Query 031257
Match_columns 163
No_of_seqs 107 out of 1426
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 11:32:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00056 glutathione peroxidas 100.0 3.5E-33 7.7E-38 199.3 16.3 157 5-162 12-173 (199)
2 PLN02399 phospholipid hydroper 100.0 2.5E-33 5.4E-38 203.4 15.1 157 7-163 74-230 (236)
3 cd00340 GSH_Peroxidase Glutath 100.0 1.8E-32 3.9E-37 188.4 17.1 152 11-163 1-152 (152)
4 PLN02412 probable glutathione 100.0 1.4E-32 3.1E-37 191.5 16.3 155 8-162 5-159 (167)
5 PRK10606 btuE putative glutath 100.0 6.7E-32 1.5E-36 189.6 16.3 152 10-162 3-176 (183)
6 PTZ00256 glutathione peroxidas 100.0 1.6E-31 3.5E-36 188.9 16.1 154 7-162 15-176 (183)
7 TIGR02540 gpx7 putative glutat 100.0 1.5E-30 3.3E-35 179.0 15.1 146 12-162 2-148 (153)
8 COG0386 BtuE Glutathione perox 100.0 2.4E-29 5.2E-34 167.1 14.5 152 10-162 3-155 (162)
9 PF08534 Redoxin: Redoxin; In 100.0 1.6E-28 3.5E-33 167.6 10.1 140 7-162 1-145 (146)
10 KOG1651 Glutathione peroxidase 100.0 7.5E-27 1.6E-31 157.0 14.1 154 8-161 10-163 (171)
11 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 5.5E-27 1.2E-31 155.6 11.4 123 8-149 1-124 (124)
12 COG1225 Bcp Peroxiredoxin [Pos 99.9 1.4E-26 3.1E-31 157.0 12.6 141 5-160 3-146 (157)
13 cd03017 PRX_BCP Peroxiredoxin 99.9 1E-26 2.2E-31 157.5 11.9 138 10-163 1-139 (140)
14 PRK09437 bcp thioredoxin-depen 99.9 3.1E-26 6.7E-31 157.7 12.7 142 5-161 3-147 (154)
15 PRK15412 thiol:disulfide inter 99.9 2.2E-26 4.8E-31 162.9 10.4 130 6-162 39-171 (185)
16 PRK03147 thiol-disulfide oxido 99.9 1.4E-25 3E-30 157.1 12.8 135 4-162 33-167 (173)
17 cd03018 PRX_AhpE_like Peroxire 99.9 2.2E-25 4.7E-30 152.5 13.0 130 6-154 1-134 (149)
18 PRK00522 tpx lipid hydroperoxi 99.9 2.7E-25 5.8E-30 155.0 13.4 131 5-152 17-149 (167)
19 cd03014 PRX_Atyp2cys Peroxired 99.9 2.9E-25 6.3E-30 151.0 13.0 126 8-154 2-130 (143)
20 cd03010 TlpA_like_DsbE TlpA-li 99.9 3.6E-25 7.9E-30 147.7 11.0 123 11-159 2-126 (127)
21 cd02969 PRX_like1 Peroxiredoxi 99.9 5.4E-25 1.2E-29 154.0 12.0 125 9-150 1-126 (171)
22 cd03015 PRX_Typ2cys Peroxiredo 99.9 5.7E-25 1.2E-29 154.2 11.7 129 8-154 1-140 (173)
23 cd03012 TlpA_like_DipZ_like Tl 99.9 6.1E-25 1.3E-29 146.5 11.3 113 22-153 13-125 (126)
24 TIGR00385 dsbE periplasmic pro 99.9 5.5E-25 1.2E-29 154.2 10.2 130 6-162 34-166 (173)
25 PRK13190 putative peroxiredoxi 99.9 7.3E-25 1.6E-29 157.0 10.9 126 6-150 2-133 (202)
26 TIGR03137 AhpC peroxiredoxin. 99.9 1.6E-24 3.5E-29 153.6 10.9 129 7-153 3-138 (187)
27 cd02971 PRX_family Peroxiredox 99.9 6.7E-24 1.5E-28 143.6 12.6 129 11-155 1-131 (140)
28 cd02968 SCO SCO (an acronym fo 99.9 5.6E-24 1.2E-28 144.3 10.2 134 11-152 1-142 (142)
29 TIGR02661 MauD methylamine deh 99.9 1.2E-23 2.5E-28 149.4 11.6 127 5-161 45-173 (189)
30 PRK14018 trifunctional thiored 99.9 9.8E-24 2.1E-28 167.7 12.0 137 6-163 32-169 (521)
31 PRK13599 putative peroxiredoxi 99.9 2.5E-23 5.3E-28 150.1 12.1 128 7-151 3-136 (215)
32 cd02970 PRX_like2 Peroxiredoxi 99.9 2.3E-23 4.9E-28 142.3 11.1 127 11-152 1-148 (149)
33 cd03008 TryX_like_RdCVF Trypar 99.9 7.9E-24 1.7E-28 143.4 8.3 106 23-149 16-128 (146)
34 cd03016 PRX_1cys Peroxiredoxin 99.9 1.7E-23 3.6E-28 150.1 10.4 130 8-154 1-137 (203)
35 cd02967 mauD Methylamine utili 99.9 7.5E-23 1.6E-27 133.9 12.6 110 13-150 1-112 (114)
36 PRK13191 putative peroxiredoxi 99.9 1.8E-23 4E-28 150.8 10.2 131 6-153 7-143 (215)
37 PRK10382 alkyl hydroperoxide r 99.9 4.2E-23 9.1E-28 145.8 11.7 130 6-153 2-138 (187)
38 PTZ00253 tryparedoxin peroxida 99.9 5.3E-23 1.2E-27 147.2 10.7 136 1-154 1-147 (199)
39 PRK15000 peroxidase; Provision 99.9 9.7E-23 2.1E-27 145.6 11.9 131 7-155 3-146 (200)
40 PRK13189 peroxiredoxin; Provis 99.9 1E-22 2.2E-27 147.6 11.5 130 5-152 8-144 (222)
41 PLN02919 haloacid dehalogenase 99.9 7.1E-23 1.5E-27 175.5 11.4 138 6-162 391-531 (1057)
42 cd03011 TlpA_like_ScsD_MtbDsbE 99.9 2E-22 4.2E-27 133.6 10.8 121 13-162 1-121 (123)
43 PTZ00137 2-Cys peroxiredoxin; 99.9 3.6E-22 7.9E-27 146.9 12.1 127 6-151 68-205 (261)
44 TIGR01626 ytfJ_HI0045 conserve 99.9 1.3E-22 2.9E-27 141.9 9.1 132 6-161 23-174 (184)
45 cd02966 TlpA_like_family TlpA- 99.9 1.4E-21 3E-26 126.9 12.1 116 14-152 1-116 (116)
46 cd02964 TryX_like_family Trypa 99.9 5.2E-22 1.1E-26 133.3 7.4 112 20-152 4-118 (132)
47 cd03009 TryX_like_TryX_NRX Try 99.9 1E-21 2.3E-26 131.6 6.6 112 17-151 3-117 (131)
48 PRK13728 conjugal transfer pro 99.9 2.2E-21 4.7E-26 135.2 8.1 115 8-162 51-166 (181)
49 cd03013 PRX5_like Peroxiredoxi 99.8 1.9E-20 4E-25 129.0 10.2 131 8-154 1-141 (155)
50 COG0450 AhpC Peroxiredoxin [Po 99.8 3E-20 6.5E-25 128.9 9.4 131 6-151 3-141 (194)
51 PF00255 GSHPx: Glutathione pe 99.8 1E-18 2.2E-23 112.3 12.3 108 12-120 1-108 (108)
52 PF13905 Thioredoxin_8: Thiore 99.8 9.8E-20 2.1E-24 115.4 6.4 94 32-146 1-95 (95)
53 PF02630 SCO1-SenC: SCO1/SenC; 99.8 5.1E-19 1.1E-23 124.0 8.9 137 8-152 28-173 (174)
54 TIGR02738 TrbB type-F conjugat 99.7 4E-18 8.6E-23 116.7 7.0 104 22-162 44-148 (153)
55 COG1999 Uncharacterized protei 99.7 1.3E-15 2.7E-20 109.4 14.0 141 14-161 49-198 (207)
56 cd02950 TxlA TRX-like protein 99.7 9.6E-17 2.1E-21 109.0 6.4 101 17-162 3-105 (142)
57 KOG0855 Alkyl hydroperoxide re 99.7 6.8E-16 1.5E-20 104.2 8.5 134 5-156 62-197 (211)
58 cd02985 TRX_CDSP32 TRX family, 99.6 5.1E-15 1.1E-19 95.2 8.5 86 29-161 12-97 (103)
59 KOG2501 Thioredoxin, nucleored 99.6 7.3E-15 1.6E-19 99.2 7.1 114 15-149 15-131 (157)
60 TIGR02740 TraF-like TraF-like 99.5 7.5E-15 1.6E-19 109.5 5.3 102 23-162 157-259 (271)
61 COG2077 Tpx Peroxiredoxin [Pos 99.5 3E-13 6.4E-18 90.2 10.4 129 4-151 16-148 (158)
62 cd02953 DsbDgamma DsbD gamma f 99.5 1E-13 2.2E-18 89.2 7.7 90 31-163 10-103 (104)
63 KOG0854 Alkyl hydroperoxide re 99.5 8.5E-14 1.9E-18 94.9 7.4 140 1-149 1-146 (224)
64 cd02999 PDI_a_ERp44_like PDIa 99.5 8.7E-14 1.9E-18 89.0 7.1 87 28-163 14-100 (100)
65 KOG2792 Putative cytochrome C 99.5 1.5E-13 3.3E-18 99.0 7.6 139 13-161 120-269 (280)
66 cd02956 ybbN ybbN protein fami 99.5 3.4E-13 7.3E-18 85.4 8.2 85 31-163 11-95 (96)
67 KOG0852 Alkyl hydroperoxide re 99.5 5E-13 1.1E-17 91.1 8.9 126 7-150 5-140 (196)
68 cd02963 TRX_DnaJ TRX domain, D 99.5 3.6E-13 7.9E-18 87.7 7.8 86 30-162 22-107 (111)
69 cd02948 TRX_NDPK TRX domain, T 99.5 3.5E-13 7.7E-18 86.5 7.6 44 31-74 16-59 (102)
70 PF13098 Thioredoxin_2: Thiore 99.5 5.4E-14 1.2E-18 91.5 3.5 106 31-163 4-112 (112)
71 cd02954 DIM1 Dim1 family; Dim1 99.4 9.3E-13 2E-17 85.5 8.5 82 31-160 13-94 (114)
72 cd02951 SoxW SoxW family; SoxW 99.4 6.5E-13 1.4E-17 88.2 6.9 98 31-162 12-114 (125)
73 PHA02278 thioredoxin-like prot 99.4 1.8E-12 3.9E-17 83.2 7.7 87 31-161 13-99 (103)
74 KOG0910 Thioredoxin-like prote 99.4 1.2E-12 2.6E-17 87.8 6.5 84 31-162 60-143 (150)
75 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 1.4E-12 2.9E-17 83.5 6.4 93 21-161 7-99 (101)
76 PRK09381 trxA thioredoxin; Pro 99.4 2.4E-12 5.1E-17 83.4 7.4 84 31-162 20-103 (109)
77 TIGR01295 PedC_BrcD bacterioci 99.4 7.4E-12 1.6E-16 82.8 9.8 97 31-162 22-119 (122)
78 cd03004 PDI_a_ERdj5_C PDIa fam 99.4 6.4E-12 1.4E-16 80.7 8.9 86 31-163 18-104 (104)
79 cd02994 PDI_a_TMX PDIa family, 99.3 5.1E-12 1.1E-16 80.7 7.0 83 31-162 16-98 (101)
80 cd02993 PDI_a_APS_reductase PD 99.3 1.1E-11 2.4E-16 80.4 7.7 88 31-162 20-108 (109)
81 cd03005 PDI_a_ERp46 PDIa famil 99.3 5.4E-12 1.2E-16 80.5 6.2 84 33-163 17-102 (102)
82 cd02949 TRX_NTR TRX domain, no 99.3 1.7E-11 3.8E-16 77.8 8.0 85 31-163 12-96 (97)
83 PRK10996 thioredoxin 2; Provis 99.3 7.3E-12 1.6E-16 84.7 6.2 84 31-162 51-134 (139)
84 cd03006 PDI_a_EFP1_N PDIa fami 99.3 1.6E-11 3.5E-16 80.1 7.5 84 31-161 28-111 (113)
85 cd03002 PDI_a_MPD1_like PDI fa 99.3 1.6E-11 3.5E-16 79.3 6.7 87 31-162 17-107 (109)
86 cd02997 PDI_a_PDIR PDIa family 99.2 2.1E-11 4.6E-16 78.0 5.8 88 31-163 16-104 (104)
87 KOG0907 Thioredoxin [Posttrans 99.2 5.1E-11 1.1E-15 76.7 7.3 81 31-161 20-100 (106)
88 cd03000 PDI_a_TMX3 PDIa family 99.2 3.7E-11 7.9E-16 77.2 6.2 44 31-74 14-59 (104)
89 cd02959 ERp19 Endoplasmic reti 99.2 2.4E-11 5.2E-16 79.8 5.2 47 27-74 14-60 (117)
90 TIGR01126 pdi_dom protein disu 99.2 5.2E-11 1.1E-15 75.8 6.5 84 31-161 12-96 (102)
91 COG3118 Thioredoxin domain-con 99.2 6E-11 1.3E-15 87.7 7.3 84 31-162 42-125 (304)
92 cd02996 PDI_a_ERp44 PDIa famil 99.2 5.3E-11 1.2E-15 77.0 6.2 86 31-163 17-108 (108)
93 cd02962 TMX2 TMX2 family; comp 99.2 1.7E-10 3.6E-15 79.0 8.5 44 31-74 46-89 (152)
94 PLN00410 U5 snRNP protein, DIM 99.2 1.3E-10 2.7E-15 78.4 7.6 43 31-74 22-64 (142)
95 TIGR01068 thioredoxin thioredo 99.2 1.2E-10 2.7E-15 73.8 7.2 83 32-162 14-96 (101)
96 cd02984 TRX_PICOT TRX domain, 99.2 2.2E-10 4.7E-15 72.4 8.0 41 32-73 14-54 (97)
97 PTZ00051 thioredoxin; Provisio 99.2 2E-10 4.3E-15 72.8 7.4 42 31-74 17-58 (98)
98 PF00085 Thioredoxin: Thioredo 99.1 1.4E-10 3E-15 73.9 6.5 83 32-162 17-99 (103)
99 cd02998 PDI_a_ERp38 PDIa famil 99.1 1.8E-10 3.9E-15 73.6 6.8 87 32-163 18-105 (105)
100 PRK00293 dipZ thiol:disulfide 99.1 2.2E-10 4.7E-15 93.7 7.7 89 30-162 472-565 (571)
101 cd02961 PDI_a_family Protein D 99.1 3.4E-10 7.4E-15 71.4 6.7 87 31-163 14-101 (101)
102 cd02986 DLP Dim1 family, Dim1- 99.1 1E-09 2.3E-14 70.9 8.7 43 31-74 13-55 (114)
103 cd02965 HyaE HyaE family; HyaE 99.1 9.2E-10 2E-14 71.1 8.3 83 31-161 26-110 (111)
104 PTZ00443 Thioredoxin domain-co 99.1 3.7E-10 7.9E-15 82.0 7.2 82 32-161 52-133 (224)
105 cd02995 PDI_a_PDI_a'_C PDIa fa 99.1 4.8E-10 1E-14 71.6 6.9 44 31-74 17-61 (104)
106 cd02955 SSP411 TRX domain, SSP 99.0 2.9E-09 6.3E-14 70.5 8.9 46 28-74 11-59 (124)
107 cd02957 Phd_like Phosducin (Ph 99.0 3.9E-09 8.5E-14 68.8 9.1 41 32-74 24-64 (113)
108 cd03001 PDI_a_P5 PDIa family, 99.0 1.6E-09 3.4E-14 69.1 7.0 42 32-74 18-59 (103)
109 cd02989 Phd_like_TxnDC9 Phosdu 99.0 6.8E-09 1.5E-13 67.8 9.0 42 31-74 21-62 (113)
110 PTZ00102 disulphide isomerase; 99.0 1.2E-09 2.7E-14 87.6 5.9 100 17-162 359-460 (477)
111 cd02952 TRP14_like Human TRX-r 98.9 3.5E-09 7.5E-14 69.5 6.7 43 31-74 20-69 (119)
112 cd03065 PDI_b_Calsequestrin_N 98.9 4.7E-09 1E-13 69.0 7.3 82 33-162 28-114 (120)
113 cd02947 TRX_family TRX family; 98.9 7E-09 1.5E-13 64.1 7.7 83 32-163 10-92 (93)
114 PF00837 T4_deiodinase: Iodoth 98.9 4.3E-09 9.4E-14 76.0 6.7 138 6-162 73-232 (237)
115 cd02988 Phd_like_VIAF Phosduci 98.9 5.1E-09 1.1E-13 74.4 6.8 40 32-73 102-141 (192)
116 PF13728 TraF: F plasmid trans 98.9 6.7E-09 1.5E-13 75.1 6.7 99 27-163 115-214 (215)
117 cd02987 Phd_like_Phd Phosducin 98.9 1.2E-08 2.7E-13 71.5 7.8 40 33-74 84-123 (175)
118 TIGR00411 redox_disulf_1 small 98.8 2.1E-08 4.6E-13 61.2 7.2 39 35-74 2-40 (82)
119 TIGR00424 APS_reduc 5'-adenyly 98.8 1.3E-08 2.7E-13 81.0 7.3 44 31-74 370-413 (463)
120 cd02992 PDI_a_QSOX PDIa family 98.8 3.4E-08 7.3E-13 64.5 7.8 43 32-74 19-63 (114)
121 TIGR02739 TraF type-F conjugat 98.8 1.4E-08 3E-13 74.9 6.2 98 27-162 145-243 (256)
122 cd02975 PfPDO_like_N Pyrococcu 98.8 3.4E-08 7.3E-13 64.5 7.2 41 32-74 22-62 (113)
123 cd02958 UAS UAS family; UAS is 98.8 8.1E-08 1.8E-12 62.7 8.5 90 28-162 13-106 (114)
124 PRK13703 conjugal pilus assemb 98.7 2.4E-08 5.3E-13 73.2 6.1 98 27-162 138-236 (248)
125 TIGR00412 redox_disulf_2 small 98.7 1.1E-07 2.4E-12 57.5 6.9 36 36-72 2-37 (76)
126 PLN02309 5'-adenylylsulfate re 98.7 7.5E-08 1.6E-12 76.6 7.6 44 31-74 364-407 (457)
127 TIGR01130 ER_PDI_fam protein d 98.6 8.3E-08 1.8E-12 76.5 6.9 44 31-74 17-62 (462)
128 cd02960 AGR Anterior Gradient 98.6 2E-07 4.3E-12 62.0 6.8 24 31-54 22-45 (130)
129 PTZ00102 disulphide isomerase; 98.6 7.2E-08 1.6E-12 77.4 5.6 44 31-74 48-93 (477)
130 KOG0908 Thioredoxin-like prote 98.6 1.8E-07 3.8E-12 67.8 6.2 45 28-74 17-61 (288)
131 PTZ00062 glutaredoxin; Provisi 98.6 2.3E-07 5E-12 66.4 6.6 38 33-72 18-55 (204)
132 cd02982 PDI_b'_family Protein 98.6 2.8E-07 6.1E-12 58.7 6.5 42 32-74 12-53 (103)
133 PF14595 Thioredoxin_9: Thiore 98.5 4.8E-08 1E-12 65.2 2.0 82 28-154 37-118 (129)
134 TIGR01130 ER_PDI_fam protein d 98.5 3.7E-07 8.1E-12 72.8 7.4 44 31-74 363-408 (462)
135 COG0526 TrxA Thiol-disulfide i 98.4 5.9E-07 1.3E-11 57.4 5.7 50 24-74 24-73 (127)
136 TIGR02187 GlrX_arch Glutaredox 98.4 9.8E-07 2.1E-11 63.9 7.3 45 28-74 15-62 (215)
137 PF09695 YtfJ_HI0045: Bacteria 98.4 9.1E-06 2E-10 55.3 11.1 140 7-163 2-154 (160)
138 TIGR02187 GlrX_arch Glutaredox 98.4 1.8E-06 3.9E-11 62.5 7.5 42 31-74 132-173 (215)
139 cd03026 AhpF_NTD_C TRX-GRX-lik 98.3 5.4E-06 1.2E-10 51.7 7.6 45 28-74 8-52 (89)
140 PF04592 SelP_N: Selenoprotein 98.3 8.6E-06 1.9E-10 58.8 9.1 106 24-151 18-127 (238)
141 smart00594 UAS UAS domain. 98.3 8.8E-06 1.9E-10 53.7 8.1 89 30-163 25-121 (122)
142 PF05988 DUF899: Bacterial pro 98.2 3.9E-05 8.5E-10 54.7 10.9 88 6-103 40-135 (211)
143 PF13899 Thioredoxin_7: Thiore 98.2 7.7E-06 1.7E-10 50.1 6.4 43 31-74 16-61 (82)
144 KOG0190 Protein disulfide isom 98.2 2.8E-06 6E-11 67.8 4.9 42 32-73 42-85 (493)
145 PHA02125 thioredoxin-like prot 98.2 1E-05 2.2E-10 48.8 6.4 22 36-57 2-23 (75)
146 COG0678 AHP1 Peroxiredoxin [Po 98.0 4.5E-05 9.8E-10 51.3 7.7 132 6-151 3-146 (165)
147 TIGR02196 GlrX_YruB Glutaredox 98.0 6E-05 1.3E-09 44.4 7.6 32 36-74 2-33 (74)
148 COG4232 Thiol:disulfide interc 98.0 1.1E-05 2.3E-10 65.3 4.9 89 31-161 473-562 (569)
149 cd02973 TRX_GRX_like Thioredox 98.0 4E-05 8.7E-10 44.8 6.0 38 35-74 2-39 (67)
150 PF05176 ATP-synt_10: ATP10 pr 98.0 4.8E-05 1E-09 56.3 7.6 131 9-161 98-244 (252)
151 cd01659 TRX_superfamily Thiore 97.8 0.0001 2.3E-09 41.4 6.4 37 36-74 1-37 (69)
152 KOG0190 Protein disulfide isom 97.7 5.3E-05 1.1E-09 60.7 4.8 43 31-73 383-426 (493)
153 COG2143 Thioredoxin-related pr 97.6 0.00048 1E-08 46.8 7.4 101 30-162 40-144 (182)
154 cd03007 PDI_a_ERp29_N PDIa fam 97.6 0.00041 9E-09 45.3 6.6 42 31-74 17-60 (116)
155 KOG0191 Thioredoxin/protein di 97.5 0.00026 5.6E-09 55.7 6.2 43 31-74 46-88 (383)
156 TIGR02180 GRX_euk Glutaredoxin 97.5 0.00033 7.1E-09 42.6 5.3 47 36-92 1-47 (84)
157 cd02991 UAS_ETEA UAS family, E 97.5 0.00086 1.9E-08 43.9 7.1 85 30-162 15-108 (116)
158 PRK11657 dsbG disulfide isomer 97.5 0.0016 3.5E-08 48.3 9.4 30 31-60 116-145 (251)
159 PF13911 AhpC-TSA_2: AhpC/TSA 97.4 0.0019 4.1E-08 41.9 8.1 88 54-152 2-113 (115)
160 COG4312 Uncharacterized protei 97.3 0.0064 1.4E-07 43.7 9.9 82 15-106 55-144 (247)
161 KOG1731 FAD-dependent sulfhydr 97.1 0.00021 4.6E-09 57.7 1.5 60 33-102 58-120 (606)
162 PF03190 Thioredox_DsbH: Prote 97.1 0.0014 3E-08 45.3 5.2 88 20-149 25-118 (163)
163 TIGR02200 GlrX_actino Glutared 97.0 0.0025 5.5E-08 37.8 5.5 32 36-74 2-33 (77)
164 KOG0912 Thiol-disulfide isomer 97.0 0.00092 2E-08 50.3 4.1 43 32-74 13-59 (375)
165 KOG3425 Uncharacterized conser 97.0 0.0019 4E-08 42.0 4.9 47 27-74 19-74 (128)
166 PF13778 DUF4174: Domain of un 97.0 0.0082 1.8E-07 39.4 8.0 103 27-162 3-107 (118)
167 KOG0541 Alkyl hydroperoxide re 97.0 0.015 3.3E-07 39.7 9.2 98 5-113 8-118 (171)
168 PF06110 DUF953: Eukaryotic pr 97.0 0.0016 3.5E-08 42.7 4.4 42 31-73 18-66 (119)
169 PRK10877 protein disulfide iso 96.8 0.0029 6.2E-08 46.4 5.1 39 31-73 106-144 (232)
170 PRK11200 grxA glutaredoxin 1; 96.6 0.0083 1.8E-07 36.7 5.6 37 36-74 3-39 (85)
171 cd03023 DsbA_Com1_like DsbA fa 96.6 0.0044 9.6E-08 41.8 4.6 41 31-73 4-44 (154)
172 cd03020 DsbA_DsbC_DsbG DsbA fa 96.6 0.012 2.6E-07 41.9 6.8 26 31-56 76-101 (197)
173 PF13462 Thioredoxin_4: Thiore 96.5 0.0073 1.6E-07 41.2 5.3 50 24-74 4-55 (162)
174 PF13192 Thioredoxin_3: Thiore 96.4 0.0069 1.5E-07 36.3 4.3 23 40-62 6-28 (76)
175 PRK11509 hydrogenase-1 operon 96.2 0.067 1.5E-06 35.7 8.3 90 26-162 26-119 (132)
176 KOG4498 Uncharacterized conser 96.2 0.061 1.3E-06 37.9 8.2 55 18-72 35-91 (197)
177 cd02976 NrdH NrdH-redoxin (Nrd 96.0 0.036 7.8E-07 32.1 5.9 32 36-74 2-33 (73)
178 cd03419 GRX_GRXh_1_2_like Glut 96.0 0.023 5E-07 34.1 4.9 34 36-74 2-35 (82)
179 KOG4277 Uncharacterized conser 96.0 0.0026 5.6E-08 48.0 0.7 35 33-67 44-78 (468)
180 PF02114 Phosducin: Phosducin; 95.9 0.083 1.8E-06 39.6 8.5 40 32-73 146-185 (265)
181 KOG0191 Thioredoxin/protein di 95.8 0.011 2.4E-07 46.5 3.9 42 32-73 162-204 (383)
182 cd03418 GRX_GRXb_1_3_like Glut 95.7 0.066 1.4E-06 31.5 6.1 32 36-74 2-33 (75)
183 TIGR02183 GRXA Glutaredoxin, G 95.5 0.056 1.2E-06 33.2 5.5 37 36-74 2-38 (86)
184 COG3054 Predicted transcriptio 95.5 0.031 6.6E-07 38.0 4.4 141 6-163 23-176 (184)
185 cd03019 DsbA_DsbA DsbA family, 95.5 0.031 6.6E-07 38.7 4.7 42 31-73 14-55 (178)
186 PF00462 Glutaredoxin: Glutare 95.5 0.048 1E-06 30.9 4.6 32 36-74 1-32 (60)
187 KOG0914 Thioredoxin-like prote 95.4 0.02 4.2E-07 41.3 3.3 44 31-74 143-186 (265)
188 TIGR02181 GRX_bact Glutaredoxi 95.3 0.065 1.4E-06 32.1 5.1 32 36-74 1-32 (79)
189 COG4545 Glutaredoxin-related p 95.3 0.099 2.1E-06 31.2 5.5 42 37-92 5-46 (85)
190 PHA03050 glutaredoxin; Provisi 95.3 0.041 8.9E-07 35.5 4.3 23 35-57 14-36 (108)
191 cd02066 GRX_family Glutaredoxi 95.2 0.081 1.7E-06 30.4 5.3 32 36-74 2-33 (72)
192 TIGR03143 AhpF_homolog putativ 94.9 0.13 2.9E-06 42.5 7.4 39 32-72 476-514 (555)
193 cd03027 GRX_DEP Glutaredoxin ( 94.7 0.23 5E-06 29.2 6.3 32 36-74 3-34 (73)
194 COG0695 GrxC Glutaredoxin and 94.6 0.17 3.8E-06 30.6 5.7 44 36-92 3-46 (80)
195 TIGR02190 GlrX-dom Glutaredoxi 94.6 0.12 2.6E-06 31.1 4.9 37 31-74 5-41 (79)
196 PF11009 DUF2847: Protein of u 94.4 0.38 8.3E-06 30.8 7.0 58 31-97 18-75 (105)
197 TIGR00365 monothiol glutaredox 94.4 0.22 4.7E-06 31.3 5.9 37 31-74 10-50 (97)
198 cd03028 GRX_PICOT_like Glutare 94.1 0.25 5.5E-06 30.5 5.7 37 31-74 6-46 (90)
199 PRK10329 glutaredoxin-like pro 94.0 0.27 5.8E-06 29.8 5.6 32 36-74 3-34 (81)
200 TIGR02194 GlrX_NrdH Glutaredox 93.6 0.25 5.4E-06 29.0 4.8 31 37-74 2-32 (72)
201 cd02977 ArsC_family Arsenate R 93.2 0.54 1.2E-05 29.8 6.3 48 37-96 2-49 (105)
202 cd02972 DsbA_family DsbA famil 93.1 0.16 3.5E-06 30.9 3.6 38 36-74 1-38 (98)
203 PRK10954 periplasmic protein d 92.9 0.15 3.2E-06 36.7 3.7 52 21-73 24-80 (207)
204 cd03029 GRX_hybridPRX5 Glutare 92.9 0.43 9.4E-06 27.9 5.2 32 36-74 3-34 (72)
205 PRK10638 glutaredoxin 3; Provi 92.8 0.43 9.3E-06 28.8 5.2 32 36-74 4-35 (83)
206 TIGR02189 GlrX-like_plant Glut 92.5 0.34 7.3E-06 30.6 4.5 20 36-55 10-29 (99)
207 PLN03098 LPA1 LOW PSII ACCUMUL 92.3 1.1 2.4E-05 36.1 8.0 65 10-75 274-338 (453)
208 COG1651 DsbG Protein-disulfide 92.1 0.4 8.7E-06 35.2 5.2 46 19-64 71-116 (244)
209 PRK10824 glutaredoxin-4; Provi 92.0 0.67 1.4E-05 30.2 5.4 27 31-57 13-43 (115)
210 KOG0911 Glutaredoxin-related p 91.9 0.14 3E-06 37.1 2.4 42 31-74 16-57 (227)
211 PRK15317 alkyl hydroperoxide r 91.4 1.1 2.3E-05 36.9 7.4 39 32-72 116-154 (517)
212 TIGR01617 arsC_related transcr 90.9 2.2 4.7E-05 27.7 7.2 50 38-99 3-52 (117)
213 PRK10026 arsenate reductase; P 90.8 2.1 4.5E-05 29.0 7.1 93 36-149 4-107 (141)
214 KOG1752 Glutaredoxin and relat 90.8 1.5 3.3E-05 28.0 6.1 45 36-92 16-60 (104)
215 COG1331 Highly conserved prote 89.7 2.2 4.9E-05 36.0 7.7 41 28-74 39-85 (667)
216 KOG0913 Thiol-disulfide isomer 88.1 0.14 3.1E-06 37.3 -0.1 39 34-72 41-79 (248)
217 cd03036 ArsC_like Arsenate Red 87.3 1.1 2.4E-05 28.8 3.7 48 38-97 3-50 (111)
218 KOG3414 Component of the U4/U6 87.0 7 0.00015 26.0 8.2 51 21-72 10-62 (142)
219 PHA03075 glutaredoxin-like pro 86.5 0.67 1.5E-05 30.1 2.3 39 33-71 2-40 (123)
220 PTZ00062 glutaredoxin; Provisi 85.3 3.3 7.1E-05 29.9 5.6 37 31-74 111-151 (204)
221 PRK01655 spxA transcriptional 85.2 1.6 3.4E-05 29.1 3.7 49 37-97 3-51 (131)
222 TIGR03759 conj_TIGR03759 integ 85.1 6.2 0.00013 28.3 6.8 57 33-102 109-165 (200)
223 cd03032 ArsC_Spx Arsenate Redu 84.9 2.4 5.1E-05 27.4 4.4 49 38-98 4-52 (115)
224 cd03035 ArsC_Yffb Arsenate Red 84.3 2.1 4.5E-05 27.3 3.9 48 37-96 2-49 (105)
225 KOG4614 Inner membrane protein 83.1 0.98 2.1E-05 33.1 2.1 27 136-162 250-276 (287)
226 cd02983 P5_C P5 family, C-term 82.8 5.3 0.00011 26.5 5.5 42 33-74 21-66 (130)
227 PF13848 Thioredoxin_6: Thiore 82.6 4.8 0.0001 27.6 5.5 38 35-73 98-135 (184)
228 PRK12559 transcriptional regul 82.4 3.3 7.3E-05 27.5 4.4 50 36-97 2-51 (131)
229 TIGR03140 AhpF alkyl hydropero 81.8 4.5 9.9E-05 33.2 5.8 40 31-72 116-155 (515)
230 PF06053 DUF929: Domain of unk 78.3 3.8 8.2E-05 30.5 3.9 33 31-63 57-89 (249)
231 PF07976 Phe_hydrox_dim: Pheno 77.1 9.2 0.0002 26.6 5.4 70 4-73 28-115 (169)
232 PF02966 DIM1: Mitosis protein 76.8 9.5 0.00021 25.5 5.0 43 31-74 19-61 (133)
233 PRK13344 spxA transcriptional 76.6 7.1 0.00015 26.0 4.5 50 38-99 4-53 (132)
234 KOG3170 Conserved phosducin-li 75.5 7.3 0.00016 28.1 4.5 41 31-73 110-150 (240)
235 TIGR03143 AhpF_homolog putativ 74.5 16 0.00035 30.4 7.1 43 28-72 362-404 (555)
236 PF01323 DSBA: DSBA-like thior 73.8 5.1 0.00011 27.8 3.5 39 35-73 1-39 (193)
237 PF05768 DUF836: Glutaredoxin- 72.1 5.8 0.00013 23.8 3.0 52 36-102 2-53 (81)
238 PRK12759 bifunctional gluaredo 70.6 8.6 0.00019 30.8 4.4 32 36-74 4-35 (410)
239 cd02979 PHOX_C FAD-dependent P 69.6 34 0.00075 23.7 8.9 48 9-56 1-53 (167)
240 cd03025 DsbA_FrnE_like DsbA fa 69.3 7.1 0.00015 27.2 3.4 27 36-62 3-29 (193)
241 PF06764 DUF1223: Protein of u 66.0 19 0.00041 25.9 5.0 37 36-75 1-38 (202)
242 PF06953 ArsD: Arsenical resis 65.8 16 0.00035 24.1 4.2 27 48-74 23-49 (123)
243 KOG1672 ATP binding protein [P 65.7 20 0.00044 25.7 4.9 41 31-73 83-123 (211)
244 KOG2116 Protein involved in pl 65.3 46 0.00099 28.5 7.6 23 52-74 561-583 (738)
245 TIGR00995 3a0901s06TIC22 chlor 63.1 55 0.0012 24.8 7.1 76 9-102 79-157 (270)
246 KOG2507 Ubiquitin regulatory p 61.9 48 0.001 26.8 6.8 32 130-161 74-105 (506)
247 PF13743 Thioredoxin_5: Thiore 52.7 18 0.00039 25.3 3.0 33 38-71 2-34 (176)
248 TIGR00014 arsC arsenate reduct 51.9 36 0.00079 21.8 4.2 48 38-97 3-50 (114)
249 cd03033 ArsC_15kD Arsenate Red 50.8 41 0.00088 21.7 4.2 48 37-96 3-50 (113)
250 KOG0780 Signal recognition par 49.6 1E+02 0.0022 25.0 6.8 68 21-99 88-159 (483)
251 KOG1201 Hydroxysteroid 17-beta 49.4 85 0.0018 24.2 6.2 106 26-161 32-140 (300)
252 COG1535 EntB Isochorismate hyd 49.4 15 0.00033 26.1 2.1 37 36-72 42-78 (218)
253 cd03034 ArsC_ArsC Arsenate Red 48.9 69 0.0015 20.4 6.4 48 38-97 3-50 (112)
254 PF14307 Glyco_tran_WbsX: Glyc 47.5 55 0.0012 25.5 5.2 43 31-73 157-199 (345)
255 cd03060 GST_N_Omega_like GST_N 47.5 19 0.00041 20.6 2.1 31 38-73 3-33 (71)
256 PF05673 DUF815: Protein of un 47.3 1.1E+02 0.0023 23.0 6.3 71 41-123 60-131 (249)
257 COG3011 Predicted thiol-disulf 46.8 89 0.0019 21.1 5.8 38 32-72 6-43 (137)
258 PF01106 NifU: NifU-like domai 46.5 58 0.0013 18.9 5.2 43 21-63 15-61 (68)
259 PRK14324 glmM phosphoglucosami 46.4 1.1E+02 0.0023 24.9 6.9 12 136-147 247-258 (446)
260 COG2179 Predicted hydrolase of 45.4 95 0.0021 21.8 5.5 62 31-101 26-89 (175)
261 PF04723 GRDA: Glycine reducta 44.4 28 0.0006 23.5 2.6 39 35-73 31-76 (150)
262 cd03527 RuBisCO_small Ribulose 43.7 61 0.0013 20.5 4.1 34 39-72 45-84 (99)
263 cd00307 RuBisCO_small_like Rib 43.0 55 0.0012 20.0 3.7 29 44-72 36-69 (84)
264 PF04278 Tic22: Tic22-like fam 42.5 1.2E+02 0.0025 23.1 6.1 59 10-74 73-136 (274)
265 COG1393 ArsC Arsenate reductas 42.1 63 0.0014 21.0 4.1 51 36-98 3-53 (117)
266 PRK10887 glmM phosphoglucosami 41.2 1.9E+02 0.0041 23.4 7.6 13 136-148 243-255 (443)
267 PRK10853 putative reductase; P 40.8 61 0.0013 21.1 3.9 48 37-96 3-50 (118)
268 PF14427 Pput2613-deam: Pput_2 40.6 40 0.00088 21.8 2.9 30 25-54 59-88 (118)
269 PF04134 DUF393: Protein of un 40.3 17 0.00037 23.0 1.2 31 39-72 2-32 (114)
270 PRK14318 glmM phosphoglucosami 40.3 1.6E+02 0.0034 23.9 7.0 13 136-148 247-259 (448)
271 cd03024 DsbA_FrnE DsbA family, 39.5 1.3E+02 0.0028 20.9 6.8 24 39-62 4-27 (201)
272 PRK14316 glmM phosphoglucosami 39.4 2E+02 0.0044 23.2 7.5 12 136-147 245-256 (448)
273 PRK13265 glycine/sarcosine/bet 38.9 39 0.00085 22.8 2.7 39 34-72 31-76 (154)
274 TIGR01455 glmM phosphoglucosam 38.8 1.7E+02 0.0036 23.7 6.9 13 136-148 244-256 (443)
275 PRK14323 glmM phosphoglucosami 38.8 1.9E+02 0.0041 23.4 7.2 13 136-148 245-257 (440)
276 cd05802 GlmM GlmM is a bacteri 38.6 2.1E+02 0.0045 23.0 7.4 13 136-148 241-253 (434)
277 cd03089 PMM_PGM The phosphoman 38.5 1.4E+02 0.003 24.2 6.4 12 136-147 238-249 (443)
278 PF02670 DXP_reductoisom: 1-de 38.5 91 0.002 20.8 4.5 38 56-102 16-53 (129)
279 PF08235 LNS2: LNS2 (Lipin/Ned 38.2 38 0.00083 23.4 2.7 51 16-74 2-52 (157)
280 COG3019 Predicted metal-bindin 37.8 1.3E+02 0.0028 20.5 5.4 34 34-74 26-59 (149)
281 cd03031 GRX_GRX_like Glutaredo 37.7 1.2E+02 0.0027 20.6 5.1 25 43-74 15-39 (147)
282 PRK14315 glmM phosphoglucosami 37.5 2.2E+02 0.0048 23.0 7.6 13 136-148 248-260 (448)
283 COG1370 Prefoldin, molecular c 36.3 46 0.00099 22.8 2.8 25 136-160 116-140 (155)
284 cd08344 MhqB_like_N N-terminal 35.4 54 0.0012 20.3 3.0 19 136-154 93-111 (112)
285 PRK12359 flavodoxin FldB; Prov 35.2 1.3E+02 0.0028 21.0 5.1 36 34-70 48-86 (172)
286 PF07411 DUF1508: Domain of un 34.2 26 0.00056 18.9 1.2 23 136-158 7-29 (49)
287 PF02743 Cache_1: Cache domain 34.2 23 0.00049 20.8 1.0 15 136-150 55-69 (81)
288 COG0300 DltE Short-chain dehyd 33.3 1.3E+02 0.0029 22.7 5.1 17 56-72 21-37 (265)
289 TIGR01616 nitro_assoc nitrogen 33.2 1.1E+02 0.0024 20.1 4.2 46 36-92 3-48 (126)
290 cd03072 PDI_b'_ERp44 PDIb' fam 32.5 1.3E+02 0.0029 19.0 4.7 26 48-74 30-58 (111)
291 COG0541 Ffh Signal recognition 32.4 2.8E+02 0.0061 22.7 7.6 62 31-99 97-158 (451)
292 cd03040 GST_N_mPGES2 GST_N fam 32.4 38 0.00082 19.5 1.8 18 38-55 4-21 (77)
293 PF10589 NADH_4Fe-4S: NADH-ubi 31.7 7.1 0.00015 20.9 -1.4 20 43-62 18-37 (46)
294 COG2607 Predicted ATPase (AAA+ 31.7 2E+02 0.0042 21.9 5.6 74 54-140 102-177 (287)
295 cd03041 GST_N_2GST_N GST_N fam 31.3 1.1E+02 0.0024 17.6 5.8 19 38-56 4-22 (77)
296 cd03051 GST_N_GTT2_like GST_N 31.2 49 0.0011 18.5 2.1 20 38-57 3-22 (74)
297 PF07801 DUF1647: Protein of u 31.2 1.7E+02 0.0036 19.9 4.9 61 13-73 38-99 (142)
298 PRK11867 2-oxoglutarate ferred 31.2 53 0.0011 25.0 2.8 22 39-61 15-36 (286)
299 cd03084 phosphohexomutase The 30.9 2.4E+02 0.0053 21.9 6.5 13 136-148 187-199 (355)
300 PF11211 DUF2997: Protein of u 30.9 56 0.0012 17.6 2.1 16 138-153 3-18 (48)
301 PRK09542 manB phosphomannomuta 30.3 1.9E+02 0.004 23.5 5.9 12 136-147 239-250 (445)
302 PRK14314 glmM phosphoglucosami 30.2 2.9E+02 0.0062 22.4 7.0 12 136-147 249-260 (450)
303 PF12617 LdpA_C: Iron-Sulfur b 30.0 1E+02 0.0023 21.8 3.8 38 50-95 19-58 (183)
304 PF12690 BsuPI: Intracellular 29.9 51 0.0011 19.9 2.1 19 136-154 27-45 (82)
305 PRK14317 glmM phosphoglucosami 29.6 2.2E+02 0.0049 23.2 6.3 13 136-148 260-272 (465)
306 PF06122 TraH: Conjugative rel 29.5 27 0.00058 27.5 1.0 24 41-64 94-117 (361)
307 TIGR02652 conserved hypothetic 29.4 16 0.00034 24.7 -0.3 14 42-55 10-23 (163)
308 PF09654 DUF2396: Protein of u 29.2 16 0.00034 24.6 -0.3 14 42-55 7-20 (161)
309 PF08806 Sep15_SelM: Sep15/Sel 29.2 31 0.00067 20.7 1.0 26 136-161 44-70 (78)
310 PF14903 WG_beta_rep: WG conta 28.9 40 0.00087 16.0 1.3 10 139-148 3-12 (35)
311 PF08874 DUF1835: Domain of un 28.6 1.2E+02 0.0026 19.5 3.9 27 47-73 96-122 (124)
312 PRK14321 glmM phosphoglucosami 28.6 3.1E+02 0.0067 22.2 6.9 13 136-148 238-250 (449)
313 cd03073 PDI_b'_ERp72_ERp57 PDI 28.1 1.7E+02 0.0036 18.7 6.9 25 48-73 34-59 (111)
314 cd02981 PDI_b_family Protein D 27.7 1.4E+02 0.0031 17.8 5.0 35 32-70 17-51 (97)
315 cd05800 PGM_like2 This PGM-lik 27.0 2.1E+02 0.0045 23.2 5.7 12 15-26 109-120 (461)
316 PRK05778 2-oxoglutarate ferred 27.0 65 0.0014 24.8 2.6 10 41-50 18-27 (301)
317 cd06592 GH31_glucosidase_KIAA1 26.7 2.9E+02 0.0063 21.0 6.2 59 47-108 25-93 (303)
318 PF11303 DUF3105: Protein of u 26.7 2E+02 0.0043 19.1 5.8 26 37-63 52-77 (130)
319 TIGR03831 YgiT_finger YgiT-typ 26.6 48 0.001 16.9 1.4 21 30-50 20-41 (46)
320 PRK10200 putative racemase; Pr 26.5 1.3E+02 0.0029 21.9 4.2 44 49-102 59-102 (230)
321 cd05803 PGM_like4 This PGM-lik 26.3 2.4E+02 0.0051 22.8 5.9 12 136-147 246-257 (445)
322 TIGR01753 flav_short flavodoxi 26.3 1.8E+02 0.004 18.6 4.9 9 84-92 99-107 (140)
323 PF03960 ArsC: ArsC family; I 26.2 1.1E+02 0.0025 19.2 3.4 51 40-102 2-52 (110)
324 cd00570 GST_N_family Glutathio 25.9 71 0.0015 17.1 2.2 29 39-72 4-32 (71)
325 PF00989 PAS: PAS fold; Inter 25.9 65 0.0014 19.4 2.2 14 136-149 13-26 (113)
326 PF14062 DUF4253: Domain of un 25.4 1.7E+02 0.0036 18.8 4.0 49 44-95 26-77 (111)
327 KOG3859 Septins (P-loop GTPase 25.2 38 0.00083 26.1 1.1 47 28-74 171-218 (406)
328 COG0694 Thioredoxin-like prote 24.8 1.8E+02 0.004 18.1 5.9 52 20-71 28-84 (93)
329 COG2761 FrnE Predicted dithiol 24.6 2.9E+02 0.0063 20.4 6.3 38 33-70 4-43 (225)
330 PRK08671 methionine aminopepti 24.4 1.2E+02 0.0027 22.9 3.7 68 52-148 219-289 (291)
331 COG1335 PncA Amidases related 24.0 1.9E+02 0.0041 20.3 4.5 40 34-73 8-57 (205)
332 PF13894 zf-C2H2_4: C2H2-type 23.8 15 0.00033 15.5 -0.8 15 44-58 3-17 (24)
333 PF05228 CHASE4: CHASE4 domain 23.6 1.1E+02 0.0023 20.4 3.0 14 136-149 52-65 (161)
334 PRK11866 2-oxoacid ferredoxin 23.6 93 0.002 23.7 2.9 21 41-61 7-29 (279)
335 PF05209 MinC_N: Septum format 23.5 50 0.0011 20.6 1.2 37 30-72 43-79 (99)
336 cd03087 PGM_like1 This archaea 23.3 3.7E+02 0.008 21.6 6.5 11 136-146 238-248 (439)
337 TIGR02000 NifU_proper Fe-S clu 23.0 3.3E+02 0.0071 20.9 5.7 39 20-58 237-277 (290)
338 PRK09267 flavodoxin FldA; Vali 23.0 2.2E+02 0.0048 19.3 4.6 9 36-44 50-58 (169)
339 PHA02762 hypothetical protein; 23.0 1.5E+02 0.0031 16.5 2.8 20 136-155 30-49 (62)
340 PF05872 DUF853: Bacterial pro 23.0 2.2E+02 0.0047 23.7 4.9 43 32-74 253-299 (502)
341 cd03037 GST_N_GRX2 GST_N famil 22.9 69 0.0015 18.0 1.7 16 39-54 4-19 (71)
342 TIGR01689 EcbF-BcbF capsule bi 22.9 2.3E+02 0.0051 18.6 4.8 48 54-102 29-83 (126)
343 KOG1615 Phosphoserine phosphat 22.7 1.1E+02 0.0024 22.2 2.9 40 51-99 90-129 (227)
344 cd03074 PDI_b'_Calsequestrin_C 22.6 2.3E+02 0.005 18.4 5.7 56 34-97 22-78 (120)
345 KOG2603 Oligosaccharyltransfer 22.5 2.1E+02 0.0045 22.4 4.5 36 28-63 56-95 (331)
346 PF12396 DUF3659: Protein of u 22.4 1E+02 0.0022 17.8 2.3 15 138-152 44-58 (64)
347 PF13344 Hydrolase_6: Haloacid 22.4 2.1E+02 0.0045 17.8 4.0 42 51-98 16-57 (101)
348 cd08362 BphC5-RrK37_N_like N-t 22.0 1.2E+02 0.0027 18.6 3.0 18 136-153 101-118 (120)
349 COG0552 FtsY Signal recognitio 21.8 2.1E+02 0.0045 22.5 4.5 98 31-147 136-234 (340)
350 PRK08244 hypothetical protein; 21.7 92 0.002 25.4 2.8 36 6-41 391-428 (493)
351 cd03059 GST_N_SspA GST_N famil 21.7 78 0.0017 17.7 1.8 17 38-54 3-19 (73)
352 PF03227 GILT: Gamma interfero 21.6 1.4E+02 0.003 18.9 3.1 29 36-64 3-34 (108)
353 PF12017 Tnp_P_element: Transp 21.3 3.3E+02 0.0071 20.2 5.3 23 52-74 196-218 (236)
354 PF13986 DUF4224: Domain of un 20.7 99 0.0021 16.5 1.9 15 129-148 27-41 (47)
355 PF11238 DUF3039: Protein of u 20.6 42 0.0009 19.0 0.4 12 43-54 46-57 (58)
356 COG4285 Uncharacterized conser 20.3 2.4E+02 0.0052 20.9 4.2 62 13-74 29-91 (253)
357 PRK04596 minC septum formation 20.2 3.1E+02 0.0068 20.5 5.0 41 30-73 48-88 (248)
358 COG0560 SerB Phosphoserine pho 20.2 3.4E+02 0.0074 19.5 5.9 46 48-102 76-121 (212)
No 1
>PTZ00056 glutathione peroxidase; Provisional
Probab=100.00 E-value=3.5e-33 Score=199.33 Aligned_cols=157 Identities=40% Similarity=0.620 Sum_probs=132.8
Q ss_pred cccCCCcccceEEecCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCH
Q 031257 5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN 84 (163)
Q Consensus 5 ~~~~~~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~ 84 (163)
.-..+..+|+|++++.+|+.+++++++||++||+||++||++|+.++|.|++++++++++|+.|++|+++++...+.++.
