BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031257
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P5Q|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|C Chain C, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|D Chain D, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5R|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
pdb|2P5R|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
Length = 170
Score = 281 bits (719), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 131/160 (81%), Positives = 148/160 (92%)
Query: 1 MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
M +Q +NPES+ D +VKDA+ ++VDLS +KGKVLLIVNVASKCGMTNSNY E++QLY+K
Sbjct: 1 MATQTSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEK 60
Query: 61 YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
YKDQGLEILAFPCNQFGEEEPG+NDQI DFVCTRFKSEFPIF+KIDVNGE+ASPLY+ LK
Sbjct: 61 YKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLK 120
Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLE 160
GKWGIFGDDIQWNFAKFLV+K+GQVVDRYYPTTS LSLE
Sbjct: 121 LGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLE 160
>pdb|2VUP|A Chain A, Crystal Structure Of A Type Ii Tryparedoxin-Dependant
Peroxidase From Trypanosoma Brucei
Length = 190
Score = 165 bits (417), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/151 (52%), Positives = 103/151 (68%), Gaps = 1/151 (0%)
Query: 11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
SIFD V DA +L +KG LLI NVASKCG T Y + LY+KYK QG +LA
Sbjct: 27 SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLA 86
Query: 71 FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
FPCNQFG +EPG+ ++I +FVCT+FK+EFPI KI+VNGE+A PLY+ +K K GI
Sbjct: 87 FPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTK 146
Query: 131 -IQWNFAKFLVDKNGQVVDRYYPTTSLLSLE 160
I+WNF FL+D++G V+R+ P S+ +E
Sbjct: 147 AIKWNFTSFLIDRDGVPVERFSPGASVKDIE 177
>pdb|3DWV|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|3DWV|B Chain B, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
Length = 187
Score = 162 bits (410), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Query: 11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
SIFD V DA +L +KG LLI NVASKCG T Y + LY+KYK QG +LA
Sbjct: 25 SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLA 84
Query: 71 FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
FP NQFG +EPG+ ++I +FVCT+FK+EFPI KI+VNGE+A PLY+ +K K GI
Sbjct: 85 FPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATK 144
Query: 131 -IQWNFAKFLVDKNGQVVDRYYPTTSLLSLE 160
I+WNF FL+D++G V+R+ P S+ +E
Sbjct: 145 AIKWNFTSFLIDRDGVPVERFSPGASVKDIE 175
>pdb|3E0U|A Chain A, Crystal Structure Of T. Cruzi Gpx1
Length = 166
Score = 162 bits (409), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 102/152 (67%), Gaps = 1/152 (0%)
Query: 10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEIL 69
+SI++ V A G DLS +KG LLI NVAS+CG T Y + LY+KYK QG +L
Sbjct: 3 KSIYEFQVNAADGKPYDLSQHKGHPLLIYNVASRCGYTKGGYETATTLYNKYKGQGFTVL 62
Query: 70 AFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGD 129
AFPCNQF +EPG+ ++ +F CTRFK++FPI KIDVNG A PLY+ +K+ G+FG
Sbjct: 63 AFPCNQFAGQEPGTALEVKEFACTRFKADFPIMAKIDVNGSKAHPLYEFMKATIPGLFGT 122
Query: 130 D-IQWNFAKFLVDKNGQVVDRYYPTTSLLSLE 160
I+WNF FL+D++G V+R+ P S+ +E
Sbjct: 123 KAIKWNFTSFLIDRHGVPVERFSPGASVEDIE 154
>pdb|2RM5|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|2RM6|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Reduced Form
Length = 167
Score = 161 bits (408), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Query: 11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
SIFD V DA +L +KG LLI NVASKCG T Y + LY+KYK QG +LA
Sbjct: 5 SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLA 64
Query: 71 FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
FP NQFG +EPG+ ++I +FVCT+FK+EFPI KI+VNGE+A PLY+ +K K GI
