BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031258
(163 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C5C5|TRL4_ARATH Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana
GN=At1g07700 PE=2 SV=1
Length = 204
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/93 (76%), Positives = 75/93 (80%), Gaps = 1/93 (1%)
Query: 69 LRHGKVKGLIDATQGE-SDEDDDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRT 127
L+ G K L E SDE+DDLCPVECV EFKTD E +LEKSKET SLVVVDFYRT
Sbjct: 58 LQRGIAKSLSQENLVELSDENDDLCPVECVTEFKTDDELLSVLEKSKETNSLVVVDFYRT 117
Query: 128 SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
+CGSCKYIEQGFSKLCK SGDQEAPVIFLKHNV
Sbjct: 118 ACGSCKYIEQGFSKLCKQSGDQEAPVIFLKHNV 150
>sp|Q6YTI3|TRL4_ORYSJ Thioredoxin-like 4, chloroplastic OS=Oryza sativa subsp. japonica
GN=Os02g0567100 PE=2 SV=1
Length = 214
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 54/64 (84%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V EFKT+ E ++LE++K TG+LVVVDF+R SCGSCKYIEQGF KLCKGSGD + V+FL
Sbjct: 85 VTEFKTEEELARVLERAKATGALVVVDFFRPSCGSCKYIEQGFMKLCKGSGDHGSSVVFL 144
Query: 157 KHNV 160
KHNV
Sbjct: 145 KHNV 148
>sp|Q5WNE3|NGLY1_CAEBR Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1
Length = 602
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
VRE E +ILEKS ++ L++VDF+ CG C+ I F +L G+ FL
Sbjct: 3 VREVSRLPELNEILEKS-DSNRLIIVDFFANWCGPCRMISPAFERLSMEFGN----ATFL 57
Query: 157 KHN 159
K N
Sbjct: 58 KVN 60
>sp|Q8LEK4|TRL21_ARATH Thioredoxin-like 2-1, chloroplastic OS=Arabidopsis thaliana
GN=At4g26160 PE=2 SV=2
Length = 221
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 102 TDAEFFKILEKSKETGS-LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHN 159
T AE F L K+ G LV+VDFY T CGSC+ + F KLCK + + ++FLK N
Sbjct: 99 TSAEQF--LNALKDAGDRLVIVDFYGTWCGSCRAM---FPKLCK-TAKEHPNILFLKVN 151
>sp|P29448|TRXH1_ARATH Thioredoxin H1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1
Length = 114
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
L+K+ E+ +LVVVDF + CG C++I F+ L K + V+FLK + L
Sbjct: 21 LQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN----VLFLKVDTDEL 70
>sp|A2YIW7|TRXH_ORYSI Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1
Length = 122
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
EF + K+KE G +V++DF + CG C++I F++ K + +FLK +V L
Sbjct: 16 EFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAK----KFPGAVFLKVDVDEL 70
>sp|Q0D840|TRXH1_ORYSJ Thioredoxin H1 OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1
Length = 122
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
EF + K+KE G +V++DF + CG C++I F++ K + +FLK +V L
Sbjct: 16 EFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAK----KFPGAVFLKVDVDEL 70
>sp|P22217|TRX1_YEAST Thioredoxin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TRX1 PE=1 SV=3
Length = 103
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKL 142
V +FKT +EF + + K LVVVDFY T CG CK I K
Sbjct: 2 VTQFKTASEFDSAIAQDK----LVVVDFYATWCGPCKMIAPMIEKF 43
>sp|P80028|TRXH_CHLRE Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3
Length = 113
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLK 157
L K KE +VVDF T CG CK I F L S D VIFLK
Sbjct: 18 LAKGKEEHKPIVVDFTATWCGPCKMIAPLFETL---SNDYAGKVIFLK 62
>sp|P29449|TRXH1_TOBAC Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1
Length = 126
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
E+FK K ET LVVVDF + CG C++I + + K + VIFLK +V L
Sbjct: 25 EYFK---KGVETKKLVVVDFTASWCGPCRFIAPILADIAK----KMPHVIFLKVDVDEL 76
>sp|O64432|TRXH_BRARA Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1
Length = 123
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
L+ +KE+ L+V+DF C C++I F +L K D V+F K +V L
Sbjct: 26 LKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLD----VVFFKVDVDEL 75
>sp|P68176|TRXH_BRAOL Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1
Length = 123
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
L+ +KE+ L+V+DF C C++I F +L K D V+F K +V L