T Consensus 12 ~~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 12 KDELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred chhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999987766666788
Q ss_pred HHHHHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccC-----CccccCeeEEEECCCCcEEEEeCCCCCcchh
Q 031257 85 DQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFG-----DDIQWNFAKFLVDKNGQVVDRYYPTTSLLSL 159 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~ 159 (163)
+++++|++ +++++||++.+.+.++....+++.++.......+. ..+++.|++||||++|+|++++.|..+++++
T Consensus 92 e~~~~f~~-~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l 170 (199)
T PTZ00056 92 KDIRKFND-KNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLEL 170 (199)
T ss_pred HHHHHHHH-HcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHH
Confidence 99999997 89999999966667777777777776543322211 3567777899999999999999998887776
Q ss_pred hhc
Q 031257 160 EVI 162 (163)
Q Consensus 160 ~~~ 162 (163)
.+.
T Consensus 171 ~~~ 173 (199)
T PTZ00056 171 EKK 173 (199)
T ss_pred HHH
Confidence 654
No 2
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=100.00 E-value=2.5e-33 Score=203.43 Aligned_cols=157 Identities=64% Similarity=1.095 Sum_probs=132.9
Q ss_pred cCCCcccceEEecCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHH
Q 031257 7 QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQ 86 (163)
Q Consensus 7 ~~~~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~ 86 (163)
..|.++|+|++.+.+|+.+++++++||++||+||++||++|..++|.|++++++++++|+.|++|++|++...+.++.++
T Consensus 74 ~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~e 153 (236)
T PLN02399 74 ATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE 153 (236)
T ss_pred hcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999998766555677889
Q ss_pred HHHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhcC
Q 031257 87 IADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVIL 163 (163)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (163)
+++|+.+++++.||++.+.|.++....+.|.++....+|..+..+++.|++||||++|+|++++.|..+++++++.|
T Consensus 154 i~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I 230 (236)
T PLN02399 154 IKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDI 230 (236)
T ss_pred HHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHH
Confidence 99998557899999985556667666677877655444432334666779999999999999999999888776643
No 3
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=100.00 E-value=1.8e-32 Score=188.44 Aligned_cols=152 Identities=60% Similarity=1.026 Sum_probs=122.5
Q ss_pred cccceEEecCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHH
Q 031257 11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADF 90 (163)
Q Consensus 11 ~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~ 90 (163)
.+|+|++.+.+|+.+++++++||++||+||++||+ |+.++|.|++++++++++++.+++|++|.+...+.++.+.+++|
T Consensus 1 ~~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f 79 (152)
T cd00340 1 SIYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred CcceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHH
Confidence 47999999999999999999999999999999999 99999999999999998899999999875544444677889999
Q ss_pred HHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhcC
Q 031257 91 VCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVIL 163 (163)
Q Consensus 91 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (163)
++++++++||++.+.|.++......|.++....++..+..+.+.+++||||++|+|++++.|..+++++++.|
T Consensus 80 ~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~i 152 (152)
T cd00340 80 CETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKDI 152 (152)
T ss_pred HHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhcC
Confidence 9744799999994444455544455665544444321123444558999999999999999999988887754
No 4
>PLN02412 probable glutathione peroxidase
Probab=100.00 E-value=1.4e-32 Score=191.53 Aligned_cols=155 Identities=66% Similarity=1.135 Sum_probs=130.2
Q ss_pred CCCcccceEEecCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHH
Q 031257 8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQI 87 (163)
Q Consensus 8 ~~~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~ 87 (163)
....+|+|++.+.+|+.+++++++||++||+||++||+.|+.+++.|++++++|+++|+.|++|++|++...+.++.+++
T Consensus 5 ~~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 5 SPKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999986554445677787
Q ss_pred HHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 88 ADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
++++.++++++||++.+.|.++......|.++.....+.++..+++.|++||||++|+|++++.|..+++++++.
T Consensus 85 ~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~ 159 (167)
T PLN02412 85 QQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKD 159 (167)
T ss_pred HHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHH
Confidence 777655899999999655777666666788776544444334566677999999999999999999988877654
No 5
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=100.00 E-value=6.7e-32 Score=189.60 Aligned_cols=152 Identities=43% Similarity=0.787 Sum_probs=136.6
Q ss_pred CcccceEEecCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHH
Q 031257 10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIAD 89 (163)
Q Consensus 10 ~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~ 89 (163)
.++++|++.+++|+.++|++++||++||.||||||+.|. +++.|++++++|+++|+.|++|+++++..++.++.+++++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHH
Confidence 468999999999999999999999999999999999995 7999999999999999999999999998888899999999
Q ss_pred HHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCc--------------------ccCCccccCeeEEEECCCCcEEEE
Q 031257 90 FVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWG--------------------IFGDDIQWNFAKFLVDKNGQVVDR 149 (163)
Q Consensus 90 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--------------------~~~~~ip~~~~~~lid~~G~i~~~ 149 (163)
|++++++++||++.+.|.+|....++|.+++...+. ..+..|.|+++.||||++|+++.+
T Consensus 82 f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r 161 (183)
T PRK10606 82 YCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR 161 (183)
T ss_pred HHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE
Confidence 997579999999999999999999999999876652 112468999999999999999999
Q ss_pred eCCCCCcch--hhhc
Q 031257 150 YYPTTSLLS--LEVI 162 (163)
Q Consensus 150 ~~g~~~~~~--~~~~ 162 (163)
+.+...+.+ +.+.
T Consensus 162 ~~~~~~p~~~~i~~~ 176 (183)
T PRK10606 162 FSPDMTPEDPIVMES 176 (183)
T ss_pred ECCCCCCCHHHHHHH
Confidence 999998865 5543
No 6
>PTZ00256 glutathione peroxidase; Provisional
Probab=100.00 E-value=1.6e-31 Score=188.85 Aligned_cols=154 Identities=44% Similarity=0.813 Sum_probs=127.7
Q ss_pred cCCCcccceEEecCCCCeeeccccCCcEE-EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHH
Q 031257 7 QNPESIFDLSVKDARGHEVDLSTYKGKVL-LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND 85 (163)
Q Consensus 7 ~~~~~~p~f~l~~~~G~~~~l~~~~gk~v-lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~ 85 (163)
..+.++|+|++++.+|+.+++++++||++ |+.+|++|||+|+.++|.|++++++|+++|+.|++|++|++..++..+.+
T Consensus 15 ~~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 15 PPTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred CCCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHH
Confidence 45778999999999999999999999954 56679999999999999999999999999999999998865555556678
Q ss_pred HHHHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCC-------cccCCccccCeeEEEECCCCcEEEEeCCCCCcch
Q 031257 86 QIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKW-------GIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLS 158 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~ 158 (163)
++.+|+.++++++||++.+.|.++......|.++..... ++ ..+|++.++||||++|+|++++.|..+++.
T Consensus 95 ~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~--~~iP~~~~tflID~~G~Iv~~~~g~~~~~~ 172 (183)
T PTZ00256 95 EIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEA--RQIPWNFAKFLIDGQGKVVKYFSPKVNPNE 172 (183)
T ss_pred HHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccC--cccCcceEEEEECCCCCEEEEECCCCCHHH
Confidence 899998667899999996666777766677877665442 22 467876678999999999999999888776
Q ss_pred hhhc
Q 031257 159 LEVI 162 (163)
Q Consensus 159 ~~~~ 162 (163)
+.+.
T Consensus 173 l~~~ 176 (183)
T PTZ00256 173 MIQD 176 (183)
T ss_pred HHHH
Confidence 5543
No 7
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.97 E-value=1.5e-30 Score=179.03 Aligned_cols=146 Identities=41% Similarity=0.774 Sum_probs=119.9
Q ss_pred ccceEEecCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 031257 12 IFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV 91 (163)
Q Consensus 12 ~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~ 91 (163)
+.+|++.+.+|+.+++++++||++||+||++|||+|+.++|.|++++++|+++|+.+++|++++++..+.++.+.+++|+
T Consensus 2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999998776666667889999999
Q ss_pred HhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccc-cCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 92 CTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQ-WNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 92 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip-~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
+++++++||++.+.+.++......+.+..... ..+| +..++||||++|+|++++.|..+++++.+.
T Consensus 82 ~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~ 148 (153)
T TIGR02540 82 RRNYGVTFPMFSKIKILGSEAEPAFRFLVDSS-----KKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPE 148 (153)
T ss_pred HHhcCCCCCccceEecCCCCCCcHHHHHHhcC-----CCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHH
Confidence 74489999999544445545555566654321 2345 122399999999999999999988877654
No 8
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-29 Score=167.12 Aligned_cols=152 Identities=58% Similarity=1.003 Sum_probs=143.5
Q ss_pred CcccceEEecCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHH
Q 031257 10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIAD 89 (163)
Q Consensus 10 ~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~ 89 (163)
.++.+|++++.+|++++|++++||++||.-.||.|..-. +...|+.|+++|+++|+.|+++.++++..+++.+.+++++
T Consensus 3 ~~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 3 MSIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred cccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHH
Confidence 467899999999999999999999999999999999987 9999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCc-ccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 90 FVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWG-IFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 90 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
|++..+++.||++...+.+|...+++|+++....+| ..+..|.|+++-||||++|+|+.|+.+.+.|+++...
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~ 155 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELA 155 (162)
T ss_pred HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHH
Confidence 999999999999999999999999999999998876 3448899999999999999999999999999887653
No 9
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.96 E-value=1.6e-28 Score=167.60 Aligned_cols=140 Identities=29% Similarity=0.462 Sum_probs=107.4
Q ss_pred cCCCcccceEEec--CCCCeeeccccCCcEEEEEeccC-CCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCC
Q 031257 7 QNPESIFDLSVKD--ARGHEVDLSTYKGKVLLIVNVAS-KCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS 83 (163)
Q Consensus 7 ~~~~~~p~f~l~~--~~G~~~~l~~~~gk~vlv~f~~s-~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~ 83 (163)
++|+.+|+|++++ .+|+++++++++||++||+||++ |||+|..++|.|++++++++++++.+++|+.+ +
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~--------~ 72 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSD--------D 72 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEES--------S
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEeccc--------C
Confidence 4799999999966 99999999999999999999999 99999999999999999999999999999986 3
Q ss_pred HHHHHHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCC--cchhhh
Q 031257 84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTS--LLSLEV 161 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~--~~~~~~ 161 (163)
...+.+++. +++.+|+++ .|.++..... |........+. +..+| +++|||++|+|++++.|..+ ..++++
T Consensus 73 ~~~~~~~~~-~~~~~~~~~--~D~~~~~~~~-~~~~~~~~~~~-~~~~P---~~~lId~~G~V~~~~~g~~~~~~~~~~~ 144 (146)
T PF08534_consen 73 DPPVREFLK-KYGINFPVL--SDPDGALAKA-LGVTIMEDPGN-GFGIP---TTFLIDKDGKVVYRHVGPDPDEESDLEA 144 (146)
T ss_dssp SHHHHHHHH-HTTTTSEEE--EETTSHHHHH-TTCEEECCTTT-TSSSS---EEEEEETTSBEEEEEESSBTTSHHSHHH
T ss_pred CHHHHHHHH-hhCCCceEE--echHHHHHHH-hCCcccccccc-CCeec---EEEEEECCCEEEEEEeCCCCCCCCChhh
Confidence 334888887 799999999 7755544331 11100000000 01566 99999999999999988877 334444
Q ss_pred c
Q 031257 162 I 162 (163)
Q Consensus 162 ~ 162 (163)
+
T Consensus 145 ~ 145 (146)
T PF08534_consen 145 V 145 (146)
T ss_dssp H
T ss_pred c
Confidence 3
No 10
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.5e-27 Score=157.04 Aligned_cols=154 Identities=65% Similarity=1.107 Sum_probs=146.7
Q ss_pred CCCcccceEEecCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHH
Q 031257 8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQI 87 (163)
Q Consensus 8 ~~~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~ 87 (163)
...++.+|+..+++|+.++|+.|+||++||.=.||.|..-..+..+|+.++++|+++|+.|+++.+++++.+++.+.+++
T Consensus 10 ~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei 89 (171)
T KOG1651|consen 10 EKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEI 89 (171)
T ss_pred hhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhh
Q 031257 88 ADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161 (163)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (163)
..++..+++..||++...|.+|..++++|.+++...+|..+..|.|+++-||||++|+++.|+.+.+++..+..
T Consensus 90 ~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~ 163 (171)
T KOG1651|consen 90 LNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEK 163 (171)
T ss_pred HHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccch
Confidence 99998899999999999999999999999999999998888899999999999999999999999888766654
No 11
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.95 E-value=5.5e-27 Score=155.60 Aligned_cols=123 Identities=26% Similarity=0.509 Sum_probs=102.4
Q ss_pred CCCcccceEEecCCCCeeeccccCCcEEEEEeccC-CCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHH
Q 031257 8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVAS-KCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQ 86 (163)
Q Consensus 8 ~~~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s-~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~ 86 (163)
+|+++|+|++++.+|+.+++++++||++||.||++ ||+.|..+++.|++++++++++++.+++|+.| +.++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d--------~~~~ 72 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD--------DPEE 72 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------SHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc--------cccc
Confidence 58999999999999999999999999999999998 99999999999999999999999999999985 6778
Q ss_pred HHHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEE
Q 031257 87 IADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR 149 (163)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~ 149 (163)
++++.+ .++.+||++ +|.++.... .|+..... . ...+| ++||||++|+|+|+
T Consensus 73 ~~~~~~-~~~~~~~~~--~D~~~~~~~-~~~~~~~~--~--~~~~p---~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 73 IKQFLE-EYGLPFPVL--SDPDGELAK-AFGIEDEK--D--TLALP---AVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHH-HHTCSSEEE--EETTSHHHH-HTTCEETT--T--SEESE---EEEEEETTSBEEEE
T ss_pred hhhhhh-hhccccccc--cCcchHHHH-HcCCcccc--C--CceEe---EEEEECCCCEEEeC
Confidence 999987 789999999 776654433 11111000 0 02455 99999999999985
No 12
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-26 Score=157.03 Aligned_cols=141 Identities=17% Similarity=0.273 Sum_probs=115.3
Q ss_pred cccCCCcccceEEecCCCCeeeccccCCcEEEEEec-cCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCC
Q 031257 5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS 83 (163)
Q Consensus 5 ~~~~~~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~-~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~ 83 (163)
.+..|+++|+|+|.+.+|+.++|++++||+|||+|| ..++|.|..|...|++.+.+|++.|..|+|||.| +
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D--------s 74 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD--------S 74 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC--------C
Confidence 478899999999999999999999999999999999 5899999999999999999999999999999974 8
Q ss_pred HHHHHHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCC--CcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhh
Q 031257 84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGK--WGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLE 160 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~ 160 (163)
.+..++|+. +++++|+.+ +|.+..... .|+...... ++.+....+ ++||||++|+|++.+.......+..
T Consensus 75 ~~~~~~F~~-k~~L~f~LL--SD~~~~v~~-~ygv~~~k~~~gk~~~~~~R---~TfvId~dG~I~~~~~~v~~~~h~~ 146 (157)
T COG1225 75 PKSHKKFAE-KHGLTFPLL--SDEDGEVAE-AYGVWGEKKMYGKEYMGIER---STFVIDPDGKIRYVWRKVKVKGHAD 146 (157)
T ss_pred HHHHHHHHH-HhCCCceee--ECCcHHHHH-HhCcccccccCccccccccc---eEEEECCCCeEEEEecCCCCcccHH
Confidence 899999987 999999999 787776543 444433211 222224566 8999999999999985444443333
No 13
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.94 E-value=1e-26 Score=157.48 Aligned_cols=138 Identities=21% Similarity=0.341 Sum_probs=110.7
Q ss_pred CcccceEEecCCCCeeeccccCCcEEEEEec-cCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHH
Q 031257 10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIA 88 (163)
Q Consensus 10 ~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~-~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~ 88 (163)
+++|+|++++.+|+.+++++++||++||+|| ++|||.|..+++.|++++++++++++.+++|+.| +.+.++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~~~~~~ 72 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD--------SVESHA 72 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHHHHH
Confidence 3689999999999999999999999999999 5899999999999999999999889999999974 678899
Q ss_pred HHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhcC
Q 031257 89 DFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVIL 163 (163)
Q Consensus 89 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (163)
+|++ +++.+||++ .|.++.... .|+.......+. .... |++||||++|+|++.+.|....+.+.++|
T Consensus 73 ~~~~-~~~~~~~~l--~D~~~~~~~-~~gv~~~~~~~~-~~~~---p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 73 KFAE-KYGLPFPLL--SDPDGKLAK-AYGVWGEKKKKY-MGIE---RSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred HHHH-HhCCCceEE--ECCccHHHH-HhCCcccccccc-CCcc---eeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 9997 789999999 676654332 222111100000 0112 49999999999999999999888887764
No 14
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.94 E-value=3.1e-26 Score=157.71 Aligned_cols=142 Identities=16% Similarity=0.273 Sum_probs=110.5
Q ss_pred cccCCCcccceEEecCCCCeeeccccCCcEEEEEeccC-CCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCC
Q 031257 5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVAS-KCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS 83 (163)
Q Consensus 5 ~~~~~~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s-~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~ 83 (163)
.+..|.++|+|++++.+|+.+++++++||++||+||++ ||+.|+.+++.|++++++++++++.+++|+.| +
T Consensus 3 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d--------~ 74 (154)
T PRK09437 3 PLKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD--------K 74 (154)
T ss_pred cCCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------C
Confidence 46789999999999999999999999999999999986 68899999999999999999999999999974 6
Q ss_pred HHHHHHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCC-Ccc-cCCccccCeeEEEECCCCcEEEEeCCCCCcchhhh
Q 031257 84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGK-WGI-FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~-~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (163)
.+++++|++ +++.+||++ .|.++.... .|+...... .+. +....| ++||||++|+|++.+.|....+.+.+
T Consensus 75 ~~~~~~~~~-~~~~~~~~l--~D~~~~~~~-~~gv~~~~~~~~~~~~~~~~---~~~lid~~G~i~~~~~g~~~~~~~~~ 147 (154)
T PRK09437 75 PEKLSRFAE-KELLNFTLL--SDEDHQVAE-QFGVWGEKKFMGKTYDGIHR---ISFLIDADGKIEHVFDKFKTSNHHDV 147 (154)
T ss_pred HHHHHHHHH-HhCCCCeEE--ECCCchHHH-HhCCCcccccccccccCcce---EEEEECCCCEEEEEEcCCCcchhHHH
Confidence 789999997 789999999 676544332 222110000 000 000113 78999999999999988766555443
No 15
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.94 E-value=2.2e-26 Score=162.90 Aligned_cols=130 Identities=16% Similarity=0.204 Sum_probs=103.8
Q ss_pred ccCCCcccceEEecCC--CCeeecccc-CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCC
Q 031257 6 IQNPESIFDLSVKDAR--GHEVDLSTY-KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (163)
Q Consensus 6 ~~~~~~~p~f~l~~~~--G~~~~l~~~-~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~ 82 (163)
...|.++|+|++.+.+ |+.++++++ +||++||+||++||++|+.++|.|+++.+ +++.|++|+.+ +
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~-------~ 107 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYK-------D 107 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECC-------C
Confidence 3468899999999998 477777765 79999999999999999999999988854 46999999975 4
Q ss_pred CHHHHHHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
+.++.++|++ +++.+||.+. .|.++.... . .|+ .++| ++||||++|+|++++.|..+.+++++.
T Consensus 108 ~~~~~~~~~~-~~~~~~~~~~-~D~~~~~~~-~--------~gv--~~~P---~t~vid~~G~i~~~~~G~~~~~~l~~~ 171 (185)
T PRK15412 108 DRQKAISWLK-ELGNPYALSL-FDGDGMLGL-D--------LGV--YGAP---ETFLIDGNGIIRYRHAGDLNPRVWESE 171 (185)
T ss_pred CHHHHHHHHH-HcCCCCceEE-EcCCccHHH-h--------cCC--CcCC---eEEEECCCceEEEEEecCCCHHHHHHH
Confidence 6778889987 7899999631 565544322 1 133 5566 999999999999999999988877654
No 16
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.94 E-value=1.4e-25 Score=157.06 Aligned_cols=135 Identities=26% Similarity=0.459 Sum_probs=115.5
Q ss_pred ccccCCCcccceEEecCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCC
Q 031257 4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS 83 (163)
Q Consensus 4 ~~~~~~~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~ 83 (163)
..+..|..+|+|++.+.+|+.+++++++||+++|.||++||++|+.+++.|+++++++++.++.+++|++| ++
T Consensus 33 ~~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d-------~~ 105 (173)
T PRK03147 33 EKVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVD-------ET 105 (173)
T ss_pred cccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcC-------CC
Confidence 45678999999999999999999999999999999999999999999999999999999888999999987 56
Q ss_pred HHHHHHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
.+.+.+|.+ +++.+|+++ .|.++..... | |+ .++| ++|+||++|+|+..+.|..+.+++.+.
T Consensus 106 ~~~~~~~~~-~~~~~~~~~--~d~~~~~~~~-~--------~v--~~~P---~~~lid~~g~i~~~~~g~~~~~~l~~~ 167 (173)
T PRK03147 106 ELAVKNFVN-RYGLTFPVA--IDKGRQVIDA-Y--------GV--GPLP---TTFLIDKDGKVVKVITGEMTEEQLEEY 167 (173)
T ss_pred HHHHHHHHH-HhCCCceEE--ECCcchHHHH-c--------CC--CCcC---eEEEECCCCcEEEEEeCCCCHHHHHHH
Confidence 788999997 899999998 6655433321 1 23 4455 999999999999999998888777654
No 17
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.93 E-value=2.2e-25 Score=152.48 Aligned_cols=130 Identities=20% Similarity=0.342 Sum_probs=104.8
Q ss_pred ccCCCcccceEEecCCCCeeeccccCC-cEEEEEec-cCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCC
Q 031257 6 IQNPESIFDLSVKDARGHEVDLSTYKG-KVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS 83 (163)
Q Consensus 6 ~~~~~~~p~f~l~~~~G~~~~l~~~~g-k~vlv~f~-~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~ 83 (163)
+..|..+|+|.+.+.+|+.+++++++| |++||.|| ++||+.|..+++.|+++++++++.++.+++|+.| +
T Consensus 1 ~~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d--------~ 72 (149)
T cd03018 1 LEVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD--------S 72 (149)
T ss_pred CCCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC--------C
Confidence 467999999999999999999999999 99888887 8999999999999999999999889999999974 6
Q ss_pred HHHHHHHHHhhcCCccceeeeeecC--CCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCC
Q 031257 84 NDQIADFVCTRFKSEFPIFEKIDVN--GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT 154 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~ 154 (163)
.+.+++|++ +++.+||++ .|.+ +.... .|+.... . .++| .|++||||++|+|++++.|..
T Consensus 73 ~~~~~~~~~-~~~~~~~~~--~D~~~~~~~~~-~~g~~~~--~----~~~~-~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 73 PFSLRAWAE-ENGLTFPLL--SDFWPHGEVAK-AYGVFDE--D----LGVA-ERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred HHHHHHHHH-hcCCCceEe--cCCCchhHHHH-HhCCccc--c----CCCc-cceEEEECCCCEEEEEEecCC
Confidence 778899987 789999998 6654 33222 1211100 0 0222 348999999999999988866
No 18
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.93 E-value=2.7e-25 Score=154.96 Aligned_cols=131 Identities=16% Similarity=0.127 Sum_probs=100.9
Q ss_pred cccCCCcccceEEecCCCCeeeccccCCcEEEEEeccCC-CCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCC
Q 031257 5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASK-CGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS 83 (163)
Q Consensus 5 ~~~~~~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~-C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~ 83 (163)
.+..|+++|+|++.+.+|+.+++++++||++||+||++| ||+|..+++.|+++++++. ++.+++||.| +
T Consensus 17 ~~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D--------~ 86 (167)
T PRK00522 17 LPQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD--------L 86 (167)
T ss_pred CCCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC--------C
Confidence 356899999999999999999999999999999999999 9999999999999999983 6999999975 5
Q ss_pred HHHHHHHHHhhcCCc-cceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCC
Q 031257 84 NDQIADFVCTRFKSE-FPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP 152 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g 152 (163)
....++|+. ++++. ++++ +|..+......|+....... ..+...| ++||||++|+|++.+.+
T Consensus 87 ~~~~~~f~~-~~~~~~~~~l--sD~~~~~~~~~~gv~~~~~~-~~g~~~r---~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 87 PFAQKRFCG-AEGLENVITL--SDFRDHSFGKAYGVAIAEGP-LKGLLAR---AVFVLDENNKVVYSELV 149 (167)
T ss_pred HHHHHHHHH-hCCCCCceEe--ecCCccHHHHHhCCeecccc-cCCceee---EEEEECCCCeEEEEEEC
Confidence 677888887 78886 7888 66443222223332111100 0002234 89999999999999854
No 19
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.93 E-value=2.9e-25 Score=151.01 Aligned_cols=126 Identities=16% Similarity=0.142 Sum_probs=99.6
Q ss_pred CCCcccceEEecCCCCeeeccccCCcEEEEEeccCC-CCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHH
Q 031257 8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASK-CGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQ 86 (163)
Q Consensus 8 ~~~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~-C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~ 86 (163)
.|.++|+|++.+.+|+.+++++++||++||+||++| |++|+.+++.|++++++++ ++.+++||+| +.+.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d--------~~~~ 71 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISAD--------LPFA 71 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECC--------CHHH
Confidence 689999999999999999999999999999999988 6999999999999999984 6999999975 5677
Q ss_pred HHHHHHhhcCC-ccceeeeeecC-CCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCC
Q 031257 87 IADFVCTRFKS-EFPIFEKIDVN-GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT 154 (163)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~ 154 (163)
.++|.. +++. +|+++ .|.. +.... .|.......+ ...| ++||||++|+|++.+.|..
T Consensus 72 ~~~~~~-~~~~~~~~~l--~D~~~~~~~~-~~gv~~~~~~----~~~~---~~~iid~~G~I~~~~~~~~ 130 (143)
T cd03014 72 QKRWCG-AEGVDNVTTL--SDFRDHSFGK-AYGVLIKDLG----LLAR---AVFVIDENGKVIYVELVPE 130 (143)
T ss_pred HHHHHH-hcCCCCceEe--ecCcccHHHH-HhCCeeccCC----ccce---EEEEEcCCCeEEEEEECCC
Confidence 788876 6775 79988 6654 33322 2222111110 2245 9999999999999987653
No 20
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.93 E-value=3.6e-25 Score=147.68 Aligned_cols=123 Identities=16% Similarity=0.211 Sum_probs=100.7
Q ss_pred cccceEEecCCC--CeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHH
Q 031257 11 SIFDLSVKDARG--HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIA 88 (163)
Q Consensus 11 ~~p~f~l~~~~G--~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~ 88 (163)
++|+|++.+.+| +.+++++++||++||.||++||+.|+.+++.|+++.+++ ++.+++|+.+ ++.+.++
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~-------~~~~~~~ 71 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYK-------DNPENAL 71 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECC-------CCHHHHH
Confidence 689999999998 889999999999999999999999999999999998775 4999999975 5788899
Q ss_pred HHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchh
Q 031257 89 DFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSL 159 (163)
Q Consensus 89 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~ 159 (163)
+|++ +++..|+.+. .|..+..... | ++ .++| ++|+||++|+|++++.|..+.+.+
T Consensus 72 ~~~~-~~~~~~~~~~-~D~~~~~~~~-~--------~v--~~~P---~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 72 AWLA-RHGNPYAAVG-FDPDGRVGID-L--------GV--YGVP---ETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HHHH-hcCCCCceEE-ECCcchHHHh-c--------CC--CCCC---eEEEECCCceEEEEEeccCChHhc
Confidence 9987 7888886431 4544432221 1 33 4566 999999999999999998887654
No 21
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.93 E-value=5.4e-25 Score=154.02 Aligned_cols=125 Identities=22% Similarity=0.360 Sum_probs=104.5
Q ss_pred CCcccceEEecCCCCeeecccc-CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHH
Q 031257 9 PESIFDLSVKDARGHEVDLSTY-KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQI 87 (163)
Q Consensus 9 ~~~~p~f~l~~~~G~~~~l~~~-~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~ 87 (163)
|..+|+|.+.+.+|+.++++++ +|+++||+||++|||.|..+++.|++++++++++++.+++|++|.......++.+.+
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~ 80 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENM 80 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHH
Confidence 5789999999999999999998 899999999999999999999999999999998889999999974333334678999
Q ss_pred HHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEe
Q 031257 88 ADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRY 150 (163)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~ 150 (163)
++|+. +++.+|+++ .|.++.... .+ |+ ..+| ++||||++|+|+++.
T Consensus 81 ~~~~~-~~~~~~~~l--~D~~~~~~~----~~-----~v--~~~P---~~~lid~~G~v~~~~ 126 (171)
T cd02969 81 KAKAK-EHGYPFPYL--LDETQEVAK----AY-----GA--ACTP---DFFLFDPDGKLVYRG 126 (171)
T ss_pred HHHHH-HCCCCceEE--ECCchHHHH----Hc-----CC--CcCC---cEEEECCCCeEEEee
Confidence 99997 889999999 666543222 11 22 3445 999999999999874
No 22
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.93 E-value=5.7e-25 Score=154.18 Aligned_cols=129 Identities=19% Similarity=0.269 Sum_probs=101.0
Q ss_pred CCCcccceEEecCCC----CeeeccccCCcEEEEEec-cCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCC
Q 031257 8 NPESIFDLSVKDARG----HEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (163)
Q Consensus 8 ~~~~~p~f~l~~~~G----~~~~l~~~~gk~vlv~f~-~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~ 82 (163)
.|+.+|+|++.+.+| +.+++++++||++||+|| ++||+.|..+++.|++++++|.++|+.+++||+|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d-------- 72 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD-------- 72 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC--------
Confidence 488999999999887 799999999999999999 8999999999999999999999889999999985
Q ss_pred CHHHHHHHHHhh------cCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCC
Q 031257 83 SNDQIADFVCTR------FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT 154 (163)
Q Consensus 83 ~~~~~~~~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~ 154 (163)
+.+..++|.... .+.+|+++ .|..+..... |.......+ ..+| ++||||++|+|++++.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~f~~l--~D~~~~~~~~-~gv~~~~~~----~~~p---~~~lID~~G~I~~~~~~~~ 140 (173)
T cd03015 73 SHFSHLAWRNTPRKEGGLGKINFPLL--ADPKKKISRD-YGVLDEEEG----VALR---GTFIIDPEGIIRHITVNDL 140 (173)
T ss_pred CHHHHHHHHHhhhhhCCccCcceeEE--ECCchhHHHH-hCCccccCC----ceee---EEEEECCCCeEEEEEecCC
Confidence 444445555421 45789999 7776655442 222111111 2455 9999999999999986544
No 23
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.93 E-value=6.1e-25 Score=146.51 Aligned_cols=113 Identities=22% Similarity=0.297 Sum_probs=93.4
Q ss_pred CCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccce
Q 031257 22 GHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPI 101 (163)
Q Consensus 22 G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (163)
|+++++++++||++||+||++||++|..+++.|++++++++++++.+++|+.+.... .++.+++++|++ +++++||+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~--~~~~~~~~~~~~-~~~~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAF--ERDLANVKSAVL-RYGITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCcccc--ccCHHHHHHHHH-HcCCCCCE
Confidence 578999999999999999999999999999999999999998899999998753221 256888999997 89999999
Q ss_pred eeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCC
Q 031257 102 FEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT 153 (163)
Q Consensus 102 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~ 153 (163)
+ .|.++.... .+ |+ .++| ++||||++|+|++++.|.
T Consensus 90 ~--~D~~~~~~~----~~-----~v--~~~P---~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 90 A--NDNDYATWR----AY-----GN--QYWP---ALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred E--ECCchHHHH----Hh-----CC--CcCC---eEEEECCCCcEEEEEecC
Confidence 8 666543322 11 22 4556 999999999999998875
No 24
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.92 E-value=5.5e-25 Score=154.24 Aligned_cols=130 Identities=19% Similarity=0.223 Sum_probs=102.2
Q ss_pred ccCCCcccceEEecCCCC--eeecccc-CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCC
Q 031257 6 IQNPESIFDLSVKDARGH--EVDLSTY-KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (163)
Q Consensus 6 ~~~~~~~p~f~l~~~~G~--~~~l~~~-~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~ 82 (163)
...|.++|+|++.+.+|+ .++++++ +||+++|+||++||++|+.++|.++++.+ +++.+++|+.+ +
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~-------~ 102 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DGLPIVGVDYK-------D 102 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cCCEEEEEECC-------C
Confidence 356889999999999997 4555665 78999999999999999999999988864 36999999975 4
Q ss_pred CHHHHHHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
..++..+|+. +++.+|+.+. .|.++..... | ++ .++| ++|+||++|+|++++.|..+.+++.+.
T Consensus 103 ~~~~~~~~~~-~~~~~f~~v~-~D~~~~~~~~-~--------~v--~~~P---~~~~id~~G~i~~~~~G~~~~~~l~~~ 166 (173)
T TIGR00385 103 QSQNALKFLK-ELGNPYQAIL-IDPNGKLGLD-L--------GV--YGAP---ETFLVDGNGVILYRHAGPLNNEVWTEG 166 (173)
T ss_pred ChHHHHHHHH-HcCCCCceEE-ECCCCchHHh-c--------CC--eeCC---eEEEEcCCceEEEEEeccCCHHHHHHH
Confidence 5667778887 7889998431 5666544331 1 33 4566 999999999999999998888776653
No 25
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.92 E-value=7.3e-25 Score=156.98 Aligned_cols=126 Identities=25% Similarity=0.457 Sum_probs=97.4
Q ss_pred ccCCCcccceEEecCCCCeeeccccCCcEEEE-EeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCH
Q 031257 6 IQNPESIFDLSVKDARGHEVDLSTYKGKVLLI-VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN 84 (163)
Q Consensus 6 ~~~~~~~p~f~l~~~~G~~~~l~~~~gk~vlv-~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~ 84 (163)
+..|+.+|+|++.+.+| .+++++++||++|| +||++|||+|..+++.|++++++|+++|+.+++||+| +.
T Consensus 2 ~~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D--------~~ 72 (202)
T PRK13190 2 VKLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD--------SI 72 (202)
T ss_pred CCCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CH
Confidence 46799999999999888 69999999997766 6899999999999999999999999999999999986 44
Q ss_pred HHHHHHHH---hhcC--CccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEe
Q 031257 85 DQIADFVC---TRFK--SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRY 150 (163)
Q Consensus 85 ~~~~~~~~---~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~ 150 (163)
....+|++ ++.+ ++||++ .|.++..+. .|+......+ ..+| ++||||++|+|++..
T Consensus 73 ~~~~~w~~~~~~~~g~~~~fPll--~D~~~~ia~-~ygv~~~~~g----~~~p---~~fiId~~G~I~~~~ 133 (202)
T PRK13190 73 YSHIAWLRDIEERFGIKIPFPVI--ADIDKELAR-EYNLIDENSG----ATVR---GVFIIDPNQIVRWMI 133 (202)
T ss_pred HHHHHHHHhHHHhcCCCceEEEE--ECCChHHHH-HcCCccccCC----cEEe---EEEEECCCCEEEEEE
Confidence 44334432 2444 589999 787765543 2332211111 2466 999999999999875
No 26
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.92 E-value=1.6e-24 Score=153.57 Aligned_cols=129 Identities=17% Similarity=0.161 Sum_probs=99.4
Q ss_pred cCCCcccceEEec-CCCC--eeeccccCCcEEEEEec-cCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCC
Q 031257 7 QNPESIFDLSVKD-ARGH--EVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (163)
Q Consensus 7 ~~~~~~p~f~l~~-~~G~--~~~l~~~~gk~vlv~f~-~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~ 82 (163)
..|+++|+|++.+ .+|+ .+++++++||++||+|| ++||++|..+++.|++++++|.++|+.+++||+|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D-------- 74 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD-------- 74 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC--------
Confidence 5689999999998 5786 68888999999999999 9999999999999999999999889999999985
Q ss_pred CHHHHHHHHHh---hcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCC
Q 031257 83 SNDQIADFVCT---RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT 153 (163)
Q Consensus 83 ~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~ 153 (163)
+....++|... ..+++||++ +|.++.... .|+......+ ...| ++||||++|+|++.+...
T Consensus 75 ~~~~~~~~~~~~~~~~~l~fpll--sD~~~~~a~-~~gv~~~~~g----~~~p---~tfiID~~G~I~~~~~~~ 138 (187)
T TIGR03137 75 THFVHKAWHDTSEAIGKITYPML--GDPTGVLTR-NFGVLIEEAG----LADR---GTFVIDPEGVIQAVEITD 138 (187)
T ss_pred CHHHHHHHHhhhhhccCcceeEE--ECCccHHHH-HhCCcccCCC----ceee---EEEEECCCCEEEEEEEeC
Confidence 45556666542 136789999 776654433 2222111100 2345 999999999999987543
No 27
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.92 E-value=6.7e-24 Score=143.57 Aligned_cols=129 Identities=20% Similarity=0.287 Sum_probs=101.8
Q ss_pred cccceEEecCCCCeeeccccCCcEEEEEec-cCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHH
Q 031257 11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIAD 89 (163)
Q Consensus 11 ~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~-~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~ 89 (163)
.+|+|++.+.+|+++++++++||++||+|| ++||+.|..+++.|+++++++++.++.+++|+.| +.+.+++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--------~~~~~~~ 72 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--------SPFSHKA 72 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHHHHH
Confidence 379999999999999999999999999999 7899999999999999999998788999999974 6778888
Q ss_pred HHHhhc-CCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCC
Q 031257 90 FVCTRF-KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTS 155 (163)
Q Consensus 90 ~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~ 155 (163)
|.+ ++ +.+|+++ .|.++.... .|+....... ......|++||||++|+|++++.|...