Sbjct: 65 FPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATK 124
Query: 131 -IQWNFAKFLVDKNGQVVDRYYPTTSLLSLE 160
I+WNF FL+D++G V+R+ P S+ +E
Sbjct: 125 AIKWNFTSFLIDRDGVPVERFSPGASVKDIE 155
>pdb|2OBI|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Phospholipid Hydroperoxide Glutathione
Peroxidase (Gpx4)
Length = 183
Score = 152 bits (384), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 103/154 (66%), Gaps = 5/154 (3%)
Query: 10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEIL 69
S+ + S KD GH V+L Y+G V ++ NVAS+CG T NY +L L+ +Y + GL IL
Sbjct: 25 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRIL 84
Query: 70 AFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK---SGKWGI 126
AFPCNQFG++EPGSN++I +F + +F +F KI VNG+ A PL+K +K GK GI
Sbjct: 85 AFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGK-GI 142
Query: 127 FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLE 160
G+ I+WNF KFL+DKNG VV RY P L +E
Sbjct: 143 LGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIE 176
>pdb|2WGR|A Chain A, Combining Crystallography And Molecular Dynamics: The Case
Of Schistosoma Mansoni Phospholipid Glutathione
Peroxidase
Length = 169
Score = 152 bits (384), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 100/150 (66%)
Query: 11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
SI++ +VKD G +V L Y+G V LIVNVA K G T+ NY +L +++ + +GL ILA
Sbjct: 10 SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKSGATDKNYRQLQEMHTRLVGKGLRILA 69
Query: 71 FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
FPCNQFG +EP + +I FV ++ +F +F KI VNG A LYK LKS + G ++
Sbjct: 70 FPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNN 129
Query: 131 IQWNFAKFLVDKNGQVVDRYYPTTSLLSLE 160
I+WNF+KFLVD+ GQ V RY PTT+ +E
Sbjct: 130 IKWNFSKFLVDRQGQPVKRYSPTTAPYDIE 159
>pdb|2V1M|A Chain A, Crystal Structure Of Schistosoma Mansoni Glutathione
Peroxidase
Length = 169
Score = 151 bits (382), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 100/150 (66%)
Query: 11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
SI++ +VKD G +V L Y+G V LIVNVA K G T+ NY +L +++ + +GL ILA
Sbjct: 10 SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKXGATDKNYRQLQEMHTRLVGKGLRILA 69
Query: 71 FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
FPCNQFG +EP + +I FV ++ +F +F KI VNG A LYK LKS + G ++
Sbjct: 70 FPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNN 129
Query: 131 IQWNFAKFLVDKNGQVVDRYYPTTSLLSLE 160
I+WNF+KFLVD+ GQ V RY PTT+ +E
Sbjct: 130 IKWNFSKFLVDRQGQPVKRYSPTTAPYDIE 159
>pdb|3CMI|A Chain A, Crystal Structure Of Glutathione-Dependent Phospholipid
Peroxidase Hyr1 From The Yeast Saccharomyces Cerevisiae
Length = 171
Score = 150 bits (378), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 96/148 (64%), Gaps = 2/148 (1%)
Query: 13 FDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72
+ L+ D +G KGKV+LIVNVASKCG T Y EL LY +YKD+G I+ FP
Sbjct: 13 YKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFT-PQYKELEALYKRYKDEGFTIIGFP 71
Query: 73 CNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFG-DDI 131
CNQFG +EPGS+++IA F + FPI +KIDVNG + P+YK LKS K G+ G I
Sbjct: 72 CNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGI 131
Query: 132 QWNFAKFLVDKNGQVVDRYYPTTSLLSL 159
+WNF KFLVDK G+V +RY T SL
Sbjct: 132 KWNFEKFLVDKKGKVYERYSSLTKPSSL 159
>pdb|2GS3|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 4(Gpx4)
Length = 185
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 105/160 (65%), Gaps = 5/160 (3%)
Query: 4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD 63
Q ++ S+ + S KD GH V+L Y+G V ++ NVAS+ G T NY +L L+ +Y +
Sbjct: 21 QSMRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAE 80
Query: 64 QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK--- 120
GL ILAFPCNQFG++EPGSN++I +F + +F +F KI VNG+ A PL+K +K