Sbjct: 26 LKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLD----VVFFKVDVDEL 75
>sp|P68177|TRXH1_BRANA Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1
Length = 123
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
L+ +KE+ L+V+DF C C++I F +L K D V+F K +V L
Sbjct: 26 LKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLD----VVFFKVDVDEL 75
>sp|Q42403|TRXH3_ARATH Thioredoxin H3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1
Length = 118
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
L+ + E+ L+V+DF T C C++I F+ L K D V+F K +V L
Sbjct: 20 LKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLD----VVFFKVDVDEL 69
>sp|P08629|THIO_CHICK Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2
Length = 105
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
LVVVDF T CG CK I+ F LC GD V+F++ +V
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLCDKFGD----VVFIEIDV 59
>sp|Q6XHI1|THIO2_DROYA Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1
Length = 106
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 113 SKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
+K +G LVV+DF+ T CG CK I ++L D V+ LK +V
Sbjct: 16 TKASGKLVVLDFFATWCGPCKMISPKLAELSTQYADT---VVVLKVDV 60
>sp|Q43636|TRXH_RICCO Thioredoxin H-type OS=Ricinus communis PE=3 SV=1
Length = 118
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
L+K +T L+VVDF + CG C++I ++L K + V FLK +V L
Sbjct: 21 LQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPN----VTFLKVDVDEL 70
>sp|P11232|THIO_RAT Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2
Length = 105
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
LVVVDF T CG CK I+ F LC D+ + V+FL+ +V
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLC----DKYSNVVFLEVDV 59
>sp|P10639|THIO_MOUSE Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3
Length = 105
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
LVVVDF T CG CK I+ F LC D+ + V+FL+ +V
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLC----DKYSNVVFLEVDV 59
>sp|Q8LCT3|TRL22_ARATH Thioredoxin-like 2-2, chloroplastic OS=Arabidopsis thaliana
GN=At4g29670 PE=2 SV=2
Length = 236
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHN 159
EF L + E LV+V+FY T C SC+ + F KLCK + + ++FLK N
Sbjct: 113 EFLSALSGAGE--RLVIVEFYGTWCASCRAL---FPKLCKTAVEHPD-IVFLKVN 161
>sp|Q9UW02|THIO_COPCM Thioredoxin OS=Coprinus comatus PE=1 SV=1
Length = 106
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 112 KSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162
K +G ++++DF+ T CG C+ I F K + G ++F K +V T
Sbjct: 13 KLTNSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANN--IVFAKVDVDT 61
>sp|Q6Z4I3|TRH21_ORYSJ Thioredoxin H2-1 OS=Oryza sativa subsp. japonica GN=Os07g0190800
PE=2 SV=1
Length = 138
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
A++ ++ + K T LVV+DF + CG CK +E F ++ D V FLK +V L
Sbjct: 30 AKWDELWDAHKNTTKLVVIDFSASWCGPCKMMEPVFKEMAGRFTD----VAFLKVDVDEL 85
>sp|Q96419|TRXH_FAGES Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1
Length = 116
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCK 144
T E+ + +K+K++G L+V+DF + CG C+ I S+L K
Sbjct: 12 TVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAK 54
>sp|Q5JMR9|TRXY_ORYSJ Thioredoxin Y, chloroplastic OS=Oryza sativa subsp. japonica
GN=Os01g0963400 PE=2 SV=2
Length = 168
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQ 149
+T + F ++LEKS++ V+VDFY T CG C+Y+ ++ + GD+
Sbjct: 64 QTFSSFDELLEKSEKP---VLVDFYATWCGPCQYMVPILQEVSEKLGDK 109
>sp|Q9V429|THIO2_DROME Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2
Length = 114
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 113 SKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
+K +G LVV+DF+ T CG CK I +L D V+ LK +V
Sbjct: 24 TKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDV 68
>sp|Q07090|TRXH2_TOBAC Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1
Length = 118
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
