Query 031258
Match_columns 163
No_of_seqs 277 out of 1487
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 11:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 99.9 3.2E-22 6.8E-27 174.1 7.1 139 16-162 278-428 (493)
2 KOG0907 Thioredoxin [Posttrans 99.7 2.7E-16 5.8E-21 112.4 6.6 56 103-162 7-62 (106)
3 cd02954 DIM1 Dim1 family; Dim1 99.6 3.7E-16 7.9E-21 113.0 7.2 56 103-163 2-57 (114)
4 KOG0910 Thioredoxin-like prote 99.6 3.3E-16 7.1E-21 117.4 6.6 60 97-162 44-103 (150)
5 PLN00410 U5 snRNP protein, DIM 99.6 6.7E-16 1.5E-20 115.6 7.0 62 97-163 5-66 (142)
6 PTZ00102 disulphide isomerase; 99.6 1.6E-15 3.4E-20 131.6 8.2 137 17-162 271-419 (477)
7 cd02985 TRX_CDSP32 TRX family, 99.6 2.1E-15 4.5E-20 106.4 6.9 55 102-162 2-56 (103)
8 cd02986 DLP Dim1 family, Dim1- 99.6 2.6E-15 5.6E-20 108.3 7.0 56 103-163 2-57 (114)
9 cd03006 PDI_a_EFP1_N PDIa fami 99.6 3.7E-15 8E-20 107.6 6.9 63 95-162 9-71 (113)
10 PHA02278 thioredoxin-like prot 99.6 3.1E-15 6.7E-20 106.3 6.4 54 102-162 3-56 (103)
11 cd03003 PDI_a_ERdj5_N PDIa fam 99.6 9.5E-15 2.1E-19 102.0 7.0 55 101-162 6-60 (101)
12 cd02948 TRX_NDPK TRX domain, T 99.6 1.2E-14 2.7E-19 102.2 7.2 57 99-161 3-59 (102)
13 KOG0908 Thioredoxin-like prote 99.5 6.7E-15 1.5E-19 118.2 5.4 62 96-163 2-63 (288)
14 cd03004 PDI_a_ERdj5_C PDIa fam 99.5 3.3E-14 7.1E-19 99.6 7.0 56 101-162 6-61 (104)
15 COG3118 Thioredoxin domain-con 99.5 2.5E-14 5.4E-19 117.5 6.9 61 97-162 25-85 (304)
16 cd02962 TMX2 TMX2 family; comp 99.5 9.4E-14 2E-18 105.1 8.4 62 96-162 29-90 (152)
17 cd02956 ybbN ybbN protein fami 99.5 7.5E-14 1.6E-18 96.3 6.0 53 105-162 2-54 (96)
18 cd02989 Phd_like_TxnDC9 Phosdu 99.5 1.2E-13 2.6E-18 99.4 7.2 59 96-162 5-63 (113)
19 cd02999 PDI_a_ERp44_like PDIa 99.5 7.4E-14 1.6E-18 98.3 5.9 52 104-161 7-58 (100)
20 TIGR01130 ER_PDI_fam protein d 99.5 8E-14 1.7E-18 119.7 7.2 140 17-162 259-409 (462)
21 cd02996 PDI_a_ERp44 PDIa famil 99.5 1.8E-13 4E-18 96.7 7.2 61 97-162 3-66 (108)
22 cd02957 Phd_like Phosducin (Ph 99.5 1.8E-13 4E-18 97.9 6.8 61 96-162 5-65 (113)
23 cd03002 PDI_a_MPD1_like PDI fa 99.4 2.5E-13 5.3E-18 95.5 6.4 56 101-162 5-60 (109)
24 cd02995 PDI_a_PDI_a'_C PDIa fa 99.4 2.9E-13 6.2E-18 93.9 6.7 58 101-162 5-62 (104)
25 cd02992 PDI_a_QSOX PDIa family 99.4 3.5E-13 7.5E-18 97.0 7.1 61 97-161 3-63 (114)
26 cd02993 PDI_a_APS_reductase PD 99.4 3.5E-13 7.6E-18 95.8 6.9 59 101-162 6-64 (109)
27 cd02994 PDI_a_TMX PDIa family, 99.4 4.6E-13 1E-17 93.2 7.0 57 97-162 3-59 (101)
28 PF00085 Thioredoxin: Thioredo 99.4 2.8E-13 6.2E-18 93.5 5.4 57 100-162 3-59 (103)
29 cd03005 PDI_a_ERp46 PDIa famil 99.4 5.4E-13 1.2E-17 92.5 6.8 57 101-162 5-61 (102)
30 PTZ00051 thioredoxin; Provisio 99.4 7.3E-13 1.6E-17 91.5 7.2 58 97-162 2-59 (98)
31 cd03065 PDI_b_Calsequestrin_N 99.4 7.1E-13 1.5E-17 96.7 7.3 60 96-162 10-75 (120)
32 cd02987 Phd_like_Phd Phosducin 99.4 7.3E-13 1.6E-17 102.3 7.7 63 95-162 62-124 (175)
33 cd02952 TRP14_like Human TRX-r 99.4 6.9E-13 1.5E-17 96.6 6.6 58 100-162 6-70 (119)
34 cd02963 TRX_DnaJ TRX domain, D 99.4 4.5E-13 9.8E-18 95.7 5.4 58 101-162 9-67 (111)
35 PRK09381 trxA thioredoxin; Pro 99.4 1E-12 2.2E-17 92.8 7.0 60 96-162 4-63 (109)
36 cd02950 TxlA TRX-like protein 99.4 9.2E-13 2E-17 98.4 5.7 53 103-162 10-62 (142)
37 cd02984 TRX_PICOT TRX domain, 99.3 2.6E-12 5.5E-17 88.5 6.7 56 102-162 1-56 (97)
38 cd03001 PDI_a_P5 PDIa family, 99.3 2.7E-12 5.8E-17 89.1 6.7 56 101-162 5-60 (103)
39 cd03000 PDI_a_TMX3 PDIa family 99.3 1.7E-12 3.6E-17 91.3 5.5 55 103-162 6-60 (104)
40 cd02997 PDI_a_PDIR PDIa family 99.3 3.2E-12 7E-17 88.7 6.4 57 101-162 5-61 (104)
41 PTZ00443 Thioredoxin domain-co 99.3 2.9E-12 6.3E-17 102.6 6.6 63 96-162 31-94 (224)
42 PRK10996 thioredoxin 2; Provis 99.3 4.6E-12 9.9E-17 94.2 7.0 55 101-162 40-94 (139)
43 cd02953 DsbDgamma DsbD gamma f 99.3 3.2E-12 6.9E-17 89.6 5.7 52 104-162 2-56 (104)
44 TIGR01126 pdi_dom protein disu 99.3 6.2E-12 1.4E-16 86.7 6.2 56 102-162 2-57 (102)
45 TIGR00424 APS_reduc 5'-adenyly 99.3 8.1E-12 1.8E-16 109.2 8.1 67 92-162 348-414 (463)
46 KOG0190 Protein disulfide isom 99.3 2.3E-12 5.1E-17 112.7 4.6 64 94-162 24-87 (493)
47 cd02998 PDI_a_ERp38 PDIa famil 99.3 8.7E-12 1.9E-16 86.4 6.1 58 101-162 5-62 (105)
48 cd02988 Phd_like_VIAF Phosduci 99.3 1E-11 2.2E-16 97.3 7.1 61 96-162 83-143 (192)
49 cd02965 HyaE HyaE family; HyaE 99.3 9.1E-12 2E-16 89.6 5.8 55 101-162 15-71 (111)
50 cd02959 ERp19 Endoplasmic reti 99.3 5.1E-12 1.1E-16 91.5 4.5 55 105-160 7-61 (117)
51 PLN02309 5'-adenylylsulfate re 99.3 1.9E-11 4.2E-16 106.8 8.5 68 90-161 340-407 (457)
52 TIGR01068 thioredoxin thioredo 99.2 3.2E-11 7E-16 82.7 6.6 55 102-162 2-56 (101)