Sbjct: 81 CGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQP 139
Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLE 160
GK GI G+ I+WNF KFL+DKNG VV RY P L +E
Sbjct: 140 KGK-GILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIE 178
>pdb|2P31|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 7
pdb|2P31|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 7
Length = 181
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD 63
Q +Q + +D + RG V L Y+G V L+VNVAS+CG T+ +Y L QL
Sbjct: 21 QSMQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGP 80
Query: 64 QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGK 123
+LAFPCNQFG++EP SN +I F + FP+F KI V G A P +K L
Sbjct: 81 HHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTS 140
Query: 124 WGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSL 156
G + WNF K+LV +G+VV + PT S+
Sbjct: 141 ----GKEPTWNFWKYLVAPDGKVVGAWDPTVSV 169
>pdb|3KIJ|A Chain A, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|B Chain B, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|C Chain C, Crystal Structure Of The Human Pdi-Peroxidase
Length = 180
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 82/146 (56%), Gaps = 4/146 (2%)
Query: 11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
S + VKDA+G V L YKGKV L+VNVAS C +T+ NY+ L +L+ ++ +LA
Sbjct: 17 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 76
Query: 71 FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
FPCNQFGE EP + ++ F + FPIF KI + G P ++ L +
Sbjct: 77 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKE 132
Query: 131 IQWNFAKFLVDKNGQVVDRYYPTTSL 156
+WNF K+LV+ GQVV + P +
Sbjct: 133 PRWNFWKYLVNPEGQVVKFWRPEEPI 158
>pdb|3CYN|A Chain A, The Structure Of Human Gpx8
pdb|3CYN|B Chain B, The Structure Of Human Gpx8
pdb|3CYN|C Chain C, The Structure Of Human Gpx8
Length = 189
Score = 120 bits (300), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 81/142 (57%), Gaps = 4/142 (2%)
Query: 11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
S + VKDA+G V L YKGKV L+VNVAS C +T+ NY+ L +L+ ++ +LA
Sbjct: 26 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 85
Query: 71 FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
FPCNQFGE EP + ++ F + FPIF KI + G P ++ L +
Sbjct: 86 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKE 141
Query: 131 IQWNFAKFLVDKNGQVVDRYYP 152
+WNF K+LV+ GQVV + P
Sbjct: 142 PRWNFWKYLVNPEGQVVKFWRP 163
>pdb|1GP1|A Chain A, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
pdb|1GP1|B Chain B, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
Length = 198
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 29/169 (17%)
Query: 9 PESIFDLSVKD-ARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLE 67
P +++ S + A G +LS+ +GKVLLI NVAS G T +Y +++ L + +GL
Sbjct: 9 PRTVYAFSARPLAGGEPFNLSSLRGKVLLIENVASLXGTTVRDYTQMNDLQRRLGPRGLV 68
Query: 68 ILAFPCNQFGEEEPGSNDQIADFVCTR-------FKSEFPIFEKIDVNGEHASPLYKLLK 120
+L FPCNQFG +E N++I + C + F+ F +FEK +VNGE A PL+ L+
Sbjct: 69 VLGFPCNQFGHQENAKNEEILN--CLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLR 126
Query: 121 SG------------------KWG-IFGDDIQWNFAKFLVDKNGQVVDRY 150
W + +D+ WNF KFLV +G V RY
Sbjct: 127 EVLPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRY 175
>pdb|2F8A|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
pdb|2F8A|B Chain B, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
Length = 208
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 25/171 (14%)
Query: 5 FIQNPESIFDLSVKD-ARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD 63
+ Q+ +S++ S + A G V L + +GKVLLI NVAS G T +Y ++++L +
Sbjct: 19 YFQSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGP 78
Query: 64 QGLEILAFPCNQFGEEEPGSNDQIADFV-----CTRFKSEFPIFEKIDVNGEHASPLYKL 118
+GL +L FPCNQFG +E N++I + + F+ F +FEK +VNG A PL+