L+K + L+VVDF + CG CK+I +++L K + V FLK +V L
Sbjct: 20 LQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAK----KMPTVTFLKVDVDEL 69
>sp|Q5TKD8|TRL2_ORYSJ Thioredoxin-like 2, chloroplastic OS=Oryza sativa subsp. japonica
GN=Os05g0200100 PE=2 SV=1
Length = 216
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Query: 108 KILEKSKETGS-LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHN 159
+ L+ ++ G LV+V+FY T CGSC+ + F +LC+ + + ++FLK N
Sbjct: 89 EFLDALRDAGDRLVIVEFYGTWCGSCRAL---FPRLCRTAVENPD-ILFLKVN 137
>sp|Q9CAS1|TRXH8_ARATH Thioredoxin H8 OS=Arabidopsis thaliana GN=TRX8 PE=2 SV=1
Length = 148
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIF 155
C+ E K ++ L K+T L+V++F CG CK +E +L D E F
Sbjct: 38 CIVEIKNMNQWKSRLNALKDTNKLLVIEFTAKWCGPCKTLEPKLEELAAKYTDVE----F 93
Query: 156 LKHNVSTL 163
+K +V L
Sbjct: 94 VKIDVDVL 101
>sp|P34723|THIO_PENCH Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1
Length = 106
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 91 LCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCK 144
+ P++ V E+K EK + VVVDF+ T CG CK I KL +
Sbjct: 3 VTPIKSVAEYK---------EKVTDATGPVVVDFHATWCGPCKAIAPALEKLSE 47
>sp|Q851R5|TRH22_ORYSJ Thioredoxin H2-2 OS=Oryza sativa subsp. japonica GN=Os03g0800700
PE=2 SV=1
Length = 134
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
L+V+DF T CG C++IE F + D +F K +V L
Sbjct: 46 LIVIDFSATWCGPCRFIEPAFKDMAGRFAD----AVFFKIDVDEL 86
>sp|Q39239|TRXH4_ARATH Thioredoxin H4 OS=Arabidopsis thaliana GN=TRX4 PE=3 SV=2
Length = 119
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCK 144
L+K+KE+ L+V+DF + C C+ I F+ L K
Sbjct: 21 LDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAK 55
>sp|Q8IFW4|THIOT_DROME Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=2 SV=1
Length = 157
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161
LVV+DFY CG CK I +L D+ V+ LK NV
Sbjct: 22 LVVIDFYADWCGPCKIIAPKLDELAHEYSDR---VVVLKVNVD 61
>sp|O65049|TRXH_PICMA Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1
Length = 125
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
L+++ +T LV VDF T CG C+ I F +L K + + FLK +V L
Sbjct: 19 LQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPE----IFFLKVDVDEL 68
>sp|O83889|THIO_TREPA Thioredoxin OS=Treponema pallidum (strain Nichols) GN=trxA PE=3
SV=1
Length = 105
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYI 135
+ K+ ET LV+VDF+ CGSCK +
Sbjct: 11 VRKTIETNPLVIVDFWAPWCGSCKML 36
>sp|O14463|TRX1_SCHPO Thioredoxin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=trx1 PE=3 SV=3
Length = 103
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V++ +EF I+ + K LVVVDF+ T CG CK I F + D F+
Sbjct: 2 VKQVSDSSEFKSIVCQDK----LVVVDFFATWCGPCKAIAPKFEQFSNTYSD----ATFI 53
Query: 157 KHNVSTL 163
K +V L
Sbjct: 54 KVDVDQL 60
>sp|Q38879|TRXH2_ARATH Thioredoxin H2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2
Length = 133
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V +F + A + + KE+ L+VVDF + CG C+ IE + D V F+
Sbjct: 27 VLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFND----VDFV 82
Query: 157 KHNVSTL 163
K +V L
Sbjct: 83 KLDVDEL 89
>sp|P25372|TRX3_YEAST Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=TRX3 PE=1 SV=1
Length = 127
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148
+V+DFY T CG CK ++ +KL + D
Sbjct: 46 LVIDFYATWCGPCKMMQPHLTKLIQAYPD 74
>sp|Q4JQU6|DNBI_VZVO Major DNA-binding protein OS=Varicella-zoster virus (strain Oka
vaccine) GN=DBP PE=3 SV=1
Length = 1199
Score = 33.5 bits (75), Expect = 0.67, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 10 GALFGG-----RNADGKFSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKST 58
GA GG + G F S++PC + H CA + R R R+P ++T
Sbjct: 474 GAFTGGHGDALKYVTGTFDSEIPCSLCEKHTRPVCAHTTVHRLRQRMPRFGQAT 527
>sp|P09246|DNBI_VZVD Major DNA-binding protein OS=Varicella-zoster virus (strain Dumas)
GN=DBP PE=3 SV=1
Length = 1204
