44 (163)
Q Consensus 10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~ 44 (163)
.|.+....|+|.+||.. ....+...+.|+.-|
T Consensus 66 ~veL~V~VGrI~le~~~---~~~i~~I~eiC~e~~ 97 (150)
T TIGR03260 66 DVELRVQVGRIILELED---EDIVEEIEEICKEML 97 (150)
T ss_pred EEEEEEEEeEEEEEecC---HHHHHHHHHHHHhhC
Confidence 45667778999999974 367889999998765
Done!