53 TIGR01295 PedC_BrcD bacterioci 99.2 2.6E-11 5.6E-16 88.5 6.1 52 101-161 11-62 (122)
54 cd02961 PDI_a_family Protein D 99.2 6.3E-11 1.4E-15 80.5 6.6 57 101-162 3-59 (101)
55 cd03008 TryX_like_RdCVF Trypar 99.2 3.9E-11 8.4E-16 90.3 5.5 47 116-162 24-75 (146)
56 cd02951 SoxW SoxW family; SoxW 99.2 4.9E-11 1.1E-15 86.3 5.4 52 104-162 4-59 (125)
57 cd02949 TRX_NTR TRX domain, no 99.1 1.2E-10 2.6E-15 80.8 6.7 51 106-162 5-55 (97)
58 TIGR01130 ER_PDI_fam protein d 99.1 8.5E-11 1.9E-15 100.9 6.9 58 101-162 6-63 (462)
59 PF13905 Thioredoxin_8: Thiore 99.1 1.1E-10 2.3E-15 80.2 5.6 45 117-162 1-45 (95)
60 cd02975 PfPDO_like_N Pyrococcu 99.1 1E-10 2.2E-15 84.0 5.7 50 105-162 14-63 (113)
61 PTZ00102 disulphide isomerase; 99.1 1.5E-10 3.3E-15 100.5 6.9 61 97-162 34-94 (477)
62 PTZ00062 glutaredoxin; Provisi 99.1 2.1E-10 4.5E-15 90.7 6.3 54 101-161 4-57 (204)
63 cd02964 TryX_like_family Trypa 99.1 2.5E-10 5.4E-15 83.5 5.6 47 116-162 16-62 (132)
64 cd03009 TryX_like_TryX_NRX Try 99.0 4.4E-10 9.5E-15 81.7 5.5 47 116-162 17-63 (131)
65 PRK00293 dipZ thiol:disulfide 99.0 7.8E-10 1.7E-14 99.3 7.0 63 96-162 453-518 (571)
66 TIGR02738 TrbB type-F conjugat 99.0 3.9E-10 8.4E-15 85.5 4.3 41 116-161 49-89 (153)
67 cd02947 TRX_family TRX family; 99.0 1.5E-09 3.2E-14 72.2 5.5 50 105-162 2-51 (93)
68 cd02967 mauD Methylamine utili 98.9 1.2E-09 2.6E-14 77.2 5.1 39 117-158 21-59 (114)
69 PF13899 Thioredoxin_7: Thiore 98.9 4.3E-10 9.3E-15 76.0 2.7 55 105-162 5-62 (82)
70 cd02982 PDI_b'_family Protein 98.9 1.5E-09 3.2E-14 75.4 5.4 44 116-162 11-54 (103)
71 cd02955 SSP411 TRX domain, SSP 98.9 2.5E-09 5.4E-14 78.4 6.2 53 103-162 5-60 (124)
72 cd03007 PDI_a_ERp29_N PDIa fam 98.9 1.9E-09 4.1E-14 78.2 5.1 53 101-161 6-60 (116)
73 KOG4277 Uncharacterized conser 98.9 8.6E-10 1.9E-14 91.4 3.5 47 116-162 42-88 (468)
74 TIGR00412 redox_disulf_2 small 98.9 2.8E-09 6.1E-14 71.3 4.1 36 121-159 2-37 (76)
75 PTZ00056 glutathione peroxidas 98.9 3.9E-09 8.4E-14 83.0 5.3 44 116-161 38-81 (199)
76 PRK15412 thiol:disulfide inter 98.8 3.4E-09 7.4E-14 82.1 4.7 41 116-162 67-107 (185)
77 TIGR00411 redox_disulf_1 small 98.8 5.5E-09 1.2E-13 69.6 5.0 40 120-162 2-41 (82)
78 cd03012 TlpA_like_DipZ_like Tl 98.8 6.4E-09 1.4E-13 75.3 5.7 43 116-160 22-64 (126)
79 cd00340 GSH_Peroxidase Glutath 98.8 8.2E-09 1.8E-13 77.3 5.7 43 116-161 21-63 (152)
80 cd03010 TlpA_like_DsbE TlpA-li 98.8 6.9E-09 1.5E-13 74.9 4.9 41 116-161 24-64 (127)
81 PRK14018 trifunctional thiored 98.8 7.3E-09 1.6E-13 91.9 5.6 43 116-160 55-97 (521)
82 TIGR02740 TraF-like TraF-like 98.8 1.3E-08 2.8E-13 83.7 6.7 41 116-161 165-205 (271)
83 KOG0191 Thioredoxin/protein di 98.8 9E-09 1.9E-13 88.0 5.9 133 17-161 71-205 (383)
84 TIGR02540 gpx7 putative glutat 98.8 1.4E-08 2.9E-13 76.1 5.7 43 116-160 21-63 (153)
85 KOG1731 FAD-dependent sulfhydr 98.8 2.1E-09 4.5E-14 95.0 1.0 65 94-162 38-102 (606)
86 PLN02399 phospholipid hydroper 98.7 1.7E-08 3.7E-13 81.5 5.5 44 116-161 98-141 (236)
87 PF08534 Redoxin: Redoxin; In 98.7 1.4E-08 2.9E-13 74.9 4.5 44 116-161 27-71 (146)
88 cd02973 TRX_GRX_like Thioredox 98.7 2.5E-08 5.4E-13 64.4 4.8 38 121-162 3-40 (67)
89 cd02960 AGR Anterior Gradient 98.7 1.4E-08 3.1E-13 75.0 3.9 58 101-161 7-67 (130)
90 PHA02125 thioredoxin-like prot 98.7 1.4E-08 3E-13 67.6 3.3 33 121-162 2-34 (75)
91 PLN02412 probable glutathione 98.7 2.8E-08 6E-13 75.9 5.1 44 116-161 28-71 (167)
92 TIGR00385 dsbE periplasmic pro 98.7 2.6E-08 5.5E-13 76.3 4.7 40 116-161 62-101 (173)
93 cd02966 TlpA_like_family TlpA- 98.7 4.8E-08 1E-12 67.2 5.5 45 116-162 18-62 (116)
94 PLN02919 haloacid dehalogenase 98.7 2.9E-08 6.3E-13 94.7 5.8 42 116-159 419-460 (1057)
95 PRK13728 conjugal transfer pro 98.7 2.5E-08 5.3E-13 77.6 4.2 36 121-161 73-108 (181)
96 KOG0912 Thiol-disulfide isomer 98.6 2.5E-08 5.4E-13 82.7 3.9 57 102-162 2-60 (375)
97 COG0526 TrxA Thiol-disulfide i 98.6 6.4E-08 1.4E-12 65.6 4.8 42 117-161 32-73 (127)
98 KOG0191 Thioredoxin/protein di 98.6 4.3E-08 9.3E-13 83.8 4.7 54 103-162 36-89 (383)
99 PRK03147 thiol-disulfide oxido 98.6 8.5E-08 1.9E-12 72.4 5.5 44 116-161 60-103 (173)
100 TIGR02661 MauD methylamine deh 98.5 8.8E-08 1.9E-12 74.5 4.5 39 116-157 73-111 (189)
101 TIGR02187 GlrX_arch Glutaredox 98.5 2.4E-07 5.2E-12 73.4 7.0 43 116-162 132-174 (215)
102 PTZ00256 glutathione peroxidas 98.5 1.2E-07 2.7E-12 73.3 5.1 44 116-161 39-83 (183)
103 TIGR01626 ytfJ_HI0045 conserve 98.5 1.1E-07 2.4E-12 74.1 4.1 30 116-145 58-87 (184)
104 PF13098 Thioredoxin_2: Thiore 98.5 8.7E-08 1.9E-12 67.4 2.2 45 115-162 3-50 (112)