Score = 33.5 bits (75), Expect = 0.67, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 10 GALFGG-----RNADGKFSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKST 58
GA GG + G F S++PC + H CA + R R R+P ++T
Sbjct: 474 GAFTGGHGDALKYVTGTFDSEIPCSLCEKHTRPVCAHTTVHRLRQRMPRFGQAT 527
>sp|P29451|THIO_MACMU Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2
Length = 105
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V++ ++ A F + L+ + + LVVVDF T CG CK I+ F L ++ + V+FL
Sbjct: 2 VKQIESKAAFQEALDDAGD--KLVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVVFL 55
Query: 157 KHNV 160
+ +V
Sbjct: 56 EVDV 59
>sp|O30974|THIO_MYCSM Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=3 SV=1
Length = 112
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQ 149
V+VDF+ T CG CK + ++ GDQ
Sbjct: 26 VLVDFWATWCGPCKMVAPVLEEIAAEKGDQ 55
>sp|Q9DGI3|THIO_ICTPU Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1
Length = 107
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
LVVVDF T CG C+ I F L K Q V+FLK +V
Sbjct: 22 LVVVDFTATWCGPCQKIGPIFETLSKSEDYQN--VVFLKVDV 61
>sp|O97508|THIO_HORSE Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3
Length = 105
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V++ ++ + F + L + E LVVVDF T CG CK I+ F L ++ + V+FL
Sbjct: 2 VKQIESKSAFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVVFL 55
Query: 157 KHNV 160
+ +V
Sbjct: 56 EVDV 59
>sp|P10599|THIO_HUMAN Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3
Length = 105
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
LVVVDF T CG CK I+ F L ++ + VIFL+ +V
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDV 59
>sp|Q5R9M3|THIO_PONAB Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3
Length = 106
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
LVVVDF T CG CK I+ F L ++ + VIFL+ +V
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDV 59
>sp|O64394|TRXH_WHEAT Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3
Length = 127
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
+E++ LVV+DF + CG C+ + F+ L K + +FLK +V L
Sbjct: 33 IEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAK----KFPAAVFLKVDVDEL 82
>sp|Q9TW67|NGLY1_CAEEL Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Caenorhabditis elegans GN=png-1 PE=1 SV=1
Length = 606
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V E + E ILE+S + L+++DF+ CG C+ I F + G+ FL
Sbjct: 3 VTEVGSLPELNNILERS-DANRLIIIDFFANWCGPCRMISPIFEQFSAEYGN----ATFL 57
Query: 157 KHN 159
K N
Sbjct: 58 KVN 60
>sp|Q39362|TRXH2_BRANA Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1
Length = 119
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCK 144
L+ +K++ L+V+DF + C C+ I F+ L K
Sbjct: 21 LDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAK 55
>sp|O96952|THIO_GEOCY Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1
Length = 106
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 97 VREFKTDAEFFKILEKSKETGS-LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIF 155
V KT A+F + L K+ G LVV+DF + CG C+ I + ++ K D VIF
Sbjct: 2 VNFLKTKADFDQAL---KDAGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPD----VIF 54
Query: 156 LKHNV 160
K +V
Sbjct: 55 YKVDV 59
>sp|Q39241|TRXH5_ARATH Thioredoxin H5 OS=Arabidopsis thaliana GN=TRX5 PE=1 SV=1
Length = 118
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163
++ + E+ L+V+DF + C C++I F+++ K + V+F K +V L
Sbjct: 20 VKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTN----VVFFKIDVDEL 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,621,344
Number of Sequences: 539616
Number of extensions: 2293419
Number of successful extensions: 5841
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 5773
Number of HSP's gapped (non-prelim): 122
length of query: 163
length of database: 191,569,459
effective HSP length: 108
effective length of query: 55
effective length of database: 133,290,931
effective search space: 7331001205
effective search space used: 7331001205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)