BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031258
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
L+K+ E+ +LVVVDF + CG C++I F+ L K + V+FLK + L
Sbjct: 31 LQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN----VLFLKVDTDEL 80
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
EF + K+KE G +V++DF + CG C++I F++ K + +FLK +V L
Sbjct: 24 EFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAK----KFPGAVFLKVDVDEL 78
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V + K +F K L ++ LVV+DFY T CG CK I +L + D V+FL
Sbjct: 2 VYQVKDQEDFTKQLNEA--GNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD----VVFL 55
Query: 157 KHNV 160
K +V
Sbjct: 56 KVDV 59
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKL 142
V +FKT +EF + + K LVVVDFY T CG CK I K
Sbjct: 2 VTQFKTASEFDSAIAQDK----LVVVDFYATWCGPCKMIAPMIEKF 43
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKL 142
V +FKT +EF + + K LVVVDFY T CG CK I K
Sbjct: 8 VTQFKTASEFDSAIAQDK----LVVVDFYATWCGPCKMIAPMIEKF 49
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKH 158
E K D + +LE+ K LVVVDF+ T CG CK I F +L ++ IF+K
Sbjct: 8 ELKQDGDLESLLEQHK--NKLVVVDFFATWCGPCKTIAPLFKELS-----EKYDAIFVKV 60
Query: 159 NVSTL 163
+V L
Sbjct: 61 DVDKL 65
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKH 158
E K D + +LE+ K LVVVDF+ T CG CK I F +L ++ IF+K
Sbjct: 17 ELKQDGDLESLLEQHK--NKLVVVDFFATWCGPCKTIAPLFKELS-----EKYDAIFVKV 69
Query: 159 NVSTL 163
+V L
Sbjct: 70 DVDKL 74
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLK 157
L K KE +VVDF T CG CK I F L S D VIFLK
Sbjct: 17 LAKGKEEHKPIVVDFTATWCGPCKMIAPLFETL---SNDYAGKVIFLK 61
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161
T EF + K+TG LV++DF + CG C+ I F++ K + IFLK +V
Sbjct: 13 TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAK----KFPGAIFLKVDVD 68
Query: 162 TL 163
L
Sbjct: 69 EL 70
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 113 SKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
+K +G LVV+DF+ T CG CK I +L D V+ LK +V
Sbjct: 21 TKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDV 65
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 109 ILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
+L + KE LV+VDF+ T CG C+ + Q + + + D V F+K +V
Sbjct: 15 LLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKD----VTFIKVDV 62
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 113 SKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
+K +G LVV+DF+ T CG CK I +L D V+ LK +V
Sbjct: 16 TKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDV 60
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCK 144
V +FKT +EF + + K LVVVDFY T CG K I K +
Sbjct: 8 VTQFKTASEFDSAIAQDK----LVVVDFYATWCGPSKMIAPMIEKFSE 51
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLK 157
L K KE +VV F T CG CK I F L S D VIFLK
Sbjct: 17 LAKGKEEHKPIVVAFTATWCGPCKMIAPLFETL---SNDYAGKVIFLK 61
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
EK K + L+VVDF + C CK I F++L K + V FLK +V L
Sbjct: 19 FEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN----VTFLKVDVDEL 68
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 33.5 bits (75), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCK 144
+R T A+ K++ ++K G L+VVDF+ CG C+ I L K
Sbjct: 1 MRVLATAADLEKLINENK--GRLIVVDFFAQWCGPCRNIAPKVEALAK 46
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
+E++ LVV+DF + CG C+ + F+ L K + +FLK +V L
Sbjct: 27 IEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN----AVFLKVDVDEL 76
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148
+V+DFY T CG CK ++ +KL + D
Sbjct: 33 LVIDFYATWCGPCKMMQPHLTKLIQAYPD 61
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161
LVVVDF T CG CK I+ F L ++ + VIFL+ +V+
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDVN 60
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 32.7 bits (73), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V++ ++ F + L+ + + LVVVDF T CG CK I+ F L ++ + VIFL
Sbjct: 2 VKQIESKTAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFL 55
Query: 157 KHNV 160
+ +V
Sbjct: 56 EVDV 59
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 32.7 bits (73), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
LVVVDF T CG CK I+ F L ++ + VIFL+ +V
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDV 59
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 32.7 bits (73), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
LVVVDF T CG CK I+ F L ++ + VIFL+ +V
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDV 59
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 32.7 bits (73), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
TDA+F SK + +VDF+ T CGSCK I +L + D E LK +V
Sbjct: 9 TDADF-----DSKVESGVQLVDFWATWCGSCKMIAPVLEEL---AADYEGKADILKLDV 59