105 KOG2501 Thioredoxin, nucleored 98.4 2.5E-07 5.5E-12 70.1 4.3 46 116-161 32-77 (157)
106 PRK10606 btuE putative glutath 98.4 4.2E-07 9E-12 70.8 5.5 43 116-161 24-66 (183)
107 cd02969 PRX_like1 Peroxiredoxi 98.4 5.1E-07 1.1E-11 68.6 5.5 44 116-161 24-67 (171)
108 cd02968 SCO SCO (an acronym fo 98.4 5.4E-07 1.2E-11 65.8 5.2 46 116-161 21-68 (142)
109 cd03011 TlpA_like_ScsD_MtbDsbE 98.4 3.5E-07 7.6E-12 65.3 4.1 31 116-146 19-49 (123)
110 cd03014 PRX_Atyp2cys Peroxired 98.4 6.2E-07 1.3E-11 65.9 5.3 43 116-162 25-68 (143)
111 TIGR02187 GlrX_arch Glutaredox 98.4 6E-07 1.3E-11 71.0 5.5 45 116-162 18-65 (215)
112 PF00578 AhpC-TSA: AhpC/TSA fa 98.3 1.2E-06 2.6E-11 62.2 5.2 45 116-162 24-69 (124)
113 PRK00522 tpx lipid hydroperoxi 98.3 1.5E-06 3.4E-11 66.2 5.4 43 116-162 43-86 (167)
114 cd02970 PRX_like2 Peroxiredoxi 98.3 1.5E-06 3.3E-11 63.6 5.0 44 117-162 24-67 (149)
115 cd02958 UAS UAS family; UAS is 98.2 2.6E-06 5.7E-11 60.7 5.2 55 104-161 4-61 (114)
116 cd03018 PRX_AhpE_like Peroxire 98.2 2.2E-06 4.7E-11 63.1 4.6 42 118-161 29-71 (149)
117 cd03015 PRX_Typ2cys Peroxiredo 98.2 2.6E-06 5.5E-11 65.0 4.7 44 116-161 28-72 (173)
118 cd03026 AhpF_NTD_C TRX-GRX-lik 98.2 6.2E-06 1.3E-10 56.9 6.1 43 116-162 11-53 (89)
119 TIGR03137 AhpC peroxiredoxin. 98.1 3.2E-06 6.9E-11 65.6 4.7 44 116-161 30-74 (187)
120 KOG0914 Thioredoxin-like prote 98.1 4E-06 8.7E-11 66.8 4.7 70 89-162 118-187 (265)
121 cd02971 PRX_family Peroxiredox 98.1 5.7E-06 1.2E-10 60.1 4.8 44 116-161 21-65 (140)
122 cd03017 PRX_BCP Peroxiredoxin 98.0 6.7E-06 1.4E-10 59.8 4.4 44 116-161 22-66 (140)
123 cd01659 TRX_superfamily Thiore 97.9 1.4E-05 3E-10 48.1 3.9 38 121-162 1-38 (69)
124 COG4232 Thiol:disulfide interc 97.9 1.1E-05 2.4E-10 72.0 4.6 58 99-162 458-518 (569)
125 PRK09437 bcp thioredoxin-depen 97.9 1.3E-05 2.8E-10 59.7 4.2 44 116-161 29-73 (154)
126 PRK10382 alkyl hydroperoxide r 97.8 3.1E-05 6.8E-10 60.4 5.0 45 116-162 30-75 (187)
127 smart00594 UAS UAS domain. 97.8 3.1E-05 6.7E-10 56.1 4.4 56 104-162 14-72 (122)
128 TIGR02180 GRX_euk Glutaredoxin 97.7 2.2E-05 4.9E-10 52.1 2.6 36 121-161 1-36 (84)
129 PF06110 DUF953: Eukaryotic pr 97.7 0.00012 2.5E-09 53.4 6.6 58 101-161 3-67 (119)
130 PRK15000 peroxidase; Provision 97.7 5.4E-05 1.2E-09 59.6 5.0 45 116-162 33-78 (200)
131 KOG3425 Uncharacterized conser 97.7 0.00015 3.2E-09 52.8 6.4 57 102-162 11-75 (128)
132 PRK13190 putative peroxiredoxi 97.7 6.1E-05 1.3E-09 59.2 4.5 45 116-162 26-71 (202)
133 TIGR02196 GlrX_YruB Glutaredox 97.7 5.3E-05 1.1E-09 48.4 3.4 33 121-162 2-34 (74)
134 PF03190 Thioredox_DsbH: Prote 97.6 4.6E-05 1E-09 58.3 3.1 53 103-162 27-82 (163)
135 PRK13599 putative peroxiredoxi 97.5 0.00012 2.5E-09 58.4 4.3 45 116-162 27-72 (215)
136 TIGR02200 GlrX_actino Glutared 97.5 4.1E-05 8.9E-10 49.9 1.1 25 121-145 2-26 (77)
137 PRK11200 grxA glutaredoxin 1; 97.5 0.00011 2.3E-09 49.7 3.2 38 121-162 3-40 (85)
138 PTZ00137 2-Cys peroxiredoxin; 97.5 0.00018 3.9E-09 59.0 5.0 45 116-162 97-142 (261)
139 PRK13191 putative peroxiredoxi 97.5 0.00014 3E-09 58.0 4.1 45 116-162 32-77 (215)
140 cd03016 PRX_1cys Peroxiredoxin 97.5 0.00015 3.3E-09 57.0 4.2 42 119-162 28-69 (203)
141 KOG0911 Glutaredoxin-related p 97.4 6.3E-05 1.4E-09 60.1 1.4 56 97-162 3-58 (227)
142 PRK13189 peroxiredoxin; Provis 97.3 0.00029 6.3E-09 56.3 4.4 45 116-162 34-79 (222)
143 PTZ00253 tryparedoxin peroxida 97.3 0.00043 9.4E-09 54.1 4.9 45 116-162 35-80 (199)
144 PF02114 Phosducin: Phosducin; 97.2 0.00072 1.6E-08 55.6 5.7 62 96-162 126-187 (265)
145 KOG0913 Thiol-disulfide isomer 97.1 0.0001 2.2E-09 59.3 -0.1 55 99-161 27-81 (248)
146 PF02966 DIM1: Mitosis protein 97.1 0.0032 6.9E-08 46.5 7.7 61 98-163 3-63 (133)
147 PF13728 TraF: F plasmid trans 97.1 0.0011 2.3E-08 52.9 5.6 47 108-161 113-159 (215)
148 PF14595 Thioredoxin_9: Thiore 96.9 0.0022 4.9E-08 47.1 5.2 33 116-148 40-72 (129)
149 KOG3414 Component of the U4/U6 96.8 0.0038 8.2E-08 45.9 5.8 61 98-163 6-66 (142)
150 TIGR02183 GRXA Glutaredoxin, G 96.8 0.0012 2.6E-08 44.8 3.0 37 121-161 2-38 (86)
151 cd03419 GRX_GRXh_1_2_like Glut 96.8 0.0011 2.4E-08 43.7 2.7 26 121-146 2-27 (82)
152 cd02976 NrdH NrdH-redoxin (Nrd 96.8 0.0014 3.1E-08 41.6 3.2 21 121-141 2-22 (73)
153 cd03019 DsbA_DsbA DsbA family, 96.6 0.0036 7.8E-08 47.0 4.6 40 116-158 14-53 (178)
154 PRK13703 conjugal pilus assemb 96.5 0.0046 9.9E-08 50.4 5.1 38 108-147 136-173 (248)
155 TIGR02739 TraF type-F conjugat 96.5 0.0051 1.1E-07 50.4 5.4 47 108-161 143-189 (256)
156 cd03072 PDI_b'_ERp44 PDIb' fam 96.5 0.0005 1.1E-08 49.2 -0.5 45 16-62 37-84 (111)
157 KOG1672 ATP binding protein [P 96.4 0.015 3.2E-07 45.8 7.0 59 96-162 67-125 (211)