T Consensus 73 ~~~-~~~~~~~~~l--~D~~~~~~~-~~g~~~~~~~----~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 73 WAE-KEGGLNFPLL--SDPDGEFAK-AYGVLIEKSA----GGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred HHh-cccCCCceEE--ECCChHHHH-HcCCcccccc----ccCceeEEEEEECCCCcEEEEEecCCC
Confidence 887 67 8999999 676653332 1111100000 001123489999999999999888765
No 28
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.91 E-value=5.6e-24 Score=144.35 Aligned_cols=134 Identities=19% Similarity=0.236 Sum_probs=99.9
Q ss_pred cccceEEecCCCCeeeccccCCcEEEEEeccCCCCC-ChhhHHHHHHHHHHhcCCC---eEEEEEecCCCCCCCCCCHHH
Q 031257 11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGM-TNSNYIELSQLYDKYKDQG---LEILAFPCNQFGEEEPGSNDQ 86 (163)
Q Consensus 11 ~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~-C~~~~~~l~~~~~~~~~~~---~~ii~is~d~~~~~~~~~~~~ 86 (163)
.+|+|++.+.+|+.+++++++||++||.||++||+. |..+++.|+++++++++++ +.+++|+.|. ..++.+.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~----~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP----ERDTPEV 76 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC----CCCCHHH
Confidence 379999999999999999999999999999999997 9999999999999998864 9999999862 2356788
Q ss_pred HHHHHHhhcCCccceeeeeecCCCcchhHHHHhH---hCCC-cccCCccccCeeEEEECCCCcEEEEeCC
Q 031257 87 IADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK---SGKW-GIFGDDIQWNFAKFLVDKNGQVVDRYYP 152 (163)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~-~~~~~~ip~~~~~~lid~~G~i~~~~~g 152 (163)
+++|++ +++.+|+++ .|.... ...+...+. .... +.....+.+.|.+||||++|+|++++.+
T Consensus 77 ~~~~~~-~~~~~~~~l--~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 77 LKAYAK-AFGPGWIGL--TGTPEE-IEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHHHH-HhCCCcEEE--ECCHHH-HHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 999997 788899998 553210 011111111 0000 0000123345689999999999998753
No 29
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.91 E-value=1.2e-23 Score=149.40 Aligned_cols=127 Identities=14% Similarity=0.202 Sum_probs=97.1
Q ss_pred cccCCCcccceEEecCCCCeeecc--ccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCC
Q 031257 5 FIQNPESIFDLSVKDARGHEVDLS--TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (163)
Q Consensus 5 ~~~~~~~~p~f~l~~~~G~~~~l~--~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~ 82 (163)
.+..|.++|+|++++.+|+.++++ .++||+++|+||++|||+|+.++|.++++.+++ ++.+++|+. +
T Consensus 45 ~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~--------~ 113 (189)
T TIGR02661 45 GPDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISD--------G 113 (189)
T ss_pred CCCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeC--------C
Confidence 467899999999999999999995 469999999999999999999999999987653 578888884 4
Q ss_pred CHHHHHHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhh
Q 031257 83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (163)
+.++.++|++ +++.+++.+ . .++.... . .|. ..+| ++|+||++|+|+++.. ....+++++
T Consensus 114 ~~~~~~~~~~-~~~~~~~~~--~-~~~~i~~-~--------y~v--~~~P---~~~lID~~G~I~~~g~-~~~~~~le~ 173 (189)
T TIGR02661 114 TPAEHRRFLK-DHELGGERY--V-VSAEIGM-A--------FQV--GKIP---YGVLLDQDGKIRAKGL-TNTREHLES 173 (189)
T ss_pred CHHHHHHHHH-hcCCCccee--e-chhHHHH-h--------ccC--Cccc---eEEEECCCCeEEEccC-CCCHHHHHH
Confidence 6788899997 788887765 2 2221111 1 133 5566 9999999999998633 223345544
No 30
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.91 E-value=9.8e-24 Score=167.72 Aligned_cols=137 Identities=20% Similarity=0.210 Sum_probs=108.0
Q ss_pred ccCCCcccceEEecCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHH
Q 031257 6 IQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND 85 (163)
Q Consensus 6 ~~~~~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~ 85 (163)
...+.++|+|++.+.+|+.+.++ +||++||+|||+||++|+.++|.|++++++++..++.||+|+++.... ..+.+
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~--e~~~~ 107 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLH--EKKDG 107 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccc--cccHH
Confidence 44567899999999999999988 899999999999999999999999999999987789999998753211 23456
Q ss_pred HHHHHHHhhcCC-ccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhcC
Q 031257 86 QIADFVCTRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVIL 163 (163)
Q Consensus 86 ~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (163)
++++|+. ..+. .+|++ .|.++.... .+ ++ .++| +++|||++|+|+.+..|..+.+++.+.|
T Consensus 108 ~~~~~~~-~~~y~~~pV~--~D~~~~lak----~f-----gV--~giP---Tt~IIDkdGkIV~~~~G~~~~eeL~a~I 169 (521)
T PRK14018 108 DFQKWYA-GLDYPKLPVL--TDNGGTLAQ----SL-----NI--SVYP---SWAIIGKDGDVQRIVKGSISEAQALALI 169 (521)
T ss_pred HHHHHHH-hCCCccccee--ccccHHHHH----Hc-----CC--CCcC---eEEEEcCCCeEEEEEeCCCCHHHHHHHH
Confidence 7777775 4443 56777 665443222 11 33 5666 9999999999999999999988887643
No 31
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.90 E-value=2.5e-23 Score=150.06 Aligned_cols=128 Identities=19% Similarity=0.355 Sum_probs=99.6
Q ss_pred cCCCcccceEEecCCCCeeeccccCCcEE-EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHH
Q 031257 7 QNPESIFDLSVKDARGHEVDLSTYKGKVL-LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND 85 (163)
Q Consensus 7 ~~~~~~p~f~l~~~~G~~~~l~~~~gk~v-lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~ 85 (163)
..|+.+|+|++.+.+|+...+++++||++ |++||++|||+|..+++.|++++.+|.++|+.+++||+| +..
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D--------~~~ 74 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD--------QVF 74 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHH
Confidence 57999999999999999888899999975 678999999999999999999999999999999999986 343
Q ss_pred H---HHHHHHh--hcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeC
Q 031257 86 Q---IADFVCT--RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYY 151 (163)
Q Consensus 86 ~---~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~ 151 (163)
. +.+++++ ..+++||++ .|.++..+. .|+.+.... +. ..+| ++||||++|+|++.+.
T Consensus 75 ~~~~w~~~i~~~~~~~i~fPil--~D~~~~va~-~yg~~~~~~-~~--~~~R---~tfIID~dG~Ir~~~~ 136 (215)
T PRK13599 75 SHIKWVEWIKDNTNIAIPFPVI--ADDLGKVSN-QLGMIHPGK-GT--NTVR---AVFIVDDKGTIRLIMY 136 (215)
T ss_pred HHHHHHHhHHHhcCCCCceeEE--ECCCchHHH-HcCCCccCC-CC--ceee---EEEEECCCCEEEEEEE
Confidence 3 4444442 247899999 777665543 333221111 11 2456 9999999999999854
No 32
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.90 E-value=2.3e-23 Score=142.25 Aligned_cols=127 Identities=19% Similarity=0.240 Sum_probs=95.7
Q ss_pred cccceEEecCCCCeeeccccC-CcE-EEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHH
Q 031257 11 SIFDLSVKDARGHEVDLSTYK-GKV-LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIA 88 (163)
Q Consensus 11 ~~p~f~l~~~~G~~~~l~~~~-gk~-vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~ 88 (163)
.+|+|++.+.+|+.++++++. +++ +|++||++|||+|+.+++.|+++++++.+.++.+++|+.+ +.+...
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~--------~~~~~~ 72 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE--------SPEKLE 72 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC--------CHHHHH
Confidence 479999999999999999975 454 5555579999999999999999999999889999999975 455666
Q ss_pred HHHHhhcCCccceeeeeecCCCcchhHHHHhHhCC-----------------Ccc--cCCccccCeeEEEECCCCcEEEE
Q 031257 89 DFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGK-----------------WGI--FGDDIQWNFAKFLVDKNGQVVDR 149 (163)
Q Consensus 89 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----------------~~~--~~~~ip~~~~~~lid~~G~i~~~ 149 (163)
+|.+ +++.+||++ .|+++.... .|....... ++. ....+| ++||||++|+|++.
T Consensus 73 ~~~~-~~~~~~p~~--~D~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~fvid~~g~i~~~ 145 (149)
T cd02970 73 AFDK-GKFLPFPVY--ADPDRKLYR-ALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLP---GVFVIGPDGTILFA 145 (149)
T ss_pred HHHH-hcCCCCeEE--ECCchhHHH-HcCceecCcHHHHHHHHhhCcccccccCCCCcccccc---eEEEECCCCeEEEE
Confidence 7776 789999999 777654433 222110000 000 002455 99999999999998
Q ss_pred eCC
Q 031257 150 YYP 152 (163)
Q Consensus 150 ~~g 152 (163)
+.+
T Consensus 146 ~~~ 148 (149)
T cd02970 146 HVD 148 (149)
T ss_pred ecC
Confidence 876
No 33
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.90 E-value=7.9e-24 Score=143.43 Aligned_cols=106 Identities=13% Similarity=0.210 Sum_probs=80.3
Q ss_pred CeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCC-------CeEEEEEecCCCCCCCCCCHHHHHHHHHhhc
Q 031257 23 HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-------GLEILAFPCNQFGEEEPGSNDQIADFVCTRF 95 (163)
Q Consensus 23 ~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~-------~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~ 95 (163)
..+++++++||+++|+|||||||+|+.++|.|.+++++++++ ++.+|+||.| .+.+++++|++ ++
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D-------~~~~~~~~f~~-~~ 87 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMD-------QSEQQQESFLK-DM 87 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECC-------CCHHHHHHHHH-HC
Confidence 356788999999999999999999999999999999877643 6999999986 46677889987 78
Q ss_pred CCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEE
Q 031257 96 KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR 149 (163)
Q Consensus 96 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~ 149 (163)
++.|+.+...+..+ ..+.. ..|+ .++| ++||||++|+|+.+
T Consensus 88 ~~~~~~~p~~~~~~---~~l~~-----~y~v--~~iP---t~vlId~~G~Vv~~ 128 (146)
T cd03008 88 PKKWLFLPFEDEFR---RELEA-----QFSV--EELP---TVVVLKPDGDVLAA 128 (146)
T ss_pred CCCceeecccchHH---HHHHH-----HcCC--CCCC---EEEEECCCCcEEee
Confidence 87775541122111 11111 1134 6677 99999999999986
No 34
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.90 E-value=1.7e-23 Score=150.13 Aligned_cols=130 Identities=15% Similarity=0.268 Sum_probs=96.8
Q ss_pred CCCcccceEEecCCCCeeeccccCC-cEE-EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHH
Q 031257 8 NPESIFDLSVKDARGHEVDLSTYKG-KVL-LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND 85 (163)
Q Consensus 8 ~~~~~p~f~l~~~~G~~~~l~~~~g-k~v-lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~ 85 (163)
.|+.+|+|++.+.+|. +++++++| |++ |++||++|||.|..+++.|++++++|+++|+.+++||+| +..
T Consensus 1 vG~~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D--------~~~ 71 (203)
T cd03016 1 LGDTAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD--------SVE 71 (203)
T ss_pred CcCCCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHH
Confidence 4789999999999985 89999988 665 558889999999999999999999999999999999986 455
Q ss_pred HHHHHHHh-----hcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCC
Q 031257 86 QIADFVCT-----RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT 154 (163)
Q Consensus 86 ~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~ 154 (163)
..++|..+ +.+++||++ .|.++.... .|+......+. ...+| ++||||++|+|++.+.+..
T Consensus 72 ~~~~~~~~i~~~~~~~~~fpil--~D~~~~ia~-~yg~~~~~~~~--~~~~r---~~fiID~~G~I~~~~~~~~ 137 (203)
T cd03016 72 SHIKWIEDIEEYTGVEIPFPII--ADPDREVAK-LLGMIDPDAGS--TLTVR---AVFIIDPDKKIRLILYYPA 137 (203)
T ss_pred HHHHHHhhHHHhcCCCCceeEE--ECchHHHHH-HcCCccccCCC--Cceee---EEEEECCCCeEEEEEecCC
Confidence 55545431 168899999 777654433 22221110000 02344 8999999999999876543
No 35
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.90 E-value=7.5e-23 Score=133.92 Aligned_cols=110 Identities=14% Similarity=0.285 Sum_probs=88.5
Q ss_pred cceEEecCCCCeeeccccC-CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 031257 13 FDLSVKDARGHEVDLSTYK-GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV 91 (163)
Q Consensus 13 p~f~l~~~~G~~~~l~~~~-gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~ 91 (163)
|+|++.+.+|+.+++++++ ||++||+||++||++|+.++|.++++.+++.+ ++.+++++ + ++.++.++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~-~-------~~~~~~~~~~ 71 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS-D-------GEKAEHQRFL 71 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe-C-------CCHHHHHHHH
Confidence 7899999999999999997 99999999999999999999999999888765 48888775 3 4678888898
Q ss_pred HhhcCC-ccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEe
Q 031257 92 CTRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRY 150 (163)
Q Consensus 92 ~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~ 150 (163)
+ ++++ .||.+ .+ ... . . ..|+ ..+| ++||||++|+|+++.
T Consensus 72 ~-~~~~~~~p~~--~~--~~~-~---~-----~~~~--~~~P---~~~vid~~G~v~~~~ 112 (114)
T cd02967 72 K-KHGLEAFPYV--LS--AEL-G---M-----AYQV--SKLP---YAVLLDEAGVIAAKG 112 (114)
T ss_pred H-HhCCCCCcEE--ec--HHH-H---h-----hcCC--CCcC---eEEEECCCCeEEecc
Confidence 7 7887 58987 32 111 1 1 1133 4566 999999999999863
No 36
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.90 E-value=1.8e-23 Score=150.78 Aligned_cols=131 Identities=18% Similarity=0.307 Sum_probs=98.0
Q ss_pred ccCCCcccceEEecCCCCeeeccccCCcEEEE-EeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCH
Q 031257 6 IQNPESIFDLSVKDARGHEVDLSTYKGKVLLI-VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN 84 (163)
Q Consensus 6 ~~~~~~~p~f~l~~~~G~~~~l~~~~gk~vlv-~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~ 84 (163)
+..|..+|+|++.+.+|+....++++||++|| +||++||++|..+++.|++++++|+++|+.|++||+| +.
T Consensus 7 ~~iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D--------s~ 78 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD--------SN 78 (215)
T ss_pred ccCCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC--------CH
Confidence 55899999999999999844335589997765 7889999999999999999999999999999999986 34
Q ss_pred HH---HHHHHHh--hcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCC
Q 031257 85 DQ---IADFVCT--RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT 153 (163)
Q Consensus 85 ~~---~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~ 153 (163)
.. +.+++++ ..+++||++ +|.++..+. .|+.+..... +..+| ++||||++|+|++...+.
T Consensus 79 ~~h~aw~~~~~~~~~~~i~fPll--sD~~~~ia~-~ygv~~~~~~---~~~~r---~tfIID~~G~Ir~~~~~~ 143 (215)
T PRK13191 79 ISHIEWVMWIEKNLKVEVPFPII--ADPMGNVAK-RLGMIHAESS---TATVR---AVFIVDDKGTVRLILYYP 143 (215)
T ss_pred HHHHHHHhhHHHhcCCCCceEEE--ECCchHHHH-HcCCcccccC---CceeE---EEEEECCCCEEEEEEecC
Confidence 43 4444442 246889999 777765544 2332211110 13456 999999999999985543
No 37
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.90 E-value=4.2e-23 Score=145.81 Aligned_cols=130 Identities=13% Similarity=0.175 Sum_probs=101.1
Q ss_pred ccCCCcccceEEecC-CC--CeeeccccCCcEEEEEec-cCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCC
Q 031257 6 IQNPESIFDLSVKDA-RG--HEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP 81 (163)
Q Consensus 6 ~~~~~~~p~f~l~~~-~G--~~~~l~~~~gk~vlv~f~-~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~ 81 (163)
...|..+|+|+.... +| ..++|++++||++||+|| ++|||.|..+++.|++++++|.++|+.+++||.|
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D------- 74 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD------- 74 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC-------
Confidence 357899999998774 45 467788999999999999 9999999999999999999999999999999985
Q ss_pred CCHHHHHHHHHhh---cCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCC
Q 031257 82 GSNDQIADFVCTR---FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT 153 (163)
Q Consensus 82 ~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~ 153 (163)
+....++|..+. .+++||++ +|+++.... .|+.+.... | ...| ++||||++|+|++.+...
T Consensus 75 -~~~~~~a~~~~~~~~~~l~fpll--sD~~~~ia~-~ygv~~~~~-g---~~~r---~tfIID~~G~I~~~~~~~ 138 (187)
T PRK10382 75 -THFTHKAWHSSSETIAKIKYAMI--GDPTGALTR-NFDNMREDE-G---LADR---ATFVVDPQGIIQAIEVTA 138 (187)
T ss_pred -CHHHHHHHHHhhccccCCceeEE--EcCchHHHH-HcCCCcccC-C---ceee---EEEEECCCCEEEEEEEeC
Confidence 677888887632 47899999 776655443 233221111 0 1225 999999999999986543
No 38
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.89 E-value=5.3e-23 Score=147.15 Aligned_cols=136 Identities=16% Similarity=0.198 Sum_probs=101.9
Q ss_pred CccccccCCCcccceEEec----CCCCeeeccccCCcEEEEEecc-CCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCC
Q 031257 1 MTSQFIQNPESIFDLSVKD----ARGHEVDLSTYKGKVLLIVNVA-SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQ 75 (163)
Q Consensus 1 m~~~~~~~~~~~p~f~l~~----~~G~~~~l~~~~gk~vlv~f~~-s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~ 75 (163)
|....+..|+++|+|++.+ .+|+.+++++++||++||+||+ +||+.|..+++.|++++++|+++|+.|++||+|
T Consensus 1 ~~~~~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d- 79 (199)
T PTZ00253 1 MSCGDAKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD- 79 (199)
T ss_pred CCccccccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC-
Confidence 4556678999999999765 4668999999999999999995 889999999999999999999999999999986
Q ss_pred CCCCCCCCHHHHHHHHHh-h-----cCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEE
Q 031257 76 FGEEEPGSNDQIADFVCT-R-----FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR 149 (163)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~ 149 (163)
+.....+|... + .+++||++ .|.++..+. .|+......+ ..+| ++||||++|+|++.
T Consensus 80 -------~~~~~~~~~~~~~~~~~~~~~~fpll--~D~~~~ia~-~ygv~~~~~g----~~~r---~~fiID~~G~i~~~ 142 (199)
T PTZ00253 80 -------SEYAHLQWTLQERKKGGLGTMAIPML--ADKTKSIAR-SYGVLEEEQG----VAYR---GLFIIDPKGMLRQI 142 (199)
T ss_pred -------CHHHHHHHHhChHhhCCccccccceE--ECcHhHHHH-HcCCcccCCC----ceEE---EEEEECCCCEEEEE
Confidence 34433434221 1 14789999 776655443 2332211111 2345 99999999999998
Q ss_pred eCCCC
Q 031257 150 YYPTT 154 (163)
Q Consensus 150 ~~g~~ 154 (163)
+.+..
T Consensus 143 ~~~~~ 147 (199)
T PTZ00253 143 TVNDM 147 (199)
T ss_pred EecCC
Confidence 76543
No 39
>PRK15000 peroxidase; Provisional
Probab=99.89 E-value=9.7e-23 Score=145.64 Aligned_cols=131 Identities=15% Similarity=0.245 Sum_probs=97.9
Q ss_pred cCCCcccceEEecCC--CC---eeecccc-CCcEEEEEecc-CCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCC
Q 031257 7 QNPESIFDLSVKDAR--GH---EVDLSTY-KGKVLLIVNVA-SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEE 79 (163)
Q Consensus 7 ~~~~~~p~f~l~~~~--G~---~~~l~~~-~gk~vlv~f~~-s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~ 79 (163)
..|..+|+|++.+.. |+ .++++++ +||++||+||+ +||+.|+.+++.|++++++|+++|+.|++||+|
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D----- 77 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD----- 77 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence 378999999999864 45 3466666 89999999998 599999999999999999999999999999986
Q ss_pred CCCCHHHHHHHHH---hhcC---CccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCC
Q 031257 80 EPGSNDQIADFVC---TRFK---SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT 153 (163)
Q Consensus 80 ~~~~~~~~~~~~~---~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~ 153 (163)
+....+.|.. ++.+ ++||++ +|.++..+. .|+......+ ..+| ++||||++|+|++.+.+.
T Consensus 78 ---~~~~~~~w~~~~~~~~g~~~i~fpll--sD~~~~ia~-~ygv~~~~~g----~~~r---~tfiID~~G~I~~~~~~~ 144 (200)
T PRK15000 78 ---SEFVHNAWRNTPVDKGGIGPVKYAMV--ADVKREIQK-AYGIEHPDEG----VALR---GSFLIDANGIVRHQVVND 144 (200)
T ss_pred ---CHHHHHHHHhhHHHhCCccccCceEE--ECCCcHHHH-HcCCccCCCC----cEEe---EEEEECCCCEEEEEEecC
Confidence 4444444432 2333 589999 777765443 3332211111 3566 999999999999987765
Q ss_pred CC
Q 031257 154 TS 155 (163)
Q Consensus 154 ~~ 155 (163)
.+
T Consensus 145 ~~ 146 (200)
T PRK15000 145 LP 146 (200)
T ss_pred CC
Confidence 54
No 40
>PRK13189 peroxiredoxin; Provisional
Probab=99.89 E-value=1e-22 Score=147.62 Aligned_cols=130 Identities=22% Similarity=0.402 Sum_probs=97.2
Q ss_pred cccCCCcccceEEecCCCCeeeccc-cCCcEEE-EEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCC
Q 031257 5 FIQNPESIFDLSVKDARGHEVDLST-YKGKVLL-IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (163)
Q Consensus 5 ~~~~~~~~p~f~l~~~~G~~~~l~~-~~gk~vl-v~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~ 82 (163)
.+.+|..+|+|++.+.+|+ +++++ ++||+++ ++||++|||+|..+++.|++++++|+++|+.|++||+|
T Consensus 8 ~~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D-------- 78 (222)
T PRK13189 8 MPLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID-------- 78 (222)
T ss_pred cccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC--------
Confidence 3558999999999999996 77777 4999665 57789999999999999999999999999999999986
Q ss_pred CHHHHHHHHHh---h--cCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCC
Q 031257 83 SNDQIADFVCT---R--FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP 152 (163)
Q Consensus 83 ~~~~~~~~~~~---~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g 152 (163)
+....++|++. . .+++||++ .|.++..+. .|+....... +..+| ++||||++|+|++....
T Consensus 79 ~~~~h~aw~~~~~~~~g~~i~fPll--sD~~~~ia~-~ygv~~~~~~---~~~~r---~tfIID~~G~Ir~~~~~ 144 (222)
T PRK13189 79 QVFSHIKWVEWIKEKLGVEIEFPII--ADDRGEIAK-KLGMISPGKG---TNTVR---AVFIIDPKGIIRAILYY 144 (222)
T ss_pred CHHHHHHHHHhHHHhcCcCcceeEE--EcCccHHHH-HhCCCccccC---CCcee---EEEEECCCCeEEEEEec
Confidence 44444444431 2 25789999 777665543 2332211110 02456 99999999999988653
No 41
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.89 E-value=7.1e-23 Score=175.54 Aligned_cols=138 Identities=18% Similarity=0.221 Sum_probs=112.1
Q ss_pred ccCCCcccceEEec--CCCCeeec-cccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCC
Q 031257 6 IQNPESIFDLSVKD--ARGHEVDL-STYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (163)
Q Consensus 6 ~~~~~~~p~f~l~~--~~G~~~~l-~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~ 82 (163)
...|.++|+|...+ .+|+++++ ++++||++||+|||+||++|+.++|.|++++++|+++++.|++|+.+.+..+ +
T Consensus 391 ~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~--~ 468 (1057)
T PLN02919 391 KKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNE--K 468 (1057)
T ss_pred cccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccccc--c
Confidence 34689999999876 68999998 6899999999999999999999999999999999998999999986533222 3
Q ss_pred CHHHHHHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
+.+++++++. ++++.||++ .|.+..... . .++ .++| +++|||++|+|+++..|....+++.+.
T Consensus 469 ~~~~~~~~~~-~~~i~~pvv--~D~~~~~~~----~-----~~V--~~iP---t~ilid~~G~iv~~~~G~~~~~~l~~~ 531 (1057)
T PLN02919 469 DLEAIRNAVL-RYNISHPVV--NDGDMYLWR----E-----LGV--SSWP---TFAVVSPNGKLIAQLSGEGHRKDLDDL 531 (1057)
T ss_pred cHHHHHHHHH-HhCCCccEE--ECCchHHHH----h-----cCC--Cccc---eEEEECCCCeEEEEEecccCHHHHHHH
Confidence 5678889987 899999998 665543221 1 133 5666 999999999999999998877776654
No 42
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.89 E-value=2e-22 Score=133.62 Aligned_cols=121 Identities=22% Similarity=0.330 Sum_probs=100.7
Q ss_pred cceEEecCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 031257 13 FDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC 92 (163)
Q Consensus 13 p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~ 92 (163)
|+|++++.+|+.+++++++|++++|+||++||++|+.+++.|++++++ +.+++|+++ .++.+.+.++.+
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~------~~~~~~~~~~~~ 69 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALR------SGDDGAVARFMQ 69 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEcc------CCCHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999876 568888876 246888999987
Q ss_pred hhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 93 TRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 93 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
+++++||++ .|.++.... . .++ .++| +++|+|++| |++++.|..+++++.+.
T Consensus 70 -~~~~~~~~~--~d~~~~~~~----~-----~~i--~~~P---~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 70 -KKGYGFPVI--NDPDGVISA----R-----WGV--SVTP---AIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred -HcCCCccEE--ECCCcHHHH----h-----CCC--Cccc---EEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 788999998 665543322 1 133 4555 999999999 99999999999888654
No 43
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.88 E-value=3.6e-22 Score=146.91 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=97.0
Q ss_pred ccCCCcccceEEec-CCCC--eeecccc-CCcEEEEEec-cCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCC
Q 031257 6 IQNPESIFDLSVKD-ARGH--EVDLSTY-KGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE 80 (163)
Q Consensus 6 ~~~~~~~p~f~l~~-~~G~--~~~l~~~-~gk~vlv~f~-~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~ 80 (163)
+.+|+.+|+|++.+ .+|+ .++++++ +||++||+|| ++|||+|..+++.|++++++|+++|+.|++||+|
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D------ 141 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD------ 141 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC------
Confidence 45899999999987 4664 6899998 8888888877 8999999999999999999999999999999986
Q ss_pred CCCHHHHHHHHHh---h---cCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeC
Q 031257 81 PGSNDQIADFVCT---R---FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYY 151 (163)
Q Consensus 81 ~~~~~~~~~~~~~---~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~ 151 (163)
+....++|... + .+++||++ +|.++..+. .|+.... . | ..+| ++||||++|+|++.+.
T Consensus 142 --s~~~h~aw~~~~~~~~g~~~l~fPlL--sD~~~~iak-ayGv~~~-~-g---~a~R---~tFIID~dG~I~~~~~ 205 (261)
T PTZ00137 142 --SPFSHKAWKELDVRQGGVSPLKFPLF--SDISREVSK-SFGLLRD-E-G---FSHR---ASVLVDKAGVVKHVAV 205 (261)
T ss_pred --CHHHHHHHHhhhhhhccccCcceEEE--EcCChHHHH-HcCCCCc-C-C---ceec---EEEEECCCCEEEEEEE
Confidence 44445555431 1 57889999 776654432 2222111 0 1 2466 9999999999999863
No 44
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.88 E-value=1.3e-22 Score=141.95 Aligned_cols=132 Identities=15% Similarity=0.192 Sum_probs=99.8
Q ss_pred ccCCCcccceEEecC-----CC-----CeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEE------E
Q 031257 6 IQNPESIFDLSVKDA-----RG-----HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEI------L 69 (163)
Q Consensus 6 ~~~~~~~p~f~l~~~-----~G-----~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~i------i 69 (163)
+..|.++|..++.+. +| ++++.++++||+.||+|||+||++|+.+.|.|.++. ++|+.+ +
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~----~~~~~~~~y~~t~ 98 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIK----AAKFPPVKYQTTT 98 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHH----HcCCCcccccceE
Confidence 567889999887765 33 567788899999999999999999999999999993 346888 9
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHhhcCCccc---eeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeE-EEECCCCc
Q 031257 70 AFPCNQFGEEEPGSNDQIADFVCTRFKSEFP---IFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAK-FLVDKNGQ 145 (163)
Q Consensus 70 ~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~-~lid~~G~ 145 (163)
+|+.|+ .......-++.|++ +.+..|| ++ .|.++.... .| |+ .++| ++ ||||++|+
T Consensus 99 ~IN~dd---~~~~~~~fVk~fie-~~~~~~P~~~vl--lD~~g~v~~-~~--------gv--~~~P---~T~fVIDk~Gk 158 (184)
T TIGR01626 99 IINADD---AIVGTGMFVKSSAK-KGKKENPWSQVV--LDDKGAVKN-AW--------QL--NSED---SAIIVLDKTGK 158 (184)
T ss_pred EEECcc---chhhHHHHHHHHHH-HhcccCCcceEE--ECCcchHHH-hc--------CC--CCCC---ceEEEECCCCc
Confidence 999862 11123334566665 6788888 77 676654332 11 33 5666 77 89999999
Q ss_pred EEEEeCCCCCcchhhh
Q 031257 146 VVDRYYPTTSLLSLEV 161 (163)
Q Consensus 146 i~~~~~g~~~~~~~~~ 161 (163)
|++++.|..+.+++++
T Consensus 159 Vv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 159 VKFVKEGALSDSDIQT 174 (184)
T ss_pred EEEEEeCCCCHHHHHH
Confidence 9999999988887765
No 45
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.88 E-value=1.4e-21 Score=126.92 Aligned_cols=116 Identities=32% Similarity=0.590 Sum_probs=96.3
Q ss_pred ceEEecCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 031257 14 DLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCT 93 (163)
Q Consensus 14 ~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~ 93 (163)
+|.+.+.+|+.+++++++||+++|.||++||+.|+..++.|.++.+++.+.++.+++|++|. .+.+.+++++.
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~------~~~~~~~~~~~- 73 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD------DDPAAVKAFLK- 73 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC------CCHHHHHHHHH-
Confidence 47888999999999999999999999999999999999999999999987789999999862 14899999997
Q ss_pred hcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCC
Q 031257 94 RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP 152 (163)
Q Consensus 94 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g 152 (163)
+++.+|+++ .|.+..... .| +. .++| +++|+|++|++++++.|
T Consensus 74 ~~~~~~~~~--~~~~~~~~~-~~--------~~--~~~P---~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 74 KYGITFPVL--LDPDGELAK-AY--------GV--RGLP---TTFLIDRDGRIRARHVG 116 (116)
T ss_pred HcCCCcceE--EcCcchHHH-hc--------Cc--Cccc---eEEEECCCCcEEEEecC
Confidence 788999998 665332221 11 22 4555 99999999999998765
No 46
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.87 E-value=5.2e-22 Score=133.35 Aligned_cols=112 Identities=19% Similarity=0.294 Sum_probs=83.2
Q ss_pred CCCC-eeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCC--CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 031257 20 ARGH-EVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVCTRFK 96 (163)
Q Consensus 20 ~~G~-~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~--~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~ 96 (163)
+||+ ++++++++||++||+||++||++|+.+++.|++++++++++ ++.+++|++| .+.+++++|++ +++
T Consensus 4 ~~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d-------~~~~~~~~~~~-~~~ 75 (132)
T cd02964 4 LDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRD-------RSEESFNEYFS-EMP 75 (132)
T ss_pred ccCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecC-------CCHHHHHHHHh-cCC
Confidence 4555 99999999999999999999999999999999999999875 7999999987 45678889987 666
Q ss_pred CccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCC
Q 031257 97 SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP 152 (163)
Q Consensus 97 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g 152 (163)
.+..+...|. ... .. .....++ .++| +++|||++|+|+++...
T Consensus 76 -~~~~~~~~d~---~~~---~~-~~~~~~v--~~iP---t~~lid~~G~iv~~~~~ 118 (132)
T cd02964 76 -PWLAVPFEDE---ELR---EL-LEKQFKV--EGIP---TLVVLKPDGDVVTTNAR 118 (132)
T ss_pred -CeEeeccCcH---HHH---HH-HHHHcCC--CCCC---EEEEECCCCCEEchhHH
Confidence 4444310110 000 01 1111133 5666 99999999999987543
No 47
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.85 E-value=1e-21 Score=131.64 Aligned_cols=112 Identities=21% Similarity=0.356 Sum_probs=82.6
Q ss_pred EecCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCC--CeEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 031257 17 VKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVCTR 94 (163)
Q Consensus 17 l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~--~~~ii~is~d~~~~~~~~~~~~~~~~~~~~ 94 (163)
+.+.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ ++.+++|++| .+.+++++++. +
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d-------~~~~~~~~~~~-~ 74 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWD-------RDEESFNDYFS-K 74 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECC-------CCHHHHHHHHH-c
Confidence 567899999999999999999999999999999999999999998764 7999999987 45677788776 3
Q ss_pred cCC-ccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeC
Q 031257 95 FKS-EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYY 151 (163)
Q Consensus 95 ~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~ 151 (163)
.+. .+++. + .. ....... ..|+ .++| +++|||++|+|+.+..
T Consensus 75 ~~~~~~~~~---~---~~---~~~~~~~-~~~v--~~~P---~~~lid~~G~i~~~~~ 117 (131)
T cd03009 75 MPWLAVPFS---D---RE---RRSRLNR-TFKI--EGIP---TLIILDADGEVVTTDA 117 (131)
T ss_pred CCeeEcccC---C---HH---HHHHHHH-HcCC--CCCC---EEEEECCCCCEEcccH
Confidence 321 12111 1 00 0011111 1233 5566 9999999999998743
No 48
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.85 E-value=2.2e-21 Score=135.18 Aligned_cols=115 Identities=15% Similarity=0.211 Sum_probs=84.7
Q ss_pred CCCcccceEEecCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHH
Q 031257 8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQI 87 (163)
Q Consensus 8 ~~~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~ 87 (163)
...+.|+|++ .+|+.+++++++ ||+||++|||+|++++|.|+++++++ ++.+++|++|. .
T Consensus 51 ~~~~~~~f~l--~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~-------~---- 110 (181)
T PRK13728 51 EKPAPRWFRL--SNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDG-------Q---- 110 (181)
T ss_pred CCCCCCccCC--CCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCC-------C----
Confidence 3445667776 499999999997 77899999999999999999999987 49999999862 1
Q ss_pred HHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEE-EeCCCCCcchhhhc
Q 031257 88 ADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVD-RYYPTTSLLSLEVI 162 (163)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~-~~~g~~~~~~~~~~ 162 (163)
....||++ .|....... ..+ |....++| ++||||++|++++ .+.|..+.+++++.
T Consensus 111 -------~~~~fPv~--~dd~~~~~~---~~~-----g~~~~~iP---ttfLId~~G~i~~~~~~G~~~~~~L~~~ 166 (181)
T PRK13728 111 -------GDTAFPEA--LPAPPDVMQ---TFF-----PNIPVATP---TTFLVNVNTLEALPLLQGATDAAGFMAR 166 (181)
T ss_pred -------CCCCCceE--ecCchhHHH---HHh-----CCCCCCCC---eEEEEeCCCcEEEEEEECCCCHHHHHHH
Confidence 13689998 543221111 111 10003556 9999999999974 68999988777654
No 49
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.84 E-value=1.9e-20 Score=128.99 Aligned_cols=131 Identities=18% Similarity=0.204 Sum_probs=99.7
Q ss_pred CCCcccceEEecCC---CCeeeccc-cCCcEEEEEec-cCCCCCChhh-HHHHHHHHHHhcCCCe-EEEEEecCCCCCCC
Q 031257 8 NPESIFDLSVKDAR---GHEVDLST-YKGKVLLIVNV-ASKCGMTNSN-YIELSQLYDKYKDQGL-EILAFPCNQFGEEE 80 (163)
Q Consensus 8 ~~~~~p~f~l~~~~---G~~~~l~~-~~gk~vlv~f~-~s~C~~C~~~-~~~l~~~~~~~~~~~~-~ii~is~d~~~~~~ 80 (163)
+|+.+|+|++.+.+ |+.++|++ ++|+++||+|+ +.|||.|..+ ++.|++.+.+|.++|+ .|++||.|
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D------ 74 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN------ 74 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC------
Confidence 58899999999985 99999999 58876666665 8999999999 9999999999999998 69999985
Q ss_pred CCCHHHHHHHHHhhcCC--ccceeeeeecCCCcchhHHHHhHhCC-CcccCCccccCeeEEEECCCCcEEEEeCCCC
Q 031257 81 PGSNDQIADFVCTRFKS--EFPIFEKIDVNGEHASPLYKLLKSGK-WGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT 154 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~ 154 (163)
+....++|+. +++. +||++ +|.++.... .|+...... .|......+ .+|||| +|+|++.+....
T Consensus 75 --~~~~~~~~~~-~~~~~~~f~lL--sD~~~~~~~-~ygv~~~~~~~~~~~~~~R---~~fiId-~g~I~~~~~~~~ 141 (155)
T cd03013 75 --DPFVMKAWGK-ALGAKDKIRFL--ADGNGEFTK-ALGLTLDLSAAGGGIRSKR---YALIVD-DGKVKYLFVEED 141 (155)
T ss_pred --CHHHHHHHHH-hhCCCCcEEEE--ECCCHHHHH-HcCCCccccccCCcceeee---EEEEEC-CCEEEEEEEecC
Confidence 7888888987 7776 89999 777654443 333322211 011001234 789999 699999866544
No 50
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3e-20 Score=128.91 Aligned_cols=131 Identities=19% Similarity=0.315 Sum_probs=105.3
Q ss_pred ccCCCcccceEEecC-CCC---eeeccccCCcEEEEEec-cCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCC
Q 031257 6 IQNPESIFDLSVKDA-RGH---EVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE 80 (163)
Q Consensus 6 ~~~~~~~p~f~l~~~-~G~---~~~l~~~~gk~vlv~f~-~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~ 80 (163)
+..|.++|+|+.... .|. +++++++.|||++++|| +...+.|..++..+++.+.+|+++|++++|+|+|.
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds----- 77 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDS----- 77 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCc-----
Confidence 457999999999998 774 99999998899999999 67889999999999999999999999999999972
Q ss_pred CCCHHHHHHHHHhhcC---CccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeC
Q 031257 81 PGSNDQIADFVCTRFK---SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYY 151 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~ 151 (163)
..+...|.+...+..+ ++||++ .|.+++.++ .|+.+....+ .++. .+|||||+|+|++...
T Consensus 78 ~fsH~aW~~~~~~~~gi~~i~~Pmi--aD~~~~vs~-~ygvl~~~~g----~a~R---~~FIIDp~g~ir~~~v 141 (194)
T COG0450 78 VFSHKAWKATIREAGGIGKIKFPMI--ADPKGEIAR-AYGVLHPEEG----LALR---GTFIIDPDGVIRHILV 141 (194)
T ss_pred HHHHHHHHhcHHhcCCccceecceE--EcCchhHHH-HcCCcccCCC----ccee---EEEEECCCCeEEEEEE
Confidence 2344444444443566 689999 888887765 4555443333 4677 8999999999998844
No 51
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=99.81 E-value=1e-18 Score=112.33 Aligned_cols=108 Identities=67% Similarity=1.149 Sum_probs=99.6
Q ss_pred ccceEEecCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 031257 12 IFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV 91 (163)
Q Consensus 12 ~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~ 91 (163)
+.+|++.+++|+.++|++++||++||.=.||.|+.-. +...|++++++|+++|+.|+++.+++++.++.++.+++++++
T Consensus 1 iYdf~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 1 IYDFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GGGSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred CcceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence 3589999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HhhcCCccceeeeeecCCCcchhHHHHhH
Q 031257 92 CTRFKSEFPIFEKIDVNGEHASPLYKLLK 120 (163)
Q Consensus 92 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 120 (163)
..+++..||++...+.+|..+.++|.+++
T Consensus 80 ~~~~~~~F~vf~ki~VnG~~ahPly~~LK 108 (108)
T PF00255_consen 80 KEKFGVTFPVFEKIDVNGPDAHPLYKYLK 108 (108)
T ss_dssp CHCHT-SSEEBS-BBSSSTTB-HHHHHHH
T ss_pred HhccCCcccceEEEEecCCCCcHHHHHhC
Confidence 87789999999999999999999998863
No 52
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.80 E-value=9.8e-20 Score=115.44 Aligned_cols=94 Identities=24% Similarity=0.376 Sum_probs=69.7
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhc-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYK-DQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~-~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
||+++|.||++||++|+++++.|.+++++++ +.++.+|+|++| .+.++++++++ +.+.++..+ ......
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d-------~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 70 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD-------EDEEEWKKFLK-KNNFPWYNV--PFDDDN 70 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S-------SSHHHHHHHHH-TCTTSSEEE--ETTTHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC-------CCHHHHHHHHH-hcCCCceEE--eeCcch
Confidence 7999999999999999999999999999999 457999999997 57889999987 666666665 221111
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCCcE
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQV 146 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i 146 (163)
...+... .++ .++| +++|+|++|+|
T Consensus 71 -~~~l~~~-----~~i--~~iP---~~~lld~~G~I 95 (95)
T PF13905_consen 71 -NSELLKK-----YGI--NGIP---TLVLLDPDGKI 95 (95)
T ss_dssp -HHHHHHH-----TT---TSSS---EEEEEETTSBE
T ss_pred -HHHHHHH-----CCC--CcCC---EEEEECCCCCC
Confidence 1112111 133 5566 99999999987
No 53
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.79 E-value=5.1e-19 Score=124.02 Aligned_cols=137 Identities=19% Similarity=0.286 Sum_probs=99.7
Q ss_pred CCCcccceEEecCCCCeeeccccCCcEEEEEeccCCCC-CChhhHHHHHHHHHHhcCC--CeEEEEEecCCCCCCCCCCH
Q 031257 8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCG-MTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSN 84 (163)
Q Consensus 8 ~~~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~-~C~~~~~~l~~~~~~~~~~--~~~ii~is~d~~~~~~~~~~ 84 (163)
.....|+|+|.+.+|+.+++++++||++||.|..+.|| .|...+..|+++++++.+. .+++++||+| ++.|++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD----P~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD----PERDTP 103 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS----TTTC-H
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC----CCCCCH
Confidence 44567899999999999999999999999999999998 5999999999999988764 6999999998 567899
Q ss_pred HHHHHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCC------CcccCCccccCeeEEEECCCCcEEEEeCC
Q 031257 85 DQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGK------WGIFGDDIQWNFAKFLVDKNGQVVDRYYP 152 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~ip~~~~~~lid~~G~i~~~~~g 152 (163)
+.+++|++ .++.++..++.... ....+...+.... .+.....+-|...+|||||+|+|+..+.+
T Consensus 104 ~~L~~Y~~-~~~~~~~~ltg~~~---~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 104 EVLKKYAK-KFGPDFIGLTGSRE---EIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHHHHH-CHTTTCEEEEEEHH---HHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HHHHHHHH-hcCCCcceeEeCHH---HHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 99999998 78888877632211 1111211111000 00001345567789999999999998754
No 54
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.75 E-value=4e-18 Score=116.74 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=68.5
Q ss_pred CCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccce
Q 031257 22 GHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPI 101 (163)
Q Consensus 22 G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (163)
|+.+++++ +.||+||++||++|+.++|.|+++++++ ++.+++|++|. .. . ..||.