Sbjct: 79 RGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAF 138
Query: 119 LKSG------------------KWG-IFGDDIQWNFAKFLVDKNGQVVDRY 150
L+ W + +D+ WNF KFLV +G + RY
Sbjct: 139 LREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRY 189
>pdb|2I3Y|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 5
Length = 215
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 82/157 (52%), Gaps = 21/157 (13%)
Query: 25 VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN 84
V Y GK +L VNVA+ CG+T + Y EL+ L ++ K GL +L FPCNQFG++EPG N
Sbjct: 49 VSFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDN 107
Query: 85 DQIADFV-----CTRFKSEFPIFEKIDVNGE--------------HASPLYKLLKSGKW- 124
+I + F F +FEK DVNGE H S + KS W
Sbjct: 108 KEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWD 167
Query: 125 GIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161
+ DI+WNF KFLV +G V R+ ++ S++
Sbjct: 168 PVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKT 204
>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Glutathionine Peroxidase 2 (Gpx2)
Length = 208
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 25/175 (14%)
Query: 10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEIL 69
+S +DLS + G +VD +T++G+ +LI NVAS CG T ++ +L++L ++ + L +L
Sbjct: 26 KSFYDLSAINLDGEKVDFNTFRGRAVLIENVASLCGTTTRDFTQLNELQCRFPRR-LVVL 84
Query: 70 AFPCNQFGEEEPGSNDQIADFV-----CTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKW 124
FPCNQFG +E N++I + + ++ F + +K +VNG++ P++ LK
Sbjct: 85 GFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 144
Query: 125 GIFGD-------------------DIQWNFAKFLVDKNGQVVDRYYPTTSLLSLE 160
+ D D+ WNF KFL+ G+ RY T +++E
Sbjct: 145 YPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIE 199
>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
pdb|2R37|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
Length = 207
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 88/172 (51%), Gaps = 22/172 (12%)
Query: 11 SIFDLSVKDARGHE-VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEIL 69
+I++ G E + Y GK +L VNVAS G+T YIEL+ L ++ GL IL
Sbjct: 16 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVIL 74
Query: 70 AFPCNQFGEEEPGSNDQIADFV-----CTRFKSEFPIFEKIDVNGEHASPLYKLLKSG-- 122
FPCNQFG++EPG N +I + F F +FEK DVNGE Y LK+
Sbjct: 75 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 134
Query: 123 -KWGIFG------------DDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161
+ G DI+WNF KFLV +G + R++ T++ ++++
Sbjct: 135 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKM 186
>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like
Protein Bvu_1432 From Bacteroides Vulgatus
Length = 152
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 16/105 (15%)
Query: 11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
SI D+ +KD +G+ L+ KGKV+LI M+ ++ + L +LY+KY QG EI
Sbjct: 14 SIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQ 73
Query: 71 FPCNQFGEEE--PGSNDQIADFVCTRFKSEFPIFEKIDVNGEHAS 113
+ G+E S D + +VC R D NG ++S
Sbjct: 74 ISLD--GDEHFWKTSADNLP-WVCVR-----------DANGAYSS 104
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 9 PESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEI 68
P + DL+ +DA G LS ++GK LL+ A+ C L +L K E+
Sbjct: 37 PLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEV 96
Query: 69 LAFPCNQFGEEEP 81
+A + E+P
Sbjct: 97 VAINIDTRDPEKP 109
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 32.7 bits (73), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLE 67
NP S S D G V L+ KGK + I A+ CG L +L +KY + +
Sbjct: 7 NP-SAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIH 65
Query: 68 ILAFPCNQ 75
++ C++
Sbjct: 66 FVSLSCDK 73
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 17 VKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
++D G ++LS KGK + + + C + ++ Y +K QG+EI+A