158 PF13462 Thioredoxin_4: Thiore 96.3 0.0098 2.1E-07 43.8 5.6 44 116-160 11-54 (162)
159 cd02066 GRX_family Glutaredoxi 96.3 0.0037 8E-08 39.3 2.5 23 121-143 2-24 (72)
160 cd03073 PDI_b'_ERp72_ERp57 PDI 96.0 0.0017 3.6E-08 46.6 -0.2 43 16-60 41-86 (111)
161 cd02991 UAS_ETEA UAS family, E 96.0 0.0088 1.9E-07 43.1 3.6 54 105-162 5-62 (116)
162 cd02972 DsbA_family DsbA famil 96.0 0.012 2.6E-07 38.9 4.0 36 121-159 1-36 (98)
163 PHA03050 glutaredoxin; Provisi 95.9 0.0064 1.4E-07 43.3 2.4 24 121-144 15-38 (108)
164 COG1331 Highly conserved prote 95.5 0.014 3.1E-07 53.4 3.7 53 103-162 33-88 (667)
165 PRK10954 periplasmic protein d 95.5 0.017 3.7E-07 45.3 3.7 41 117-160 37-80 (207)
166 PF00462 Glutaredoxin: Glutare 95.4 0.016 3.6E-07 36.1 2.8 33 121-162 1-33 (60)
167 PF11009 DUF2847: Protein of u 95.4 0.067 1.5E-06 38.1 6.2 58 99-161 3-60 (105)
168 cd02983 P5_C P5 family, C-term 95.2 0.0068 1.5E-07 44.5 0.7 63 16-80 47-113 (130)
169 TIGR02190 GlrX-dom Glutaredoxi 94.8 0.026 5.6E-07 37.5 2.6 25 118-142 7-31 (79)
170 TIGR00365 monothiol glutaredox 94.7 0.051 1.1E-06 37.8 3.8 27 117-143 11-41 (97)
171 PRK10329 glutaredoxin-like pro 94.4 0.049 1.1E-06 36.6 3.2 33 121-162 3-35 (81)
172 cd03418 GRX_GRXb_1_3_like Glut 94.3 0.058 1.3E-06 34.8 3.2 21 121-141 2-22 (75)
173 cd03020 DsbA_DsbC_DsbG DsbA fa 94.1 0.1 2.2E-06 40.4 4.8 26 116-141 76-101 (197)
174 cd03027 GRX_DEP Glutaredoxin ( 94.0 0.069 1.5E-06 34.6 3.2 21 121-141 3-23 (73)
175 TIGR02189 GlrX-like_plant Glut 93.7 0.03 6.5E-07 39.1 1.0 23 121-143 10-32 (99)
176 KOG3170 Conserved phosducin-li 93.3 0.25 5.3E-06 39.4 5.6 58 97-160 93-150 (240)
177 cd02981 PDI_b_family Protein D 93.1 0.45 9.7E-06 32.0 6.3 52 98-159 2-53 (97)
178 TIGR02181 GRX_bact Glutaredoxi 93.0 0.036 7.7E-07 36.4 0.5 21 122-142 2-22 (79)
179 cd03013 PRX5_like Peroxiredoxi 93.0 0.2 4.4E-06 37.5 4.7 44 116-161 29-74 (155)
180 TIGR02194 GlrX_NrdH Glutaredox 92.7 0.12 2.6E-06 33.5 2.7 20 122-141 2-21 (72)
181 cd03029 GRX_hybridPRX5 Glutare 92.5 0.15 3.3E-06 32.8 3.0 21 121-141 3-23 (72)
182 KOG1752 Glutaredoxin and relat 92.3 0.28 6E-06 34.8 4.4 44 105-161 6-49 (104)
183 PF13192 Thioredoxin_3: Thiore 92.1 0.38 8.3E-06 31.5 4.6 26 122-147 3-28 (76)
184 cd03028 GRX_PICOT_like Glutare 90.9 0.13 2.9E-06 34.9 1.5 27 117-143 7-37 (90)
185 PRK10877 protein disulfide iso 90.4 0.27 5.9E-06 39.5 3.1 29 116-144 106-134 (232)
186 PF00837 T4_deiodinase: Iodoth 90.2 0.23 4.9E-06 40.3 2.5 62 92-160 79-142 (237)
187 PF13848 Thioredoxin_6: Thiore 89.9 0.7 1.5E-05 34.5 4.8 56 100-162 81-137 (184)
188 PRK10824 glutaredoxin-4; Provi 89.2 0.26 5.6E-06 35.6 1.9 28 117-144 14-45 (115)
189 PRK11657 dsbG disulfide isomer 88.9 0.89 1.9E-05 36.9 5.0 30 116-145 116-145 (251)
190 COG1225 Bcp Peroxiredoxin [Pos 88.7 0.75 1.6E-05 35.1 4.2 45 116-162 29-74 (157)
191 PTZ00062 glutaredoxin; Provisi 88.7 0.69 1.5E-05 36.6 4.1 26 117-142 112-141 (204)
192 PRK10638 glutaredoxin 3; Provi 88.0 0.25 5.5E-06 32.8 1.1 22 121-142 4-25 (83)
193 TIGR03143 AhpF_homolog putativ 87.8 1.9 4.1E-05 38.8 6.9 42 117-162 475-517 (555)
194 COG0695 GrxC Glutaredoxin and 87.8 0.55 1.2E-05 31.4 2.6 22 121-142 3-24 (80)
195 PRK15317 alkyl hydroperoxide r 87.6 2 4.3E-05 38.2 6.8 43 116-162 115-157 (517)
196 cd02982 PDI_b'_family Protein 86.2 0.18 3.9E-06 34.2 -0.4 40 16-57 35-74 (103)
197 PF02630 SCO1-SenC: SCO1/SenC; 85.4 1.7 3.7E-05 33.1 4.6 46 116-161 51-97 (174)
198 PRK11509 hydrogenase-1 operon 84.8 4.1 8.8E-05 30.1 6.1 54 103-162 24-79 (132)
199 KOG3171 Conserved phosducin-li 84.3 2.6 5.6E-05 34.0 5.2 60 96-160 139-198 (273)
200 cd03072 PDI_b'_ERp44 PDIb' fam 80.5 4.3 9.4E-05 28.7 4.8 53 101-162 4-59 (111)
201 cd03074 PDI_b'_Calsequestrin_C 75.4 14 0.0003 26.7 6.0 58 103-163 8-65 (120)
202 cd02977 ArsC_family Arsenate R 74.9 1.2 2.6E-05 30.9 0.5 25 122-146 2-26 (105)
203 COG1651 DsbG Protein-disulfide 74.8 4.4 9.6E-05 32.0 3.8 33 116-148 83-115 (244)
204 cd03035 ArsC_Yffb Arsenate Red 74.6 1.9 4.1E-05 30.3 1.5 24 122-145 2-25 (105)
205 TIGR03140 AhpF alkyl hydropero 73.7 12 0.00026 33.3 6.6 43 116-162 116-158 (515)
206 PF05768 DUF836: Glutaredoxin- 73.1 2.8 6.2E-05 27.7 2.0 37 121-162 2-38 (81)
207 cd03073 PDI_b'_ERp72_ERp57 PDI 72.9 6.8 0.00015 27.7 4.1 53 102-162 5-61 (111)
208 PF04592 SelP_N: Selenoprotein 72.3 5 0.00011 32.6 3.5 45 116-160 25-70 (238)
209 PHA03075 glutaredoxin-like pro 72.0 2.7 5.9E-05 30.5 1.8 30 118-147 2-31 (123)
210 cd03067 PDI_b_PDIR_N PDIb fami 70.3 19 0.00042 25.7 5.7 56 99-162 5-60 (112)
211 PF00255 GSHPx: Glutathione pe 67.4 18 0.00038 25.7 5.2 44 116-162 20-63 (108)