T Consensus 44 G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~-------~~--~---------~~fp~ 98 (153)
T TIGR02738 44 GRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG-------QG--L---------TGFPD 98 (153)
T ss_pred chhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC-------Cc--c---------ccccc
Confidence 55555544 4599999999999999999999999887 48899999862 11 0 13555
Q ss_pred eeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcE-EEEeCCCCCcchhhhc
Q 031257 102 FEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQV-VDRYYPTTSLLSLEVI 162 (163)
Q Consensus 102 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i-~~~~~g~~~~~~~~~~ 162 (163)
. .+.+.......|. .+++ .++| ++||||++|++ +.++.|..+.+++++.
T Consensus 99 ~--~~~~~~~~~~~~~-----~~~v--~~iP---Tt~LID~~G~~i~~~~~G~~s~~~l~~~ 148 (153)
T TIGR02738 99 P--LPATPEVMQTFFP-----NPRP--VVTP---ATFLVNVNTRKAYPVLQGAVDEAELANR 148 (153)
T ss_pred c--cCCchHHHHHHhc-----cCCC--CCCC---eEEEEeCCCCEEEEEeecccCHHHHHHH
Confidence 4 3322211111110 0022 4556 99999999886 4468898888776653
No 55
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.69 E-value=1.3e-15 Score=109.40 Aligned_cols=141 Identities=16% Similarity=0.224 Sum_probs=101.2
Q ss_pred ceEEecCCCCeeeccccCCcEEEEEeccCCCC-CChhhHHHHHHHHHHhc---CCCeEEEEEecCCCCCCCCCCHHHHHH
Q 031257 14 DLSVKDARGHEVDLSTYKGKVLLIVNVASKCG-MTNSNYIELSQLYDKYK---DQGLEILAFPCNQFGEEEPGSNDQIAD 89 (163)
Q Consensus 14 ~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~-~C~~~~~~l~~~~~~~~---~~~~~ii~is~d~~~~~~~~~~~~~~~ 89 (163)
+|++++.+|+.+++.+++||++||+|..|.|| .|..++..|.+++++.. ...++++.|++| ++.|+++.+++
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD----PerDtp~~lk~ 124 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD----PERDTPEVLKK 124 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC----CCCCCHHHHHH
Confidence 79999999999999999999999999999999 69999999999999988 336999999998 67889999999
Q ss_pred HHHhhcCCccceeeeeecCCCcchhHHHHhHhCC-----CcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhh
Q 031257 90 FVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGK-----WGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161 (163)
Q Consensus 90 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (163)
|+.-.....|-.+ ... .+......+...... .+.....+-|...+||||++|++...+.+..+++++.+
T Consensus 125 Y~~~~~~~~~~~l--tg~-~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~ 198 (207)
T COG1999 125 YAELNFDPRWIGL--TGT-PEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAA 198 (207)
T ss_pred HhcccCCCCeeee--eCC-HHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHH
Confidence 9850122223333 111 111122222221110 01012456666689999999999999887777666654
No 56
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.68 E-value=9.6e-17 Score=108.96 Aligned_cols=101 Identities=16% Similarity=0.211 Sum_probs=75.1
Q ss_pred EecCCCCeeecccc--CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 031257 17 VKDARGHEVDLSTY--KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTR 94 (163)
Q Consensus 17 l~~~~G~~~~l~~~--~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~ 94 (163)
+.+++++...+++. +|+++||+||++||++|+...|.|.++.+++.+. +.++.|++|. . ...+.+. +
T Consensus 3 ~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~--------~-~~~~~~~-~ 71 (142)
T cd02950 3 LEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDN--------P-KWLPEID-R 71 (142)
T ss_pred hHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCC--------c-ccHHHHH-H
Confidence 44555665655553 6899999999999999999999999999999765 8899998751 1 1111111 1
Q ss_pred cCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 95 FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 95 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
+ ++ .++| +++++|++|+++.+..|..+.+++.+.
T Consensus 72 ~-----------------------------~V--~~iP---t~v~~~~~G~~v~~~~G~~~~~~l~~~ 105 (142)
T cd02950 72 Y-----------------------------RV--DGIP---HFVFLDREGNEEGQSIGLQPKQVLAQN 105 (142)
T ss_pred c-----------------------------CC--CCCC---EEEEECCCCCEEEEEeCCCCHHHHHHH
Confidence 0 22 5666 999999999999999998877776654
No 57
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=6.8e-16 Score=104.23 Aligned_cols=134 Identities=16% Similarity=0.229 Sum_probs=102.6
Q ss_pred cccCCCcccceEEecCCCCeeeccccCCc-EEEEEec-cCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCC
Q 031257 5 FIQNPESIFDLSVKDARGHEVDLSTYKGK-VLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (163)
Q Consensus 5 ~~~~~~~~p~f~l~~~~G~~~~l~~~~gk-~vlv~f~-~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~ 82 (163)
.+..|+.+|+|+|.+.||++++|.++.|+ ++|++|| +...|.|.++...++.-+++++..+.+++|+|.|
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D-------- 133 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD-------- 133 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC--------
Confidence 46789999999999999999999999875 8888888 5788999999999999999999989999999975
Q ss_pred CHHHHHHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCc
Q 031257 83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSL 156 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~ 156 (163)
+....++|.. +++++|-++ +|+.++.... ++.-..-.+| ..+. ..||+|++|.....+.-..+|
T Consensus 134 ~s~sqKaF~s-KqnlPYhLL--SDpk~e~ik~-lGa~k~p~gg---~~~R---sh~if~kg~~k~~ik~~~isP 197 (211)
T KOG0855|consen 134 DSASQKAFAS-KQNLPYHLL--SDPKNEVIKD-LGAPKDPFGG---LPGR---SHYIFDKGGVKQLIKNNQISP 197 (211)
T ss_pred chHHHHHhhh-hccCCeeee--cCcchhHHHH-hCCCCCCCCC---cccc---eEEEEecCCeEEEEEecccCc
Confidence 6777788876 899999999 8888766542 2221111111 2344 678888876555544444444
No 58
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.61 E-value=5.1e-15 Score=95.21 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=62.7
Q ss_pred ccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecC
Q 031257 29 TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN 108 (163)
Q Consensus 29 ~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 108 (163)
+.+|+++||.||++||++|+.+.|.|.+++++++ ++.++.|+.| ......+++. ++
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d--------~~~~~~~l~~-~~------------- 67 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGD--------ENDSTMELCR-RE------------- 67 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECC--------CChHHHHHHH-Hc-------------
Confidence 3468999999999999999999999999999983 4889999875 1222333333 21
Q ss_pred CCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhh
Q 031257 109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161 (163)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (163)
++ .++| +++++ ++|+++.++.|.. ++++++
T Consensus 68 ----------------~V--~~~P---t~~~~-~~G~~v~~~~G~~-~~~l~~ 97 (103)
T cd02985 68 ----------------KI--IEVP---HFLFY-KDGEKIHEEEGIG-PDELIG 97 (103)
T ss_pred ----------------CC--CcCC---EEEEE-eCCeEEEEEeCCC-HHHHHH
Confidence 22 5667 75555 8999999999954 445443
No 59
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.57 E-value=7.3e-15 Score=99.24 Aligned_cols=114 Identities=18% Similarity=0.272 Sum_probs=87.8
Q ss_pred eEEecCCCCeeecc-ccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCC--CeEEEEEecCCCCCCCCCCHHHHHHHH
Q 031257 15 LSVKDARGHEVDLS-TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFV 91 (163)
Q Consensus 15 f~l~~~~G~~~~l~-~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~--~~~ii~is~d~~~~~~~~~~~~~~~~~ 91 (163)
..+...+|..+..+ .++||+|.++|-|.|||+|+...|.|.+++++.++. .+.||.||.| ++.++...|.
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D-------~~~~~~~~y~ 87 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD-------RDEESLDEYM 87 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC-------CCHHHHHHHH
Confidence 67888899988887 579999999999999999999999999999998875 5999999987 6888999999
Q ss_pred HhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEE
Q 031257 92 CTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR 149 (163)
Q Consensus 92 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~ 149 (163)
. .++..|..+...|..-...... +++ .+|| +..++.++|.++..
T Consensus 88 ~-~~~~~W~~iPf~d~~~~~l~~k--------y~v--~~iP---~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 88 L-EHHGDWLAIPFGDDLIQKLSEK--------YEV--KGIP---ALVILKPDGTVVTE 131 (157)
T ss_pred H-hcCCCeEEecCCCHHHHHHHHh--------ccc--CcCc---eeEEecCCCCEehH
Confidence 8 5666666652122111111111 122 5677 99999999988865
No 60
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.54 E-value=7.5e-15 Score=109.45 Aligned_cols=102 Identities=21% Similarity=0.221 Sum_probs=72.9
Q ss_pred CeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCcccee
Q 031257 23 HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIF 102 (163)
Q Consensus 23 ~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (163)
+...+++++|+++||+||++||++|+.+.|.|+++.+++ ++.|++|++|. ... ..||..
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~-------~~~-----------~~fp~~ 215 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDG-------GPL-----------PGFPNA 215 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCC-------Ccc-----------ccCCcc
Confidence 346788899999999999999999999999999999987 48899999872 110 125543
Q ss_pred eeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECC-CCcEEEEeCCCCCcchhhhc
Q 031257 103 EKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDK-NGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 103 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~-~G~i~~~~~g~~~~~~~~~~ 162 (163)
+.+.... .. .|+ .++| ++||+|+ .|++.....|..+.++|.+.
T Consensus 216 ---~~d~~la----~~-----~gV--~~vP---tl~Lv~~~~~~v~~v~~G~~s~~eL~~~ 259 (271)
T TIGR02740 216 ---RPDAGQA----QQ-----LKI--RTVP---AVFLADPDPNQFTPIGFGVMSADELVDR 259 (271)
T ss_pred ---cCCHHHH----HH-----cCC--CcCC---eEEEEECCCCEEEEEEeCCCCHHHHHHH
Confidence 1111111 11 133 5566 9999999 46666667788888777654
No 61
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3e-13 Score=90.18 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=99.6
Q ss_pred ccccCCCcccceEEecCCCCeeeccccCCcEEEEEecc-CCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCC
Q 031257 4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVA-SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (163)
Q Consensus 4 ~~~~~~~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~-s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~ 82 (163)
..+++|+.+|+|++.+.|.+.++++++.||..+|..+. -..|.|..+...+++...++.+ ..++.||+|
T Consensus 16 ~~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~D-------- 85 (158)
T COG2077 16 NEPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMD-------- 85 (158)
T ss_pred CCCccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCC--------
Confidence 45789999999999999999999999999977777765 5789999999999999998866 899999985
Q ss_pred CHHHHHHHHHhhcCCc-cceeeeeecCCCcchhHHHHhHhCCC--cccCCccccCeeEEEECCCCcEEEEeC
Q 031257 83 SNDQIADFVCTRFKSE-FPIFEKIDVNGEHASPLYKLLKSGKW--GIFGDDIQWNFAKFLVDKNGQVVDRYY 151 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~ip~~~~~~lid~~G~i~~~~~ 151 (163)
.+-..++|+. .+++. -..+ +|.....+...|+..+.+.+ |+.+ + +.|++|.+|+|+|...
T Consensus 86 LPFAq~RfC~-aeGi~nv~~l--Sd~r~~~Fge~yGv~I~egpL~gLlA---R---aV~V~De~g~V~y~el 148 (158)
T COG2077 86 LPFAQKRFCG-AEGIENVITL--SDFRDRAFGENYGVLINEGPLAGLLA---R---AVFVLDENGKVTYSEL 148 (158)
T ss_pred ChhHHhhhhh-hcCcccceEh--hhhhhhhhhHhhCEEeccccccCeee---e---EEEEEcCCCcEEEEEc
Confidence 8899999998 67775 3334 55444444444555444432 3322 2 5799999999998743
No 62
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.50 E-value=1e-13 Score=89.21 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=67.7
Q ss_pred CCcEEEEEeccCCCCCChhhHHHH---HHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeec
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV 107 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l---~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 107 (163)
+|+++||.||++||++|+...+.+ .++.+.+++ ++.++.|+++. +......+++ ++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~~~~~~~~~-~~------------ 68 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTK-------NDPEITALLK-RF------------ 68 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCC-------CCHHHHHHHH-Hc------------
Confidence 578999999999999999998877 577777765 58999998751 1222233332 21
Q ss_pred CCCcchhHHHHhHhCCCcccCCccccCeeEEEECC-CCcEEEEeCCCCCcchhhhcC
Q 031257 108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDK-NGQVVDRYYPTTSLLSLEVIL 163 (163)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~-~G~i~~~~~g~~~~~~~~~~l 163 (163)
++ .++| +++++++ +|+++.++.|..+.+++.+.|
T Consensus 69 -----------------~i--~~~P---ti~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 69 -----------------GV--FGPP---TYLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred -----------------CC--CCCC---EEEEECCCCCCCCcccccccCHHHHHHHh
Confidence 22 5566 9999998 999999999999988887764
No 63
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=8.5e-14 Score=94.94 Aligned_cols=140 Identities=14% Similarity=0.260 Sum_probs=99.2
Q ss_pred CccccccCCCcccceEEecCCCCeeeccccCCc-EEEEEec-cCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCC
Q 031257 1 MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGK-VLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGE 78 (163)
Q Consensus 1 m~~~~~~~~~~~p~f~l~~~~G~~~~l~~~~gk-~vlv~f~-~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~ 78 (163)
|....+..|+.+|+|+..+.-|+ +.+.|+.|. |.+++=. +...|+|..++.++.+++.+|..+|+.++++|+|.+..
T Consensus 1 m~~~~l~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ves 79 (224)
T KOG0854|consen 1 MDGPRLRLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVES 79 (224)
T ss_pred CCCCcccccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHH
Confidence 55667889999999999999998 899999774 5544444 78899999999999999999999999999999985433
Q ss_pred CCCCCHHHHHHHHHhhcC--CccceeeeeecCCCcchhHHHHhHhCCCcc--cCCccccCeeEEEECCCCcEEEE
Q 031257 79 EEPGSNDQIADFVCTRFK--SEFPIFEKIDVNGEHASPLYKLLKSGKWGI--FGDDIQWNFAKFLVDKNGQVVDR 149 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~ip~~~~~~lid~~G~i~~~ 149 (163)
+. +=.++++.|.. ..+ ++||++ .|.+.+.+. .+..+.....+. .+..+. ..|+||++.+|+..
T Consensus 80 H~-~Wi~DIks~~~-~~~~~~~yPII--aD~~rela~-~l~MlD~~e~~~~~~~~T~R---avfvi~pdkKirLs 146 (224)
T KOG0854|consen 80 HK-DWIKDIKSYAK-VKNHSVPYPII--ADPNRELAF-LLNMLDPEEKKNIGDGKTVR---AVFVIDPDKKIRLS 146 (224)
T ss_pred HH-HHHHHHHHHHh-ccCCCCCCCee--cCCchhhhh-hhcccCHhHcCCCCCCceEE---EEEEECCCceEEEE
Confidence 22 11334455554 333 789998 777765543 233332111111 012345 68999999999866
No 64
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.50 E-value=8.7e-14 Score=88.99 Aligned_cols=87 Identities=18% Similarity=0.237 Sum_probs=63.0
Q ss_pred cccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeec
Q 031257 28 STYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV 107 (163)
Q Consensus 28 ~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 107 (163)
++++||++||.||++||++|+...|.+.++.+++++ +.++.|+.+ +... ..+. ++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~-------~~~~---~l~~-~~------------ 68 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEES-------SIKP---SLLS-RY------------ 68 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECC-------CCCH---HHHH-hc------------
Confidence 457899999999999999999999999999999864 778887642 0011 1111 10
Q ss_pred CCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhcC
Q 031257 108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVIL 163 (163)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (163)
++ .++| |++++++ | .+.++.|..+.+.+.+.|
T Consensus 69 -----------------~V--~~~P---T~~lf~~-g-~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 69 -----------------GV--VGFP---TILLFNS-T-PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred -----------------CC--eecC---EEEEEcC-C-ceeEecCCCCHHHHHhhC
Confidence 22 4566 9999975 5 667888988888776543
No 65
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.48 E-value=1.5e-13 Score=99.03 Aligned_cols=139 Identities=20% Similarity=0.262 Sum_probs=93.5
Q ss_pred cceEEecCCCCeeeccccCCcEEEEEeccCCCC-CChhhHHHHHHHHHHhcCC-C--eEEEEEecCCCCCCCCCCHHHHH
Q 031257 13 FDLSVKDARGHEVDLSTYKGKVLLIVNVASKCG-MTNSNYIELSQLYDKYKDQ-G--LEILAFPCNQFGEEEPGSNDQIA 88 (163)
Q Consensus 13 p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~-~C~~~~~~l~~~~~~~~~~-~--~~ii~is~d~~~~~~~~~~~~~~ 88 (163)
-+|+|.+.+|+.++..+++|||+||+|-.|.|| .|..+|..|.+...+.++. + +.-+.|++| ++.|+.+.++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD----PeRD~~~~~~ 195 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD----PERDSVEVVA 195 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC----cccCCHHHHH
Confidence 469999999999999999999999999999999 6999999999999988775 3 335889987 6789999999
Q ss_pred HHHHhhcCCccceeeeeecCCCcch-----hHHHHhHhCCCcccC--CccccCeeEEEECCCCcEEEEeCCCCCcchhhh
Q 031257 89 DFVCTRFKSEFPIFEKIDVNGEHAS-----PLYKLLKSGKWGIFG--DDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161 (163)
Q Consensus 89 ~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~~~~~~~~~~~~--~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (163)
+|++ ++.... ...+|..-. .-|...-+..+.... .-|-|.=.+|||||+|+.+..+.-..+++++.+
T Consensus 196 eY~~-eF~pkl-----lGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~ 269 (280)
T KOG2792|consen 196 EYVS-EFHPKL-----LGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELAD 269 (280)
T ss_pred HHHH-hcChhh-----hcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHH
Confidence 9998 443322 222222110 001000000000000 112212247999999999975444446666554
No 66
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.47 E-value=3.4e-13 Score=85.41 Aligned_cols=85 Identities=19% Similarity=0.315 Sum_probs=65.8
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
+++++||.||++||++|+...+.+.++.+.+++. +.++.|+++ .... .+. ++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~--------~~~~---l~~-~~--------------- 62 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNCD--------AQPQ---IAQ-QF--------------- 62 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEecc--------CCHH---HHH-Hc---------------
Confidence 4789999999999999999999999999999764 888898875 1111 111 11
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhcC
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVIL 163 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (163)
++ .++| ++++++ +|+++.++.|..+.+++.+.|
T Consensus 63 --------------~i--~~~P---t~~~~~-~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 63 --------------GV--QALP---TVYLFA-AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred --------------CC--CCCC---EEEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence 11 4566 889996 899999999988888877654
No 67
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5e-13 Score=91.10 Aligned_cols=126 Identities=19% Similarity=0.255 Sum_probs=98.1
Q ss_pred cCCCcccceEEec-CCC--CeeeccccCCcEEEEEecc-CCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCC
Q 031257 7 QNPESIFDLSVKD-ARG--HEVDLSTYKGKVLLIVNVA-SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (163)
Q Consensus 7 ~~~~~~p~f~l~~-~~G--~~~~l~~~~gk~vlv~f~~-s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~ 82 (163)
....++|+|+-+. .|| +.++|++++||+++++|+. .+.-+|..+.-++...+.+|++.+.+++++|+|
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D-------- 76 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD-------- 76 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc--------
Confidence 3445668888665 365 5889999999999999994 677799999999999999999999999999997
Q ss_pred CHHHHHHHH---HhhcCC---ccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEe
Q 031257 83 SNDQIADFV---CTRFKS---EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRY 150 (163)
Q Consensus 83 ~~~~~~~~~---~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~ 150 (163)
+.....+|+ +++.++ ++|++ +|.+.+..+ -|+.+.+..+ ..+. .+||||++|.++...
T Consensus 77 S~fshlAW~ntprk~gGlg~~~iPll--sD~~~~Isr-dyGvL~~~~G----~~lR---glfIId~~gi~R~it 140 (196)
T KOG0852|consen 77 SVFSHLAWINTPRKQGGLGPLNIPLL--SDLNHEISR-DYGVLKEDEG----IALR---GLFIIDPDGILRQIT 140 (196)
T ss_pred chhhhhhHhcCchhhCCcCcccccee--eccchhhHH-hcCceecCCC----ccee---eeEEEccccceEEee
Confidence 444444444 345555 49999 888877665 4566666554 5666 899999999998853
No 68
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.46 E-value=3.6e-13 Score=87.71 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=66.1
Q ss_pred cCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCC
Q 031257 30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG 109 (163)
Q Consensus 30 ~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 109 (163)
.+|+++||.||++||+.|+...|.+.++.+++++.++.+..|+++ ....+ +. ++
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d--------~~~~l---~~-~~-------------- 75 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG--------HERRL---AR-KL-------------- 75 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc--------ccHHH---HH-Hc--------------
Confidence 367999999999999999999999999999998766888988875 11111 11 11
Q ss_pred CcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
|+ .++| +++++ ++|+++.+..|..+.+++.+.
T Consensus 76 ---------------~V--~~~P---t~~i~-~~g~~~~~~~G~~~~~~l~~~ 107 (111)
T cd02963 76 ---------------GA--HSVP---AIVGI-INGQVTFYHDSSFTKQHVVDF 107 (111)
T ss_pred ---------------CC--ccCC---EEEEE-ECCEEEEEecCCCCHHHHHHH
Confidence 22 5566 88888 589999988898887777654
No 69
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.46 E-value=3.5e-13 Score=86.45 Aligned_cols=44 Identities=9% Similarity=0.123 Sum_probs=38.9
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
.+++++|.||++||++|+...|.|.++..++++..+.++.+++|
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d 59 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD 59 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC
Confidence 57899999999999999999999999999998655788888763
No 70
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.45 E-value=5.4e-14 Score=91.52 Aligned_cols=106 Identities=18% Similarity=0.142 Sum_probs=64.5
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHH---HHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeec
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQ---LYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV 107 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~---~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 107 (163)
+||++||.||.+|||+|+...+.+.+ +...+++ ++.++.++++ +.......+.. ..+..++.. ..
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~--~~- 71 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNID-------DSRDESEAVLD-FDGQKNVRL--SN- 71 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESH-------SHHHHHHHHHS-HTCHSSCHH--HH-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecC-------Ccccccccccc-cccchhhhH--HH-
Confidence 57899999999999999988888875 3444433 4888888875 22323333332 222211111 00
Q ss_pred CCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhcC
Q 031257 108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVIL 163 (163)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (163)
..+... .++..+|+++++|++|+++++..|..+++++.+.|
T Consensus 72 -----~~l~~~----------~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 72 -----KELAQR----------YGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -----HHHHHH----------TT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred -----HHHHHH----------cCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 011111 34555559999999999999999999999988764
No 71
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.44 E-value=9.3e-13 Score=85.52 Aligned_cols=82 Identities=9% Similarity=-0.030 Sum_probs=62.7
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
.++++||.|||+||++|+...|.|.++..++++. +.++-|++| ...++. . ++
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD--------~~~~la---~-~~--------------- 64 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDID--------EVPDFN---K-MY--------------- 64 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECC--------CCHHHH---H-Hc---------------
Confidence 4679999999999999999999999999999865 788999886 222222 1 21
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhh
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLE 160 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~ 160 (163)
++ .++| +++++ ++|+.+.+..|..+...+.
T Consensus 65 --------------~V--~~iP---Tf~~f-k~G~~v~~~~G~~~~~~~~ 94 (114)
T cd02954 65 --------------EL--YDPP---TVMFF-FRNKHMKIDLGTGNNNKIN 94 (114)
T ss_pred --------------CC--CCCC---EEEEE-ECCEEEEEEcCCCCCceEE
Confidence 22 5677 76666 7899999998887766554
No 72
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.42 E-value=6.5e-13 Score=88.18 Aligned_cols=98 Identities=11% Similarity=0.149 Sum_probs=64.0
Q ss_pred CC-cEEEEEeccCCCCCChhhHHHHH---HHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeee
Q 031257 31 KG-KVLLIVNVASKCGMTNSNYIELS---QLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 106 (163)
Q Consensus 31 ~g-k~vlv~f~~s~C~~C~~~~~~l~---~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 106 (163)
.| |+++|.||++||++|+...+.+. ++.+.+++ ++.++.|+++. +. .... |+.. .
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~-------~~-~~~~---------~~~~---~ 70 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDG-------DK-EVTD---------FDGE---A 70 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccC-------Cc-eeec---------cCCC---C
Confidence 57 89999999999999999998775 56555554 58889998752 11 1111 1100 0
Q ss_pred cCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCC-CcEEEEeCCCCCcchhhhc
Q 031257 107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKN-GQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~-G~i~~~~~g~~~~~~~~~~ 162 (163)
.. ...+... .++ .++| +++++|++ |+++.+..|..+.+++.+.
T Consensus 71 ~~---~~~l~~~-----~~v--~~~P---t~~~~~~~gg~~~~~~~G~~~~~~~~~~ 114 (125)
T cd02951 71 LS---EKELARK-----YRV--RFTP---TVIFLDPEGGKEIARLPGYLPPDEFLAY 114 (125)
T ss_pred cc---HHHHHHH-----cCC--cccc---EEEEEcCCCCceeEEecCCCCHHHHHHH
Confidence 00 0111111 122 4555 99999999 8999999998887776654
No 73
>PHA02278 thioredoxin-like protein
Probab=99.40 E-value=1.8e-12 Score=83.20 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=62.2
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
+++++||+|||+||++|+...|.+.++.+++... +.++.|++|. ...+..+.+. ++
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~-~~~~~vdvd~-------~~~d~~~l~~-~~--------------- 68 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK-KPILTLNLDA-------EDVDREKAVK-LF--------------- 68 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC-ceEEEEECCc-------cccccHHHHH-HC---------------
Confidence 5789999999999999999999999998875433 6788888762 1100111111 21
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhh
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (163)
++ .++| +++++ ++|+.+.+..|..+.+++.+
T Consensus 69 --------------~I--~~iP---T~i~f-k~G~~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 69 --------------DI--MSTP---VLIGY-KDGQLVKKYEDQVTPMQLQE 99 (103)
T ss_pred --------------CC--cccc---EEEEE-ECCEEEEEEeCCCCHHHHHh
Confidence 11 5667 66555 68999999999888877765
No 74
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.2e-12 Score=87.82 Aligned_cols=84 Identities=18% Similarity=0.285 Sum_probs=65.3
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
.+.||||.|||+||.+|+...|.|.++..++.++ +.+.-|++|. ..+-.. ++
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~-------~~ela~-----~Y--------------- 111 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDE-------HPELAE-----DY--------------- 111 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcccc-------ccchHh-----hc---------------
Confidence 4679999999999999999999999999999776 9999998761 111111 11
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
++ ..+| +++++ ++|+.+.+..|..+.+.+++.
T Consensus 112 --------------~I--~avP---tvlvf-knGe~~d~~vG~~~~~~l~~~ 143 (150)
T KOG0910|consen 112 --------------EI--SAVP---TVLVF-KNGEKVDRFVGAVPKEQLRSL 143 (150)
T ss_pred --------------ce--eeee---EEEEE-ECCEEeeeecccCCHHHHHHH
Confidence 22 5677 66666 689999999998888777654
No 75
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.38 E-value=1.4e-12 Score=83.46 Aligned_cols=93 Identities=14% Similarity=0.271 Sum_probs=67.0
Q ss_pred CCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccc
Q 031257 21 RGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFP 100 (163)
Q Consensus 21 ~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (163)
+++.+...-.++++++|.||++||++|+...|.+.++.+++++. +.+..|+++. ... .++ ++
T Consensus 7 ~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~--------~~~---~~~-~~----- 68 (101)
T cd03003 7 DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGD--------DRM---LCR-SQ----- 68 (101)
T ss_pred CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCc--------cHH---HHH-Hc-----
Confidence 34433333335689999999999999999999999999999865 8899998851 111 222 21
Q ss_pred eeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhh
Q 031257 101 IFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161 (163)
Q Consensus 101 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (163)
++ .++| +++++ ++|+...++.|..+.+.+.+
T Consensus 69 ------------------------~v--~~~P---t~~~~-~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 69 ------------------------GV--NSYP---SLYVF-PSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred ------------------------CC--CccC---EEEEE-cCCCCcccCCCCCCHHHHHh
Confidence 11 4566 77777 78988888888888777654
No 76
>PRK09381 trxA thioredoxin; Provisional
Probab=99.38 E-value=2.4e-12 Score=83.43 Aligned_cols=84 Identities=24% Similarity=0.301 Sum_probs=64.2
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
.+++++|.||++||++|+...|.++++.+++++. +.++.++++. ...+ .+ ++
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~--------~~~~---~~-~~--------------- 71 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ--------NPGT---AP-KY--------------- 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCC--------ChhH---HH-hC---------------
Confidence 3679999999999999999999999999999874 8899998751 1111 11 10
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
++ ..+| +++++ ++|+++++..|..+.+++.+.
T Consensus 72 --------------~v--~~~P---t~~~~-~~G~~~~~~~G~~~~~~l~~~ 103 (109)
T PRK09381 72 --------------GI--RGIP---TLLLF-KNGEVAATKVGALSKGQLKEF 103 (109)
T ss_pred --------------CC--CcCC---EEEEE-eCCeEEEEecCCCCHHHHHHH
Confidence 11 4566 88888 699999999998887777654
No 77
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.37 E-value=7.4e-12 Score=82.81 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=66.8
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
.|+.++|+|+++|||+|+...|.|.++.++. ++.+..|++|.....+..+.+++.++.. +++....
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~~-~~~i~~~---------- 87 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFRS-RFGIPTS---------- 87 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHHH-HcCCccc----------
Confidence 4678999999999999999999999999873 3678888886321112223335566554 4333221
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCC-CCCcchhhhc
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP-TTSLLSLEVI 162 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g-~~~~~~~~~~ 162 (163)
+ .++| +++++ ++|+.+.+..| ..+.++|++.
T Consensus 88 ---------------i--~~~P---T~v~~-k~Gk~v~~~~G~~~~~~~l~~~ 119 (122)
T TIGR01295 88 ---------------F--MGTP---TFVHI-TDGKQVSVRCGSSTTAQELQDI 119 (122)
T ss_pred ---------------C--CCCC---EEEEE-eCCeEEEEEeCCCCCHHHHHHH
Confidence 1 4577 76666 78999999888 4457777764
No 78
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.36 E-value=6.4e-12 Score=80.67 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=64.9
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
.+++++|.||++||++|+...|.+.++.+++++. +.+..|+++ ...+ .+. ++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~~--------~~~~---~~~-~~--------------- 69 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK-VKVGSVDCQ--------KYES---LCQ-QA--------------- 69 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECC--------chHH---HHH-Hc---------------
Confidence 4579999999999999999999999999998654 888999875 1121 222 21
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCC-cchhhhcC
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTS-LLSLEVIL 163 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~-~~~~~~~l 163 (163)
++ .++| +++++.++|+...++.|..+ .+++.+.|
T Consensus 70 --------------~i--~~~P---t~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 70 --------------NI--RAYP---TIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred --------------CC--Cccc---EEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 12 4566 88899776688889999876 77777654
No 79
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.33 E-value=5.1e-12 Score=80.70 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=60.4
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
+|+ ++|.||++||++|+...|.+.++.+.++..++.+..++++. . .. .+. ++
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-------~-~~---~~~-~~--------------- 67 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-------E-PG---LSG-RF--------------- 67 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-------C-Hh---HHH-Hc---------------
Confidence 565 68999999999999999999999998776668888888751 1 11 111 11
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
++ .++| +++++ ++|++ .++.|..+.+++.+.
T Consensus 68 --------------~i--~~~P---t~~~~-~~g~~-~~~~G~~~~~~l~~~ 98 (101)
T cd02994 68 --------------FV--TALP---TIYHA-KDGVF-RRYQGPRDKEDLISF 98 (101)
T ss_pred --------------CC--cccC---EEEEe-CCCCE-EEecCCCCHHHHHHH
Confidence 11 4566 87776 78986 678888887777654
No 80
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.31 E-value=1.1e-11 Score=80.42 Aligned_cols=88 Identities=15% Similarity=0.250 Sum_probs=64.5
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
+|++++|.||++||++|+...|.+.++.+++++.++.+..|+++. +... ++.+.+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~-------~~~~---~~~~~~--------------- 74 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG-------EQRE---FAKEEL--------------- 74 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc-------cchh---hHHhhc---------------
Confidence 578999999999999999999999999999987679999998751 0111 111110
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCC-CCcchhhhc
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT-TSLLSLEVI 162 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~-~~~~~~~~~ 162 (163)
++ .++| ++++++++++....+.|. .+.+.+.+.
T Consensus 75 --------------~v--~~~P---ti~~f~~~~~~~~~y~g~~~~~~~l~~f 108 (109)
T cd02993 75 --------------QL--KSFP---TILFFPKNSRQPIKYPSEQRDVDSLLMF 108 (109)
T ss_pred --------------CC--CcCC---EEEEEcCCCCCceeccCCCCCHHHHHhh
Confidence 11 4566 889998888777778874 466666543
No 81
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.31 E-value=5.4e-12 Score=80.55 Aligned_cols=84 Identities=23% Similarity=0.367 Sum_probs=62.8
Q ss_pred cEEEEEeccCCCCCChhhHHHHHHHHHHhcC--CCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKD--QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 33 k~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~--~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
++++|.||++||++|+...|.++++++++++ ..+.++.++++ .... .++ ++
T Consensus 17 ~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~--------~~~~---~~~-~~--------------- 69 (102)
T cd03005 17 GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT--------QHRE---LCS-EF--------------- 69 (102)
T ss_pred CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC--------CChh---hHh-hc---------------
Confidence 3599999999999999999999999999976 35888888764 1111 111 10
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhcC
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVIL 163 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (163)
++ .++| +++++ ++|+.+.++.|..+.+++.+.|
T Consensus 70 --------------~v--~~~P---t~~~~-~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 70 --------------QV--RGYP---TLLLF-KDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred --------------CC--CcCC---EEEEE-eCCCeeeEeeCCCCHHHHHhhC
Confidence 11 4566 88888 6888888899988888877654
No 82
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.30 E-value=1.7e-11 Score=77.80 Aligned_cols=85 Identities=11% Similarity=0.237 Sum_probs=64.6
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
.+++++|.||++||+.|+...+.+.++.+++.+ ++.++.++.+ ...++ .. ++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d--------~~~~l---~~-~~--------------- 63 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDID--------EDQEI---AE-AA--------------- 63 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECC--------CCHHH---HH-HC---------------
Confidence 468999999999999999999999999999876 4888888864 11111 11 11
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhcC
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVIL 163 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (163)
++ .++| ++++++ +|+++.+..|..+.+++.+.|
T Consensus 64 --------------~v--~~vP---t~~i~~-~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 64 --------------GI--MGTP---TVQFFK-DKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred --------------CC--eecc---EEEEEE-CCeEEEEEeCCccHHHHHHhh
Confidence 11 4556 888994 799999999988888877653
No 83
>PRK10996 thioredoxin 2; Provisional
Probab=99.29 E-value=7.3e-12 Score=84.73 Aligned_cols=84 Identities=18% Similarity=0.233 Sum_probs=63.8
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
++++++|.||++||++|+...+.|.++.+++.+. +.++.++.+ ...+ .+. ++
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~--------~~~~---l~~-~~--------------- 102 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK-VRFVKVNTE--------AERE---LSA-RF--------------- 102 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEeCC--------CCHH---HHH-hc---------------
Confidence 4789999999999999999999999999988764 888888764 1111 111 11
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
++ .++| +++++ ++|+++.+..|..+.+++.+.
T Consensus 103 --------------~V--~~~P---tlii~-~~G~~v~~~~G~~~~e~l~~~ 134 (139)
T PRK10996 103 --------------RI--RSIP---TIMIF-KNGQVVDMLNGAVPKAPFDSW 134 (139)
T ss_pred --------------CC--CccC---EEEEE-ECCEEEEEEcCCCCHHHHHHH
Confidence 22 5566 77766 589999999998887777654
No 84
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.29 E-value=1.6e-11 Score=80.06 Aligned_cols=84 Identities=15% Similarity=0.067 Sum_probs=62.4
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
.++++||.|||+||++|+...|.+.++.+++++. +.++.|+++ ...++ +.++++
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d--------~~~~l---~~~~~~-------------- 81 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCW--------WPQGK---CRKQKH-------------- 81 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECC--------CChHH---HHHhcC--------------
Confidence 4579999999999999999999999999999875 888999875 12222 111211
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhh
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (163)
+ .++| ++.++ ++|+...++.|..+.+.+..
T Consensus 82 ---------------I--~~~P---Tl~lf-~~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 82 ---------------F--FYFP---VIHLY-YRSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred ---------------C--cccC---EEEEE-ECCccceEEeCCCCHHHHHh
Confidence 1 4556 76666 68888778888888777654
No 85
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.27 E-value=1.6e-11 Score=79.33 Aligned_cols=87 Identities=13% Similarity=0.215 Sum_probs=62.6
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
.+++++|.||++||++|+...|.+.++.+++++. +.++.++++. + ...+.+. ++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~v~~~~------~---~~~~~~~-~~--------------- 70 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDE------D---KNKPLCG-KY--------------- 70 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC-ceEEEEecCc------c---ccHHHHH-Hc---------------
Confidence 4678999999999999999999999999998764 8889998751 1 1111111 11
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCC----cEEEEeCCCCCcchhhhc
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNG----QVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G----~i~~~~~g~~~~~~~~~~ 162 (163)
++ .++| +++++++++ ++...+.|..+.+.+.+.
T Consensus 71 --------------~i--~~~P---t~~~~~~~~~~~~~~~~~~~G~~~~~~l~~f 107 (109)
T cd03002 71 --------------GV--QGFP---TLKVFRPPKKASKHAVEDYNGERSAKAIVDF 107 (109)
T ss_pred --------------CC--CcCC---EEEEEeCCCcccccccccccCccCHHHHHHH
Confidence 22 4556 999998776 355667787777776554
No 86
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.24 E-value=2.1e-11 Score=78.00 Aligned_cols=88 Identities=16% Similarity=0.254 Sum_probs=61.8
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCC-CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG 109 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~-~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 109 (163)
++++++|.||++||++|+...+.++++.+.+++. .+.++.++++. + +...... ++
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~------~---~~~~~~~-~~-------------- 71 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK------P---EHDALKE-EY-------------- 71 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC------C---ccHHHHH-hC--------------
Confidence 4679999999999999999999999999998743 36677777641 1 0111111 11
Q ss_pred CcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhcC
Q 031257 110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVIL 163 (163)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (163)
|+ .++| +++++ ++|+++.++.|..+.+.+.+.|
T Consensus 72 ---------------~i--~~~P---t~~~~-~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 72 ---------------NV--KGFP---TFKYF-ENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred ---------------CC--cccc---EEEEE-eCCCeeEEeCCCCCHHHHHhhC
Confidence 22 4555 65555 6899888999988888876654
No 87
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.1e-11 Score=76.67 Aligned_cols=81 Identities=20% Similarity=0.329 Sum_probs=61.5
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
.+|.++|+|+|+||++|+...|.+.++..+|++ +.++.+++| . +...+. +.
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvd--------e---~~~~~~-~~--------------- 70 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVD--------E---LEEVAK-EF--------------- 70 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecc--------c---CHhHHH-hc---------------
Confidence 368999999999999999999999999999998 899999986 1 333333 21
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhh
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (163)
++ ..+| |..++ ++|+.+.+..|.... ++++
T Consensus 71 --------------~V--~~~P---Tf~f~-k~g~~~~~~vGa~~~-~l~~ 100 (106)
T KOG0907|consen 71 --------------NV--KAMP---TFVFY-KGGEEVDEVVGANKA-ELEK 100 (106)
T ss_pred --------------Cc--eEee---EEEEE-ECCEEEEEEecCCHH-HHHH
Confidence 11 4566 66666 889999998885543 4443
No 88
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.22 E-value=3.7e-11 Score=77.24 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=37.0
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCC--eEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG--LEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~--~~ii~is~d 74 (163)
++++++|.||++||++|+...|.+.++++++++.+ +.+..++++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~ 59 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT 59 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc
Confidence 45799999999999999999999999999997543 666666653
No 89
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.21 E-value=2.4e-11 Score=79.84 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=36.3
Q ss_pred ccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 27 l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
.+..++|++||.||++||++|+...+.+.+....... ...++.|.+|
T Consensus 14 ~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd 60 (117)
T cd02959 14 EAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLE 60 (117)
T ss_pred HHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEec
Confidence 3445689999999999999999999999987665432 3456666665
No 90
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.21 E-value=5.2e-11 Score=75.78 Aligned_cols=84 Identities=18% Similarity=0.238 Sum_probs=61.6
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCC-CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG 109 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~-~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 109 (163)
++++++|.||++||+.|+...+.+.++.+.++.. ++.++.++++ .. ..... ++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~--------~~---~~~~~-~~-------------- 65 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT--------AE---KDLAS-RF-------------- 65 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc--------ch---HHHHH-hC--------------
Confidence 6889999999999999999999999999998875 3777777654 11 11111 11
Q ss_pred CcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhh
Q 031257 110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161 (163)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (163)
++ .++| +++++++++. ...+.|..+.+++.+
T Consensus 66 ---------------~i--~~~P---~~~~~~~~~~-~~~~~g~~~~~~l~~ 96 (102)
T TIGR01126 66 ---------------GV--SGFP---TIKFFPKGKK-PVDYEGGRDLEAIVE 96 (102)
T ss_pred ---------------CC--CcCC---EEEEecCCCc-ceeecCCCCHHHHHH
Confidence 11 4455 9999998877 667888877777654
No 91
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=6e-11 Score=87.75 Aligned_cols=84 Identities=21% Similarity=0.385 Sum_probs=66.7
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
+.+||||.||++||++|+..+|.|.++..+++++ +.+.-|++| ....+.. .
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D--------~~p~vAa----q---------------- 92 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCD--------AEPMVAA----Q---------------- 92 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCC--------cchhHHH----H----------------
Confidence 4469999999999999999999999999999987 999999986 2222221 1
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
| |+ .+|| ++|++ ++|+-+..+.|..+.+.+++.
T Consensus 93 -----f--------gi--qsIP---tV~af-~dGqpVdgF~G~qPesqlr~~ 125 (304)
T COG3118 93 -----F--------GV--QSIP---TVYAF-KDGQPVDGFQGAQPESQLRQF 125 (304)
T ss_pred -----h--------Cc--CcCC---eEEEe-eCCcCccccCCCCcHHHHHHH
Confidence 0 33 6777 87777 899999998898877777654
No 92
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.19 E-value=5.3e-11 Score=76.96 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=60.8
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCC-----CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeee
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-----GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKI 105 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~-----~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (163)
.+++++|.||++||++|+...|.+.++++++++. .+.+..|++| ...+ .++ ++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d--------~~~~---l~~-~~---------- 74 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD--------KESD---IAD-RY---------- 74 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC--------CCHH---HHH-hC----------
Confidence 4579999999999999999999999999876431 3777888875 1111 122 21
Q ss_pred ecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCc-EEEEeCCCCCcchhhhcC
Q 031257 106 DVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQ-VVDRYYPTTSLLSLEVIL 163 (163)
Q Consensus 106 d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~-i~~~~~g~~~~~~~~~~l 163 (163)
|+ .++| +++++ ++|+ +...+.|..+.+.|.+.|
T Consensus 75 -------------------~v--~~~P---tl~~~-~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 75 -------------------RI--NKYP---TLKLF-RNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred -------------------CC--CcCC---EEEEE-eCCcCcceecCCCCCHHHHHhhC
Confidence 22 4566 87777 6788 446677877777776653
No 93
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.18 E-value=1.7e-10 Score=79.01 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=40.4
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+++++||.||++||++|+...|.+.++.+++++.++.++.|++|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd 89 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIG 89 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECC
Confidence 45799999999999999999999999999998767999999986
No 94
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.18 E-value=1.3e-10 Score=78.37 Aligned_cols=43 Identities=9% Similarity=-0.060 Sum_probs=39.2
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
.++++||.||++||++|+...|.|.++.+++++. +.|+-|++|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVD 64 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDIT 64 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECC
Confidence 4679999999999999999999999999999875 888999886
No 95
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.18 E-value=1.2e-10 Score=73.77 Aligned_cols=83 Identities=24% Similarity=0.372 Sum_probs=62.3
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCCc
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEH 111 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 111 (163)
+++++|.||++||+.|+...+.++++.+++++. +.++.++++ .... .+. ++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~~--------~~~~---~~~-~~---------------- 64 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK-VKFVKLNVD--------ENPD---IAA-KY---------------- 64 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC-eEEEEEECC--------CCHH---HHH-Hc----------------
Confidence 469999999999999999999999999888754 899999875 1111 111 11
Q ss_pred chhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 112 ASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
|+ ..+| +++++ ++|+++.+..|..+.+++.+.