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 32.7 bits (73), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
LVVVDF T CG CK I+ F L ++ + VIFL+ +V
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDV 59
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 32.7 bits (73), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
LVVVDF T CG CK I+ F L ++ + VIFL+ +V
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDV 59
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 32.7 bits (73), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
LVVVDF T CG CK I+ F L ++ + VIFL+ +V
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDV 59
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 32.7 bits (73), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
LVVVDF T CG CK I+ F L ++ + VIFL+ +V
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDV 59
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
TDA+F SK + +VDF+ T+CG CK I +L + D E LK +V
Sbjct: 9 TDADF-----DSKVESGVQLVDFWATACGPCKMIAPVLEEL---AADYEGKADILKLDV 59
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
TDA+F SK + +VDF+ T CG+CK I +L + D E LK +V
Sbjct: 10 TDADF-----DSKVESGVQLVDFWATWCGTCKMIAPVLEEL---AADYEGKADILKLDV 60
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148
LVVVDF+ T CG CK I K + D
Sbjct: 28 LVVVDFFATWCGPCKMIAPMIEKFAEQYSD 57
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148
LVVVDF+ T CG CK I K + D
Sbjct: 21 LVVVDFFATWCGPCKMIAPMIEKFAEQYSD 50
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLK 157
LVVVDF T CG CK I+ F L ++ + VIFL+
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLE 56
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKL 142
+VV+DF+ T CG CK I F K+
Sbjct: 35 VVVIDFWATWCGPCKMIGPVFEKI 58
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
TDA+F SK + +VDF+ T CG CK I +L + D E LK +V
Sbjct: 10 TDADF-----DSKVESGVQLVDFWATWCGPCKMIAPVLEEL---AADYEGKADILKLDV 60
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 109 ILEKSKETGSLVVVDFYRTSCGSCK 133
+++ S +TGS+V +DF+ + CG C+
Sbjct: 20 VVKLSDKTGSVVYLDFWASWCGPCR 44
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
LVVVDF T CG K I+ F L + + VIFL+ +V
Sbjct: 22 LVVVDFSATWCGPAKMIKPFFHSLSEKYSN----VIFLEVDV 59
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 115 ETGSLVVVDFYRTSCGSCKYIEQGFSKLCKG-SG--------DQEAPVIFLKHNVSTL 163
E+ V+VDF+ CG CK I +L K SG EAP I ++N+ ++
Sbjct: 15 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSI 72
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 115 ETGSLVVVDFYRTSCGSCKYIEQGFSKLCKG-SG--------DQEAPVIFLKHNVSTL 163
E+ V+VDF+ CG CK I +L K SG EAP I ++N+ ++
Sbjct: 16 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSI 73
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
LVVVDF T CG K I+ F L + + VIFL+ +V
Sbjct: 22 LVVVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEVDV 59
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
+E++ LVV+DF + CG + + F+ L K + +FLK +V L
Sbjct: 30 IEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPN----AVFLKVDVDEL 79
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
TDA F + ++ K V+VDF+ CG C+ + + + D+ V K NV
Sbjct: 6 TDANFQQAIQGDKP----VLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNV 57
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
TDA F + ++ K V+VDF+ CG C+ + + + D+ V K NV
Sbjct: 6 TDANFQQAIQGDKP----VLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNV 57
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
LVVVDF T CG K I+ F L ++ + VIFL+ +V
Sbjct: 22 LVVVDFSATWCGPSKMIKPFFHSL----SEKYSNVIFLEVDV 59
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162
+++V+FY CG CK + + K K + P+ K + +
Sbjct: 147 ADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA 192
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162
V+++FY CG CK + K+ D++ P+ K + ++
Sbjct: 35 VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS 77
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
LVVVDF T CG K I+ F L ++ + VIFL+ +V
Sbjct: 33 LVVVDFSATWCGPSKMIKPFFHSL----SEKYSNVIFLEVDV 70
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 102 TDAEFFK-ILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLC 143
TDA F +L +K V+VDF+ T CG CK + ++
Sbjct: 13 TDASFATDVLSSNKP----VLVDFWATWCGPCKMVAPVLEEIA 51
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 102 TDAEFFK-ILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLC 143
TDA F +L +K V+VDF+ T CG CK + ++
Sbjct: 18 TDASFATDVLSSNKP----VLVDFWATWCGPCKMVAPVLEEIA 56
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162
V+++FY CG CK + K+ D + P+ K + ++
Sbjct: 37 VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS 79
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCK 144