212 KOG2603 Oligosaccharyltransfer 67.0 15 0.00032 31.2 5.3 67 94-162 39-114 (331)
213 PF13848 Thioredoxin_6: Thiore 65.8 2.4 5.2E-05 31.5 0.4 42 16-59 118-159 (184)
214 COG2143 Thioredoxin-related pr 64.4 20 0.00043 27.7 5.2 44 115-161 40-86 (182)
215 PF06053 DUF929: Domain of unk 63.9 10 0.00023 31.0 3.8 33 116-148 57-89 (249)
216 cd03060 GST_N_Omega_like GST_N 62.0 3.8 8.3E-05 25.9 0.8 22 123-144 3-24 (71)
217 cd03036 ArsC_like Arsenate Red 61.8 5 0.00011 28.2 1.5 25 122-146 2-26 (111)
218 PRK01655 spxA transcriptional 60.5 4.4 9.5E-05 29.6 1.0 26 121-146 2-27 (131)
219 cd03068 PDI_b_ERp72 PDIb famil 57.0 53 0.0012 22.8 6.1 53 97-159 2-55 (107)
220 PF01216 Calsequestrin: Calseq 55.2 35 0.00076 29.5 5.6 60 96-161 35-99 (383)
221 TIGR01617 arsC_related transcr 55.0 7.5 0.00016 27.5 1.4 24 123-146 3-26 (117)
222 COG1999 Uncharacterized protei 53.8 43 0.00093 26.3 5.7 46 116-161 66-115 (207)
223 PRK12559 transcriptional regul 53.6 10 0.00022 27.7 2.0 26 121-146 2-27 (131)
224 KOG2640 Thioredoxin [Function 53.4 4.3 9.3E-05 34.3 -0.0 32 116-147 75-106 (319)
225 cd00570 GST_N_family Glutathio 53.1 5.6 0.00012 23.7 0.5 24 123-146 3-26 (71)
226 cd03051 GST_N_GTT2_like GST_N 50.7 7.2 0.00016 24.2 0.7 24 123-146 3-26 (74)
227 cd03069 PDI_b_ERp57 PDIb famil 50.1 50 0.0011 22.6 5.0 51 98-158 3-53 (104)
228 cd02983 P5_C P5 family, C-term 49.0 92 0.002 22.5 6.4 60 96-162 3-67 (130)
229 COG0386 BtuE Glutathione perox 48.2 41 0.00089 25.7 4.5 43 116-161 24-66 (162)
230 cd03032 ArsC_Spx Arsenate Redu 47.7 9.3 0.0002 27.0 0.9 25 122-146 3-27 (115)
231 COG3019 Predicted metal-bindin 44.8 18 0.00039 27.2 2.1 22 119-140 26-47 (149)
232 TIGR03143 AhpF_homolog putativ 44.7 76 0.0016 28.6 6.5 51 104-160 355-405 (555)
233 KOG2244 Highly conserved prote 43.1 14 0.0003 33.9 1.5 53 103-162 102-157 (786)
234 cd03040 GST_N_mPGES2 GST_N fam 42.9 12 0.00027 23.7 0.9 24 122-145 3-26 (77)
235 PRK13344 spxA transcriptional 39.6 22 0.00048 25.9 1.9 26 121-146 2-27 (132)
236 cd03059 GST_N_SspA GST_N famil 38.8 14 0.0003 23.0 0.6 24 123-146 3-26 (73)
237 cd03037 GST_N_GRX2 GST_N famil 37.7 13 0.00028 23.3 0.3 23 123-145 3-25 (71)
238 COG4545 Glutaredoxin-related p 36.0 18 0.00039 24.4 0.8 25 122-146 5-29 (85)
239 PLN02182 cytidine deaminase 35.9 14 0.00031 31.6 0.4 15 124-139 128-142 (339)
240 PF07912 ERp29_N: ERp29, N-ter 35.6 1.8E+02 0.0039 21.4 6.1 55 101-162 9-64 (126)
241 KOG1651 Glutathione peroxidase 33.7 96 0.0021 24.0 4.6 44 116-161 33-76 (171)
242 cd03045 GST_N_Delta_Epsilon GS 33.6 20 0.00044 22.3 0.8 24 123-146 3-26 (74)
243 cd03041 GST_N_2GST_N GST_N fam 31.9 20 0.00043 23.0 0.6 23 122-144 3-25 (77)
244 COG0295 Cdd Cytidine deaminase 31.7 36 0.00077 25.3 1.9 11 125-136 85-95 (134)
245 PF11539 DUF3228: Protein of u 26.7 54 0.0012 25.9 2.2 31 101-131 25-55 (197)
246 cd03033 ArsC_15kD Arsenate Red 25.4 57 0.0012 23.1 2.0 26 122-147 3-28 (113)
247 KOG0833 Cytidine deaminase [Nu 24.2 45 0.00098 25.8 1.4 17 124-141 101-117 (173)
248 COG0450 AhpC Peroxiredoxin [Po 22.2 1.4E+02 0.0031 23.6 3.8 44 116-161 32-76 (194)
249 KOG4163 Prolyl-tRNA synthetase 21.2 89 0.0019 28.0 2.7 28 97-132 467-494 (551)
250 cd00862 ProRS_anticodon_zinc P 20.5 1.2E+02 0.0027 23.5 3.2 27 97-131 128-154 (202)
251 cd03066 PDI_b_Calsequestrin_mi 20.4 2.8E+02 0.0061 18.6 6.0 52 97-157 2-53 (102)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.2e-22 Score=174.14 Aligned_cols=139 Identities=17% Similarity=0.256 Sum_probs=110.2
Q ss_pred CcCCcccCCcccEEEecccccccchhhhcccccCCCCCCcccccccc-----cccCcccccccchhhhhh-ccC------
Q 031258 16 RNADGKFSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTGLAS-----LKSNHNLRHGKVKGLIDA-TQG------ 83 (163)
Q Consensus 16 ~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~-----~~~~~~~~~~~~~~~~~~-~~~------ 83 (163)
+++|++|||++.||++|..... ++..+| |+....+| +++..++. ......+....+..++.. ..|
T Consensus 278 ~~vAk~f~~~l~Fi~~d~e~~~-~~~~~~-Gl~~~~~~-~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~ 354 (493)
T KOG0190|consen 278 EEVAKKFKGKLRFILIDPESFA-RVLEFF-GLEEEQLP-IRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHL 354 (493)
T ss_pred HHHHHhcccceEEEEEChHHhh-HHHHhc-CcccccCC-eeEEeeccccccccCccccccHHHHHHHHHHHhcCcccccc
Confidence 4689999999999999666554 477777 88777777 55444332 133344555567777777 555
Q ss_pred CCCCCCCCCCccceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 84 ESDEDDDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 84 ~s~~~~~~~~~~~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.|++.++.+..++|+.++ ++||++++.+ .+|.|+|+|||||||||+++.|+|++|+++|++ ..+++|+++|+..