T Consensus 65 -------------~v--~~~P---~~~~~-~~g~~~~~~~g~~~~~~l~~~ 96 (101)
T TIGR01068 65 -------------GI--RSIP---TLLLF-KNGKEVDRSVGALPKAALKQL 96 (101)
T ss_pred -------------CC--CcCC---EEEEE-eCCcEeeeecCCCCHHHHHHH
Confidence 11 4556 88888 689998888888877776654
No 96
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.17 E-value=2.2e-10 Score=72.45 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=35.9
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEec
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
+++++|.||++||+.|+...+.|.++.+++. ..+.++.++.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-~~i~~~~vd~ 54 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-PSVLFLSIEA 54 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-CceEEEEEcc
Confidence 6899999999999999999999999999873 3588888765
No 97
>PTZ00051 thioredoxin; Provisional
Probab=99.16 E-value=2e-10 Score=72.83 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=36.6
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
.+++++|.||++||++|+...+.+.++.+++.+ +.++.++.+
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~ 58 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVD 58 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECc
Confidence 468999999999999999999999999998754 788888753
No 98
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.15 E-value=1.4e-10 Score=73.87 Aligned_cols=83 Identities=22% Similarity=0.371 Sum_probs=64.8
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCCc
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEH 111 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 111 (163)
++++||.|+++||+.|+...|.+.++.+++++ ++.++.|+++ .. ...+. ++
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~-------~~----~~l~~-~~---------------- 67 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCD-------EN----KELCK-KY---------------- 67 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETT-------TS----HHHHH-HT----------------
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhh-------cc----chhhh-cc----------------
Confidence 68999999999999999999999999999987 6999999874 12 22222 21
Q ss_pred chhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 112 ASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
++ .++| +++++ ++|+...++.|..+.+.|.+.
T Consensus 68 -------------~v--~~~P---t~~~~-~~g~~~~~~~g~~~~~~l~~~ 99 (103)
T PF00085_consen 68 -------------GV--KSVP---TIIFF-KNGKEVKRYNGPRNAESLIEF 99 (103)
T ss_dssp -------------TC--SSSS---EEEEE-ETTEEEEEEESSSSHHHHHHH
T ss_pred -------------CC--CCCC---EEEEE-ECCcEEEEEECCCCHHHHHHH
Confidence 11 5566 77777 578888899998888887764
No 99
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.14 E-value=1.8e-10 Score=73.65 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=63.9
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcC-CCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKD-QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~-~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
+++++|.||++||++|+...+.+.++.++++. .++.++.++++. . ....++ ++
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-------~---~~~~~~-~~--------------- 71 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE-------A---NKDLAK-KY--------------- 71 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC-------c---chhhHH-hC---------------
Confidence 56999999999999999999999999999873 358888887641 0 111121 11
Q ss_pred cchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhcC
Q 031257 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVIL 163 (163)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (163)
++ .++| ++++++++|+....+.|..+.+++.+.|
T Consensus 72 --------------~i--~~~P---~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 72 --------------GV--SGFP---TLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred --------------CC--CCcC---EEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 11 4566 9999988877777788888877776543
No 100
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.11 E-value=2.2e-10 Score=93.72 Aligned_cols=89 Identities=13% Similarity=0.123 Sum_probs=62.8
Q ss_pred cCCcEEEEEeccCCCCCChhhHHHH---HHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeee
Q 031257 30 YKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 106 (163)
Q Consensus 30 ~~gk~vlv~f~~s~C~~C~~~~~~l---~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 106 (163)
.+||+++|+||++||++|+...+.+ .++.++++ ++.++.+++++ +.++..+..+ ++
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-------~~~~~~~l~~-~~----------- 530 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-------NNAEDVALLK-HY----------- 530 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-------CChhhHHHHH-Hc-----------
Confidence 3589999999999999999876654 56666665 37888888752 2222233332 21
Q ss_pred cCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEE--EEeCCCCCcchhhhc
Q 031257 107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVV--DRYYPTTSLLSLEVI 162 (163)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~--~~~~g~~~~~~~~~~ 162 (163)
++ .++| +++++|++|+++ .+..|..+++++.+.
T Consensus 531 ------------------~v--~g~P---t~~~~~~~G~~i~~~r~~G~~~~~~f~~~ 565 (571)
T PRK00293 531 ------------------NV--LGLP---TILFFDAQGQEIPDARVTGFMDAAAFAAH 565 (571)
T ss_pred ------------------CC--CCCC---EEEEECCCCCCcccccccCCCCHHHHHHH
Confidence 22 5566 999999999984 678888888777654
No 101
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.10 E-value=3.4e-10 Score=71.40 Aligned_cols=87 Identities=20% Similarity=0.270 Sum_probs=64.2
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhc-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYK-DQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG 109 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~-~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 109 (163)
++++++|.||++||+.|+...+.+.++.+.++ ..++.++.++++ . -...+. ++
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------~---~~~~~~-~~-------------- 67 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT--------A---NNDLCS-EY-------------- 67 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc--------c---hHHHHH-hC--------------
Confidence 45699999999999999999999999999985 345888888764 1 111111 11
Q ss_pred CcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhcC
Q 031257 110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVIL 163 (163)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (163)
++ .++| ++++++++|+...++.|..+.+++.+.+
T Consensus 68 ---------------~i--~~~P---t~~~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 68 ---------------GV--RGYP---TIKLFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred ---------------CC--CCCC---EEEEEcCCCcccccCCCCcCHHHHHhhC
Confidence 11 3455 9999998878888888888877776643
No 102
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.10 E-value=1e-09 Score=70.92 Aligned_cols=43 Identities=14% Similarity=-0.010 Sum_probs=39.2
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
.+|++||.|+++||++|+..-|.|.++.+++++. +.++.|++|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVD 55 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVD 55 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecc
Confidence 5799999999999999999999999999999765 888888875
No 103
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.09 E-value=9.2e-10 Score=71.10 Aligned_cols=83 Identities=13% Similarity=0.171 Sum_probs=64.0
Q ss_pred CCcEEEEEeccCC--CCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecC
Q 031257 31 KGKVLLIVNVASK--CGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN 108 (163)
Q Consensus 31 ~gk~vlv~f~~s~--C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 108 (163)
.|.++||+||++| ||.|....|.|.++.++++++ +.++-++++ +.. ++.. ++
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid-------~~~-~la~----~f------------- 79 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRA-------DEQ-ALAA----RF------------- 79 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECC-------CCH-HHHH----Hc-------------
Confidence 5679999999997 999999999999999999876 888888875 222 2221 21
Q ss_pred CCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhh
Q 031257 109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161 (163)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (163)
++ .++| |++++ ++|+++.+..|..+.+++.+
T Consensus 80 ----------------~V--~sIP---Tli~f-kdGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 80 ----------------GV--LRTP---ALLFF-RDGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred ----------------CC--CcCC---EEEEE-ECCEEEEEEeCccCHHHHhh
Confidence 22 6677 76666 68999999999888777653
No 104
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.09 E-value=3.7e-10 Score=81.95 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=60.2
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCCc
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEH 111 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 111 (163)
+++++|.||++||++|+...|.+.++.+++++. +.+..++++ ... +.+. ++
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~--------~~~---~l~~-~~---------------- 102 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDAT--------RAL---NLAK-RF---------------- 102 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCc--------ccH---HHHH-Hc----------------
Confidence 478999999999999999999999999999864 777777653 111 1111 21
Q ss_pred chhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhh
Q 031257 112 ASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161 (163)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (163)
++ .++| ++++++ +|+++....|..+.+++.+
T Consensus 103 -------------~I--~~~P---Tl~~f~-~G~~v~~~~G~~s~e~L~~ 133 (224)
T PTZ00443 103 -------------AI--KGYP---TLLLFD-KGKMYQYEGGDRSTEKLAA 133 (224)
T ss_pred -------------CC--CcCC---EEEEEE-CCEEEEeeCCCCCHHHHHH
Confidence 22 4566 888887 7888877777777776654
No 105
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.08 E-value=4.8e-10 Score=71.60 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=38.3
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcC-CCeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD-QGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~-~~~~ii~is~d 74 (163)
.+++++|.||++||++|+...+.+.++.+.+++ ..+.+..++++
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 358999999999999999999999999999987 35788888763
No 106
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.03 E-value=2.9e-09 Score=70.49 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=31.6
Q ss_pred cccCCcEEEEEeccCCCCCChhhHHH-HH--HHHHHhcCCCeEEEEEecC
Q 031257 28 STYKGKVLLIVNVASKCGMTNSNYIE-LS--QLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 28 ~~~~gk~vlv~f~~s~C~~C~~~~~~-l~--~~~~~~~~~~~~ii~is~d 74 (163)
+.-++|+++|+|+++||++|+..-+. +. ++.+.+.+ ++.+|-++.+
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~ 59 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDRE 59 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCC
Confidence 33468999999999999999987652 22 34444433 3666766653
No 107
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.02 E-value=3.9e-09 Score=68.81 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=36.4
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+++++|.||++||++|+...|.+.++.+++.+ +.++-|+++
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~ 64 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAE 64 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEch
Confidence 47999999999999999999999999999864 788888763
No 108
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.01 E-value=1.6e-09 Score=69.15 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=37.2
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+++++|.||++||++|+...+.+.++.+++++. +.++.++++
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~~ 59 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDAD 59 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEECc
Confidence 467999999999999999999999999998764 888888764
No 109
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.98 E-value=6.8e-09 Score=67.76 Aligned_cols=42 Identities=7% Similarity=-0.069 Sum_probs=37.6
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
++++++|.||++||++|+...|.|.++.+++++ +.++-|+++
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~ 62 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAE 62 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcc
Confidence 357999999999999999999999999998864 889999875
No 110
>PTZ00102 disulphide isomerase; Provisional
Probab=98.95 E-value=1.2e-09 Score=87.58 Aligned_cols=100 Identities=16% Similarity=0.184 Sum_probs=68.8
Q ss_pred EecCCCCeeecc-ccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCC-CeEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 031257 17 VKDARGHEVDLS-TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPCNQFGEEEPGSNDQIADFVCTR 94 (163)
Q Consensus 17 l~~~~G~~~~l~-~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~-~~~ii~is~d~~~~~~~~~~~~~~~~~~~~ 94 (163)
+..+.|+.+... .-.|++++|.||++||++|+...|.+.++.+.+++. .+.+..++++. .+.. +. .
T Consensus 359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~--------~~~~---~~-~ 426 (477)
T PTZ00102 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA--------NETP---LE-E 426 (477)
T ss_pred eEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC--------Cccc---hh-c
Confidence 444455555432 225789999999999999999999999999998764 46677776541 0000 00 0
Q ss_pred cCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 95 FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 95 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
+ ++ .++| +++++++++++..++.|..+.+.+.+.
T Consensus 427 ---------------------~--------~v--~~~P---t~~~~~~~~~~~~~~~G~~~~~~l~~~ 460 (477)
T PTZ00102 427 ---------------------F--------SW--SAFP---TILFVKAGERTPIPYEGERTVEGFKEF 460 (477)
T ss_pred ---------------------C--------CC--cccC---eEEEEECCCcceeEecCcCCHHHHHHH
Confidence 0 11 4566 999999888876678888887777653
No 111
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.94 E-value=3.5e-09 Score=69.51 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=39.1
Q ss_pred CCcEEEEEecc-------CCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVA-------SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~-------s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+|++++|.||| +||++|+...|.|.++..++++. +.++.|+++
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~-v~fv~Vdvd 69 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED-CVFIYCDVG 69 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC-CEEEEEEcC
Confidence 57899999999 99999999999999999998743 899999886
No 112
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.94 E-value=4.7e-09 Score=69.05 Aligned_cols=82 Identities=13% Similarity=0.231 Sum_probs=59.0
Q ss_pred cEEEEEeccCCCCC--Ch--hhHHHHHHHHHHh-cCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeec
Q 031257 33 KVLLIVNVASKCGM--TN--SNYIELSQLYDKY-KDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV 107 (163)
Q Consensus 33 k~vlv~f~~s~C~~--C~--~~~~~l~~~~~~~-~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 107 (163)
.++|++||++||++ |+ ...|.|.++..++ ++.++.++.|++| ...++. + ++
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d--------~~~~La---~-~~------------ 83 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSK--------KDAKVA---K-KL------------ 83 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCC--------CCHHHH---H-Hc------------
Confidence 58999999999987 99 6678888888877 2335999999986 122222 1 21
Q ss_pred CCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
|+ .++| |++|+ ++|+++. +.|..+.+.+.+.
T Consensus 84 -----------------~I--~~iP---Tl~lf-k~G~~v~-~~G~~~~~~l~~~ 114 (120)
T cd03065 84 -----------------GL--DEED---SIYVF-KDDEVIE-YDGEFAADTLVEF 114 (120)
T ss_pred -----------------CC--cccc---EEEEE-ECCEEEE-eeCCCCHHHHHHH
Confidence 22 5677 77777 6899887 8888887777654
No 113
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.94 E-value=7e-09 Score=64.09 Aligned_cols=83 Identities=22% Similarity=0.304 Sum_probs=60.4
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCCc
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEH 111 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 111 (163)
+++++|.||++||+.|....+.++++.++ ..++.++.++++ .... .+. ++
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~--------~~~~---~~~-~~---------------- 59 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVD--------ENPE---LAE-EY---------------- 59 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECC--------CChh---HHH-hc----------------
Confidence 37899999999999999999999999988 345899999875 1111 111 11
Q ss_pred chhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhcC
Q 031257 112 ASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVIL 163 (163)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (163)
++ .++| +++++ ++|+++..+.|..+.+.+.+.|
T Consensus 60 -------------~v--~~~P---~~~~~-~~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 60 -------------GV--RSIP---TFLFF-KNGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred -------------Cc--cccc---EEEEE-ECCEEEEEEecCCCHHHHHHHh
Confidence 11 4556 77777 5788888888887777776653
No 114
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.91 E-value=4.3e-09 Score=76.00 Aligned_cols=138 Identities=14% Similarity=0.157 Sum_probs=93.2
Q ss_pred ccCCCcccceEEecCCCCe-eecccc-C-CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCC----
Q 031257 6 IQNPESIFDLSVKDARGHE-VDLSTY-K-GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGE---- 78 (163)
Q Consensus 6 ~~~~~~~p~f~l~~~~G~~-~~l~~~-~-gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~---- 78 (163)
...|..|||..+...+|+. .++.|+ + ++|+||+|-+-.||+=+..+..++++.++|++. +.++.|=+...-+
T Consensus 73 a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsDgW 151 (237)
T PF00837_consen 73 AKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSDGW 151 (237)
T ss_pred eeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCCCc
Confidence 4579999999999999998 999998 4 489999999888999999999999999999985 5555553321100
Q ss_pred ---------CCCCCHHH---HHHHHHhhcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcE
Q 031257 79 ---------EEPGSNDQ---IADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQV 146 (163)
Q Consensus 79 ---------~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i 146 (163)
+...+.++ +++.+. +....+|++ .|.-.-.+...|+ +.| .++|||. +|+|
T Consensus 152 ~~~~~~~~i~qh~sledR~~aA~~l~-~~~~~~pi~--vD~mdN~~~~~Yg------------A~P--eRlyIi~-~gkv 213 (237)
T PF00837_consen 152 AFGNNPYEIPQHRSLEDRLRAAKLLK-EEFPQCPIV--VDTMDNNFNKAYG------------ALP--ERLYIIQ-DGKV 213 (237)
T ss_pred cCCCCceeecCCCCHHHHHHHHHHHH-hhCCCCCEE--EEccCCHHHHHhC------------CCc--ceEEEEE-CCEE
Confidence 01122222 344444 445788988 6654433333332 333 2578885 8999
Q ss_pred EEEeC-CCC--Ccchhhhc
Q 031257 147 VDRYY-PTT--SLLSLEVI 162 (163)
Q Consensus 147 ~~~~~-g~~--~~~~~~~~ 162 (163)
+|+.. |.. .++++++.
T Consensus 214 ~Y~Gg~GP~~y~~~e~r~~ 232 (237)
T PF00837_consen 214 VYKGGPGPFGYSPEELREW 232 (237)
T ss_pred EEeCCCCCCcCCHHHHHHH
Confidence 99843 222 45666554
No 115
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.90 E-value=5.1e-09 Score=74.45 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=36.3
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEec
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
+++|||.||++||++|+...+.|.+++.+|.. +.|+-|++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~a 141 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIIS 141 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEh
Confidence 35999999999999999999999999999964 88998875
No 116
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.87 E-value=6.7e-09 Score=75.10 Aligned_cols=99 Identities=24% Similarity=0.188 Sum_probs=70.0
Q ss_pred ccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeee
Q 031257 27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 106 (163)
Q Consensus 27 l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 106 (163)
+.++.+++-|++|+.+.|++|..+.|.|+.+.+++ |+.++.||+|. .....||.. ..
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG------------------~~~~~fp~~--~~ 171 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDG------------------RPIPSFPNP--RP 171 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCC------------------CCCcCCCCC--CC
Confidence 45566789999999999999999999999999887 69999999872 111133332 11
Q ss_pred cCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCC-cEEEEeCCCCCcchhhhcC
Q 031257 107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNG-QVVDRYYPTTSLLSLEVIL 163 (163)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G-~i~~~~~g~~~~~~~~~~l 163 (163)
+ ...... .++..+|++|||++++ ++.-...|..+.++|.+.|
T Consensus 172 -~----~g~~~~----------l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 172 -D----PGQAKR----------LGVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred -C----HHHHHH----------cCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 1 111111 2334445999999988 6666688999988887654
No 117
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.87 E-value=1.2e-08 Score=71.53 Aligned_cols=40 Identities=8% Similarity=0.011 Sum_probs=36.4
Q ss_pred cEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 33 k~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+++||+||++||++|+...|.|.+++++++. +.++-|+++
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d 123 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRAS 123 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEecc
Confidence 4999999999999999999999999999864 889999864
No 118
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.84 E-value=2.1e-08 Score=61.24 Aligned_cols=39 Identities=8% Similarity=0.093 Sum_probs=33.8
Q ss_pred EEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 35 LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 35 vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
.|..||++||++|+...+.+.+++++++.. +.++.|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~ 40 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVM 40 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCc
Confidence 467899999999999999999999998754 888888764
No 119
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.82 E-value=1.3e-08 Score=80.97 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=40.7
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+++++||.||++||++|+...|.+.++.+++++.++.++.|++|
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD 413 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRAD 413 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence 57899999999999999999999999999998777899999875
No 120
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.81 E-value=3.4e-08 Score=64.53 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=36.3
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCC--CeEEEEEecC
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCN 74 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~--~~~ii~is~d 74 (163)
+++++|.||++||++|+...+.+.++.+++++. .+.+..++++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~ 63 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence 479999999999999999999999999988653 3777777653
No 121
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.79 E-value=1.4e-08 Score=74.93 Aligned_cols=98 Identities=12% Similarity=0.141 Sum_probs=69.1
Q ss_pred ccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeee
Q 031257 27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 106 (163)
Q Consensus 27 l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 106 (163)
+.++.+++-|++|+.+.|++|..+.|.|+.+.+++ |+.++.||+|. ...-.||.. ..
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG------------------~~~p~fp~~--~~ 201 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDG------------------TLIPGLPNS--RS 201 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCC------------------CCCCCCCCc--cC
Confidence 45556789999999999999999999999999886 59999999972 111224433 11
Q ss_pred cCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCC-CcEEEEeCCCCCcchhhhc
Q 031257 107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKN-GQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~-G~i~~~~~g~~~~~~~~~~ 162 (163)
..+. ... .++..+|++||++++ +++.-...|..+.++|.+.
T Consensus 202 d~gq-----a~~----------l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~R 243 (256)
T TIGR02739 202 DSGQ-----AQH----------LGVKYFPALYLVNPKSQKMSPLAYGFISQDELKER 243 (256)
T ss_pred ChHH-----HHh----------cCCccCceEEEEECCCCcEEEEeeccCCHHHHHHH
Confidence 1110 011 233445599999998 6666668899998888654
No 122
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.79 E-value=3.4e-08 Score=64.46 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=34.8
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
++.++|+||++||++|+..-+.+.++..++ + .+.+..++.|
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d 62 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFD 62 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCC
Confidence 457889999999999999999999998886 3 3888888875
No 123
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.76 E-value=8.1e-08 Score=62.65 Aligned_cols=90 Identities=12% Similarity=0.106 Sum_probs=58.4
Q ss_pred cccCCcEEEEEeccCCCCCChhhHHH-HH--HHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeee
Q 031257 28 STYKGKVLLIVNVASKCGMTNSNYIE-LS--QLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEK 104 (163)
Q Consensus 28 ~~~~gk~vlv~f~~s~C~~C~~~~~~-l~--~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (163)
+.-++|+++|+|+++||++|...... ++ ++.+.+++ .+.++.++++ + .+..++.. .+
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~--------~-~e~~~~~~-~~--------- 72 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDID--------S-SEGQRFLQ-SY--------- 72 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCC--------C-ccHHHHHH-Hh---------
Confidence 33468999999999999999886432 21 23333333 2555555542 1 22233332 11
Q ss_pred eecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECC-CCcEEEEeCCCCCcchhhhc
Q 031257 105 IDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDK-NGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 105 ~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~-~G~i~~~~~g~~~~~~~~~~ 162 (163)
+. .++| ++++||+ +|+++.+..|..+++++.+.
T Consensus 73 --------------------~~--~~~P---~~~~i~~~~g~~l~~~~G~~~~~~f~~~ 106 (114)
T cd02958 73 --------------------KV--DKYP---HIAIIDPRTGEVLKVWSGNITPEDLLSQ 106 (114)
T ss_pred --------------------Cc--cCCC---eEEEEeCccCcEeEEEcCCCCHHHHHHH
Confidence 11 4566 9999999 89999999999999887654
No 124
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.74 E-value=2.4e-08 Score=73.24 Aligned_cols=98 Identities=14% Similarity=0.129 Sum_probs=68.9
Q ss_pred ccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeee
Q 031257 27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 106 (163)
Q Consensus 27 l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 106 (163)
+.++.+++-|++|+.+.||+|..+.|.|+.+.+++ |+.++.||+|. ...-.||.. ..
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG------------------~~~p~fp~~--~~ 194 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDG------------------VINPLLPDS--RT 194 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCC------------------CCCCCCCCC--cc
Confidence 45556789999999999999999999999999886 59999999972 111123332 11
Q ss_pred cCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCC-cEEEEeCCCCCcchhhhc
Q 031257 107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNG-QVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G-~i~~~~~g~~~~~~~~~~ 162 (163)
..+. ..- .++...|++||++++. ++.-...|..+.++|.+.
T Consensus 195 d~gq-----a~~----------l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~R 236 (248)
T PRK13703 195 DQGQ-----AQR----------LGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKR 236 (248)
T ss_pred ChhH-----HHh----------cCCcccceEEEEECCCCcEEEEeeccCCHHHHHHH
Confidence 1110 000 3344455999999885 777778899998888654
No 125
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.69 E-value=1.1e-07 Score=57.55 Aligned_cols=36 Identities=8% Similarity=0.040 Sum_probs=30.0
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEe
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is 72 (163)
.|.||++|||+|....+.+.++.+++... +.++-|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v~ 37 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKVT 37 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence 37899999999999999999999998654 6665553
No 126
>PLN02309 5'-adenylylsulfate reductase
Probab=98.68 E-value=7.5e-08 Score=76.58 Aligned_cols=44 Identities=18% Similarity=0.325 Sum_probs=40.6
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+++++||.||++||++|+...|.+.++.+++...++.+..|+++
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 57899999999999999999999999999998778999999875
No 127
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.64 E-value=8.3e-08 Score=76.52 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=38.7
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCC--eEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG--LEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~--~~ii~is~d 74 (163)
++++++|.||++||++|+...|.+.++.+.+++.+ +.++.|+++
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~ 62 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT 62 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC
Confidence 56789999999999999999999999999887654 888888875
No 128
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.61 E-value=2e-07 Score=61.98 Aligned_cols=24 Identities=13% Similarity=0.283 Sum_probs=20.9
Q ss_pred CCcEEEEEeccCCCCCChhhHHHH
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIEL 54 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l 54 (163)
++|+++|.|++.||++|+..-..+
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHh
Confidence 689999999999999999876553
No 129
>PTZ00102 disulphide isomerase; Provisional
Probab=98.60 E-value=7.2e-08 Score=77.42 Aligned_cols=44 Identities=14% Similarity=0.220 Sum_probs=37.4
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCC--CeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~--~~~ii~is~d 74 (163)
+++.++|.||++||++|+...|.+.++.+.+++. ++.+..|+++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~ 93 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT 93 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC
Confidence 5689999999999999999999999998888654 4777777764
No 130
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.8e-07 Score=67.81 Aligned_cols=45 Identities=27% Similarity=0.306 Sum_probs=38.7
Q ss_pred cccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 28 STYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 28 ~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+.-.+|.++|.|.|+||.+|+...|.+..+..+|+. ..++-|++|
T Consensus 17 s~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd 61 (288)
T KOG0908|consen 17 SAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVD 61 (288)
T ss_pred hccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHH
Confidence 333468999999999999999999999999999965 788888764
No 131
>PTZ00062 glutaredoxin; Provisional
Probab=98.56 E-value=2.3e-07 Score=66.44 Aligned_cols=38 Identities=16% Similarity=0.083 Sum_probs=34.3
Q ss_pred cEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEe
Q 031257 33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (163)
Q Consensus 33 k~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is 72 (163)
..+|++||++||++|+...+.|.++.++|++ +.++-|+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~ 55 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVN 55 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEc
Confidence 5689999999999999999999999999975 7888875
No 132
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.56 E-value=2.8e-07 Score=58.67 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=38.6
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
|+++++.|+++||+.|....+.+.++.++++++ +.++.|+++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~ 53 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDAD 53 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchH
Confidence 789999999999999999999999999999876 889988764
No 133
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.52 E-value=4.8e-08 Score=65.15 Aligned_cols=82 Identities=15% Similarity=0.274 Sum_probs=45.3
Q ss_pred cccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeec
Q 031257 28 STYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV 107 (163)
Q Consensus 28 ~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 107 (163)
+.+..+..++.|..+|||.|...+|.|.++.+..+. +.+=-+.-| ++.+.+.+|+
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~--i~~~~i~rd-------~~~el~~~~l---------------- 91 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANPN--IEVRIILRD-------ENKELMDQYL---------------- 91 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT--EEEEEE-HH-------HHHHHTTTTT----------------
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC--CeEEEEEec-------CChhHHHHHH----------------
Confidence 334556889999999999999999999999998654 444444321 1111111110
Q ss_pred CCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCC
Q 031257 108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT 154 (163)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~ 154 (163)
. .|. ..|| +++++|.+|+.+.++.+..
T Consensus 92 ------------t---~g~--~~IP---~~I~~d~~~~~lg~wgerP 118 (129)
T PF14595_consen 92 ------------T---NGG--RSIP---TFIFLDKDGKELGRWGERP 118 (129)
T ss_dssp ------------T----SS----SS---EEEEE-TT--EEEEEESS-
T ss_pred ------------h---CCC--eecC---EEEEEcCCCCEeEEEcCCC
Confidence 0 022 6778 9999999999999887754
No 134
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.51 E-value=3.7e-07 Score=72.78 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=39.4
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcC-C-CeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD-Q-GLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~-~-~~~ii~is~d 74 (163)
.++.+||.||++||++|+...|.+.++.+.+++ . ++.++.++++
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~ 408 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDAT 408 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECC
Confidence 478999999999999999999999999999987 2 6888888864
No 135
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.44 E-value=5.9e-07 Score=57.37 Aligned_cols=50 Identities=26% Similarity=0.355 Sum_probs=42.1
Q ss_pred eeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 24 EVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 24 ~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
.......+++++++.||++||++|+...|.+.++.+++.. .+.++.++..
T Consensus 24 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 24 PLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred ceehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 3444445588999999999999999999999999999986 5888888863
No 136
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.43 E-value=9.8e-07 Score=63.91 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=33.6
Q ss_pred cccCCcEEEEEecc---CCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 28 STYKGKVLLIVNVA---SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 28 ~~~~gk~vlv~f~~---s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+.+++...++.|.+ +||++|+...|.+.++.+++.. +.+..+.+|
T Consensus 15 ~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd 62 (215)
T TIGR02187 15 KELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFD 62 (215)
T ss_pred HhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecC
Confidence 33455566767877 9999999999999999998853 555555553
No 137
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=98.42 E-value=9.1e-06 Score=55.28 Aligned_cols=140 Identities=17% Similarity=0.205 Sum_probs=87.0
Q ss_pred cCCCcccceEEecC-----CC-----CeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHH-hcCCCeEEEEE-ecC
Q 031257 7 QNPESIFDLSVKDA-----RG-----HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK-YKDQGLEILAF-PCN 74 (163)
Q Consensus 7 ~~~~~~p~f~l~~~-----~G-----~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~-~~~~~~~ii~i-s~d 74 (163)
..|.++|...+.+. +| ++++.+.+.||+-+|...|---..-...-|-+..+.+. |+...++..+| ++|
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d 81 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD 81 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence 56788888887764 33 45566777899888887765444433344445555554 66656777776 454
Q ss_pred CCCCCCCCCHHHHHHHHHhhcCCccceee-eeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCC
Q 031257 75 QFGEEEPGSNDQIADFVCTRFKSEFPIFE-KIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT 153 (163)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~ 153 (163)
+ .-..+..-++..+. .....||.-+ -.|.++.... .|+.- .. ...++|+|++|+|++...|.
T Consensus 82 D---Ai~gt~~fVrss~e-~~kk~~p~s~~vlD~~G~~~~-aW~L~-~~-----------~SaiiVlDK~G~V~F~k~G~ 144 (160)
T PF09695_consen 82 D---AIWGTGGFVRSSAE-DSKKEFPWSQFVLDSNGVVRK-AWQLQ-EE-----------SSAIIVLDKQGKVQFVKEGA 144 (160)
T ss_pred c---ccccchHHHHHHHH-HhhhhCCCcEEEEcCCCceec-cccCC-CC-----------CceEEEEcCCccEEEEECCC
Confidence 2 22234444555554 4444444321 1688875543 33321 11 11679999999999999999
Q ss_pred CCcchhhhcC
Q 031257 154 TSLLSLEVIL 163 (163)
Q Consensus 154 ~~~~~~~~~l 163 (163)
.++++++++|
T Consensus 145 Ls~~Ev~qVi 154 (160)
T PF09695_consen 145 LSPAEVQQVI 154 (160)
T ss_pred CCHHHHHHHH
Confidence 9999988764
No 138
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.37 E-value=1.8e-06 Score=62.52 Aligned_cols=42 Identities=12% Similarity=0.013 Sum_probs=31.4
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
.+.++++.||++||++|+...+.++++..+.. .+.+.-++.+
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~ 173 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEAN 173 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCC
Confidence 34456677999999999998888888887743 3666666653
No 139
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.32 E-value=5.4e-06 Score=51.71 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=37.1
Q ss_pred cccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 28 STYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 28 ~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
.++++.+.+..|+++||++|+...+.++++..++.+ +.+.-++.+
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~--i~~~~vd~~ 52 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN--IEHEMIDGA 52 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC--ceEEEEEhH
Confidence 456777889999999999999999999999987753 777777653
No 140
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=98.29 E-value=8.6e-06 Score=58.78 Aligned_cols=106 Identities=16% Similarity=0.289 Sum_probs=71.2
Q ss_pred eeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCC---eEEEEEecCCCCCCCCCCHHHH-HHHHHhhcCCcc
Q 031257 24 EVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG---LEILAFPCNQFGEEEPGSNDQI-ADFVCTRFKSEF 99 (163)
Q Consensus 24 ~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~---~~ii~is~d~~~~~~~~~~~~~-~~~~~~~~~~~~ 99 (163)
.-.+.+.+|+++||.+--.+|..|..++..|..|..++...| +.++.|+- .+....+ ...++++....+
T Consensus 18 ~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~-------~~~~s~~~~~~l~~r~~~~i 90 (238)
T PF04592_consen 18 QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNH-------QGEHSRLKYWELKRRVSEHI 90 (238)
T ss_pred chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcC-------CCcchhHHHHHHHHhCCCCC
Confidence 455778899999999999999999999999999999988775 56666652 1222222 233444555579
Q ss_pred ceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeC
Q 031257 100 PIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYY 151 (163)
Q Consensus 100 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~ 151 (163)
|++. .|... .+.|..+.-..- -+||+|+-|++.+...
T Consensus 91 pVyq-q~~~q---~dvW~~L~G~kd-----------D~~iyDRCGrL~~~i~ 127 (238)
T PF04592_consen 91 PVYQ-QDENQ---PDVWELLNGSKD-----------DFLIYDRCGRLTYHIP 127 (238)
T ss_pred ceec-CCccc---cCHHHHhCCCcC-----------cEEEEeccCcEEEEec
Confidence 9982 12221 224544422111 4799999999998743
No 141
>smart00594 UAS UAS domain.
Probab=98.26 E-value=8.8e-06 Score=53.73 Aligned_cols=89 Identities=9% Similarity=0.047 Sum_probs=56.6
Q ss_pred cCCcEEEEEeccCCCCCChhhHHHH-H--HHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeee
Q 031257 30 YKGKVLLIVNVASKCGMTNSNYIEL-S--QLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 106 (163)
Q Consensus 30 ~~gk~vlv~f~~s~C~~C~~~~~~l-~--~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 106 (163)
-.+|.++|+|++.||+.|......+ . ++.+.+++ .+.++.++++ +.+ ..+.+. .+
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~--------~~e-g~~l~~-~~----------- 82 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVD--------TSE-GQRVSQ-FY----------- 82 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCC--------Chh-HHHHHH-hc-----------
Confidence 3578999999999999998865432 1 22222222 3666666543 222 122222 21
Q ss_pred cCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCC-----cEEEEeCCCCCcchhhhcC
Q 031257 107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNG-----QVVDRYYPTTSLLSLEVIL 163 (163)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G-----~i~~~~~g~~~~~~~~~~l 163 (163)
++ .++| +++++|++| +++.+..|..+++++...|
T Consensus 83 ------------------~~--~~~P---~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 83 ------------------KL--DSFP---YVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ------------------Cc--CCCC---EEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 11 4566 899999998 5788889999988887643
No 142
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.21 E-value=3.9e-05 Score=54.68 Aligned_cols=88 Identities=14% Similarity=0.185 Sum_probs=69.3
Q ss_pred ccCCCcccceEEecCCCCeeecccc-CCc--EEEEEec-----cCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCC
Q 031257 6 IQNPESIFDLSVKDARGHEVDLSTY-KGK--VLLIVNV-----ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFG 77 (163)
Q Consensus 6 ~~~~~~~p~f~l~~~~G~~~~l~~~-~gk--~vlv~f~-----~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~ 77 (163)
++.+..-.+..+...+|+ ++|.++ .|+ .+|..|. ..-|+.|...+..++.....+..+++.++.||-
T Consensus 40 LP~v~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSr---- 114 (211)
T PF05988_consen 40 LPMVEVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSR---- 114 (211)
T ss_pred CCCccCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeC----
Confidence 333444445778888888 999996 664 5666665 356999999999998777788888899999984
Q ss_pred CCCCCCHHHHHHHHHhhcCCccceee
Q 031257 78 EEEPGSNDQIADFVCTRFKSEFPIFE 103 (163)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (163)
.+.+++..|.+ +.|..||.++
T Consensus 115 ----aP~~~i~afk~-rmGW~~pw~S 135 (211)
T PF05988_consen 115 ----APLEKIEAFKR-RMGWTFPWYS 135 (211)
T ss_pred ----CCHHHHHHHHH-hcCCCceEEE
Confidence 68889999987 8999999983
No 143
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.20 E-value=7.7e-06 Score=50.08 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=31.2
Q ss_pred CCcEEEEEeccCCCCCChhhHHHH---HHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l---~~~~~~~~~~~~~ii~is~d 74 (163)
+||+++|.|+++||+.|+..-..+ .++.+.+.+ ++..+-|..+
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~ 61 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVD 61 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcC
Confidence 589999999999999999976655 233333342 3777777753
No 144
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=2.8e-06 Score=67.80 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=37.0
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCC--CeEEEEEec
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPC 73 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~--~~~ii~is~ 73 (163)
...++|.|||+||.+|+...|++.+.+..+++. .+.+.-|.+
T Consensus 42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDa 85 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA 85 (493)
T ss_pred CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec
Confidence 468999999999999999999999999999987 577777754
No 145
>PHA02125 thioredoxin-like protein
Probab=98.17 E-value=1e-05 Score=48.75 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=19.4
Q ss_pred EEEeccCCCCCChhhHHHHHHH
Q 031257 36 LIVNVASKCGMTNSNYIELSQL 57 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~ 57 (163)
++.|+++||++|+...+.|.++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~ 23 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV 23 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH
Confidence 7899999999999998888654
No 146
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=4.5e-05 Score=51.35 Aligned_cols=132 Identities=20% Similarity=0.225 Sum_probs=86.0
Q ss_pred ccCCCcccceEEecC------CC-Ceeecccc-CCc-EEEEEeccCCCCCChh-hHHHHHHHHHHhcCCCeE-EEEEecC
Q 031257 6 IQNPESIFDLSVKDA------RG-HEVDLSTY-KGK-VLLIVNVASKCGMTNS-NYIELSQLYDKYKDQGLE-ILAFPCN 74 (163)
Q Consensus 6 ~~~~~~~p~f~l~~~------~G-~~~~l~~~-~gk-~vlv~f~~s~C~~C~~-~~~~l~~~~~~~~~~~~~-ii~is~d 74 (163)
.++|+.+|..++... +| ..++.+++ +|| ++|....+...|-|.. ++|.+.++..+++++|+. |+.||+|
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 568899999887765 22 34555664 776 5566666899999998 899999999999999864 4556765
Q ss_pred CCCCCCCCCHHHHHHHHHhhcCC-ccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeC
Q 031257 75 QFGEEEPGSNDQIADFVCTRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYY 151 (163)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~ 151 (163)
+.--..+|.+....- .-.++ .|.+++.++.+ ..+.....+ +.++.+.-...|| +||.|.+-+.
T Consensus 83 --------D~FVm~AWak~~g~~~~I~fi--~Dg~geFTk~~-Gm~~d~~~~--g~G~RS~RYsmvV-~nGvV~~~~i 146 (165)
T COG0678 83 --------DAFVMNAWAKSQGGEGNIKFI--PDGNGEFTKAM-GMLVDKSDL--GFGVRSWRYSMVV-ENGVVEKLFI 146 (165)
T ss_pred --------cHHHHHHHHHhcCCCccEEEe--cCCCchhhhhc-CceeecccC--CcceeeeeEEEEE-eCCeEEEEEe
Confidence 677888888744333 34555 78888777643 222111111 1233333345666 5798876543
No 147
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.01 E-value=6e-05 Score=44.44 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=24.4
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+..|+++||++|....+.|.+ .++.+..++++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~ 33 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVE 33 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEecc
Confidence 467889999999987766644 35778778765
No 148
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.98 E-value=1.1e-05 Score=65.29 Aligned_cols=89 Identities=11% Similarity=0.026 Sum_probs=58.5
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHH-HHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELS-QLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG 109 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~-~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 109 (163)
++|+|+|+|+|.||--|+..-+..= +-+...+-.++..+-.+.. .++.+..+.++ ++++
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT-------~~~p~~~~lLk-~~~~------------ 532 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVT-------ANDPAITALLK-RLGV------------ 532 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeec-------CCCHHHHHHHH-HcCC------------
Confidence 4569999999999999988765433 4455555556888887764 34555555665 3222
Q ss_pred CcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhh
Q 031257 110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161 (163)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (163)
.++| ++++++++|+-.....|..+.+.+.+
T Consensus 533 -------------------~G~P---~~~ff~~~g~e~~~l~gf~~a~~~~~ 562 (569)
T COG4232 533 -------------------FGVP---TYLFFGPQGSEPEILTGFLTADAFLE 562 (569)
T ss_pred -------------------CCCC---EEEEECCCCCcCcCCcceecHHHHHH
Confidence 4666 77888877776655556655544443
No 149
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.95 E-value=4e-05 Score=44.81 Aligned_cols=38 Identities=8% Similarity=0.045 Sum_probs=30.9
Q ss_pred EEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 35 LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 35 vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
-+..|+++|||+|....+.|+++...+. ++.+..++.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAA 39 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcc
Confidence 4778999999999999999999876543 4888888764
No 150
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.95 E-value=4.8e-05 Score=56.30 Aligned_cols=131 Identities=19% Similarity=0.223 Sum_probs=74.6
Q ss_pred CCcccceEEecCCCCeeeccc-cCCcEEEEEeccC-CCCCChhhH--HHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCH
Q 031257 9 PESIFDLSVKDARGHEVDLST-YKGKVLLIVNVAS-KCGMTNSNY--IELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN 84 (163)
Q Consensus 9 ~~~~p~f~l~~~~G~~~~l~~-~~gk~vlv~f~~s-~C~~C~~~~--~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~ 84 (163)
...+|+|..++++|+.+++.+ ++||+.||.++.+ |-..|.... |.+.++... +...++++-|++- .
T Consensus 98 AlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~-~~~~~q~v~In~~---------e 167 (252)
T PF05176_consen 98 ALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQE-PYGRVQIVEINLI---------E 167 (252)
T ss_pred CCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhC-CCCceEEEEEecc---------h
Confidence 346799999999999888876 5899887777754 444444433 333333322 1115999999962 2
Q ss_pred HHHHHHHHhhc------------CCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCC
Q 031257 85 DQIADFVCTRF------------KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP 152 (163)
Q Consensus 85 ~~~~~~~~~~~------------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g 152 (163)
..++.++..-. ...|-+. + .+.....+-..+ |+...-+- .+||||++|+|++...|
T Consensus 168 ~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~---~-~~~~~~~iRe~L-----gi~N~~~G---YvyLVD~~grIRWagsG 235 (252)
T PF05176_consen 168 NWLKSWLVKLFMGSLRKSIPEERHDRYFIV---Y-RGQLSDDIREAL-----GINNSYVG---YVYLVDPNGRIRWAGSG 235 (252)
T ss_pred HHHHHHHHHHHhhhhhccCCHHHCceEEEE---e-CCcccHHHHHHh-----CCCCCCcC---eEEEECCCCeEEeCccC
Confidence 33334433110 1122111 1 110111111111 22112222 68999999999999999
Q ss_pred CCCcchhhh
Q 031257 153 TTSLLSLEV 161 (163)
Q Consensus 153 ~~~~~~~~~ 161 (163)
..++++++.
T Consensus 236 ~At~~E~~~ 244 (252)
T PF05176_consen 236 PATPEELES 244 (252)
T ss_pred CCCHHHHHH
Confidence 999988765
No 151
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.84 E-value=0.0001 Score=41.37 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=31.6
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
|+.||++||+.|....+.+.++ +....++.++.++++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~ 37 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVD 37 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcC
Confidence 5789999999999999999998 444456999999876
No 152
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=5.3e-05 Score=60.67 Aligned_cols=43 Identities=28% Similarity=0.375 Sum_probs=37.7
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCC-CeEEEEEec
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPC 73 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~-~~~ii~is~ 73 (163)
.+|-|||.|+|+||++|+...|.+++|.+.|++. ++.|.-+..