LV+VDF+ CG CK I ++ K
Sbjct: 22 LVLVDFWAEWCGPCKMIGPALGEIGK 47
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVI 154
V V+FY CG CK + + KL + D E VI
Sbjct: 270 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVI 304
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYI 135
V+ + AEF I+ +++ LV+VDF+ CG CK I
Sbjct: 10 VKIVTSQAEFDSIISQNE----LVIVDFFAEWCGPCKRI 44
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVI 154
V V+FY CG CK + + KL + D E VI
Sbjct: 28 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVI 62
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148
LVVVDF+ T CG K I K + D
Sbjct: 21 LVVVDFFATWCGPSKMIAPMIEKFAEQYSD 50
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
TDA+F SK + +VDF+ T CG+ K I +L + D E LK +V
Sbjct: 10 TDADF-----DSKVESGVQLVDFWATWCGTSKMIAPVLEEL---AADYEGKADILKLDV 60
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161
+++V+FY CG CK + + K K + P+ K + +
Sbjct: 26 IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT 68
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148
LVVVDF+ T CG K I K + D
Sbjct: 29 LVVVDFFATWCGPSKMIAPMIEKFAEQYSD 58
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 102 TDAEFFKIL----EKSKETGSL----VVVDFYRTSCGSCKYIEQGFSKLCK 144
T AEF K + SKE L +VDFY CG CK + +L K
Sbjct: 28 TRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSK 78
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHN 159
VV+D + CG CK + + KL + D VIFLK +
Sbjct: 40 VVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLD 75
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHN 159
VV+D + CG CK + + KL + D VIFLK +
Sbjct: 28 VVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLD 63
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 102 TDAEFFKIL----EKSKETGSL----VVVDFYRTSCGSCKYIEQGFSKLCK 144
T AEF K + SKE L +VDFY CG CK + +L K
Sbjct: 28 TRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSK 78
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
+ EF+ D + + +E SK+ VVV FY +C CK E F + K G +F
Sbjct: 8 IIEFE-DXTWSQQVEDSKKP---VVVXFYSPACPYCKAXEPYFEEYAKEYGSS---AVFG 60
Query: 157 KHNVST 162
+ N++T
Sbjct: 61 RINIAT 66
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVI 154
V+++FY CG CK +E ++ L K Q+ VI
Sbjct: 28 VLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVI 62
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCK 144
TD F + + KS + V+VDF+ CG C+ I +L K
Sbjct: 7 TDENFEQEVLKSDKP---VLVDFWAPWCGPCRMIAPIIEELAK 46
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKL 142
V+++FY CG CK +E + +L
Sbjct: 48 VLIEFYAPWCGHCKNLEPKYKEL 70
>pdb|1P8C|A Chain A, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
pdb|1P8C|B Chain B, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
pdb|1P8C|C Chain C, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
pdb|1P8C|D Chain D, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
pdb|1P8C|E Chain E, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
pdb|1P8C|F Chain F, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
Length = 145
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 73 KVKGLIDATQGESDEDDDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCG 130
++ GL+ +T D+ V CV+E +D E F+ L+ + G +V+ R + G
Sbjct: 69 ELMGLVASTVLRCDDCIRYHLVRCVQEGASDEEIFEALDIALVVGGSIVIPHLRRAVG 126
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKL 142
V+++FY CG CK +E + +L
Sbjct: 373 VLIEFYAPWCGHCKNLEPKYKEL 395
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 86 DEDDDLCPVEC----VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSK 141
D DDD +E V T + + L ++ G +V+ +F CG CK I + +
Sbjct: 11 DADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIE 70
Query: 142 LCKG 145
L +
Sbjct: 71 LSEN 74
>pdb|1VKE|A Chain A, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
pdb|1VKE|B Chain B, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
pdb|1VKE|C Chain C, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
pdb|1VKE|D Chain D, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
pdb|1VKE|E Chain E, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
pdb|1VKE|F Chain F, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
Length = 133
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 68 NLRHGKVKGLIDATQGESDEDDDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRT 127
+++ ++ GL+ +T D+ V CV+E +D E F+ L+ + G +V+ R
Sbjct: 54 DVKTKELMGLVASTVLRCDDCIRYHLVRCVQEGASDEEIFEALDIALVVGGSIVIPHLRR 113
Query: 128 SCG 130
+ G
Sbjct: 114 AVG 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,697,137
Number of Sequences: 62578
Number of extensions: 179371
Number of successful extensions: 504
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 77
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)