T Consensus 355 kSqpiPe~~~~~pVkvvV-gknfd~iv~d---e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~-~~~vviAKmDaTa 428 (493)
T KOG0190|consen 355 KSQPIPEDNDRSPVKVVV-GKNFDDIVLD---EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKD-DENVVIAKMDATA 428 (493)
T ss_pred ccCCCCcccccCCeEEEe-ecCHHHHhhc---cccceEEEEcCcccchhhhhhhHHHHHHHHhcC-CCCcEEEEecccc
Confidence 367777788778888876 7899999985 899999999999999999999999999999998 6799999999864
No 2
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.7e-16 Score=112.40 Aligned_cols=56 Identities=41% Similarity=0.664 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 103 ~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.++++.....+...++++||+|||+|||||+.|.|.+.+|+.+|.+ +.|++||+|+
T Consensus 7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde 62 (106)
T KOG0907|consen 7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE 62 (106)
T ss_pred hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc
Confidence 3455544444444679999999999999999999999999999975 9999999996
No 3
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.65 E-value=3.7e-16 Score=113.00 Aligned_cols=56 Identities=11% Similarity=0.184 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcccC
Q 031258 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163 (163)
Q Consensus 103 ~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde~ 163 (163)
.++|++.+... .+++|||+|||+|||||+.|.|.+++++++|++ .+.|++||+|+.
T Consensus 2 ~~~~~~~i~~~--~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~---~v~f~kVDvD~~ 57 (114)
T cd02954 2 GWAVDQAILSE--EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN---FAVIYLVDIDEV 57 (114)
T ss_pred HHHHHHHHhcc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHccC---ceEEEEEECCCC
Confidence 57888888743 688999999999999999999999999999976 689999999974
No 4
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.3e-16 Score=117.39 Aligned_cols=60 Identities=22% Similarity=0.357 Sum_probs=54.4
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 97 v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
...+.+..+|++.+.+ .+.||+|+|||+|||||+.|.|.++++..+|.+ .+.|++||+|+
T Consensus 44 ~~~~~s~~~~~~~Vi~---S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g---~~k~~kvdtD~ 103 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVIN---SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG---KFKLYKVDTDE 103 (150)
T ss_pred cccccCHHHHHHHHHc---cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC---eEEEEEEcccc
Confidence 4455778999988875 789999999999999999999999999999987 89999999986
No 5
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.63 E-value=6.7e-16 Score=115.55 Aligned_cols=62 Identities=8% Similarity=0.163 Sum_probs=55.3
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcccC
Q 031258 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163 (163)
Q Consensus 97 v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde~ 163 (163)
+..+.+.++|++.+..+ .+++|||+|||+|||||+.|.|.++++++++++ .+.|++||+|++
T Consensus 5 l~~l~s~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~---~~~~~kVDVDe~ 66 (142)
T PLN00410 5 LPHLHSGWAVDQAILAE--EERLVVIRFGHDWDETCMQMDEVLASVAETIKN---FAVIYLVDITEV 66 (142)
T ss_pred HhhhCCHHHHHHHHHhc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC---ceEEEEEECCCC
Confidence 34567889999999754 789999999999999999999999999999976 688999999974
No 6
>PTZ00102 disulphide isomerase; Provisional
Probab=99.61 E-value=1.6e-15 Score=131.56 Aligned_cols=137 Identities=18% Similarity=0.149 Sum_probs=94.7
Q ss_pred cCCcccCCcccEEEecccccccchhhhcccccCCCCCCccccccc--c-cccC--cccccccchhhhhh-ccCC------
Q 031258 17 NADGKFSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTGLA--S-LKSN--HNLRHGKVKGLIDA-TQGE------ 84 (163)
Q Consensus 17 ~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~--~-~~~~--~~~~~~~~~~~~~~-~~~~------ 84 (163)
.+|++||+++.|+.+|.+..+.|....+ |+.. .|.+.+.+.+ + ++.. .......+..+... ..|.
T Consensus 271 ~~A~~~~~~~~f~~vd~~~~~~~~~~~~-gi~~--~P~~~i~~~~~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~ 347 (477)
T PTZ00102 271 KVARKLREKYAFVWLDTEQFGSHAKEHL-LIEE--FPGLAYQSPAGRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIK 347 (477)
T ss_pred HHHHhccCceEEEEEechhcchhHHHhc-Cccc--CceEEEEcCCcccCCCccccccCCHHHHHHHHHHHhCCCCCcccc
Confidence 5899999999999999997766566555 5543 5655544322 1 1111 11334556666665 3331
Q ss_pred CCCCCCCCCccceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 85 SDEDDDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 85 s~~~~~~~~~~~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
|++. +......+..+ +.++|++++.+ .+++|+|+||||||++|+.+.|.|+++++.+++ ...+.++++|++.