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDa 426 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDA 426 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecc
Confidence 4689999999999999999999999999999986 566666654
No 153
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00048 Score=46.84 Aligned_cols=101 Identities=12% Similarity=0.101 Sum_probs=61.6
Q ss_pred cCCcEEEEEeccCCCCCChhhHHH---HHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeee
Q 031257 30 YKGKVLLIVNVASKCGMTNSNYIE---LSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 106 (163)
Q Consensus 30 ~~gk~vlv~f~~s~C~~C~~~~~~---l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 106 (163)
..+|..++.|-...|++|...-.. -.++++.+.++ +.++.+.+.. .+ ...|..- +
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i~~--------sk----------pv~f~~g---~ 97 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNISY--------SK----------PVLFKVG---D 97 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEecc--------Cc----------ceEeecC---c
Confidence 367999999999999999775333 33455555554 6677776521 00 0111110 0
Q ss_pred c-CCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 107 V-NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 107 ~-~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
. ......++.+- .++..+|+.++.|++|+.+....|..++++...+
T Consensus 98 kee~~s~~ELa~k----------f~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~v 144 (182)
T COG2143 98 KEEKMSTEELAQK----------FAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAV 144 (182)
T ss_pred eeeeecHHHHHHH----------hccccCceEEEEcCCCCEEEecCCCCCHHHHHHH
Confidence 0 00001122222 3555666999999999999999999999887654
No 154
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.57 E-value=0.00041 Score=45.28 Aligned_cols=42 Identities=12% Similarity=-0.004 Sum_probs=30.0
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCC--CeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~--~~~ii~is~d 74 (163)
+.+.+||.|+|+| |.|.+ +|...++..++... .+.|.-|.++
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~ 60 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIK 60 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecc
Confidence 4578999999966 66655 47777887777442 3777777775
No 155
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00026 Score=55.70 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=37.2
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
.+++.+|.||++||.+|.+..+.+.++.+.+++. +.+..|.++
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd~~ 88 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-VKIGAVDCD 88 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-eEEEEeCch
Confidence 3579999999999999999999999999999883 777777653
No 156
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.50 E-value=0.00033 Score=42.60 Aligned_cols=47 Identities=19% Similarity=0.271 Sum_probs=32.1
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC 92 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~ 92 (163)
|+.|+++|||+|....+.|.++. .+. .+.++-|+.+ ....++.+++.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~-------~~~~~~~~~l~ 47 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQL-------SNGSEIQDYLE 47 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCC-------CChHHHHHHHH
Confidence 46788999999999998888875 222 2677777643 23445555554
No 157
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.46 E-value=0.00086 Score=43.87 Aligned_cols=85 Identities=9% Similarity=-0.002 Sum_probs=56.8
Q ss_pred cCCcEEEEEeccC----CCCCChhhH--HHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceee
Q 031257 30 YKGKVLLIVNVAS----KCGMTNSNY--IELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFE 103 (163)
Q Consensus 30 ~~gk~vlv~f~~s----~C~~C~~~~--~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (163)
-.+|+++|+++.. ||..|+..+ +.+.++.++ ++.+++.++. +.+ ..+... ..+
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~----~fv~w~~dv~--------~~e-g~~la~-~l~------- 73 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT----RMLFWACSVA--------KPE-GYRVSQ-ALR------- 73 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc----CEEEEEEecC--------ChH-HHHHHH-HhC-------
Confidence 3579999999998 778898776 666666642 3777777763 222 122221 111
Q ss_pred eeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEE---CCCCcEEEEeCCCCCcchhhhc
Q 031257 104 KIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLV---DKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 104 ~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~li---d~~G~i~~~~~g~~~~~~~~~~ 162 (163)
. ..+| .+.+| +.+.+++.+..|..+++++...
T Consensus 74 ----------------------~--~~~P---~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~ 108 (116)
T cd02991 74 ----------------------E--RTYP---FLAMIMLKDNRMTIVGRLEGLIQPEDLINR 108 (116)
T ss_pred ----------------------C--CCCC---EEEEEEecCCceEEEEEEeCCCCHHHHHHH
Confidence 1 3445 77777 7777889999999999888764
No 158
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.46 E-value=0.0016 Score=48.33 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=25.7
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHH
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDK 60 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~ 60 (163)
.++.+|+.|....||+|++..+++.++.+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~ 145 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS 145 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc
Confidence 457899999999999999999998887653
No 159
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=97.38 E-value=0.0019 Score=41.93 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCCcchhH------------------
Q 031257 54 LSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPL------------------ 115 (163)
Q Consensus 54 l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------------------ 115 (163)
|.+...++++.|+.++.|.+. +.+.+++|+. ..+.+++++ .|++......+
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g--------~~~~~~~f~~-~~~~p~~ly--~D~~~~lY~~lg~~~~~~~~~~~~~~~~~ 70 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCG--------SPEGIEKFCE-LTGFPFPLY--VDPERKLYKALGLKRGLKWSLLPPALWSG 70 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcC--------CHHHHHHHHh-ccCCCCcEE--EeCcHHHHHHhCCccccccCCCchHHHHH
Confidence 556677777789999999974 6656999986 789999988 77654221100
Q ss_pred H----HHhHh-CCCccc-CCccccCeeEEEECCCCcEEEEeCC
Q 031257 116 Y----KLLKS-GKWGIF-GDDIQWNFAKFLVDKNGQVVDRYYP 152 (163)
Q Consensus 116 ~----~~~~~-~~~~~~-~~~ip~~~~~~lid~~G~i~~~~~g 152 (163)
+ ..... ..++.. ...+.....+||+|++|+|++.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~ 113 (115)
T PF13911_consen 71 LSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRD 113 (115)
T ss_pred HHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEec
Confidence 0 00111 111111 1233334478999999999998754
No 160
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.25 E-value=0.0064 Score=43.70 Aligned_cols=82 Identities=11% Similarity=0.209 Sum_probs=61.8
Q ss_pred eEEecCCCCeeecccc-CCc--EEEEEec-cC----CCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHH
Q 031257 15 LSVKDARGHEVDLSTY-KGK--VLLIVNV-AS----KCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQ 86 (163)
Q Consensus 15 f~l~~~~G~~~~l~~~-~gk--~vlv~f~-~s----~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~ 86 (163)
..+...+|+ .+|+++ .|+ .+|..|+ ++ -||.|......+.-....+...++.++.||= .+.++
T Consensus 55 Y~Fe~~~G~-~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsR--------APl~~ 125 (247)
T COG4312 55 YVFETENGK-KSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSR--------APLEE 125 (247)
T ss_pred eEeecCCcc-hhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEec--------CcHHH
Confidence 445566775 788886 564 5555554 33 5999999999998888888888899999983 57788
Q ss_pred HHHHHHhhcCCccceeeeee
Q 031257 87 IADFVCTRFKSEFPIFEKID 106 (163)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~d 106 (163)
+..+-+ +.+..||.++..|
T Consensus 126 l~~~k~-rmGW~f~w~Ss~~ 144 (247)
T COG4312 126 LVAYKR-RMGWQFPWVSSTD 144 (247)
T ss_pred HHHHHH-hcCCcceeEeccC
Confidence 888866 8999999984333
No 161
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.10 E-value=0.00021 Score=57.70 Aligned_cols=60 Identities=15% Similarity=0.288 Sum_probs=45.0
Q ss_pred cEEEEEeccCCCCCChhhHHHHHHHHHHhcCC--CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC-cccee
Q 031257 33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS-EFPIF 102 (163)
Q Consensus 33 k~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~--~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 102 (163)
+.-+|.|+++||++|+...|.++++.+..... -+.|.+|++- .+.=.+.++ ++++ .||.+
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA---------~~~N~~lCR-ef~V~~~Ptl 120 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA---------DEENVKLCR-EFSVSGYPTL 120 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc---------chhhhhhHh-hcCCCCCcee
Confidence 47899999999999999999999999988765 3777788773 222233454 5666 57776
No 162
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.09 E-value=0.0014 Score=45.28 Aligned_cols=88 Identities=9% Similarity=0.097 Sum_probs=44.4
Q ss_pred CCCCeeeccccCCcEEEEEeccCCCCCChhhH------HHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 031257 20 ARGHEVDLSTYKGKVLLIVNVASKCGMTNSNY------IELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCT 93 (163)
Q Consensus 20 ~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~------~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~ 93 (163)
.+.+.+..+.-.+|+++|.+.++||..|.... +++.++.++ .+|.|-+|. +...++......
T Consensus 25 w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~------~FI~VkvDr------ee~Pdid~~y~~ 92 (163)
T PF03190_consen 25 WGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR------NFIPVKVDR------EERPDIDKIYMN 92 (163)
T ss_dssp SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH------H-EEEEEET------TT-HHHHHHHHH
T ss_pred CCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC------CEEEEEecc------ccCccHHHHHHH
Confidence 33344445555689999999999999998765 344444432 255555541 333444333221
Q ss_pred hcCCccceeeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEE
Q 031257 94 RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR 149 (163)
Q Consensus 94 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~ 149 (163)
+..... |. .+.| .+++++|+|+..+.
T Consensus 93 ----------------------~~~~~~---~~--gGwP---l~vfltPdg~p~~~ 118 (163)
T PF03190_consen 93 ----------------------AVQAMS---GS--GGWP---LTVFLTPDGKPFFG 118 (163)
T ss_dssp ----------------------HHHHHH---S-----SS---EEEEE-TTS-EEEE
T ss_pred ----------------------HHHHhc---CC--CCCC---ceEEECCCCCeeee
Confidence 011111 11 4556 99999999999986
No 163
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.04 E-value=0.0025 Score=37.85 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=23.1
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+..||++||++|+...+.|.++ ++.+-.++++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~ 33 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIE 33 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCc
Confidence 6789999999999987776544 3444456654
No 164
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.03 E-value=0.00092 Score=50.30 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=32.5
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCC----CeEEEEEecC
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ----GLEILAFPCN 74 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~----~~~ii~is~d 74 (163)
...++|.|+|.||+.++...|.+.+....++++ .+..-.|.+|
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd 59 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD 59 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc
Confidence 468999999999999999999998866655443 3444455553
No 165
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.0019 Score=41.99 Aligned_cols=47 Identities=11% Similarity=0.189 Sum_probs=36.8
Q ss_pred cccc-CCcEEEEEecc--------CCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 27 LSTY-KGKVLLIVNVA--------SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 27 l~~~-~gk~vlv~f~~--------s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
++++ +|+.+.|.|.+ ||||.|....|-+.+..+..++ ++.+|-+-+.
T Consensus 19 ~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG 74 (128)
T KOG3425|consen 19 LKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVG 74 (128)
T ss_pred HHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEec
Confidence 3444 56778888875 5899999999999999986665 4888888764
No 166
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=97.00 E-value=0.0082 Score=39.36 Aligned_cols=103 Identities=15% Similarity=0.110 Sum_probs=59.7
Q ss_pred ccccCCcE-EEEEecc-CCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeee
Q 031257 27 LSTYKGKV-LLIVNVA-SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEK 104 (163)
Q Consensus 27 l~~~~gk~-vlv~f~~-s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (163)
|++++++. +||.|-. ..-+.=..++..|++-...+.++.+.++.+.-+...............-+.+.+++
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~------- 75 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRI------- 75 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCC-------
Confidence 56666653 3344433 34455677888888888888888888888853311111000001111111111111
Q ss_pred eecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 105 IDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 105 ~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
+ |..++.+||+++|.+..++....++++|-..
T Consensus 76 -------------------------~-~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ 107 (118)
T PF13778_consen 76 -------------------------P-PGGFTVVLIGKDGGVKLRWPEPIDPEELFDT 107 (118)
T ss_pred -------------------------C-CCceEEEEEeCCCcEEEecCCCCCHHHHHHH
Confidence 0 2233789999999999998888888877654
No 167
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.015 Score=39.66 Aligned_cols=98 Identities=18% Similarity=0.245 Sum_probs=68.5
Q ss_pred cccCCCcccceEEe---cCC----CCeeecccc-CCc-EEEEEeccCCCCC-ChhhHHHHHHHHHHhcCCCeEE-EEEec
Q 031257 5 FIQNPESIFDLSVK---DAR----GHEVDLSTY-KGK-VLLIVNVASKCGM-TNSNYIELSQLYDKYKDQGLEI-LAFPC 73 (163)
Q Consensus 5 ~~~~~~~~p~f~l~---~~~----G~~~~l~~~-~gk-~vlv~f~~s~C~~-C~~~~~~l~~~~~~~~~~~~~i-i~is~ 73 (163)
.+.+|+.+|+-++. +.. |-+++++++ +|| .+|.-..+...|. |...+|.+.+-..+++.+|+.. +.+++
T Consensus 8 ~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSV 87 (171)
T KOG0541|consen 8 PIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSV 87 (171)
T ss_pred cccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEec
Confidence 46789999993332 211 226788886 784 5666666889998 5667899999999999998654 66677
Q ss_pred CCCCCCCCCCHHHHHHHHHhhcCCc--cceeeeeecCCCcch
Q 031257 74 NQFGEEEPGSNDQIADFVCTRFKSE--FPIFEKIDVNGEHAS 113 (163)
Q Consensus 74 d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~ 113 (163)
| ++-..+.|.+ .++.+ -.++ .|.++..+.
T Consensus 88 n--------DpFv~~aW~k-~~g~~~~V~f~--aD~~g~ftk 118 (171)
T KOG0541|consen 88 N--------DPFVMKAWAK-SLGANDHVKFV--ADPAGEFTK 118 (171)
T ss_pred C--------cHHHHHHHHh-hcCccceEEEE--ecCCCceee
Confidence 5 6778888876 56553 3344 777776665
No 168
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.97 E-value=0.0016 Score=42.70 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=32.9
Q ss_pred CCcEEEEEecc-------CCCCCChhhHHHHHHHHHHhcCCCeEEEEEec
Q 031257 31 KGKVLLIVNVA-------SKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 31 ~gk~vlv~f~~-------s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
.+++++|.|.+ +|||.|....|.+.+.....++ +..+|-+.+
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~V 66 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEV 66 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE-
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEc
Confidence 46788888885 4999999999999999888554 588888876
No 169
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.81 E-value=0.0029 Score=46.45 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=30.6
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEec
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
.|+.+|+.|....||+|++..+.+.++.+ .++.+..+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~~ 144 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLAF 144 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEec
Confidence 46889999999999999999988877643 3566665544
No 170
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.63 E-value=0.0083 Score=36.71 Aligned_cols=37 Identities=5% Similarity=0.035 Sum_probs=29.8
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+..|..+|||+|......|+++..++. ++.+.-++++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~ 39 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD--DFDYRYVDIH 39 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc--CCcEEEEECC
Confidence 667888999999999999999887653 4777777764
No 171
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.60 E-value=0.0044 Score=41.75 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=33.0
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEec
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
.++++|+.|+..+||+|....+.+.++..++.+ +.++...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD--VRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC--ceEEEEeC
Confidence 467899999999999999999999998887754 55555443
No 172
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.55 E-value=0.012 Score=41.89 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=23.5
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHH
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQ 56 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~ 56 (163)
.+++.++.|....||+|++..+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 46899999999999999999998877
No 173
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.52 E-value=0.0073 Score=41.20 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=39.6
Q ss_pred eeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHh--cCCCeEEEEEecC
Q 031257 24 EVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKY--KDQGLEILAFPCN 74 (163)
Q Consensus 24 ~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~--~~~~~~ii~is~d 74 (163)
.+.+.+-.++++|+.|+...||+|....+.+.++.+++ ++ .+.++...+.
T Consensus 4 ~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~ 55 (162)
T PF13462_consen 4 DPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVP 55 (162)
T ss_dssp SEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESS
T ss_pred CCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEcc
Confidence 34566666789999999999999999999999999998 44 4888887763
No 174
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.44 E-value=0.0069 Score=36.33 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=19.5
Q ss_pred ccCCCCCChhhHHHHHHHHHHhc
Q 031257 40 VASKCGMTNSNYIELSQLYDKYK 62 (163)
Q Consensus 40 ~~s~C~~C~~~~~~l~~~~~~~~ 62 (163)
++++|+.|......++++..++.
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~ 28 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG 28 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC
Confidence 57779999999999999888873
No 175
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.21 E-value=0.067 Score=35.74 Aligned_cols=90 Identities=13% Similarity=0.220 Sum_probs=59.0
Q ss_pred ecccc--CCcEEEEEecc--CCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccce
Q 031257 26 DLSTY--KGKVLLIVNVA--SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPI 101 (163)
Q Consensus 26 ~l~~~--~gk~vlv~f~~--s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (163)
+++++ .+...+|+|-+ .-+|-+....-.|.++.++|.+..+.++-|++| ...++.. ++
T Consensus 26 ~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD--------~~~~LA~----~f------ 87 (132)
T PRK11509 26 RLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE--------QSEAIGD----RF------ 87 (132)
T ss_pred cHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECC--------CCHHHHH----Hc------
Confidence 34454 23456666664 346777777778888888886544888888875 2222221 21
Q ss_pred eeeeecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 102 FEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 102 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
|+ .++| +++++ ++|+++.+..|..+.+++.+.
T Consensus 88 -----------------------gV--~siP---TLl~F-kdGk~v~~i~G~~~k~~l~~~ 119 (132)
T PRK11509 88 -----------------------GV--FRFP---ATLVF-TGGNYRGVLNGIHPWAELINL 119 (132)
T ss_pred -----------------------CC--ccCC---EEEEE-ECCEEEEEEeCcCCHHHHHHH
Confidence 22 6677 66666 799999999998888777654
No 176
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.061 Score=37.86 Aligned_cols=55 Identities=22% Similarity=0.401 Sum_probs=44.7
Q ss_pred ecCCCCeeecccc-CCcEEEEEec-cCCCCCChhhHHHHHHHHHHhcCCCeEEEEEe
Q 031257 18 KDARGHEVDLSTY-KGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (163)
Q Consensus 18 ~~~~G~~~~l~~~-~gk~vlv~f~-~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is 72 (163)
.+..|+.+..+++ +....+|.|. -.-|-.|+++...|.++..-+++.|+.+++|-
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 4568999999997 4445555555 57899999999999999878888899999986
No 177
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.03 E-value=0.036 Score=32.10 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=22.3
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
++.|..+||+.|......|.+ .++.+..++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~ 33 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVD 33 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCC
Confidence 567788999999986665544 34666666654
No 178
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.97 E-value=0.023 Score=34.14 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=24.4
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
|+.|..+|||+|...-..|.++.. .+.++-++.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~ 35 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQH 35 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCC
Confidence 467778999999988877776543 2566666643
No 179
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=95.95 E-value=0.0026 Score=47.97 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=28.7
Q ss_pred cEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeE
Q 031257 33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLE 67 (163)
Q Consensus 33 k~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ 67 (163)
..++|.|+|+||.+|++.-|.-.+.-.++++-|..
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~P 78 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLP 78 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCc
Confidence 48999999999999999988888777776665433
No 180
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.90 E-value=0.083 Score=39.59 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=34.3
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEec
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
+.+|||+||-+.++.|...-..|..|+.+|+. +.|+-|..
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a 185 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRA 185 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEE
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEeh
Confidence 45899999999999999999999999999987 89999875
No 181
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.011 Score=46.55 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=36.4
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcC-CCeEEEEEec
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKD-QGLEILAFPC 73 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~-~~~~ii~is~ 73 (163)
...++|.|+++||++|+...+.+.++...+.. .++.+..+++
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~ 204 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDA 204 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeecc
Confidence 35789999999999999999999999998874 5688888875
No 182
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.71 E-value=0.066 Score=31.54 Aligned_cols=32 Identities=9% Similarity=0.210 Sum_probs=22.6
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+..|..++||+|......|++ .++.+-.++++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~ 33 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVD 33 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECC
Confidence 456778999999887766654 34666666664
No 183
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.54 E-value=0.056 Score=33.17 Aligned_cols=37 Identities=8% Similarity=0.004 Sum_probs=25.7
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
++.|..+|||+|......|.++..++. ++.+.-++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 456778999999998888877764433 3556556553
No 184
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=95.53 E-value=0.031 Score=37.98 Aligned_cols=141 Identities=17% Similarity=0.233 Sum_probs=74.8
Q ss_pred ccCCCcccceEEecC-----CCCee-----eccccCCcEEEEEeccCCCCCChhhHHHHHHHHH-HhcCCCeEEEEE-ec
Q 031257 6 IQNPESIFDLSVKDA-----RGHEV-----DLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYD-KYKDQGLEILAF-PC 73 (163)
Q Consensus 6 ~~~~~~~p~f~l~~~-----~G~~~-----~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~-~~~~~~~~ii~i-s~ 73 (163)
++.+.++|...+.+. +|..+ ..+++-||+-+|.--|--...=....+-+..+.. +|+...++--.| +.
T Consensus 23 lq~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hiAGRtsaKE~Na~lieaIk~a~fp~~~YQTTTIiN~ 102 (184)
T COG3054 23 LQLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKFPHDRYQTTTIINT 102 (184)
T ss_pred cccCCcCCCccccccceEEecCcceeecccchhhccchhhhhhhhhcccchhhhchHHHHHHHhccCChHHceeeEEecc
Confidence 567888888776653 34433 3455678877776665443332222333333332 333333444333 44
Q ss_pred CCCCCCCCCCHHHHHHHHHhhcCCccceeee-eecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEEeCC
Q 031257 74 NQFGEEEPGSNDQIADFVCTRFKSEFPIFEK-IDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP 152 (163)
Q Consensus 74 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g 152 (163)
|+.. ..+.--++.-+. .....||..+- .|.++ ..+..|+.-.+ .. ..+++|++|++.+...|
T Consensus 103 DDAi---~GtgmFVkssae-~~Kke~pwSq~vlD~~g-vak~AWqL~e~-~S-----------aivVlDk~G~VkfvkeG 165 (184)
T COG3054 103 DDAI---PGTGMFVKSSAE-SNKKEYPWSQFVLDSNG-VAKNAWQLKEE-SS-----------AVVVLDKDGRVKFVKEG 165 (184)
T ss_pred CCcc---ccccceeecchh-hccccCCceeeEEccch-hhhhhhccccc-cc-----------eEEEEcCCCcEEEEecC
Confidence 4211 122222233222 33444444211 56666 44434433211 11 67999999999999999
Q ss_pred CCCcchhhhcC
Q 031257 153 TTSLLSLEVIL 163 (163)
Q Consensus 153 ~~~~~~~~~~l 163 (163)
..+.+++..+|
T Consensus 166 aLt~aevQ~Vi 176 (184)
T COG3054 166 ALTQAEVQQVI 176 (184)
T ss_pred CccHHHHHHHH
Confidence 99988887653
No 185
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=95.50 E-value=0.031 Score=38.75 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=34.9
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEec
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
.++++|+.|+...||+|....+.+.++.++++++ +.+.-+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~-v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD-VKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC-ceEEEcCC
Confidence 5789999999999999999999999999988654 66654443
No 186
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.46 E-value=0.048 Score=30.85 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=22.8
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
++.|..++||+|......| +++|+.+-.++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~ 32 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVD 32 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGG
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccc
Confidence 4677889999998776665 3345677777664
No 187
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.02 Score=41.34 Aligned_cols=44 Identities=18% Similarity=0.009 Sum_probs=39.3
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+.+.+||.|++.|.|.|....|-+.++..+|...++.+=.|.+.
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG 186 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG 186 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec
Confidence 45689999999999999999999999999999888888777765
No 188
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.30 E-value=0.065 Score=32.06 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=21.3
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
|..|+.++||+|......|++ .++.+-.++++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~ 32 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVD 32 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH-------cCCCcEEEEec
Confidence 356778999999887776654 33455555553
No 189
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.099 Score=31.16 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=30.9
Q ss_pred EEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 031257 37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC 92 (163)
Q Consensus 37 v~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~ 92 (163)
+.|++-.||.|......|.++.-. +..+-|. .+-..+++|+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~-----yd~VeIt---------~Sm~NlKrFl~ 46 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD-----YDFVEIT---------ESMANLKRFLH 46 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC-----ceeeehh---------hhhhhHHHHHh
Confidence 568889999999888888776433 4556664 36778888876
No 190
>PHA03050 glutaredoxin; Provisional
Probab=95.27 E-value=0.041 Score=35.46 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=17.6
Q ss_pred EEEEeccCCCCCChhhHHHHHHH
Q 031257 35 LLIVNVASKCGMTNSNYIELSQL 57 (163)
Q Consensus 35 vlv~f~~s~C~~C~~~~~~l~~~ 57 (163)
-|+.|..+|||+|.....-|.+.
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKF 36 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHc
Confidence 47778899999998776666544
No 191
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.23 E-value=0.081 Score=30.38 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=22.7
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
++.|..+|||.|+.....|.+. ++.+.-++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~ 33 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------GIEFEEIDIL 33 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCcEEEEECC
Confidence 4567789999998887777654 3555566653
No 192
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.92 E-value=0.13 Score=42.54 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=28.7
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEe
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is 72 (163)
++..+-.|..++||+|+.....++++..+.++ +..-.|.
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~--i~~~~i~ 514 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN--VEAEMID 514 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC--ceEEEEE
Confidence 33446666799999999999999999888653 5544444
No 193
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.69 E-value=0.23 Score=29.17 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=22.5
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
++.|..++||.|+.....|.+ .|+.+-.++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~ 34 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEINID 34 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CCCceEEEECC
Confidence 456677999999887766654 45666666664
No 194
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.17 Score=30.60 Aligned_cols=44 Identities=9% Similarity=0.202 Sum_probs=27.8
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC 92 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~ 92 (163)
++.|.-++||+|...-..|. ++|+.+.-+.++ .+..++.++++.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~------~~~~~~~~~~~~ 46 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVD------DDEPEEAREMVK 46 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEec------CCcHHHHHHHHH
Confidence 45566788999987766665 445666666554 133446666665
No 195
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.59 E-value=0.12 Score=31.06 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=25.8
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+.+.-|+.|..+|||+|...-..|.+ .|+.+-.++++
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~idi~ 41 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKE-------KGYDFEEIPLG 41 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHH-------cCCCcEEEECC
Confidence 34455778889999999887766643 35666667664
No 196
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.38 E-value=0.38 Score=30.80 Aligned_cols=58 Identities=14% Similarity=0.340 Sum_probs=38.1
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS 97 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~ 97 (163)
..++++|+=..|.||.....+.+|++.+....+. +.+..+.+ -...++.+.+.+++++
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v--------~~~R~vSn~IAe~~~V 75 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDV--------IEYRPVSNAIAEDFGV 75 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEG--------GGGHHHHHHHHHHHT-
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEE--------EeCchhHHHHHHHhCC
Confidence 3578888888999999999999999999988775 67777665 2455666666654333
No 197
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=94.37 E-value=0.22 Score=31.34 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=23.3
Q ss_pred CCcEEEEEecc----CCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVA----SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~----s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+.+.|+|+-.+ +|||+|...-.-|++ .|+.+..++++
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~ 50 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVL 50 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECC
Confidence 34566666653 799999876655544 34556566653
No 198
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.06 E-value=0.25 Score=30.48 Aligned_cols=37 Identities=22% Similarity=0.392 Sum_probs=22.8
Q ss_pred CCcEEEEEecc----CCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVA----SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~----s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
++++++|+--. +|||+|...-..|.+. ++.+-.++++
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~ 46 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTFDIL 46 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcC
Confidence 45566666543 6999998766555443 3555555553
No 199
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.03 E-value=0.27 Score=29.85 Aligned_cols=32 Identities=6% Similarity=0.281 Sum_probs=22.9
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+..|..+|||+|...-..| .++|+.+-.++++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~ 34 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAM-------ESRGFDFEMINVD 34 (81)
T ss_pred EEEEeCCCCHhHHHHHHHH-------HHCCCceEEEECC
Confidence 4567789999998766555 3356777777765
No 200
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=93.61 E-value=0.25 Score=29.02 Aligned_cols=31 Identities=13% Similarity=0.217 Sum_probs=22.0
Q ss_pred EEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 37 v~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
..|..++||.|......|.+ +|+.+-.++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~ 32 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINID 32 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECC
Confidence 45667999999887776653 45666666664
No 201
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=93.21 E-value=0.54 Score=29.82 Aligned_cols=48 Identities=13% Similarity=0.335 Sum_probs=29.9
Q ss_pred EEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 031257 37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK 96 (163)
Q Consensus 37 v~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~ 96 (163)
..|..++|+.|++...-|++ +|+.+-.+++. ....+.+++.++.. ..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~~l~~~~~-~~~ 49 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYL----KEPPTKEELKELLA-KLG 49 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeec----cCCCCHHHHHHHHH-hcC
Confidence 35667999999888765544 34444444442 12356778888776 445
No 202
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=93.06 E-value=0.16 Score=30.88 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=29.0
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
|..|+...||+|....+.+.++....+. ++.+....+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccc
Confidence 4678899999999999999998855444 4676666553
No 203
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=92.95 E-value=0.15 Score=36.70 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=37.0
Q ss_pred CCCeeec--cccCCcEEEEEeccCCCCCChhhHHHH---HHHHHHhcCCCeEEEEEec
Q 031257 21 RGHEVDL--STYKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 21 ~G~~~~l--~~~~gk~vlv~f~~s~C~~C~~~~~~l---~~~~~~~~~~~~~ii~is~ 73 (163)
+|+.++. ....|++.|+.|+.-.||+|....+.+ ..+.+.+.+ ++.++-+.+
T Consensus 24 ~G~~Y~~~~~p~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~~ 80 (207)
T PRK10954 24 DGKQYTTLDKPVAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYHV 80 (207)
T ss_pred CCceeEEecCcCCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEecc
Confidence 4664432 224678999999999999999988765 677777764 366665554
No 204
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.94 E-value=0.43 Score=27.86 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=22.1
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
++.|..++||+|......|++ .++.+-.++++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~ 34 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLG 34 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECC
Confidence 566778999999888666653 34666666654
No 205
>PRK10638 glutaredoxin 3; Provisional
Probab=92.84 E-value=0.43 Score=28.84 Aligned_cols=32 Identities=13% Similarity=0.334 Sum_probs=21.1
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+..|..++||+|......|.+ +++..-.++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~ 35 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPID 35 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence 445667999999887766654 34555555554
No 206
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=92.53 E-value=0.34 Score=30.61 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=14.8
Q ss_pred EEEeccCCCCCChhhHHHHH
Q 031257 36 LIVNVASKCGMTNSNYIELS 55 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~ 55 (163)
|+.|..+|||+|...-.-|.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~ 29 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLL 29 (99)
T ss_pred EEEEECCCCHHHHHHHHHHH
Confidence 56677899999987665443
No 207
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.29 E-value=1.1 Score=36.06 Aligned_cols=65 Identities=11% Similarity=0.156 Sum_probs=49.1
Q ss_pred CcccceEEecCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCC
Q 031257 10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQ 75 (163)
Q Consensus 10 ~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~ 75 (163)
..+-.+.+.-.+|+.+++.+++|..-+|...++- .+|.+.+...+...+++.+++|-||-|..+.
T Consensus 274 e~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~ 338 (453)
T PLN03098 274 ETLSRLPVRLSTNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWGE 338 (453)
T ss_pred hhhccceEeccCCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecCC
Confidence 3445556666678899999999965444444443 6778888888889999999999999998763
No 208
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=0.4 Score=35.16 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=36.3
Q ss_pred cCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCC
Q 031257 19 DARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ 64 (163)
Q Consensus 19 ~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~ 64 (163)
..+|......+..++++++.|....||+|++.++.+.+.+....+.
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~ 116 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKV 116 (244)
T ss_pred cCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCC
Confidence 3456656666666689999999999999999999999977766554
No 209
>PRK10824 glutaredoxin-4; Provisional
Probab=91.95 E-value=0.67 Score=30.23 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=19.1
Q ss_pred CCcEEEEEecc----CCCCCChhhHHHHHHH
Q 031257 31 KGKVLLIVNVA----SKCGMTNSNYIELSQL 57 (163)
Q Consensus 31 ~gk~vlv~f~~----s~C~~C~~~~~~l~~~ 57 (163)
+.+.|+|+.-+ ++||+|.....-|+++
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 44567777665 5999998877666554
No 210
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=0.14 Score=37.10 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=34.6
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+++.+++.||+.||..|...-..+..+.+.+ .++.++.+..+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~ 57 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAE 57 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhh
Confidence 7789999999999999988887777777777 34788887764
No 211
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=91.43 E-value=1.1 Score=36.92 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=30.1
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEe
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is 72 (163)
+..-+-.|....||+|+.....++++....+. +..-.|.
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~--i~~~~id 154 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNPN--ITHTMID 154 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCC--ceEEEEE
Confidence 34558888899999999999999998887553 6655554
No 212
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=90.95 E-value=2.2 Score=27.67 Aligned_cols=50 Identities=14% Similarity=0.237 Sum_probs=32.6
Q ss_pred EeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCcc
Q 031257 38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEF 99 (163)
Q Consensus 38 ~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (163)
.|..++|+.|+....-|.+ +|+.+-.+++. ....+.+++.+++. ..+.++
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~l~~-~~~~~~ 52 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIG----EDGPTREELLDILS-LLEDGI 52 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCceEEEecC----CChhhHHHHHHHHH-HcCCCH
Confidence 4668999999888766654 35666666653 22356777887776 555433
No 213
>PRK10026 arsenate reductase; Provisional
Probab=90.79 E-value=2.1 Score=28.99 Aligned_cols=93 Identities=12% Similarity=0.158 Sum_probs=50.8
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC-----------ccceeee
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS-----------EFPIFEK 104 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 104 (163)
+..++.+.|.-|++.+.-|++. |+.+-.+++- ...-+.++++.++. ..+. .|.-+.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-------gi~~~~~d~~----~~ppt~~eL~~~l~-~~g~~~~~lint~~~~yr~L~- 70 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-------GTEPTIIHYL----ETPPTRDELVKLIA-DMGISVRALLRKNVEPYEELG- 70 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCCcEEEeee----CCCcCHHHHHHHHH-hCCCCHHHHHHcCCchHHHcC-
Confidence 3455689999999888666443 3444444431 12357888888887 5553 233221
Q ss_pred eecCCCcchhHHHHhHhCCCcccCCccccCeeEEEECCCCcEEEE
Q 031257 105 IDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR 149 (163)
Q Consensus 105 ~d~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~ 149 (163)
......+......+....|.+ +. +-+|++.+|.++.+
T Consensus 71 -~~~~~ls~~e~l~ll~~~P~L----IK---RPIi~~~~~a~i~R 107 (141)
T PRK10026 71 -LAEDKFTDDQLIDFMLQHPIL----IN---RPIVVTPLGTRLCR 107 (141)
T ss_pred -CCccCCCHHHHHHHHHhCccc----ee---CcEEEcCCCeEEEC
Confidence 111112222222333444433 22 44889888988876
No 214
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.79 E-value=1.5 Score=28.03 Aligned_cols=45 Identities=9% Similarity=0.192 Sum_probs=25.4
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC 92 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~ 92 (163)
+|.|--+|||+|.. ++++...+.. ...++-+.-+ ....++++++.
T Consensus 16 VVifSKs~C~~c~~----~k~ll~~~~v-~~~vvELD~~-------~~g~eiq~~l~ 60 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHR----AKELLSDLGV-NPKVVELDED-------EDGSEIQKALK 60 (104)
T ss_pred EEEEECCcCchHHH----HHHHHHhCCC-CCEEEEccCC-------CCcHHHHHHHH
Confidence 45567799999977 3444444322 2455555432 23446666665
No 215
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=2.2 Score=36.02 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=28.9
Q ss_pred cccCCcEEEEEeccCCCCCChhhH------HHHHHHHHHhcCCCeEEEEEecC
Q 031257 28 STYKGKVLLIVNVASKCGMTNSNY------IELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 28 ~~~~gk~vlv~f~~s~C~~C~~~~------~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+.-.+||++|.+-++||..|.-+. |++.++.++ .+|.|-+|
T Consensus 39 A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~------~FV~IKVD 85 (667)
T COG1331 39 AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE------NFVPVKVD 85 (667)
T ss_pred HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh------CceeeeEC
Confidence 334689999999999999997654 445555443 36666665
No 216
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=88.12 E-value=0.14 Score=37.31 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=29.9
Q ss_pred EEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEe
Q 031257 34 VLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (163)
Q Consensus 34 ~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is 72 (163)
-.++.|.++|||.|..-.+.+.++..--.+.++.+--|.
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VD 79 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVD 79 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEE
Confidence 468899999999999999999887765555565554443
No 217
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=87.28 E-value=1.1 Score=28.84 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=30.3
Q ss_pred EeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 031257 38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS 97 (163)
Q Consensus 38 ~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~ 97 (163)
.|..++|+.|++...-|.+ +|+.+-.+++. ....+.+++.+++. ..+.
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~~~~-~~~~ 50 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIV----EEPPSKEELKKWLE-KSGL 50 (111)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCceEEeccc----CCcccHHHHHHHHH-HcCC
Confidence 4567899999887765543 34555555553 12356777777776 4443
No 218
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=86.97 E-value=7 Score=25.98 Aligned_cols=51 Identities=16% Similarity=0.042 Sum_probs=37.3
Q ss_pred CCCeeecccc--CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEe
Q 031257 21 RGHEVDLSTY--KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (163)
Q Consensus 21 ~G~~~~l~~~--~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is 72 (163)
.|..++-+-. ..|.+||-|--.|-|.|...-..|.++....++. ..|.-+.
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~Iylvd 62 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVD 62 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEe
Confidence 4444543333 3479999999999999999999999999998773 3334443
No 219
>PHA03075 glutaredoxin-like protein; Provisional
Probab=86.49 E-value=0.67 Score=30.09 Aligned_cols=39 Identities=31% Similarity=0.377 Sum_probs=29.2
Q ss_pred cEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEE
Q 031257 33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAF 71 (163)
Q Consensus 33 k~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~i 71 (163)
|.+||-|--+.|+.|......|.++..+|.=.-++++++
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSf 40 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRVNILSF 40 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeee
Confidence 568999999999999999888888877764333444433
No 220
>PTZ00062 glutaredoxin; Provisional
Probab=85.32 E-value=3.3 Score=29.86 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=23.1
Q ss_pred CCcEEEEEecc----CCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVA----SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~----s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+.++++|+.-+ ++||+|+....-|++ .++.+..++++
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~ 151 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIF 151 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcC
Confidence 34577777664 578888776555543 34666666664
No 221
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=85.20 E-value=1.6 Score=29.08 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=30.6
Q ss_pred EEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 031257 37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS 97 (163)
Q Consensus 37 v~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~ 97 (163)
..|..++|+.|++...-|. ++|+.+-.+++. ....+.+++.+++. ..+.
T Consensus 3 ~iY~~~~C~~C~ka~~~L~-------~~gi~~~~idi~----~~~~~~~eL~~~l~-~~~~ 51 (131)
T PRK01655 3 TLFTSPSCTSCRKAKAWLE-------EHDIPFTERNIF----SSPLTIDEIKQILR-MTED 51 (131)
T ss_pred EEEeCCCChHHHHHHHHHH-------HcCCCcEEeecc----CChhhHHHHHHHHH-HhcC
Confidence 4556799999988765443 345666556553 12356677888876 4433
No 222
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=85.11 E-value=6.2 Score=28.25 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=41.0
Q ss_pred cEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCcccee
Q 031257 33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIF 102 (163)
Q Consensus 33 k~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (163)
.-.+..|.-..|+.|...+..+.. ....+.|..|... .+++.+..|+. +++++-..+
T Consensus 109 ~~rlalFvkd~C~~C~~~~~~l~a-----~~~~~Diylvgs~-------~dD~~Ir~WA~-~~~Idp~~V 165 (200)
T TIGR03759 109 GGRLALFVKDDCVACDARVQRLLA-----DNAPLDLYLVGSQ-------GDDERIRQWAN-RHQIDPAKV 165 (200)
T ss_pred CCeEEEEeCCCChHHHHHHHHHhc-----CCCceeEEEecCC-------CCHHHHHHHHH-HcCCCHHHe
Confidence 345666666999999988877743 3345778777543 67889999998 788865544
No 223
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=84.93 E-value=2.4 Score=27.41 Aligned_cols=49 Identities=6% Similarity=0.134 Sum_probs=31.6
Q ss_pred EeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCc
Q 031257 38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSE 98 (163)
Q Consensus 38 ~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~ 98 (163)
.|..++|+.|++...-|.+ +|+.+-.+++. ....+.+++.+++. ..+.+
T Consensus 4 iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~----~~~~~~~el~~~~~-~~~~~ 52 (115)
T cd03032 4 LYTSPSCSSCRKAKQWLEE-------HQIPFEERNLF----KQPLTKEELKEILS-LTENG 52 (115)
T ss_pred EEeCCCCHHHHHHHHHHHH-------CCCceEEEecC----CCcchHHHHHHHHH-HhcCC
Confidence 4557899999887766644 35566566553 22356778888887 55443
No 224
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=84.34 E-value=2.1 Score=27.32 Aligned_cols=48 Identities=6% Similarity=0.117 Sum_probs=30.8
Q ss_pred EEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 031257 37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK 96 (163)
Q Consensus 37 v~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~ 96 (163)
..|..++|+.|++...-|.+ +|+.+-.+++. ...-+.+++.+++. ..+
T Consensus 2 ~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~----~~p~s~~eL~~~l~-~~g 49 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYR----KDGLDAATLERWLA-KVG 49 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecc----cCCCCHHHHHHHHH-HhC
Confidence 45668999999987765543 34444444432 22457888888886 454
No 225
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=83.08 E-value=0.98 Score=33.15 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.8
Q ss_pred eEEEECCCCcEEEEeCCCCCcchhhhc
Q 031257 136 AKFLVDKNGQVVDRYYPTTSLLSLEVI 162 (163)
Q Consensus 136 ~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (163)
..||||+.|+|++...|..+++++++.
T Consensus 250 yV~L~D~s~kIRW~g~G~aTp~Eve~L 276 (287)
T KOG4614|consen 250 YVLLLDKSGKIRWQGFGTATPEEVEQL 276 (287)
T ss_pred EEEEEccCceEEEeecCCCCHHHHHHH
Confidence 469999999999999999999888764
No 226
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=82.75 E-value=5.3 Score=26.50 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=29.8
Q ss_pred cEEEEEeccC--CCC-CChh-hHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 33 KVLLIVNVAS--KCG-MTNS-NYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 33 k~vlv~f~~s--~C~-~C~~-~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
++.+|.|..+ .|. -+.. ....|.+++++|+++++.++.++.+
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~ 66 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAG 66 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCc
Confidence 4667777654 343 2433 3688899999999887888888764
No 227
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=82.60 E-value=4.8 Score=27.65 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=20.6
Q ss_pred EEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEec
Q 031257 35 LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 35 vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
+++.|..............++++.++++++ +.++.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~ 135 (184)
T PF13848_consen 98 VLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDA 135 (184)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEET
T ss_pred EEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeeh
Confidence 444444444444555556666666666554 55555553
No 228
>PRK12559 transcriptional regulator Spx; Provisional
Probab=82.38 E-value=3.3 Score=27.54 Aligned_cols=50 Identities=6% Similarity=0.108 Sum_probs=31.2
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS 97 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~ 97 (163)
+..|..++|+.|++...-|.+ +|+.+-.+++. ....+.+++..++. ..+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~gi~~~~~di~----~~~~s~~el~~~l~-~~~~ 51 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE-------NQIDYTEKNIV----SNSMTVDELKSILR-LTEE 51 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCeEEEEee----CCcCCHHHHHHHHH-HcCC
Confidence 345567999999987655533 34555555443 22467888888886 4333
No 229
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.77 E-value=4.5 Score=33.25 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=29.9
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEe
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is 72 (163)
.++.-+-.|....||+|+.....++++..+.+. +..-.+.
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~--i~~~~id 155 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNPN--ISHTMID 155 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC--ceEEEEE
Confidence 344568888899999999988888888887653 5544444
No 230
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=78.26 E-value=3.8 Score=30.52 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=26.3
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD 63 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~ 63 (163)
.||+.+++.-+-|||+|..+-=.|--...+|-.
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 589999999999999999987666666665543
No 231
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=77.09 E-value=9.2 Score=26.59 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=44.8
Q ss_pred ccccCCCcccceEEec-CCCCeeecccc---CCcEEEEEeccCC-CCCChhhHHHHHHHH-------HHhcCC------C
Q 031257 4 QFIQNPESIFDLSVKD-ARGHEVDLSTY---KGKVLLIVNVASK-CGMTNSNYIELSQLY-------DKYKDQ------G 65 (163)
Q Consensus 4 ~~~~~~~~~p~f~l~~-~~G~~~~l~~~---~gk~vlv~f~~s~-C~~C~~~~~~l~~~~-------~~~~~~------~ 65 (163)
..+.+|..+|+..++. .||.++.|.+. .|++-|+.|-+.. .+.+...+..|.+.. +.|... -
T Consensus 28 ~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~ 107 (169)
T PF07976_consen 28 GGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSV 107 (169)
T ss_dssp TTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSS
T ss_pred cCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCe
Confidence 4577899999999877 59999999884 6899888888654 456666666666544 344332 2
Q ss_pred eEEEEEec
Q 031257 66 LEILAFPC 73 (163)
Q Consensus 66 ~~ii~is~ 73 (163)
+.++.|..