Sbjct: 11 LEDTNGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 17 VKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
++D G ++LS KGK + + + C + ++ Y +K QG+EI+A
Sbjct: 11 LEDTNGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 17 VKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
++D G ++LS KGK + + + C + ++ Y +K QG+EI+A
Sbjct: 8 LEDTNGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVA 61
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 17 VKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
++D G ++LS KGK + + + C + ++ Y +K QG+EI+A
Sbjct: 11 LEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVA 64
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 17 VKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
++D G ++LS KGK + + + C + ++ Y +K QG+EI+A
Sbjct: 11 LEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 17 VKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
++D G ++LS KGK + + + C + + Y +K QG+EI+A
Sbjct: 11 LEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQGVEIVA 64
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of
Thiol-Disulfide Oxidoreductase Bvu-2223 (Target
Efi-501010) From Bacteroides Vulgatus
Length = 152
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 19 DARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGE 78
D +G+ V L+ +KGK +L+ + C L + Y+ +KD+G I ++ E
Sbjct: 16 DLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREE 75
Query: 79 E 79
+
Sbjct: 76 D 76
>pdb|2HYX|A Chain A, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|B Chain B, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|C Chain C, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|D Chain D, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
Length = 352
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 25 VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFG-EEEPGS 83
+DL + +GKV+LI A C + Y YKD GL ++ ++ E+ PG+
Sbjct: 75 IDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGN 134
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 14 DLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSN--YIELSQLYDKYKDQG 65
D ++ G +V LS+ +GKV+++ AS CG+ +IE ++ K+KD
Sbjct: 15 DFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIE-KDIWLKHKDNA 67
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 25 VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
V LS G V+ + AS CG ++ +Q KYK +G +++A
Sbjct: 21 VKLSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVA 66
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 26/135 (19%)
Query: 2 TSQFIQNPESIFDLSVKDARGHEVDLSTYK----GKVLLIVNVASKCGMTNSNYIELSQL 57
TSQ Q + + ++ +DA GH + L T+K G L+ M +S+ LS+L
Sbjct: 119 TSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDY-------MHDSDNKALSKL 171
Query: 58 YDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV-CTRFKSEFPIFEKIDVNGEH-ASPL 115
G I AF G + +DQ+ + + C E + EK NG+H + L
Sbjct: 172 VAAC---GGRICAFNNRAEGSNQ---DDQVKELMDCI----EDLLMEK---NGDHYTNGL 218
Query: 116 YKLLKSGKWGIFGDD 130
Y L++ K G G D
Sbjct: 219 YSLIQRSKCGPVGSD 233
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 26/135 (19%)
Query: 2 TSQFIQNPESIFDLSVKDARGHEVDLSTYK----GKVLLIVNVASKCGMTNSNYIELSQL 57
TSQ Q + + ++ +DA GH + L T+K G L+ M +S+ LS+L
Sbjct: 99 TSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDY-------MHDSDNKALSKL 151
Query: 58 YDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV-CTRFKSEFPIFEKIDVNGEH-ASPL 115
G I AF G + +DQ+ + + C E + EK NG+H + L
Sbjct: 152 VAAC---GGRICAFNNRAEGSNQ---DDQVKELMDCI----EDLLMEK---NGDHYTNGL 198
Query: 116 YKLLKSGKWGIFGDD 130
Y L++ K G G D
Sbjct: 199 YSLIQRSKCGPVGSD 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,133,819
Number of Sequences: 62578
Number of extensions: 215998
Number of successful extensions: 504
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 44
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)