T Consensus 348 se~~-p~~~~~~v~~l-~~~~f~~~v~~---~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~v~~~~id~~~ 419 (477)
T PTZ00102 348 SEPI-PEEQDGPVKVV-VGNTFEEIVFK---SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD-NDSIIVAKMNGTA 419 (477)
T ss_pred cCCC-CCCCCCCeEEe-cccchHHHHhc---CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCcEEEEEEECCC
Confidence 2222 22223445554 47899998764 789999999999999999999999999999976 4579999999874
No 7
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.60 E-value=2.1e-15 Score=106.43 Aligned_cols=55 Identities=29% Similarity=0.370 Sum_probs=49.7
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 102 t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+.++|++++..+ .+++|||+|||+||++|+.+.|.+++++++|. .+.|++||+|+
T Consensus 2 ~~~~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~----~v~~~~vd~d~ 56 (103)
T cd02985 2 SVEELDEALKKA--KGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN----DVVFLLVNGDE 56 (103)
T ss_pred CHHHHHHHHHHc--CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC----CCEEEEEECCC
Confidence 578999999764 69999999999999999999999999999994 48999999985
No 8
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.60 E-value=2.6e-15 Score=108.32 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcccC
Q 031258 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163 (163)
Q Consensus 103 ~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde~ 163 (163)
.++|++.+..+ .+++|||+|||+|||||+.|.|.+++++++|++ .+.|++||+|++
T Consensus 2 ~~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~---~~~f~kVDVDev 57 (114)
T cd02986 2 KKEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK---MASIYLVDVDKV 57 (114)
T ss_pred HHHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC---ceEEEEEecccc
Confidence 46888888865 799999999999999999999999999999974 499999999985
No 9
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.58 E-value=3.7e-15 Score=107.58 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=52.6
Q ss_pred cceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 95 ~~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
..+.+ ++.++|++++.-. ..+++++|+||||||++|+.|.|.|+++++++++ .+.|++||+|+
T Consensus 9 ~~v~~-l~~~~f~~~~~v~-~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~---~v~~~~Vd~d~ 71 (113)
T cd03006 9 SPVLD-FYKGQLDYAEELR-TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD---QVLFVAINCWW 71 (113)
T ss_pred CCeEE-echhhhHHHHhcc-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEECCC
Confidence 34555 5678999873211 2899999999999999999999999999999976 69999999985
No 10
>PHA02278 thioredoxin-like protein
Probab=99.58 E-value=3.1e-15 Score=106.29 Aligned_cols=54 Identities=13% Similarity=0.243 Sum_probs=47.4
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 102 t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+.++|.+.+. .+++|||+|||+|||||+.|.|.++++++++.. ++.|++||+|+
T Consensus 3 ~~~~~~~~i~----~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdvd~ 56 (103)
T PHA02278 3 SLVDLNTAIR----QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNLDA 56 (103)
T ss_pred CHHHHHHHHh----CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEECCc
Confidence 4678999986 899999999999999999999999999988654 46789999884
No 11
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.56 E-value=9.5e-15 Score=102.05 Aligned_cols=55 Identities=16% Similarity=0.375 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
++.++|++.+. .+++++|.|||+||++|++|.|.|+++++++++ .+.|++||+++
T Consensus 6 l~~~~f~~~v~----~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~---~~~~~~vd~~~ 60 (101)
T cd03003 6 LDRGDFDAAVN----SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG---VIRIGAVNCGD 60 (101)
T ss_pred cCHhhHHHHhc----CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC---ceEEEEEeCCc
Confidence 46889999986 679999999999999999999999999999976 69999999985
No 12
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.55 E-value=1.2e-14 Score=102.22 Aligned_cols=57 Identities=30% Similarity=0.531 Sum_probs=51.0
Q ss_pred ecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 99 ~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+.+.++|++++. .+++|+|+|||+||++|+.+.|.++++++.|++ ..+.|+++|+|
T Consensus 3 ~i~~~~~~~~~i~----~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~--~~~~~~~vd~d 59 (102)
T cd02948 3 EINNQEEWEELLS----NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD--DLLHFATAEAD 59 (102)
T ss_pred EccCHHHHHHHHc----cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC--CcEEEEEEeCC
Confidence 4578999999886 789999999999999999999999999999974 25889999987
No 13
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.7e-15 Score=118.20 Aligned_cols=62 Identities=37% Similarity=0.562 Sum_probs=57.1
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcccC
Q 031258 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163 (163)
Q Consensus 96 ~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde~ 163 (163)
+|+++.+..+|+..+..+ ..+.|+|+|+|.|||||++++|+|..|+.+|++ .+|++||+|+.
T Consensus 2 ~Vi~v~~d~df~~~ls~a--g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~c 63 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAA--GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDEC 63 (288)
T ss_pred CeEEecCcHHHHHhhhcc--CceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHHh
Confidence 477888999999999876 889999999999999999999999999999975 89999999973
No 14
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.52 E-value=3.3e-14 Score=99.59 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+.++|++.+.+ .+++++|+|||+||++|+.+.|.|+++++++++ .+.|++||+++
T Consensus 6 l~~~~f~~~i~~---~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~ 61 (104)
T cd03004 6 LTPEDFPELVLN---RKEPWLVDFYAPWCGPCQALLPELRKAARALKG---KVKVGSVDCQK 61 (104)
T ss_pred cCHHHHHHHHhc---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEECCc
Confidence 468899998874 577999999999999999999999999999965 69999999985
No 15
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.5e-14 Score=117.55 Aligned_cols=61 Identities=26% Similarity=0.435 Sum_probs=53.8
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 97 v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+++ .|..||++.|..+ ...+||+|+||||||++|+++.|.+++++.+|++ ++.+++||+|+
T Consensus 25 I~d-vT~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G---~f~LakvN~D~ 85 (304)
T COG3118 25 IKD-VTEANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG---KFKLAKVNCDA 85 (304)
T ss_pred cee-chHhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC---ceEEEEecCCc
Confidence 555 5678999777665 2677999999999999999999999999999998 89999999985
No 16
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.50 E-value=9.4e-14 Score=105.15 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=52.7
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 96 ~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+.+ .+.++|++.+... .+++++|+||||||++|+++.|.++++++++.+ .++.|++||+|+
T Consensus 29 ~v~~-l~~~~f~~~l~~~--~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~--~~v~f~~VDvd~ 90 (152)
T cd02962 29 HIKY-FTPKTLEEELERD--KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN--NNLKFGKIDIGR 90 (152)
T ss_pred ccEE-cCHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc--CCeEEEEEECCC
Confidence 4444 5578999988643 578999999999999999999999999999964 359999999986
No 17
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.48 E-value=7.5e-14 Score=96.30 Aligned_cols=53 Identities=25% Similarity=0.343 Sum_probs=47.1
Q ss_pred HHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 105 ~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+|++.+..+ .++++||+|||+||++|+.+.|.++++++.+.+ .+.|++||+++
T Consensus 2 ~f~~~i~~~--~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~ 54 (96)
T cd02956 2 NFQQVLQES--TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG---QFVLAKVNCDA 54 (96)
T ss_pred ChHHHHHhc--CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC---cEEEEEEeccC
Confidence 678778653 588999999999999999999999999999976 69999999985
No 18
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.48 E-value=1.2e-13 Score=99.35 Aligned_cols=59 Identities=29% Similarity=0.490 Sum_probs=53.1
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 96 ~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+..+.+.++|.+.+. ++++|+|+||||||++|+.|.|.+++++++|++ +.|++||+++
T Consensus 5 ~v~~i~~~~~~~~~i~----~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~ 63 (113)
T cd02989 5 KYREVSDEKEFFEIVK----SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEK 63 (113)
T ss_pred CeEEeCCHHHHHHHHh----CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEccc
Confidence 4567777799999997 678999999999999999999999999999865 8999999986
No 19
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.47 E-value=7.4e-14 Score=98.28 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=45.8
Q ss_pred HHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 104 ~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.++.+++.+. ++++|+|+|||+||++|+.+.|.|+++++.|++ +.+++||.+
T Consensus 7 ~~~~~~~~~~--~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~ 58 (100)
T cd02999 7 NIALDLMAFN--REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEES 58 (100)
T ss_pred hHHHHHHHhc--CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECC
Confidence 4566777654 899999999999999999999999999999965 789999987
No 20
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.47 E-value=8e-14 Score=119.65 Aligned_cols=140 Identities=17% Similarity=0.195 Sum_probs=95.3
Q ss_pred cCCcccCC-cccEEEecccccccchhhhcccccCCCCCCcccccccc----cccCcccccccchhhhhh-ccCC-----C
Q 031258 17 NADGKFSS-KVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTGLAS----LKSNHNLRHGKVKGLIDA-TQGE-----S 85 (163)
Q Consensus 17 ~~~~~~~~-~i~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~----~~~~~~~~~~~~~~~~~~-~~~~-----s 85 (163)
.+|++|+| ++.|+++|....+..... + ++.....|...+...+- ......+..+.+..++.. ..|. .
T Consensus 259 ~~a~~~~~~~i~f~~~d~~~~~~~~~~-~-~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~ 336 (462)
T TIGR01130 259 EAAKKFRGKFVNFAVADEEDFGRELEY-F-GLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLK 336 (462)
T ss_pred HHHHHCCCCeEEEEEecHHHhHHHHHH-c-CCCccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeec
Confidence 47889997 999999988755433333 3 55555577655554332 111114556667777776 3332 1
Q ss_pred CCCCCCCCccceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 86 DEDDDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 86 ~~~~~~~~~~~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
++..+......+.. ++..+|.+.+.+ .+++|+|.|||+||++|+.+.|.++++++.+++....+.|+++|++.