T Consensus 108 ~~~~~I~~ 115 (169)
T PF07976_consen 108 FDVLLIHS 115 (169)
T ss_dssp EEEEEEES
T ss_pred eEEEEEec
Confidence 78888874
No 232
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=76.76 E-value=9.5 Score=25.48 Aligned_cols=43 Identities=14% Similarity=-0.006 Sum_probs=35.1
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
..|.++|-|--.|-|.|...-..|.+++.+.+.. ..|..+.++
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~ 61 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDID 61 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcc
Confidence 4689999999999999999999999999998875 566666654
No 233
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=76.60 E-value=7.1 Score=26.00 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=31.7
Q ss_pred EeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCcc
Q 031257 38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEF 99 (163)
Q Consensus 38 ~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (163)
.|..++|+.|++...-| .++|+.+-.+++. ...-+.+++..++. ..+.++
T Consensus 4 iY~~~~C~~crkA~~~L-------~~~~i~~~~~d~~----~~~~s~~eL~~~l~-~~~~~~ 53 (132)
T PRK13344 4 IYTISSCTSCKKAKTWL-------NAHQLSYKEQNLG----KEPLTKEEILAILT-KTENGI 53 (132)
T ss_pred EEeCCCCHHHHHHHHHH-------HHcCCCeEEEECC----CCCCCHHHHHHHHH-HhCCCH
Confidence 45578999998866444 3345566556553 23467888888887 555443
No 234
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=75.47 E-value=7.3 Score=28.10 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=36.4
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEec
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
.|-||+|..+.-.-|.|......|+.+..+|+. +.||-|..
T Consensus 110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~a 150 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIPA 150 (240)
T ss_pred CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEeccc
Confidence 467999999999999999999999999999987 77777754
No 235
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=74.46 E-value=16 Score=30.40 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=28.6
Q ss_pred cccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEe
Q 031257 28 STYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (163)
Q Consensus 28 ~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is 72 (163)
.++++.+.|+.|+...|..|.+...-|.++. +++++ +.+....
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~-i~~~~~~ 404 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEK-LNSEAVN 404 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCc-EEEEEec
Confidence 3456667888888888999977766666665 44444 5554443
No 236
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=73.82 E-value=5.1 Score=27.85 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=30.6
Q ss_pred EEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEec
Q 031257 35 LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 35 vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
+|.+|+..-||+|-...+.|.++.+++.+-.+...-+.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 467777889999999999999999999554455555554
No 237
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=72.14 E-value=5.8 Score=23.78 Aligned_cols=52 Identities=10% Similarity=0.273 Sum_probs=35.2
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCcccee
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIF 102 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (163)
|+.|.-..|+.|...-..|.++..+ .++.+-.|+++ +.++ +. ++++..-|++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~--------~d~~---l~-~~Y~~~IPVl 53 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE---FPFELEEVDID--------EDPE---LF-EKYGYRIPVL 53 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT---STCEEEEEETT--------TTHH---HH-HHSCTSTSEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh---cCceEEEEECC--------CCHH---HH-HHhcCCCCEE
Confidence 5667788999999888888776543 34888888875 2333 22 3677777776
No 238
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=70.58 E-value=8.6 Score=30.82 Aligned_cols=32 Identities=3% Similarity=0.132 Sum_probs=22.1
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
|+.|..+|||+|...-.-|++ +|+.+-.++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~gi~~~~idi~ 35 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------NDIPFTQISLD 35 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCeEEEECC
Confidence 667788999999766544433 45666667664
No 239
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=69.59 E-value=34 Score=23.67 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=32.9
Q ss_pred CCcccceEEec-CCCCeeecccc---CCcEEEEEeccCC-CCCChhhHHHHHH
Q 031257 9 PESIFDLSVKD-ARGHEVDLSTY---KGKVLLIVNVASK-CGMTNSNYIELSQ 56 (163)
Q Consensus 9 ~~~~p~f~l~~-~~G~~~~l~~~---~gk~vlv~f~~s~-C~~C~~~~~~l~~ 56 (163)
|..+|++.+.. .||.++.|.+. .|++-|+.|-+.- ++..+..+..+.+
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~~~~~~~l~~~~~ 53 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAPAQQKSRLTQLCD 53 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCchhHHHHHHHHHH
Confidence 45678888777 49999998774 5799999998754 4444444444443
No 240
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=69.28 E-value=7.1 Score=27.19 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.5
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhc
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYK 62 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~ 62 (163)
|.+|+...||+|-...+.|.++.+++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 556778899999999999999999984
No 241
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=66.01 E-value=19 Score=25.95 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=26.8
Q ss_pred EEEeccC-CCCCChhhHHHHHHHHHHhcCCCeEEEEEecCC
Q 031257 36 LIVNVAS-KCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQ 75 (163)
Q Consensus 36 lv~f~~s-~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~ 75 (163)
||..|.| -|..|...-..|.++.++ .++-.++..+|.
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVDY 38 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVDY 38 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-ST
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCCc
Confidence 4666654 799999999999999988 258899999863
No 242
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=65.75 E-value=16 Score=24.13 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 48 NSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 48 ~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
-.+|-++....+.++++|+.+.-.++.
T Consensus 23 d~eL~~~a~~~~~Lk~~gv~v~RyNL~ 49 (123)
T PF06953_consen 23 DPELVRFAADLDWLKEQGVEVERYNLA 49 (123)
T ss_dssp -HHHHHHHHHHHHHHHTT-EEEEEETT
T ss_pred CHHHHHHHHHHHHHHhCCceEEEEccc
Confidence 457788888888888899999998875
No 243
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=65.69 E-value=20 Score=25.71 Aligned_cols=41 Identities=7% Similarity=-0.056 Sum_probs=35.2
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEec
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
+..-||+.||-....-|+-.-..|..+++.+-+ ..++-|++
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvna 123 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNA 123 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEec
Confidence 345799999999999999999999999998865 78898875
No 244
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=65.26 E-value=46 Score=28.52 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCCeEEEEEecC
Q 031257 52 IELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 52 ~~l~~~~~~~~~~~~~ii~is~d 74 (163)
..+.+|+.+.++.|++++-++..
T Consensus 561 ~GVAkLyt~Ik~NGYk~lyLSAR 583 (738)
T KOG2116|consen 561 TGVAKLYTKIKENGYKILYLSAR 583 (738)
T ss_pred hhHHHHHHHHHhCCeeEEEEehh
Confidence 34678889989999999999874
No 245
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=63.07 E-value=55 Score=24.79 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=45.8
Q ss_pred CCcccceEEecCCCCeeeccccCC-cEEEEEeccCCCCCChhhHHHHHHHHHHhcC--CCeEEEEEecCCCCCCCCCCHH
Q 031257 9 PESIFDLSVKDARGHEVDLSTYKG-KVLLIVNVASKCGMTNSNYIELSQLYDKYKD--QGLEILAFPCNQFGEEEPGSND 85 (163)
Q Consensus 9 ~~~~p~f~l~~~~G~~~~l~~~~g-k~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~--~~~~ii~is~d~~~~~~~~~~~ 85 (163)
=...|-|++.|.+|.++-.+.-.| +.+-++|.- -.....-|.++.++-++ .+++|..|+++
T Consensus 79 L~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~-----qedA~afL~~lk~~~p~l~~~~kV~pvsL~----------- 142 (270)
T TIGR00995 79 LAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFR-----QEDAEAFLAQLRKRKPEVGSQAKVVPITLD----------- 142 (270)
T ss_pred hcCCceEEEEcCCCCeEEEECCCCCceEEEEECC-----HHHHHHHHHHHHhhCccccCCceEEEEEHH-----------
Confidence 347899999999999987775544 555443321 11122334444444333 36899999875
Q ss_pred HHHHHHHhhcCCcccee
Q 031257 86 QIADFVCTRFKSEFPIF 102 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~~~ 102 (163)
.+.+.. ..++.|.++
T Consensus 143 ~vYkl~--~e~l~F~fi 157 (270)
T TIGR00995 143 QVYKLK--VEGIGFRFL 157 (270)
T ss_pred HHHHHh--hcCccEEEe
Confidence 334443 345888877
No 246
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=61.91 E-value=48 Score=26.84 Aligned_cols=32 Identities=9% Similarity=-0.029 Sum_probs=24.8
Q ss_pred ccccCeeEEEECCCCcEEEEeCCCCCcchhhh
Q 031257 130 DIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161 (163)
Q Consensus 130 ~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (163)
.++.-|..|+|+.+|+-+.+..|....++|..
T Consensus 74 p~v~vPs~ffIg~sGtpLevitg~v~adeL~~ 105 (506)
T KOG2507|consen 74 PYVSVPSIFFIGFSGTPLEVITGFVTADELAS 105 (506)
T ss_pred ccccccceeeecCCCceeEEeeccccHHHHHH
Confidence 33334499999999999999999888766643
No 247
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=52.68 E-value=18 Score=25.27 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=24.5
Q ss_pred EeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEE
Q 031257 38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAF 71 (163)
Q Consensus 38 ~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~i 71 (163)
.|..+.|+.|-..-|.+.++..++..+ +.+-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~-i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK-IEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT-EEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc-EEEEEE
Confidence 477899999999999999999999876 444333
No 248
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=51.93 E-value=36 Score=21.83 Aligned_cols=48 Identities=10% Similarity=0.287 Sum_probs=31.1
Q ss_pred EeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 031257 38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS 97 (163)
Q Consensus 38 ~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~ 97 (163)
.|..+.|.-|++.+.-|.+ .|+.+..+++- ...-+.+++..+++ ..+.
T Consensus 3 iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~----~~p~t~~el~~~l~-~~g~ 50 (114)
T TIGR00014 3 IYHNPRCSKSRNTLALLED-------KGIEPEVVKYL----KNPPTKSELEAIFA-KLGL 50 (114)
T ss_pred EEECCCCHHHHHHHHHHHH-------CCCCeEEEecc----CCCcCHHHHHHHHH-HcCC
Confidence 4557899999988766644 24455455442 23467888888887 5554
No 249
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=50.78 E-value=41 Score=21.69 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=29.0
Q ss_pred EEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 031257 37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK 96 (163)
Q Consensus 37 v~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~ 96 (163)
..|..+.|+.|++...-|.+ +|+.+-.+++- ...-+.++++.++. ..+
T Consensus 3 ~iy~~p~C~~crkA~~~L~~-------~gi~~~~~d~~----~~p~s~~eL~~~l~-~~g 50 (113)
T cd03033 3 IFYEKPGCANNARQKALLEA-------AGHEVEVRDLL----TEPWTAETLRPFFG-DLP 50 (113)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEeehh----cCCCCHHHHHHHHH-HcC
Confidence 34557899999977654433 33444444432 12357788888887 444
No 250
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.63 E-value=1e+02 Score=24.97 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=40.8
Q ss_pred CCCeeeccccCCcEEEEEeccCCCC----CChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 031257 21 RGHEVDLSTYKGKVLLIVNVASKCG----MTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK 96 (163)
Q Consensus 21 ~G~~~~l~~~~gk~vlv~f~~s~C~----~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~ 96 (163)
|...-.+.--++|+.||.|.+---. .|. +++..|+.+|....-|+.|.++.- .-+.++..+. +.+
T Consensus 88 dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~-------KlA~y~kkkG~K~~LvcaDTFRag---AfDQLkqnA~-k~~ 156 (483)
T KOG0780|consen 88 DPGKSALQPKKGKPSVIMFVGLQGSGKTTTCT-------KLAYYYKKKGYKVALVCADTFRAG---AFDQLKQNAT-KAR 156 (483)
T ss_pred CCCCcccccccCCCcEEEEEeccCCCcceeHH-------HHHHHHHhcCCceeEEeecccccc---hHHHHHHHhH-hhC
Confidence 3333334444789999999865432 343 455556677888888888866543 3445555554 445
Q ss_pred Ccc
Q 031257 97 SEF 99 (163)
Q Consensus 97 ~~~ 99 (163)
++|
T Consensus 157 iP~ 159 (483)
T KOG0780|consen 157 VPF 159 (483)
T ss_pred Cee
Confidence 543
No 251
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.45 E-value=85 Score=24.17 Aligned_cols=106 Identities=17% Similarity=0.307 Sum_probs=56.4
Q ss_pred eccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeee
Q 031257 26 DLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKI 105 (163)
Q Consensus 26 ~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (163)
.+.+.+|+.+||- +..-..-+ .+..+|.++|..++-.+++ .+..++..+.++ +.+.-+.+. +
T Consensus 32 ~~k~v~g~~vLIT--Ggg~GlGr-------~ialefa~rg~~~vl~Din------~~~~~etv~~~~-~~g~~~~y~--c 93 (300)
T KOG1201|consen 32 PLKSVSGEIVLIT--GGGSGLGR-------LIALEFAKRGAKLVLWDIN------KQGNEETVKEIR-KIGEAKAYT--C 93 (300)
T ss_pred chhhccCCEEEEe--CCCchHHH-------HHHHHHHHhCCeEEEEecc------ccchHHHHHHHH-hcCceeEEE--e
Confidence 4455667777663 33333333 2444555556656555554 245555555554 334333344 5
Q ss_pred ecCCCcchhHHHH---hHhCCCcccCCccccCeeEEEECCCCcEEEEeCCCCCcchhhh
Q 031257 106 DVNGEHASPLYKL---LKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEV 161 (163)
Q Consensus 106 d~~~~~~~~~~~~---~~~~~~~~~~~~ip~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (163)
|.... .+.+.. ..++.+ . -.+||+.-|.+-.+..-..+.+++++
T Consensus 94 dis~~--eei~~~a~~Vk~e~G-----~-----V~ILVNNAGI~~~~~ll~~~d~ei~k 140 (300)
T KOG1201|consen 94 DISDR--EEIYRLAKKVKKEVG-----D-----VDILVNNAGIVTGKKLLDCSDEEIQK 140 (300)
T ss_pred cCCCH--HHHHHHHHHHHHhcC-----C-----ceEEEeccccccCCCccCCCHHHHHH
Confidence 55442 223332 223322 2 46999988988777666667777765
No 252
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.40 E-value=15 Score=26.08 Aligned_cols=37 Identities=11% Similarity=0.228 Sum_probs=30.7
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEe
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is 72 (163)
.+.||...|+.-.....+++++...+++.|+.|+.-.
T Consensus 42 Fv~~~~~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTa 78 (218)
T COG1535 42 FVSPWGENCPLMEQLIANIAKLRIWCKQAGIPVVYTA 78 (218)
T ss_pred hcCCCCCCCccHHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4568888899887888999999999998899887654
No 253
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=48.93 E-value=69 Score=20.43 Aligned_cols=48 Identities=10% Similarity=0.287 Sum_probs=30.4
Q ss_pred EeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 031257 38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS 97 (163)
Q Consensus 38 ~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~ 97 (163)
.|..+.|.-|++.+.-|++ +++.+..+++- ...-+.+++..++. ..+.
T Consensus 3 iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~----~~~~t~~el~~~l~-~~~~ 50 (112)
T cd03034 3 IYHNPRCSKSRNALALLEE-------AGIEPEIVEYL----KTPPTAAELRELLA-KLGI 50 (112)
T ss_pred EEECCCCHHHHHHHHHHHH-------CCCCeEEEecc----cCCcCHHHHHHHHH-HcCC
Confidence 4557899999887655533 34445555442 23457888888887 5553
No 254
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=47.53 E-value=55 Score=25.54 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=36.0
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEec
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
.|||+++.|-...-+.++..+..+++.+++.--.++.++++..
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 4899998888877788999999999998886656788988874
No 255
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=47.47 E-value=19 Score=20.57 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=18.5
Q ss_pred EeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEec
Q 031257 38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 38 ~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
.|...+||.|.+..-.|.+. +..++++.++.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~ 33 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-----GITVELREVEL 33 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-----CCCcEEEEeCC
Confidence 35578999997765444332 33356665543
No 256
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=47.32 E-value=1.1e+02 Score=23.00 Aligned_cols=71 Identities=27% Similarity=0.377 Sum_probs=42.7
Q ss_pred cCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeee-cCCCcchhHHHHh
Q 031257 41 ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID-VNGEHASPLYKLL 119 (163)
Q Consensus 41 ~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~ 119 (163)
+..|.-. .-++.+..+|.++|+.+|-|.-++ -....++.+.+. .....|-++ +| ..-......|+.+
T Consensus 60 ~rGtGKS----SlVkall~~y~~~GLRlIev~k~~-----L~~l~~l~~~l~-~~~~kFIlf--~DDLsFe~~d~~yk~L 127 (249)
T PF05673_consen 60 ARGTGKS----SLVKALLNEYADQGLRLIEVSKED-----LGDLPELLDLLR-DRPYKFILF--CDDLSFEEGDTEYKAL 127 (249)
T ss_pred CCCCCHH----HHHHHHHHHHhhcCceEEEECHHH-----hccHHHHHHHHh-cCCCCEEEE--ecCCCCCCCcHHHHHH
Confidence 4455542 235567788888899999997432 245556666665 455566666 54 3334444556666
Q ss_pred HhCC
Q 031257 120 KSGK 123 (163)
Q Consensus 120 ~~~~ 123 (163)
+...
T Consensus 128 Ks~L 131 (249)
T PF05673_consen 128 KSVL 131 (249)
T ss_pred HHHh
Confidence 5443
No 257
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=46.79 E-value=89 Score=21.10 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=27.1
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEe
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is 72 (163)
.++-+|.+|..-|+.|.....-|.+.- ....+.+..+.
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D---~~~~i~f~~~q 43 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRD---QGGRIRFAALQ 43 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhc---cCCcEEEEecc
Confidence 467888899999999988665554432 33457777775
No 258
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=46.48 E-value=58 Score=18.87 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=27.2
Q ss_pred CCCeeeccccCCcEEEEEecc--CCCCCChhhH-HHHHH-HHHHhcC
Q 031257 21 RGHEVDLSTYKGKVLLIVNVA--SKCGMTNSNY-IELSQ-LYDKYKD 63 (163)
Q Consensus 21 ~G~~~~l~~~~gk~vlv~f~~--s~C~~C~~~~-~~l~~-~~~~~~~ 63 (163)
+|-.+.+-++++..+.|.|-+ +.||.....+ ..+++ +.+.+++
T Consensus 15 dGGdv~lv~v~~~~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~ 61 (68)
T PF01106_consen 15 DGGDVELVDVDDGVVYVRLTGACSGCPSSDMTLKQGIEQALREAVPE 61 (68)
T ss_dssp TTEEEEEEEEETTEEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT
T ss_pred cCCcEEEEEecCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 777889999988888888864 3456555555 33333 3334443
No 259
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=46.43 E-value=1.1e+02 Score=24.88 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=8.3
Q ss_pred eEEEECCCCcEE
Q 031257 136 AKFLVDKNGQVV 147 (163)
Q Consensus 136 ~~~lid~~G~i~ 147 (163)
+..++|++|+++
T Consensus 247 R~~vvd~~G~~l 258 (446)
T PRK14324 247 RLVVVDEKGEIV 258 (446)
T ss_pred eEEEECCCCCEe
Confidence 456777777765
No 260
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=45.35 E-value=95 Score=21.83 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=43.8
Q ss_pred CC-cEEEEEeccCCCCC-ChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccce
Q 031257 31 KG-KVLLIVNVASKCGM-TNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPI 101 (163)
Q Consensus 31 ~g-k~vlv~f~~s~C~~-C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (163)
+| |.+++++=.|--+. -....|++++...+.++.|+.++-+|-+ +...++.++. +.+++|-.
T Consensus 26 ~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn--------~e~RV~~~~~-~l~v~fi~ 89 (175)
T COG2179 26 HGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNN--------KESRVARAAE-KLGVPFIY 89 (175)
T ss_pred cCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCC--------CHHHHHhhhh-hcCCceee
Confidence 34 67888888876664 4455689999999999999999988832 4445555543 66666543
No 261
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=44.43 E-value=28 Score=23.50 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=29.1
Q ss_pred EEEEeccCCCCCChh-------hHHHHHHHHHHhcCCCeEEEEEec
Q 031257 35 LLIVNVASKCGMTNS-------NYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 35 vlv~f~~s~C~~C~~-------~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
.=|.|.+|.|-.|.. ...+++++.++|...++.++-=+.
T Consensus 31 aevvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~a 76 (150)
T PF04723_consen 31 AEVVFSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGAA 76 (150)
T ss_pred ceEEEEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecCC
Confidence 456788999999975 467888899999887766554443
No 262
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=43.70 E-value=61 Score=20.52 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=23.2
Q ss_pred eccCC-CCC--Ch---hhHHHHHHHHHHhcCCCeEEEEEe
Q 031257 39 NVASK-CGM--TN---SNYIELSQLYDKYKDQGLEILAFP 72 (163)
Q Consensus 39 f~~s~-C~~--C~---~~~~~l~~~~~~~~~~~~~ii~is 72 (163)
.|..| +|. |. ..+.+|++-.+++++.=|+++|++
T Consensus 45 yW~mwklP~f~~~d~~~Vl~ei~~C~~~~p~~YVRliG~D 84 (99)
T cd03527 45 YWTMWKLPMFGCTDPAQVLREIEACRKAYPDHYVRVVGFD 84 (99)
T ss_pred EEeeccCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEe
Confidence 45554 454 65 446666777778877669999996
No 263
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=43.01 E-value=55 Score=20.05 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=21.2
Q ss_pred CCCC--h---hhHHHHHHHHHHhcCCCeEEEEEe
Q 031257 44 CGMT--N---SNYIELSQLYDKYKDQGLEILAFP 72 (163)
Q Consensus 44 C~~C--~---~~~~~l~~~~~~~~~~~~~ii~is 72 (163)
|..| . ..+.+|++-.++|++.=++++|++
T Consensus 36 ~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D 69 (84)
T cd00307 36 CGPIEGRSEAQVLAALEACLAEHPGEYVRLIGID 69 (84)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEe
Confidence 5566 3 346777777778887669999996
No 264
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=42.54 E-value=1.2e+02 Score=23.08 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=30.0
Q ss_pred CcccceEEecCCCCeeeccccC--CcEEEEEeccCCCCCChhhHHH-HHHHHHHhc--CCCeEEEEEecC
Q 031257 10 ESIFDLSVKDARGHEVDLSTYK--GKVLLIVNVASKCGMTNSNYIE-LSQLYDKYK--DQGLEILAFPCN 74 (163)
Q Consensus 10 ~~~p~f~l~~~~G~~~~l~~~~--gk~vlv~f~~s~C~~C~~~~~~-l~~~~~~~~--~~~~~ii~is~d 74 (163)
..+|-|.++|.+|+++-.+.-. ++.+..+|+ |...... +.++.+..+ ..+++|..++++
T Consensus 73 ~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~ 136 (274)
T PF04278_consen 73 AGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF------SQQDAEAFLAQLKKSNPELASGAKVVPVSLG 136 (274)
T ss_dssp TTSEEEEEE-TT--B-----TTS--SEEEEEES-------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHH
T ss_pred cCceEEEEECCCCCEEEeccCCCCCceEEEEEe------cHHHHHHHHHHHhhhCccccCceEEEEecHH
Confidence 4579999999999998776654 555655554 4454433 344444433 246999999874
No 265
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=42.13 E-value=63 Score=21.02 Aligned_cols=51 Identities=8% Similarity=0.189 Sum_probs=31.2
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCc
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSE 98 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~ 98 (163)
+-.|+.+.|.-|++...-|++.-- .+.++-+..+ .-+.+++.++++ ..+.+
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi-----~~~~~~y~~~------~~s~~eL~~~l~-~~g~~ 53 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGI-----EYTFIDYLKT------PPSREELKKILS-KLGDG 53 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC-----CcEEEEeecC------CCCHHHHHHHHH-HcCcc
Confidence 345568899999888766644321 1334444322 357888888887 56643
No 266
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=41.23 E-value=1.9e+02 Score=23.36 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=8.7
Q ss_pred eEEEECCCCcEEE
Q 031257 136 AKFLVDKNGQVVD 148 (163)
Q Consensus 136 ~~~lid~~G~i~~ 148 (163)
+..+||.+|+++.
T Consensus 243 Rl~~vd~~G~~i~ 255 (443)
T PRK10887 243 RVIMVDHLGNLVD 255 (443)
T ss_pred eEEEECCCCcEeC
Confidence 4567777777654
No 267
>PRK10853 putative reductase; Provisional
Probab=40.79 E-value=61 Score=21.05 Aligned_cols=48 Identities=10% Similarity=0.140 Sum_probs=30.5
Q ss_pred EEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 031257 37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK 96 (163)
Q Consensus 37 v~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~ 96 (163)
..|..+.|.-|++.+.-|.+ +|+.+-.+++- ...-+.+++..++. +.+
T Consensus 3 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~d~~----k~p~s~~eL~~~l~-~~g 50 (118)
T PRK10853 3 TLYGIKNCDTIKKARRWLEA-------QGIDYRFHDYR----VDGLDSELLQGFID-ELG 50 (118)
T ss_pred EEEcCCCCHHHHHHHHHHHH-------cCCCcEEeehc----cCCcCHHHHHHHHH-HcC
Confidence 34557899999987766543 34555555542 12357788888886 454
No 268
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=40.58 E-value=40 Score=21.79 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=22.1
Q ss_pred eeccccCCcEEEEEeccCCCCCChhhHHHH
Q 031257 25 VDLSTYKGKVLLIVNVASKCGMTNSNYIEL 54 (163)
Q Consensus 25 ~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l 54 (163)
+.+.+..|..++|.=-.+-|+.|+-.+...
T Consensus 59 l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~ 88 (118)
T PF14427_consen 59 LPLNQVPGDRMLIDGQYPPCNSCKGKMRRA 88 (118)
T ss_pred cCccccCCceEEEeeecCCCchhHHHHHHh
Confidence 345555688888888889999998765433
No 269
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=40.32 E-value=17 Score=23.04 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=22.5
Q ss_pred eccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEe
Q 031257 39 NVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (163)
Q Consensus 39 f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is 72 (163)
||..+||.|......+.+.- ....+.++.+.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d---~~~~l~~~~~~ 32 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD---RGGRLRFVDIQ 32 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC---CCCCEEEEECC
Confidence 67789999999988777762 12347777773
No 270
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=40.30 E-value=1.6e+02 Score=23.91 Aligned_cols=13 Identities=54% Similarity=0.710 Sum_probs=8.8
Q ss_pred eEEEECCCCcEEE
Q 031257 136 AKFLVDKNGQVVD 148 (163)
Q Consensus 136 ~~~lid~~G~i~~ 148 (163)
+..+||++|+++.
T Consensus 247 R~~~vd~~G~~l~ 259 (448)
T PRK14318 247 RCLAVDANGNVVD 259 (448)
T ss_pred eEEEECCCCcEeC
Confidence 4677788777653
No 271
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=39.47 E-value=1.3e+02 Score=20.89 Aligned_cols=24 Identities=8% Similarity=-0.022 Sum_probs=20.9
Q ss_pred eccCCCCCChhhHHHHHHHHHHhc
Q 031257 39 NVASKCGMTNSNYIELSQLYDKYK 62 (163)
Q Consensus 39 f~~s~C~~C~~~~~~l~~~~~~~~ 62 (163)
|+..-||+|-...+.|.++.++++
T Consensus 4 ~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 4 WSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EecCcCccHHHHHHHHHHHHHhCC
Confidence 445679999999999999999985
No 272
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=39.41 E-value=2e+02 Score=23.19 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=7.2
Q ss_pred eEEEECCCCcEE
Q 031257 136 AKFLVDKNGQVV 147 (163)
Q Consensus 136 ~~~lid~~G~i~ 147 (163)
+..++|.+|+++
T Consensus 245 R~~~vd~~G~~i 256 (448)
T PRK14316 245 RLIAVDENGNIV 256 (448)
T ss_pred eEEEECCCCCEe
Confidence 456667666654
No 273
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=38.87 E-value=39 Score=22.80 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=28.3
Q ss_pred EEEEEeccCCCCCChh-------hHHHHHHHHHHhcCCCeEEEEEe
Q 031257 34 VLLIVNVASKCGMTNS-------NYIELSQLYDKYKDQGLEILAFP 72 (163)
Q Consensus 34 ~vlv~f~~s~C~~C~~-------~~~~l~~~~~~~~~~~~~ii~is 72 (163)
..=|.|-+|.|-.|.. ...+++++..+|...++.++-=+
T Consensus 31 gaevvfs~TECfVctaAGAMDLEnQ~Rvk~~aEk~g~eNvvVllGa 76 (154)
T PRK13265 31 GAEVVFSSTECFVUTAAGAMDLENQKRVKDLAEKFGAENVVVILGA 76 (154)
T ss_pred CceEEEEeeeEEEeecccccchHHHHHHHHHHHhcCCccEEEEecc
Confidence 3456788999998875 46788888999887766554433
No 274
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=38.85 E-value=1.7e+02 Score=23.69 Aligned_cols=13 Identities=46% Similarity=0.751 Sum_probs=8.2
Q ss_pred eEEEECCCCcEEE
Q 031257 136 AKFLVDKNGQVVD 148 (163)
Q Consensus 136 ~~~lid~~G~i~~ 148 (163)
+..+||++|+++.
T Consensus 244 R~~~vd~~G~~l~ 256 (443)
T TIGR01455 244 RVLAVDANGRIVD 256 (443)
T ss_pred eEEEECCCCcEeC
Confidence 4566777776653
No 275
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=38.80 E-value=1.9e+02 Score=23.35 Aligned_cols=13 Identities=23% Similarity=0.629 Sum_probs=8.8
Q ss_pred eEEEECCCCcEEE
Q 031257 136 AKFLVDKNGQVVD 148 (163)
Q Consensus 136 ~~~lid~~G~i~~ 148 (163)
+..++|.+|+++.
T Consensus 245 R~~~vD~~G~~i~ 257 (440)
T PRK14323 245 RALFVDRRGRLFH 257 (440)
T ss_pred eeEEECCCCcEeC
Confidence 4567777776654
No 276
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=38.61 E-value=2.1e+02 Score=23.03 Aligned_cols=13 Identities=38% Similarity=0.670 Sum_probs=8.4
Q ss_pred eEEEECCCCcEEE
Q 031257 136 AKFLVDKNGQVVD 148 (163)
Q Consensus 136 ~~~lid~~G~i~~ 148 (163)
+..+||.+|+++.
T Consensus 241 R~~~vd~~G~~i~ 253 (434)
T cd05802 241 RVIAVDEKGNIVD 253 (434)
T ss_pred eEEEECCCCCEeC
Confidence 4566777776653
No 277
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=38.50 E-value=1.4e+02 Score=24.15 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=7.3
Q ss_pred eEEEECCCCcEE
Q 031257 136 AKFLVDKNGQVV 147 (163)
Q Consensus 136 ~~~lid~~G~i~ 147 (163)
+..++|++|+++
T Consensus 238 R~~ivd~~G~~l 249 (443)
T cd03089 238 RLGVVDEKGEII 249 (443)
T ss_pred eeEEECCCCcEe
Confidence 456667776654
No 278
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=38.48 E-value=91 Score=20.75 Aligned_cols=38 Identities=18% Similarity=0.440 Sum_probs=28.0
Q ss_pred HHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCcccee
Q 031257 56 QLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIF 102 (163)
Q Consensus 56 ~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (163)
++.++++++ +++++++.. .+.+.+.+.++ +++..|-.+
T Consensus 16 dVi~~~~d~-f~v~~Lsa~-------~n~~~L~~q~~-~f~p~~v~i 53 (129)
T PF02670_consen 16 DVIRKHPDK-FEVVALSAG-------SNIEKLAEQAR-EFKPKYVVI 53 (129)
T ss_dssp HHHHHCTTT-EEEEEEEES-------STHHHHHHHHH-HHT-SEEEE
T ss_pred HHHHhCCCc-eEEEEEEcC-------CCHHHHHHHHH-HhCCCEEEE
Confidence 455666665 999999986 57888888887 778877776
No 279
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=38.24 E-value=38 Score=23.37 Aligned_cols=51 Identities=27% Similarity=0.326 Sum_probs=34.6
Q ss_pred EEecCCCCeeeccccCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 16 SVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 16 ~l~~~~G~~~~l~~~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
.+.|+||. ++.+|..|...-+ +-..|+ -+...++++++.++|+.++-++..
T Consensus 2 VvsDIDGT-iT~SD~~G~i~~~-~G~d~~------h~g~~~l~~~i~~~GY~ilYlTaR 52 (157)
T PF08235_consen 2 VVSDIDGT-ITKSDVLGHILPI-LGKDWT------HPGAAELYRKIADNGYKILYLTAR 52 (157)
T ss_pred EEEeccCC-cCccchhhhhhhc-cCchhh------hhcHHHHHHHHHHCCeEEEEECcC
Confidence 35678888 7788876643222 222344 344667888888999999999864
No 280
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=37.77 E-value=1.3e+02 Score=20.47 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=24.4
Q ss_pred EEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 34 VLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 34 ~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
.-++.+..+.|.=|..-+..|+ .+|+.|=.+..|
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk-------~~Gf~Vk~~~~~ 59 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK-------ANGFEVKVVETD 59 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH-------hCCcEEEEeecC
Confidence 3467777899999987776663 457887777653
No 281
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=37.69 E-value=1.2e+02 Score=20.57 Aligned_cols=25 Identities=8% Similarity=-0.130 Sum_probs=15.3
Q ss_pred CCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 43 KCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 43 ~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+||+|...-.-|++ .++.+--++++
T Consensus 15 t~~~C~~ak~iL~~-------~~V~~~e~DVs 39 (147)
T cd03031 15 TFEDCNNVRAILES-------FRVKFDERDVS 39 (147)
T ss_pred cChhHHHHHHHHHH-------CCCcEEEEECC
Confidence 89999665544433 24566666653
No 282
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=37.46 E-value=2.2e+02 Score=23.03 Aligned_cols=13 Identities=46% Similarity=0.792 Sum_probs=8.7
Q ss_pred eEEEECCCCcEEE
Q 031257 136 AKFLVDKNGQVVD 148 (163)
Q Consensus 136 ~~~lid~~G~i~~ 148 (163)
+..+||.+|+++.
T Consensus 248 R~~ivd~~G~~i~ 260 (448)
T PRK14315 248 RVIIVDEKGHVVD 260 (448)
T ss_pred eEEEEcCCCcEeC
Confidence 4567777776654
No 283
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.34 E-value=46 Score=22.80 Aligned_cols=25 Identities=8% Similarity=0.084 Sum_probs=19.7
Q ss_pred eEEEECCCCcEEEEeCCCCCcchhh
Q 031257 136 AKFLVDKNGQVVDRYYPTTSLLSLE 160 (163)
Q Consensus 136 ~~~lid~~G~i~~~~~g~~~~~~~~ 160 (163)
..+++|+++++++...-..+..+++
T Consensus 116 EvlVVne~d~LlAvGra~ls~~E~~ 140 (155)
T COG1370 116 EVLVVNEDDELLAVGRALLSGAEMR 140 (155)
T ss_pred eEEEECCCCcEEEeeeEeecHHHHh
Confidence 6799999999998766666666654
No 284
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=35.38 E-value=54 Score=20.32 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=15.6
Q ss_pred eEEEECCCCcEEEEeCCCC
Q 031257 136 AKFLVDKNGQVVDRYYPTT 154 (163)
Q Consensus 136 ~~~lid~~G~i~~~~~g~~ 154 (163)
..++.||+|+.+..+.|..
T Consensus 93 ~~~~~DP~Gn~iel~~~~~ 111 (112)
T cd08344 93 GVWFRDPDGNLLQVKVAEK 111 (112)
T ss_pred EEEEECCCCCEEEEecCCC
Confidence 4689999999998877653
No 285
>PRK12359 flavodoxin FldB; Provisional
Probab=35.24 E-value=1.3e+02 Score=21.00 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=14.8
Q ss_pred EEEEEeccCC-CCCChhhHHHHH-HHHH-HhcCCCeEEEE
Q 031257 34 VLLIVNVASK-CGMTNSNYIELS-QLYD-KYKDQGLEILA 70 (163)
Q Consensus 34 ~vlv~f~~s~-C~~C~~~~~~l~-~~~~-~~~~~~~~ii~ 70 (163)
.+++-+ .|| -+.+......+- ++.+ .++++.+.+.+
T Consensus 48 ~iIlG~-pTw~~Gel~~d~~~~~~~l~~~dl~gK~vAlFG 86 (172)
T PRK12359 48 VLILGI-PTWDFGEIQEDWEAVWDQLDDLNLEGKIVALYG 86 (172)
T ss_pred EEEEEe-cccCCCcCcHHHHHHHHHHhhCCCCCCEEEEEe
Confidence 344433 445 344544443332 3322 23454455555
No 286
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=34.24 E-value=26 Score=18.92 Aligned_cols=23 Identities=22% Similarity=0.070 Sum_probs=15.0
Q ss_pred eEEEECCCCcEEEEeCCCCCcch
Q 031257 136 AKFLVDKNGQVVDRYYPTTSLLS 158 (163)
Q Consensus 136 ~~~lid~~G~i~~~~~g~~~~~~ 158 (163)
...|.+.||+|+....+..+...
T Consensus 7 ~f~L~a~ng~viasse~Y~sk~~ 29 (49)
T PF07411_consen 7 RFRLKAGNGEVIASSEGYSSKAD 29 (49)
T ss_dssp EEEEE-TTS-EEEEBEEBSSHHH
T ss_pred EEEEEcCCCCEEEecCCcCCHHH
Confidence 56788999999997666555443
No 287
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=34.23 E-value=23 Score=20.84 Aligned_cols=15 Identities=40% Similarity=0.718 Sum_probs=12.1
Q ss_pred eEEEECCCCcEEEEe
Q 031257 136 AKFLVDKNGQVVDRY 150 (163)
Q Consensus 136 ~~~lid~~G~i~~~~ 150 (163)
..||+|++|++++..
T Consensus 55 ~~~ivd~~G~ii~hp 69 (81)
T PF02743_consen 55 YAFIVDKNGTIIAHP 69 (81)
T ss_dssp EEEEEETTSBBCE-S
T ss_pred EEEEEECCCCEEEeC
Confidence 579999999999863
No 288
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=33.34 E-value=1.3e+02 Score=22.70 Aligned_cols=17 Identities=12% Similarity=0.366 Sum_probs=11.4
Q ss_pred HHHHHhcCCCeEEEEEe
Q 031257 56 QLYDKYKDQGLEILAFP 72 (163)
Q Consensus 56 ~~~~~~~~~~~~ii~is 72 (163)
++.+++.++|.+++.|.
T Consensus 21 ~~A~~lA~~g~~liLva 37 (265)
T COG0300 21 ELAKQLARRGYNLILVA 37 (265)
T ss_pred HHHHHHHHCCCEEEEEe
Confidence 45556666777777776
No 289
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=33.22 E-value=1.1e+02 Score=20.14 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=29.9
Q ss_pred EEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 031257 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC 92 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~ 92 (163)
+..+..+.|.-|++...-|.+ +|+.+-.+++- ...-+.+++..|+.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~-------~gi~~~~~d~~----~~p~t~~eL~~~l~ 48 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA-------SGHDVEVQDIL----KEPWHADTLRPYFG 48 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEecc----CCCcCHHHHHHHHH
Confidence 445667899999987766643 34555555442 12357888888887
No 290
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=32.52 E-value=1.3e+02 Score=19.04 Aligned_cols=26 Identities=12% Similarity=-0.036 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHH---hcCCCeEEEEEecC
Q 031257 48 NSNYIELSQLYDK---YKDQGLEILAFPCN 74 (163)
Q Consensus 48 ~~~~~~l~~~~~~---~~~~~~~ii~is~d 74 (163)
......+.+++++ ++++ +.++.++.+
T Consensus 30 ~~~~~~~~~vAk~~~~~kgk-i~Fv~~d~~ 58 (111)
T cd03072 30 ESLKEFKQAVARQLISEKGA-INFLTADGD 58 (111)
T ss_pred HHHHHHHHHHHHHHHhcCce-EEEEEEech
Confidence 4456778888888 8876 888888754
No 291
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=32.43 E-value=2.8e+02 Score=22.75 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=32.1
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCcc
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEF 99 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (163)
..+|.+|.+.+---.-=......|...+++ +|..++-|++|.+++ ..-+.++.... +.+++|
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk---~~~kvllVaaD~~Rp---AA~eQL~~La~-q~~v~~ 158 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKK---KGKKVLLVAADTYRP---AAIEQLKQLAE-QVGVPF 158 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHH---cCCceEEEecccCCh---HHHHHHHHHHH-HcCCce
Confidence 456777777765544434444455555544 445666666664322 23344444443 555543
No 292
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=32.42 E-value=38 Score=19.50 Aligned_cols=18 Identities=11% Similarity=0.039 Sum_probs=12.4
Q ss_pred EeccCCCCCChhhHHHHH
Q 031257 38 VNVASKCGMTNSNYIELS 55 (163)
Q Consensus 38 ~f~~s~C~~C~~~~~~l~ 55 (163)
.|....||.|++..-.|.
T Consensus 4 Ly~~~~~p~c~kv~~~L~ 21 (77)
T cd03040 4 LYQYKTCPFCCKVRAFLD 21 (77)
T ss_pred EEEcCCCHHHHHHHHHHH
Confidence 345678999987765553
No 293
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=31.73 E-value=7.1 Score=20.88 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=15.2
Q ss_pred CCCCChhhHHHHHHHHHHhc
Q 031257 43 KCGMTNSNYIELSQLYDKYK 62 (163)
Q Consensus 43 ~C~~C~~~~~~l~~~~~~~~ 62 (163)
.|.+|+.-++.|.++.++..
T Consensus 18 kC~PCR~Gt~~l~~~l~~i~ 37 (46)
T PF10589_consen 18 KCTPCREGTRQLAEILEKIV 37 (46)
T ss_dssp --HHHHCCCCHHHHHHHHHT
T ss_pred CCCCcHhHHHHHHHHHHHHH
Confidence 57799999999988888764
No 294
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=31.71 E-value=2e+02 Score=21.87 Aligned_cols=74 Identities=23% Similarity=0.403 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeee-cCCCcchhHHHHhHhCC-CcccCCcc
Q 031257 54 LSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID-VNGEHASPLYKLLKSGK-WGIFGDDI 131 (163)
Q Consensus 54 l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~-~~~~~~~i 131 (163)
++.+..+|.++|..+|-|+=+ +-.+-..+-+-++ ...-.|-++ +| ..-+.....|+.++... +|+ .+-
T Consensus 102 VKA~~~e~~~~glrLVEV~k~-----dl~~Lp~l~~~Lr-~~~~kFIlF--cDDLSFe~gd~~yK~LKs~LeG~v--e~r 171 (287)
T COG2607 102 VKALLNEYADEGLRLVEVDKE-----DLATLPDLVELLR-ARPEKFILF--CDDLSFEEGDDAYKALKSALEGGV--EGR 171 (287)
T ss_pred HHHHHHHHHhcCCeEEEEcHH-----HHhhHHHHHHHHh-cCCceEEEE--ecCCCCCCCchHHHHHHHHhcCCc--ccC
Confidence 556677777888889888732 1123333444443 334455555 54 34445555677776554 333 333
Q ss_pred ccCeeEEEE
Q 031257 132 QWNFAKFLV 140 (163)
Q Consensus 132 p~~~~~~li 140 (163)
| ..+|+
T Consensus 172 P---~NVl~ 177 (287)
T COG2607 172 P---ANVLF 177 (287)
T ss_pred C---CeEEE
Confidence 3 66665
No 295
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=31.31 E-value=1.1e+02 Score=17.65 Aligned_cols=19 Identities=5% Similarity=-0.143 Sum_probs=12.4
Q ss_pred EeccCCCCCChhhHHHHHH
Q 031257 38 VNVASKCGMTNSNYIELSQ 56 (163)
Q Consensus 38 ~f~~s~C~~C~~~~~~l~~ 56 (163)
.+..++||.|.+..-.|.+
T Consensus 4 Ly~~~~sp~~~kv~~~L~~ 22 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTE 22 (77)
T ss_pred EecCCCCchHHHHHHHHHH
Confidence 3446789999876655533
No 296
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=31.24 E-value=49 Score=18.54 Aligned_cols=20 Identities=10% Similarity=-0.051 Sum_probs=13.6
Q ss_pred EeccCCCCCChhhHHHHHHH
Q 031257 38 VNVASKCGMTNSNYIELSQL 57 (163)
Q Consensus 38 ~f~~s~C~~C~~~~~~l~~~ 57 (163)
.|..++|+.|.+..-.|...
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEeCCCCcchHHHHHHHHHc
Confidence 35567899998776655443
No 297
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=31.22 E-value=1.7e+02 Score=19.90 Aligned_cols=61 Identities=21% Similarity=0.215 Sum_probs=44.6
Q ss_pred cceEEecCCCCeeecccc-CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEec
Q 031257 13 FDLSVKDARGHEVDLSTY-KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 13 p~f~l~~~~G~~~~l~~~-~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
-++.|.+..|..+++++. +.+.-+++..|+.-.+=...+..++.+.+-++...+-+.++.+
T Consensus 38 e~l~l~~~~~~~v~l~~~~~n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL 99 (142)
T PF07801_consen 38 EDLKLLDNPGPFVDLSSSSKNSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGL 99 (142)
T ss_pred hhhhhccCCCcceecccccccCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 345566677888888885 4555566666777777777778888888888887788888875
No 298
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=31.17 E-value=53 Score=25.03 Aligned_cols=22 Identities=14% Similarity=0.070 Sum_probs=14.0
Q ss_pred eccCCCCCChhhHHHHHHHHHHh
Q 031257 39 NVASKCGMTNSNYIELSQLYDKY 61 (163)
Q Consensus 39 f~~s~C~~C~~~~~~l~~~~~~~ 61 (163)
...+|||-|-... .++.+.+.+
T Consensus 15 ~~~~~CpGCg~~~-il~~l~~al 36 (286)
T PRK11867 15 QEPRWCPGCGDGS-ILAALQRAL 36 (286)
T ss_pred CCCCcCCCCCCHH-HHHHHHHHH
Confidence 3456999997654 555555555
No 299
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=30.91 E-value=2.4e+02 Score=21.87 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=8.3
Q ss_pred eEEEECCCCcEEE
Q 031257 136 AKFLVDKNGQVVD 148 (163)
Q Consensus 136 ~~~lid~~G~i~~ 148 (163)
+..++|++|+++.
T Consensus 187 Rl~~vd~~G~~l~ 199 (355)
T cd03084 187 RLIVVDENGGFLD 199 (355)
T ss_pred eeEEECCCCceeC
Confidence 4567777776653
No 300
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=30.89 E-value=56 Score=17.63 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=12.8
Q ss_pred EEECCCCcEEEEeCCC
Q 031257 138 FLVDKNGQVVDRYYPT 153 (163)
Q Consensus 138 ~lid~~G~i~~~~~g~ 153 (163)
|.|++||+|.....|.
T Consensus 3 ~~I~~dG~V~~~v~G~ 18 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGF 18 (48)
T ss_pred EEECCCcEEEEEEEec
Confidence 7899999998875553
No 301
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=30.29 E-value=1.9e+02 Score=23.46 Aligned_cols=12 Identities=50% Similarity=0.720 Sum_probs=7.7
Q ss_pred eEEEECCCCcEE
Q 031257 136 AKFLVDKNGQVV 147 (163)
Q Consensus 136 ~~~lid~~G~i~ 147 (163)
+..++|++|+++
T Consensus 239 R~~ivd~~G~~l 250 (445)
T PRK09542 239 RCFVVDERGQPV 250 (445)
T ss_pred eEEEECCCCCCc
Confidence 456677777664
No 302
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=30.21 E-value=2.9e+02 Score=22.42 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=7.1
Q ss_pred eEEEECCCCcEE
Q 031257 136 AKFLVDKNGQVV 147 (163)
Q Consensus 136 ~~~lid~~G~i~ 147 (163)
+..+||.+|+++
T Consensus 249 R~~~vd~~G~~i 260 (450)
T PRK14314 249 RLIVVDEKGHIV 260 (450)
T ss_pred eEEEECCCCcCc
Confidence 455666666554
No 303
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=30.02 E-value=1e+02 Score=21.85 Aligned_cols=38 Identities=16% Similarity=0.475 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHhcCC--CeEEEEEecCCCCCCCCCCHHHHHHHHHhhc
Q 031257 50 NYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVCTRF 95 (163)
Q Consensus 50 ~~~~l~~~~~~~~~~--~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~ 95 (163)
....|.++++....- .+++++||++ + .+.+.++++..+
T Consensus 19 r~~~F~~lw~~l~~~~~~Lk~lAiSc~-------~-~~~li~~L~~~~ 58 (183)
T PF12617_consen 19 RLAAFERLWQALAPSVPQLKLLAISCP-------D-GEGLIDYLWQLY 58 (183)
T ss_pred ccHHHHHHHHHHHhhhhhccEEEEECC-------C-CHHHHHHHHHHH
Confidence 456677777766543 5889999996 2 466666666554
No 304
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=29.90 E-value=51 Score=19.93 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=11.7
Q ss_pred eEEEECCCCcEEEEeCCCC
Q 031257 136 AKFLVDKNGQVVDRYYPTT 154 (163)
Q Consensus 136 ~~~lid~~G~i~~~~~g~~ 154 (163)
-+.|.|++|+.++++....
T Consensus 27 D~~v~d~~g~~vwrwS~~~ 45 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRWSDGK 45 (82)
T ss_dssp EEEEE-TT--EEEETTTT-
T ss_pred EEEEECCCCCEEEEecCCc
Confidence 4678899999999976443
No 305
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=29.58 E-value=2.2e+02 Score=23.15 Aligned_cols=13 Identities=46% Similarity=0.662 Sum_probs=8.7
Q ss_pred eEEEECCCCcEEE
Q 031257 136 AKFLVDKNGQVVD 148 (163)
Q Consensus 136 ~~~lid~~G~i~~ 148 (163)
+..+||.+|+++.
T Consensus 260 R~~~vd~~G~~i~ 272 (465)
T PRK14317 260 RVLAVDGQGRVVD 272 (465)
T ss_pred EEEEECCCCCEEC
Confidence 4567777776654
No 306
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=29.54 E-value=27 Score=27.52 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=21.0
Q ss_pred cCCCCCChhhHHHHHHHHHHhcCC
Q 031257 41 ASKCGMTNSNYIELSQLYDKYKDQ 64 (163)
Q Consensus 41 ~s~C~~C~~~~~~l~~~~~~~~~~ 64 (163)
.++||.|...+..|+++.+++...
T Consensus 94 ~t~~p~~~~~~~~lq~~~~~lN~~ 117 (361)
T PF06122_consen 94 QTLCPQCGNIMDKLQKIAQALNQM 117 (361)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHhh
Confidence 379999999999999999988654
No 307
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=29.42 E-value=16 Score=24.68 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=12.0
Q ss_pred CCCCCChhhHHHHH
Q 031257 42 SKCGMTNSNYIELS 55 (163)
Q Consensus 42 s~C~~C~~~~~~l~ 55 (163)
..||.|+..+|+|.
T Consensus 10 i~CPhCRQ~ipALt 23 (163)
T TIGR02652 10 IRCPHCRQNIPALT 23 (163)
T ss_pred CcCchhhcccchhe
Confidence 46999999999885
No 308
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=29.22 E-value=16 Score=24.64 Aligned_cols=14 Identities=14% Similarity=0.263 Sum_probs=12.0
Q ss_pred CCCCCChhhHHHHH
Q 031257 42 SKCGMTNSNYIELS 55 (163)
Q Consensus 42 s~C~~C~~~~~~l~ 55 (163)
..||+|+..+|+|.
T Consensus 7 i~CPhCRq~ipALt 20 (161)
T PF09654_consen 7 IQCPHCRQTIPALT 20 (161)
T ss_pred CcCchhhcccchhe
Confidence 46999999999885
No 309
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=29.21 E-value=31 Score=20.73 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=14.4
Q ss_pred eEEEECCCCcEEEEeC-CCCCcchhhh
Q 031257 136 AKFLVDKNGQVVDRYY-PTTSLLSLEV 161 (163)
Q Consensus 136 ~~~lid~~G~i~~~~~-g~~~~~~~~~ 161 (163)
++.++|.+|+++-+.. ...+.+++.+
T Consensus 44 ~L~l~d~~g~~~E~i~i~~w~~d~i~e 70 (78)
T PF08806_consen 44 ELVLLDEDGEEVERINIEKWKTDEIEE 70 (78)
T ss_dssp EEEEE-SSS--SEEEE-SSSSHCHHHH
T ss_pred EEEEEcCCCCEEEEEEcccCCHHHHHH
Confidence 8999999999876532 3334454443
No 310
>PF14903 WG_beta_rep: WG containing repeat
Probab=28.87 E-value=40 Score=16.00 Aligned_cols=10 Identities=50% Similarity=0.853 Sum_probs=8.1
Q ss_pred EECCCCcEEE
Q 031257 139 LVDKNGQVVD 148 (163)
Q Consensus 139 lid~~G~i~~ 148 (163)
+||.+|+++-
T Consensus 3 ~id~~G~~vi 12 (35)
T PF14903_consen 3 YIDKNGKIVI 12 (35)
T ss_pred EEeCCCCEEE
Confidence 6888998875
No 311
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=28.65 E-value=1.2e+02 Score=19.47 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=12.3
Q ss_pred ChhhHHHHHHHHHHhcCCCeEEEEEec
Q 031257 47 TNSNYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 47 C~~~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
+..+.-.|..+...++++...|.-|++
T Consensus 96 ~~~dq~gl~~~l~~L~~~~~~I~~v~~ 122 (124)
T PF08874_consen 96 NAYDQLGLRYLLSLLKDKPNRIYVVNV 122 (124)
T ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 333334444445555555444544443
No 312
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=28.60 E-value=3.1e+02 Score=22.22 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=8.9
Q ss_pred eEEEECCCCcEEE
Q 031257 136 AKFLVDKNGQVVD 148 (163)
Q Consensus 136 ~~~lid~~G~i~~ 148 (163)
+..++|.+|+++.
T Consensus 238 R~~vvd~~G~~~~ 250 (449)
T PRK14321 238 RIGVVDDQGNFVE 250 (449)
T ss_pred eEEEECCCCCEeC
Confidence 5667777777764
No 313
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=28.13 E-value=1.7e+02 Score=18.69 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHhc-CCCeEEEEEec
Q 031257 48 NSNYIELSQLYDKYK-DQGLEILAFPC 73 (163)
Q Consensus 48 ~~~~~~l~~~~~~~~-~~~~~ii~is~ 73 (163)
......+.+++++++ ++ +.++.++.
T Consensus 34 ~~~~~~~~~vAk~fk~gk-i~Fv~~D~ 59 (111)
T cd03073 34 NYWRNRVLKVAKDFPDRK-LNFAVADK 59 (111)
T ss_pred HHHHHHHHHHHHHCcCCe-EEEEEEcH
Confidence 345688889999999 56 77777754
No 314
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=27.74 E-value=1.4e+02 Score=17.80 Aligned_cols=35 Identities=9% Similarity=0.185 Sum_probs=23.6
Q ss_pred CcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEE
Q 031257 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70 (163)
Q Consensus 32 gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~ 70 (163)
.++++|-|+.++|. .....+.++++.+++. +.+..
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~-~~F~~ 51 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDD-YGFGH 51 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcccC-CeEEE
Confidence 46788888887776 5667777777777653 44433
No 315
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=27.01 E-value=2.1e+02 Score=23.22 Aligned_cols=12 Identities=33% Similarity=0.238 Sum_probs=7.2
Q ss_pred eEEecCCCCeee
Q 031257 15 LSVKDARGHEVD 26 (163)
Q Consensus 15 f~l~~~~G~~~~ 26 (163)
+++.+.+|..++
T Consensus 109 iK~~~~~G~~i~ 120 (461)
T cd05800 109 VKVKPAFGGSAL 120 (461)
T ss_pred EEEeCCCCCcCC
Confidence 566666665554
No 316
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=26.99 E-value=65 Score=24.78 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=7.5
Q ss_pred cCCCCCChhh
Q 031257 41 ASKCGMTNSN 50 (163)
Q Consensus 41 ~s~C~~C~~~ 50 (163)
.+|||-|-..
T Consensus 18 ~~~CpGCg~~ 27 (301)
T PRK05778 18 TTWCPGCGNF 27 (301)
T ss_pred CCCCCCCCCh
Confidence 4699999654
No 317
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.74 E-value=2.9e+02 Score=21.05 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=32.1
Q ss_pred ChhhHHHHHHHHHHhcCCC--eEEEEEecC--------CCCCCCCCCHHHHHHHHHhhcCCccceeeeeecC
Q 031257 47 TNSNYIELSQLYDKYKDQG--LEILAFPCN--------QFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN 108 (163)
Q Consensus 47 C~~~~~~l~~~~~~~~~~~--~~ii~is~d--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 108 (163)
+.....++.++.+++++.+ +.++-+..+ ..+.....+.+++.+.+. +.++.+-++ .++.
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~-~~G~k~~l~--i~P~ 93 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLH-DLGFRVTLW--VHPF 93 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCCCHHHHHHHHH-HCCCeEEEE--ECCe
Confidence 4445566777777777765 445555432 112223345566666665 556665554 4543
No 318
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=26.74 E-value=2e+02 Score=19.15 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=19.7
Q ss_pred EEeccCCCCCChhhHHHHHHHHHHhcC
Q 031257 37 IVNVASKCGMTNSNYIELSQLYDKYKD 63 (163)
Q Consensus 37 v~f~~s~C~~C~~~~~~l~~~~~~~~~ 63 (163)
|.|+..-| .|..++..|+++.+.+..
T Consensus 52 V~i~Y~p~-~~~~~v~~L~~l~~~~~~ 77 (130)
T PF11303_consen 52 VWITYDPC-LPPDQVAKLKALAKSCLP 77 (130)
T ss_pred EEEEECCC-CCHHHHHHHHHHHhccCC
Confidence 34455556 999999999999988544
No 319
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=26.59 E-value=48 Score=16.94 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=15.2
Q ss_pred cCCcEEEE-EeccCCCCCChhh
Q 031257 30 YKGKVLLI-VNVASKCGMTNSN 50 (163)
Q Consensus 30 ~~gk~vlv-~f~~s~C~~C~~~ 50 (163)
++|+.++| .+.+-.|+.|-+.
T Consensus 20 ~~~~~~~i~~vp~~~C~~CGE~ 41 (46)
T TIGR03831 20 YGGELIVIENVPALVCPQCGEE 41 (46)
T ss_pred eCCEEEEEeCCCccccccCCCE
Confidence 46776666 7778889999654
No 320
>PRK10200 putative racemase; Provisional
Probab=26.50 E-value=1.3e+02 Score=21.89 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCcccee
Q 031257 49 SNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIF 102 (163)
Q Consensus 49 ~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (163)
.-.+.|.+..+.+.+.|+.++.|.+| +...+.+.+++. .+.|++
T Consensus 59 ~~~~~l~~~~~~L~~~g~~~iviaCN--------Tah~~~~~l~~~--~~iPii 102 (230)
T PRK10200 59 KTGDILAEAALGLQRAGAEGIVLCTN--------TMHKVADAIESR--CSLPFL 102 (230)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCc--------hHHHHHHHHHHh--CCCCEe
Confidence 35688888888888889999999986 555556666543 356776
No 321
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=26.33 E-value=2.4e+02 Score=22.83 Aligned_cols=12 Identities=33% Similarity=0.553 Sum_probs=7.5
Q ss_pred eEEEECCCCcEE
Q 031257 136 AKFLVDKNGQVV 147 (163)
Q Consensus 136 ~~~lid~~G~i~ 147 (163)
+..++|++|+++
T Consensus 246 R~~ivd~~G~~i 257 (445)
T cd05803 246 RLALVDEDGRPI 257 (445)
T ss_pred eEEEECCCCCCc
Confidence 456667766654
No 322
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=26.33 E-value=1.8e+02 Score=18.63 Aligned_cols=9 Identities=11% Similarity=0.006 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 031257 84 NDQIADFVC 92 (163)
Q Consensus 84 ~~~~~~~~~ 92 (163)
...+.+.+.
T Consensus 99 ~~~~~~~l~ 107 (140)
T TIGR01753 99 VDDWEERLK 107 (140)
T ss_pred HHHHHHHHH
Confidence 334555554
No 323
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=26.24 E-value=1.1e+02 Score=19.19 Aligned_cols=51 Identities=14% Similarity=0.254 Sum_probs=28.2
Q ss_pred ccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCcccee
Q 031257 40 VASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIF 102 (163)
Q Consensus 40 ~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (163)
..+.|.-|++.+.-|. +.|+.+-.+++- ...-+.+++.+++. ..+.++.-+
T Consensus 2 ~~~~C~t~rka~~~L~-------~~gi~~~~~d~~----k~p~s~~el~~~l~-~~~~~~~~l 52 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLE-------ENGIEYEFIDYK----KEPLSREELRELLS-KLGNGPDDL 52 (110)
T ss_dssp E-TT-HHHHHHHHHHH-------HTT--EEEEETT----TS---HHHHHHHHH-HHTSSGGGG
T ss_pred cCCCCHHHHHHHHHHH-------HcCCCeEeehhh----hCCCCHHHHHHHHH-HhcccHHHH
Confidence 3567888877765554 345666666653 22357888888887 677544444
No 324
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=25.93 E-value=71 Score=17.09 Aligned_cols=29 Identities=7% Similarity=-0.032 Sum_probs=16.7
Q ss_pred eccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEe
Q 031257 39 NVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (163)
Q Consensus 39 f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is 72 (163)
|...+||.|.+....|... +-.+.++.++
T Consensus 4 y~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~ 32 (71)
T cd00570 4 YYFPGSPRSLRVRLALEEK-----GLPYELVPVD 32 (71)
T ss_pred EeCCCCccHHHHHHHHHHc-----CCCcEEEEeC
Confidence 4567799998655544433 2235555554
No 325
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=25.93 E-value=65 Score=19.35 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=12.4
Q ss_pred eEEEECCCCcEEEE
Q 031257 136 AKFLVDKNGQVVDR 149 (163)
Q Consensus 136 ~~~lid~~G~i~~~ 149 (163)
.++++|++|+|++.
T Consensus 13 ~i~~~d~~g~I~~~ 26 (113)
T PF00989_consen 13 GIFVIDEDGRILYV 26 (113)
T ss_dssp EEEEEETTSBEEEE
T ss_pred eEEEEeCcCeEEEE
Confidence 47999999999987
No 326
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=25.36 E-value=1.7e+02 Score=18.81 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=28.6
Q ss_pred CCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCC---CCHHHHHHHHHhhc
Q 031257 44 CGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP---GSNDQIADFVCTRF 95 (163)
Q Consensus 44 C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~---~~~~~~~~~~~~~~ 95 (163)
|+.-......++...++| |+.+++++.|.+.-.-. .+.++..+++.+.+
T Consensus 26 ~~~~~~~~a~lr~W~er~---ga~i~~i~~d~le~~v~~pP~~~~ea~~lA~E~y 77 (111)
T PF14062_consen 26 CPDTADIIAVLRYWEERY---GAEIVGIGFDTLELSVARPPQTPEEAEALAAEHY 77 (111)
T ss_pred CCCHHHHHHHHHHHHHHh---CEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 555555555555555554 67888887653222222 34588888887543
No 327
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.17 E-value=38 Score=26.06 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=36.0
Q ss_pred cccCCcEEEEEeccCCCCCChhhHHHHH-HHHHHhcCCCeEEEEEecC
Q 031257 28 STYKGKVLLIVNVASKCGMTNSNYIELS-QLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 28 ~~~~gk~vlv~f~~s~C~~C~~~~~~l~-~~~~~~~~~~~~ii~is~d 74 (163)
..+..|+-+|-.-|-.-..|+.++..+. ++..++...|+.|.-+.+|
T Consensus 171 k~LdskVNIIPvIAKaDtisK~eL~~FK~kimsEL~sngv~IYqfPtD 218 (406)
T KOG3859|consen 171 KKLDSKVNIIPVIAKADTISKEELKRFKIKIMSELVSNGVQIYQFPTD 218 (406)
T ss_pred HHHhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCceeeeccch
Confidence 3344566666666766677888888887 5888888889999999875
No 328
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=24.84 E-value=1.8e+02 Score=18.14 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=32.1
Q ss_pred CCCCeeeccccC--CcEEEEEecc--CCCCCChhhHHH-HHHHHHHhcCCCeEEEEE
Q 031257 20 ARGHEVDLSTYK--GKVLLIVNVA--SKCGMTNSNYIE-LSQLYDKYKDQGLEILAF 71 (163)
Q Consensus 20 ~~G~~~~l~~~~--gk~vlv~f~~--s~C~~C~~~~~~-l~~~~~~~~~~~~~ii~i 71 (163)
.||-.+.+-+++ +..+.|.|-+ +.||.....+.. +.+..+++-..-..+..+
T Consensus 28 ~dGGdve~~~i~~~~g~V~l~l~GaC~gC~sS~~TLk~gIE~~L~~~i~ev~~V~~v 84 (93)
T COG0694 28 MDGGDVELVGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEEIPEVKEVEQV 84 (93)
T ss_pred ccCCeEEEEEEecCCCeEEEEeCCcCCCCcccHHHHHHHHHHHHHHhCCccceEEEc
Confidence 478888888886 3467777774 567777666655 555555443333444444
No 329
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.64 E-value=2.9e+02 Score=20.37 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=27.8
Q ss_pred cEEEEEec-cCCCCCChhhHHHHHHHHHHhcCC-CeEEEE
Q 031257 33 KVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQ-GLEILA 70 (163)
Q Consensus 33 k~vlv~f~-~s~C~~C~~~~~~l~~~~~~~~~~-~~~ii~ 70 (163)
+.+-|.+| -.-||.|-.--+.|.++..++... .+++..
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w 43 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRW 43 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEe
Confidence 34555666 467999999999999999998854 344443
No 330
>PRK08671 methionine aminopeptidase; Provisional
Probab=24.36 E-value=1.2e+02 Score=22.95 Aligned_cols=68 Identities=13% Similarity=0.258 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCCCCCCCC-HHHHHHHHHhhcCC--ccceeeeeecCCCcchhHHHHhHhCCCcccC
Q 031257 52 IELSQLYDKYKDQGLEILAFPCNQFGEEEPGS-NDQIADFVCTRFKS--EFPIFEKIDVNGEHASPLYKLLKSGKWGIFG 128 (163)
Q Consensus 52 ~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 128 (163)
.-|+++.++|+...+..=.+. ++ ... ...+.+-. ++++ +||++ .+..+...
T Consensus 219 ~~~~~i~~~~~~~pF~~r~l~-----~~-~~~~~~~~~~~~--~~~~~~~yp~l--~e~~~~~v---------------- 272 (291)
T PRK08671 219 KLLEEIEEEYNTLPFAERWLE-----GL-FGEDKLELRRLL--KAGALYGYPVL--KEVKGGLV---------------- 272 (291)
T ss_pred HHHHHHHHHCCCCCcchHHhh-----cc-chhhHHHHHHHH--HCCCcccCCcc--EecCCCEE----------------
Confidence 356666766665433333332 11 011 11144443 4555 88888 66555432
Q ss_pred CccccCeeEEEECCCCcEEE
Q 031257 129 DDIQWNFAKFLVDKNGQVVD 148 (163)
Q Consensus 129 ~~ip~~~~~~lid~~G~i~~ 148 (163)
.+.- +|++|.++|.++-
T Consensus 273 aq~~---~Tv~v~~~g~~~~ 289 (291)
T PRK08671 273 SQAE---HTVIVTEDGCEVT 289 (291)
T ss_pred EEEE---EEEEECCCCcEEe
Confidence 1222 7899999998763
No 331
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.99 E-value=1.9e+02 Score=20.27 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=33.5
Q ss_pred EEEEEeccCCCCCCh----------hhHHHHHHHHHHhcCCCeEEEEEec
Q 031257 34 VLLIVNVASKCGMTN----------SNYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 34 ~vlv~f~~s~C~~C~----------~~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
.++|++-..+|+.+. ...+.++++.+.++..|..++....
T Consensus 8 LivID~Q~~f~~~~~~~~~~~~~~~~i~~~i~~l~~~ar~~~~~vi~t~~ 57 (205)
T COG1335 8 LIVVDMQNDFMPGGGSLAALGVDGRKIIPNIAALVDAARAAGQPVIATQD 57 (205)
T ss_pred EEEEeeeccccCCCCcccccCCchhhhHHHHHHHHHHHHHcCCeEEEecc
Confidence 678999999998763 3778999999999888899988864
No 332
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=23.84 E-value=15 Score=15.53 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=7.1
Q ss_pred CCCChhhHHHHHHHH
Q 031257 44 CGMTNSNYIELSQLY 58 (163)
Q Consensus 44 C~~C~~~~~~l~~~~ 58 (163)
|+.|....+...++.
T Consensus 3 C~~C~~~~~~~~~l~ 17 (24)
T PF13894_consen 3 CPICGKSFRSKSELR 17 (24)
T ss_dssp -SSTS-EESSHHHHH
T ss_pred CcCCCCcCCcHHHHH
Confidence 666766655444443
No 333
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=23.64 E-value=1.1e+02 Score=20.42 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=12.5
Q ss_pred eEEEECCCCcEEEE
Q 031257 136 AKFLVDKNGQVVDR 149 (163)
Q Consensus 136 ~~~lid~~G~i~~~ 149 (163)
.++++|++|++++.
T Consensus 52 ~~~~~d~~g~~~~~ 65 (161)
T PF05228_consen 52 LIFILDPDGRVLYS 65 (161)
T ss_pred EEEEEcCCCCEEEE
Confidence 68999999999983
No 334
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=23.62 E-value=93 Score=23.65 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=15.9
Q ss_pred cCCCCCChhh--HHHHHHHHHHh
Q 031257 41 ASKCGMTNSN--YIELSQLYDKY 61 (163)
Q Consensus 41 ~s~C~~C~~~--~~~l~~~~~~~ 61 (163)
.+|||-|-.. +..+++...++
T Consensus 7 ~~~CpGCg~~~il~al~~al~~l 29 (279)
T PRK11866 7 PIWCPGCGNYGILEALRKALAEL 29 (279)
T ss_pred CCCCCCCCChHHHHHHHHHHHHh
Confidence 5799999876 57777777665
No 335
>PF05209 MinC_N: Septum formation inhibitor MinC, N-terminal domain; InterPro: IPR007874 In Escherichia coli FtsZ (P0A9A6 from SWISSPROT) assembles into a Z ring at midcell. Its assembly at polar sites is prevented by the min system. MinC P18196 from SWISSPROT, a component of this system, is an inhibitor of FtsZ assembly that is positioned within the cell by interaction with the MinDE proteins. MinC is an oligomer, probably a dimer []. The C-terminal half of MinC is the most conserved and interacts with MinD. The N-terminal half is thought to interact with FtsZ. MinC rapidly oscillates between the poles of the cell to destabilise FtsZ filaments that have formed before they mature into polar Z rings; GO: 0051302 regulation of cell division; PDB: 3GHF_A 1HF2_C.
Probab=23.51 E-value=50 Score=20.59 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=22.5
Q ss_pred cCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEe
Q 031257 30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (163)
Q Consensus 30 ~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is 72 (163)
|++-+++|.+-.- .....+.. +..-+++.|+.++||.
T Consensus 43 F~~~pvvldl~~l---~~~~dl~~---L~~~l~~~gl~~vgv~ 79 (99)
T PF05209_consen 43 FKNAPVVLDLSNL---PDELDLAA---LVELLRRHGLRPVGVR 79 (99)
T ss_dssp CTTTEEEEEEEEE---ETTHHHHH---HHHHHHCCCHCCCCEH
T ss_pred HcCCCeEEehhhc---CChhhHHH---HHHHHHHcCCEEEEec
Confidence 4677888888766 33333444 4444455677888873
No 336
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=23.30 E-value=3.7e+02 Score=21.62 Aligned_cols=11 Identities=27% Similarity=0.588 Sum_probs=6.4
Q ss_pred eEEEECCCCcE
Q 031257 136 AKFLVDKNGQV 146 (163)
Q Consensus 136 ~~~lid~~G~i 146 (163)
+..++|.+|++
T Consensus 238 R~~~vd~~G~~ 248 (439)
T cd03087 238 RAVFVDEKGRF 248 (439)
T ss_pred eEEEECCCCCE
Confidence 34566666664
No 337
>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.
Probab=23.03 E-value=3.3e+02 Score=20.87 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=27.1
Q ss_pred CCCCeeeccccCCcEEEEEecc--CCCCCChhhHHHHHHHH
Q 031257 20 ARGHEVDLSTYKGKVLLIVNVA--SKCGMTNSNYIELSQLY 58 (163)
Q Consensus 20 ~~G~~~~l~~~~gk~vlv~f~~--s~C~~C~~~~~~l~~~~ 58 (163)
.+|-.+.+-++++..+.|-|-+ +.||.....+..+.+..
T Consensus 237 ~dGGdv~lv~v~~~~v~v~l~GaC~gC~~s~~Tl~~Ie~~l 277 (290)
T TIGR02000 237 ADGGDVELYDVDGKIVYVVLTGACSGCSMSTMTLKGIQQRL 277 (290)
T ss_pred hcCCcEEEEEEeCCEEEEEEeeCCCCCcchHHHHHHHHHHH
Confidence 3677788888888778888875 45776666666554433
No 338
>PRK09267 flavodoxin FldA; Validated
Probab=23.01 E-value=2.2e+02 Score=19.30 Aligned_cols=9 Identities=22% Similarity=0.357 Sum_probs=4.7
Q ss_pred EEEeccCCC
Q 031257 36 LIVNVASKC 44 (163)
Q Consensus 36 lv~f~~s~C 44 (163)
||.-.++|+
T Consensus 50 vi~g~pt~~ 58 (169)
T PRK09267 50 LILGIPTWG 58 (169)
T ss_pred EEEEecCcC
Confidence 444445664
No 339
>PHA02762 hypothetical protein; Provisional
Probab=22.98 E-value=1.5e+02 Score=16.50 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=15.3
Q ss_pred eEEEECCCCcEEEEeCCCCC
Q 031257 136 AKFLVDKNGQVVDRYYPTTS 155 (163)
Q Consensus 136 ~~~lid~~G~i~~~~~g~~~ 155 (163)
.++=||.+|++.|......+
T Consensus 30 vtigide~g~iayisiep~d 49 (62)
T PHA02762 30 VTIGIDENDKISYISIEPLD 49 (62)
T ss_pred EEEeECCCCcEEEEEecccc
Confidence 46778999999998665443
No 340
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=22.97 E-value=2.2e+02 Score=23.67 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=34.1
Q ss_pred CcEEEEEecc--C--CCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 32 GKVLLIVNVA--S--KCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 32 gk~vlv~f~~--s--~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
+||-+|+|+- + .-...+..+..+.++.+-.+.+||-|+.|+-+
T Consensus 253 dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~ 299 (502)
T PF05872_consen 253 DKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQN 299 (502)
T ss_pred CCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCC
Confidence 4899999984 3 23456777889999999999999999999853
No 341
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=22.91 E-value=69 Score=18.03 Aligned_cols=16 Identities=6% Similarity=0.121 Sum_probs=10.7
Q ss_pred eccCCCCCChhhHHHH
Q 031257 39 NVASKCGMTNSNYIEL 54 (163)
Q Consensus 39 f~~s~C~~C~~~~~~l 54 (163)
+...+||+|.+.--.|
T Consensus 4 y~~~~~p~~~rvr~~L 19 (71)
T cd03037 4 YIYEHCPFCVKARMIA 19 (71)
T ss_pred EecCCCcHhHHHHHHH
Confidence 4467899998654444
No 342
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=22.86 E-value=2.3e+02 Score=18.63 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCCCCC-------CCCHHHHHHHHHhhcCCcccee
Q 031257 54 LSQLYDKYKDQGLEILAFPCNQFGEEE-------PGSNDQIADFVCTRFKSEFPIF 102 (163)
Q Consensus 54 l~~~~~~~~~~~~~ii~is~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 102 (163)
..+..++++++|..|+.+|........ ..+-....+|+. +++++|--+
T Consensus 29 ~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~-k~~ipYd~l 83 (126)
T TIGR01689 29 VIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLN-QHNVPYDEI 83 (126)
T ss_pred HHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHH-HcCCCCceE
Confidence 334444444567889888864211100 011136688887 788888655
No 343
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=22.66 E-value=1.1e+02 Score=22.25 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCcc
Q 031257 51 YIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEF 99 (163)
Q Consensus 51 ~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (163)
.|.+.++.+.++.+|..+.-|| ..-..+..++++..++++
T Consensus 90 T~Gi~eLv~~L~~~~~~v~liS---------GGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 90 TPGIRELVSRLHARGTQVYLIS---------GGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred CCCHHHHHHHHHHcCCeEEEEc---------CChHHHHHHHHHHhCCcH
Confidence 4667788888888999999998 356677778877777776
No 344
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=22.64 E-value=2.3e+02 Score=18.44 Aligned_cols=56 Identities=9% Similarity=0.029 Sum_probs=41.7
Q ss_pred EEEEEeccCCCCCChhhHHHHHHHHHHhcCC-CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 031257 34 VLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS 97 (163)
Q Consensus 34 ~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~-~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~ 97 (163)
..++.|--...|...+.++-++++++++... ++.||-|.-| .-.-+..|..+.+++
T Consensus 22 ~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD--------~FPllv~yWektF~I 78 (120)
T cd03074 22 IHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPD--------DFPLLVPYWEKTFGI 78 (120)
T ss_pred ceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCc--------cCchhhHHHHhhcCc
Confidence 5667777778899999999999999999875 6999999754 344555666544444
No 345
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.46 E-value=2.1e+02 Score=22.36 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=26.0
Q ss_pred cccCCcEEEEEeccC----CCCCChhhHHHHHHHHHHhcC
Q 031257 28 STYKGKVLLIVNVAS----KCGMTNSNYIELSQLYDKYKD 63 (163)
Q Consensus 28 ~~~~gk~vlv~f~~s----~C~~C~~~~~~l~~~~~~~~~ 63 (163)
...++-.+++.|-|. .|..|..+..+++-+.+.+..
T Consensus 56 ~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~ 95 (331)
T KOG2603|consen 56 PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRY 95 (331)
T ss_pred CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhc
Confidence 333444566666663 699999999999988887754
No 346
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=22.40 E-value=1e+02 Score=17.79 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=10.2
Q ss_pred EEECCCCcEEEEeCC
Q 031257 138 FLVDKNGQVVDRYYP 152 (163)
Q Consensus 138 ~lid~~G~i~~~~~g 152 (163)
=|+|.+|+++.+-..
T Consensus 44 ~I~d~~G~viGkae~ 58 (64)
T PF12396_consen 44 DILDKDGNVIGKAEP 58 (64)
T ss_pred CEECCCCCEEEEEEe
Confidence 477778888776443
No 347
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=22.36 E-value=2.1e+02 Score=17.79 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCc
Q 031257 51 YIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSE 98 (163)
Q Consensus 51 ~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~ 98 (163)
+|.-.++.+.++++|..++.++-+ ...+.+++.+.++ ..+++
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNn-----s~~s~~~~~~~L~-~~Gi~ 57 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNN-----SSRSREEYAKKLK-KLGIP 57 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES------SSS-HHHHHHHHH-HTTTT
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCC-----CCCCHHHHHHHHH-hcCcC
Confidence 344445555556667788888732 3466678877776 66665
No 348
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=22.02 E-value=1.2e+02 Score=18.62 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=14.4
Q ss_pred eEEEECCCCcEEEEeCCC
Q 031257 136 AKFLVDKNGQVVDRYYPT 153 (163)
Q Consensus 136 ~~~lid~~G~i~~~~~g~ 153 (163)
..++.||+|+.+....+.
T Consensus 101 ~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 101 GFRFFDPDGRLIEFSADV 118 (120)
T ss_pred EEEEECCCCCEEEEEecc
Confidence 568999999999776553
No 349
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=21.79 E-value=2.1e+02 Score=22.55 Aligned_cols=98 Identities=18% Similarity=0.280 Sum_probs=56.9
Q ss_pred CCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCccceeeeeecCCC
Q 031257 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (163)
Q Consensus 31 ~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (163)
.++|.++.|.+-.-.-=. ..+.+++..|+..|..++-...|.|+. ...+.++.|.. +.+. +++ ....+.
T Consensus 136 ~~~p~Vil~vGVNG~GKT---TTIaKLA~~l~~~g~~VllaA~DTFRA---aAiEQL~~w~e-r~gv--~vI--~~~~G~ 204 (340)
T COG0552 136 EKKPFVILFVGVNGVGKT---TTIAKLAKYLKQQGKSVLLAAGDTFRA---AAIEQLEVWGE-RLGV--PVI--SGKEGA 204 (340)
T ss_pred CCCcEEEEEEecCCCchH---hHHHHHHHHHHHCCCeEEEEecchHHH---HHHHHHHHHHH-HhCC--eEE--ccCCCC
Confidence 457888888876543322 346677777777888998888886544 35667777775 6555 444 211222
Q ss_pred cc-hhHHHHhHhCCCcccCCccccCeeEEEECCCCcEE
Q 031257 111 HA-SPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVV 147 (163)
Q Consensus 111 ~~-~~~~~~~~~~~~~~~~~~ip~~~~~~lid~~G~i~ 147 (163)
.. .-.|........ .++ -.+|||=-||.-
T Consensus 205 DpAaVafDAi~~Aka----r~~----DvvliDTAGRLh 234 (340)
T COG0552 205 DPAAVAFDAIQAAKA----RGI----DVVLIDTAGRLH 234 (340)
T ss_pred CcHHHHHHHHHHHHH----cCC----CEEEEeCccccc
Confidence 22 222332211110 222 478999888874
No 350
>PRK08244 hypothetical protein; Provisional
Probab=21.68 E-value=92 Score=25.38 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=26.7
Q ss_pred ccCCCcccceEEecCCCCeeecccc--CCcEEEEEecc
Q 031257 6 IQNPESIFDLSVKDARGHEVDLSTY--KGKVLLIVNVA 41 (163)
Q Consensus 6 ~~~~~~~p~f~l~~~~G~~~~l~~~--~gk~vlv~f~~ 41 (163)
+.+|..+|+..+...+|...++.++ .|+++|+.|-.
T Consensus 391 ~~~G~r~p~~~~~~~~~~~~~l~~~~~~~~~~ll~~~~ 428 (493)
T PRK08244 391 PLNGKRLPDLELTLSDGESERLYSLLHKGTFLLLSFGS 428 (493)
T ss_pred CCCCCCCCCcceecCCCCceeHHHhhcCCeEEEEEecC
Confidence 3578999998887667776777776 34688887754
No 351
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=21.67 E-value=78 Score=17.73 Aligned_cols=17 Identities=12% Similarity=-0.023 Sum_probs=11.7
Q ss_pred EeccCCCCCChhhHHHH
Q 031257 38 VNVASKCGMTNSNYIEL 54 (163)
Q Consensus 38 ~f~~s~C~~C~~~~~~l 54 (163)
.|...+||.|....-.+
T Consensus 3 ly~~~~~~~~~~v~~~l 19 (73)
T cd03059 3 LYSGPDDVYSHRVRIVL 19 (73)
T ss_pred EEECCCChhHHHHHHHH
Confidence 34567899998776554
No 352
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=21.64 E-value=1.4e+02 Score=18.89 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=18.8
Q ss_pred EEEeccCCCCCChhhH-HHHHHHH--HHhcCC
Q 031257 36 LIVNVASKCGMTNSNY-IELSQLY--DKYKDQ 64 (163)
Q Consensus 36 lv~f~~s~C~~C~~~~-~~l~~~~--~~~~~~ 64 (163)
|-.|+-|-||.|+..+ ..|...+ .++.+.
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~ 34 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFPVWTYEKLSDI 34 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHHHHHHhhccce
Confidence 4456789999999874 4465533 444443
No 353
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=21.28 E-value=3.3e+02 Score=20.21 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCCeEEEEEecC
Q 031257 52 IELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 52 ~~l~~~~~~~~~~~~~ii~is~d 74 (163)
..|.++-.++.+.|+.|+++.+|
T Consensus 196 ~~l~~iI~~l~~~g~~VvAivsD 218 (236)
T PF12017_consen 196 DILKNIIEKLHEIGYNVVAIVSD 218 (236)
T ss_pred HHHHHHHHHHHHCCCEEEEEECC
Confidence 44566667777788999999887
No 354
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=20.69 E-value=99 Score=16.51 Aligned_cols=15 Identities=27% Similarity=0.585 Sum_probs=11.7
Q ss_pred CccccCeeEEEECCCCcEEE
Q 031257 129 DDIQWNFAKFLVDKNGQVVD 148 (163)
Q Consensus 129 ~~ip~~~~~~lid~~G~i~~ 148 (163)
.+|| |+++++|+.+-
T Consensus 27 ~Gi~-----~~~~~~G~p~V 41 (47)
T PF13986_consen 27 NGIP-----FVVRADGRPIV 41 (47)
T ss_pred CCCe-----eEECCCCCEEe
Confidence 5676 89999997764
No 355
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=20.56 E-value=42 Score=18.99 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=7.9
Q ss_pred CCCCChhhHHHH
Q 031257 43 KCGMTNSNYIEL 54 (163)
Q Consensus 43 ~C~~C~~~~~~l 54 (163)
=||.|++....|
T Consensus 46 VCP~Ck~iye~l 57 (58)
T PF11238_consen 46 VCPECKEIYESL 57 (58)
T ss_pred CCcCHHHHHHhc
Confidence 477887766554
No 356
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=20.30 E-value=2.4e+02 Score=20.87 Aligned_cols=62 Identities=11% Similarity=0.020 Sum_probs=47.2
Q ss_pred cceEEecCCCCeeeccccCCcEEEEEec-cCCCCCChhhHHHHHHHHHHhcCCCeEEEEEecC
Q 031257 13 FDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (163)
Q Consensus 13 p~f~l~~~~G~~~~l~~~~gk~vlv~f~-~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~d 74 (163)
|.+.+.-.|++.+--..+..+..++.|. +..-|+|+...+...+.-..+-.+|=.++||+..
T Consensus 29 p~y~v~~V~~~~Li~EpW~~~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG 91 (253)
T COG4285 29 PYYAVDRVDAQFLIKEPWEETTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAG 91 (253)
T ss_pred chheEEEeeeheeecCcchhceEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEecc
Confidence 3356666788766555577777788887 5777899888888888888888888899999864
No 357
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=20.24 E-value=3.1e+02 Score=20.55 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=27.4
Q ss_pred cCCcEEEEEeccCCCCCChhhHHHHHHHHHHhcCCCeEEEEEec
Q 031257 30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (163)
Q Consensus 30 ~~gk~vlv~f~~s~C~~C~~~~~~l~~~~~~~~~~~~~ii~is~ 73 (163)
|++.++||++-.- ...+. ...+..+.+.++..|+.+|||.-
T Consensus 48 F~~~PvVlDl~~l-~~~~~--~~dl~~L~~~Lr~~gl~~vGV~g 88 (248)
T PRK04596 48 FGRAAVILDFGGL-SQVPD--LATAKALLDGLRSAGVLPVALAY 88 (248)
T ss_pred hCCCcEEEEchhh-cCccc--cccHHHHHHHHHHCCCEEEEEeC
Confidence 4778999999653 22231 12355566666777899999974
No 358
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=20.18 E-value=3.4e+02 Score=19.50 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCcccee
Q 031257 48 NSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIF 102 (163)
Q Consensus 48 ~~~~~~l~~~~~~~~~~~~~ii~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (163)
....|...++.+.++++|..++-||. +...+.+.+.++.++.+-+.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSg---------g~~~lv~~ia~~lg~d~~~a 121 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISG---------GFTFLVEPIAERLGIDYVVA 121 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcC---------ChHHHHHHHHHHhCCchhee
Confidence 44466777888888888999999984 56677777776777766554
Done!