T Consensus 337 se~~p~~~~~~v~~-l~~~~f~~~v~~---~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~ 409 (462)
T TIGR01130 337 SEPIPEDDEGPVKV-LVGKNFDEIVLD---ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATA 409 (462)
T ss_pred cCCCCccCCCccEE-eeCcCHHHHhcc---CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCC
Confidence 22222212334555 557899998874 78999999999999999999999999999998633379999999874
No 21
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.46 E-value=1.8e-13 Score=96.70 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=51.1
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCC---CCCEEEEEEEccc
Q 031258 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQ---EAPVIFLKHNVST 162 (163)
Q Consensus 97 v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~---~~~v~f~kVDvde 162 (163)
+.+ .+.++|++++. .+++++|.||||||++|+.+.|.|+++++.+++. ..++.|++||+|+
T Consensus 3 v~~-l~~~~f~~~i~----~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~ 66 (108)
T cd02996 3 IVS-LTSGNIDDILQ----SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK 66 (108)
T ss_pred eEE-cCHhhHHHHHh----cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 344 46889999886 7789999999999999999999999999987531 1259999999985
No 22
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.45 E-value=1.8e-13 Score=97.92 Aligned_cols=61 Identities=30% Similarity=0.507 Sum_probs=50.8
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 96 ~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+.++. .++|.+.+..+. .+++|+|+||||||++|+.|.|.+++++++|++ +.|++||+++
T Consensus 5 ~v~~i~-~~~f~~~i~~~~-~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~~~ 65 (113)
T cd02957 5 EVREIS-SKEFLEEVTKAS-KGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINAEK 65 (113)
T ss_pred eEEEEc-HHHHHHHHHccC-CCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEchh
Confidence 345555 489999887421 248999999999999999999999999999964 8999999985
No 23
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.44 E-value=2.5e-13 Score=95.51 Aligned_cols=56 Identities=25% Similarity=0.431 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+.++|++.+.. .+++++|.|||+||++|+.+.|.|+++++.+.+ .+.|+.||+++
T Consensus 5 l~~~~~~~~i~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~v~~~~ 60 (109)
T cd03002 5 LTPKNFDKVVHN---TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG---LVQVAAVDCDE 60 (109)
T ss_pred cchhhHHHHHhc---CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC---CceEEEEecCc
Confidence 567899999874 688899999999999999999999999999975 68899999875
No 24
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.44 E-value=2.9e-13 Score=93.89 Aligned_cols=58 Identities=21% Similarity=0.437 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
++.++|++++.. .+++++|.|||+||++|+.+.|.|+++++.+++ ...+.|+++|+++
T Consensus 5 l~~~~f~~~i~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~ 62 (104)
T cd02995 5 VVGKNFDEVVLD---SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-DDNVVIAKMDATA 62 (104)
T ss_pred EchhhhHHHHhC---CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-CCCEEEEEEeCcc
Confidence 557899999874 568999999999999999999999999999975 3479999999875
No 25
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.43 E-value=3.5e-13 Score=96.96 Aligned_cols=61 Identities=23% Similarity=0.326 Sum_probs=51.7
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 97 v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
+.+ .+.++|++.+.. .+++|+|+|||+||++|+.+.|.|+++++.+++..+.+.|+++|++
T Consensus 3 v~~-l~~~~f~~~i~~---~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~ 63 (114)
T cd02992 3 VIV-LDAASFNSALLG---SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63 (114)
T ss_pred eEE-CCHHhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence 344 568899999984 5589999999999999999999999999998754446999999964
No 26
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.43 E-value=3.5e-13 Score=95.78 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+.++|+.++... ..+++++|.|||+||++|+++.|.|.++++.|++ .++.++.||+|.
T Consensus 6 ~~~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~--~~~~~~~vd~d~ 64 (109)
T cd02993 6 LSRAEIEALAKGE-RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG--SNVKVAKFNADG 64 (109)
T ss_pred ccHHHHHHHHhhh-hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc--CCeEEEEEECCc
Confidence 5678999888532 2678999999999999999999999999999975 359999999874
No 27
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.42 E-value=4.6e-13 Score=93.24 Aligned_cols=57 Identities=26% Similarity=0.505 Sum_probs=47.5
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 97 v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+.+ ++.++|++++. +. ++|+|||+||++|+.+.|.|+++++.+++ .++.|++||+++
T Consensus 3 v~~-l~~~~f~~~~~-----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~~~ 59 (101)
T cd02994 3 VVE-LTDSNWTLVLE-----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDD--LGINVAKVDVTQ 59 (101)
T ss_pred eEE-cChhhHHHHhC-----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhcc--CCeEEEEEEccC
Confidence 445 46889998773 33 78999999999999999999999998764 369999999875
No 28
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.42 E-value=2.8e-13 Score=93.48 Aligned_cols=57 Identities=33% Similarity=0.471 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 100 FKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 100 i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+|.++|++.+.. .++++||.||++||++|+.+.|.|.++++.+++ ++.|+.||+++
T Consensus 3 ~lt~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~ 59 (103)
T PF00085_consen 3 VLTDENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDE 59 (103)
T ss_dssp EESTTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTT
T ss_pred ECCHHHHHHHHHc---cCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhc
Confidence 3568899999983 489999999999999999999999999999986 79999999985
No 29
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.41 E-value=5.4e-13 Score=92.46 Aligned_cols=57 Identities=23% Similarity=0.437 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+.++|++.+. .+ +++|.|||+||++|+.+.|.++++++++++....+.|++||++.
T Consensus 5 l~~~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~ 61 (102)
T cd03005 5 LTEDNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ 61 (102)
T ss_pred CCHHHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC
Confidence 56789999996 34 49999999999999999999999999997533469999999874
No 30
>PTZ00051 thioredoxin; Provisional
Probab=99.41 E-value=7.3e-13 Score=91.51 Aligned_cols=58 Identities=34% Similarity=0.589 Sum_probs=52.1
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 97 v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+.++.+.++|.+++. .+++++|.|||+||++|+.+.|.++++++++.+ +.|+.||+++
T Consensus 2 v~~i~~~~~~~~~~~----~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~ 59 (98)
T PTZ00051 2 VHIVTSQAEFESTLS----QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK----MVFVKVDVDE 59 (98)
T ss_pred eEEecCHHHHHHHHh----cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC----cEEEEEECcc
Confidence 567788899999886 789999999999999999999999999998764 8999999875
No 31
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.41 E-value=7.1e-13 Score=96.69 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=52.0
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCcc--cc--ccHHHHHHHHHHh--CCCCCCEEEEEEEccc
Q 031258 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGS--CK--YIEQGFSKLCKGS--GDQEAPVIFLKHNVST 162 (163)
Q Consensus 96 ~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~--Ck--~~~P~~~~la~~~--~~~~~~v~f~kVDvde 162 (163)
.+.. +|.+||++.+.. .+.++|++|||+||+| |+ ++.|.+.++++++ .+ ++.|++||+|+
T Consensus 10 ~v~~-lt~~nF~~~v~~---~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~---~v~~~kVD~d~ 75 (120)
T cd03065 10 RVID-LNEKNYKQVLKK---YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK---GIGFGLVDSKK 75 (120)
T ss_pred ceee-CChhhHHHHHHh---CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC---CCEEEEEeCCC
Confidence 3444 567999999985 6789999999999987 99 9999999999999 55 69999999986
No 32
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.41 E-value=7.3e-13 Score=102.34 Aligned_cols=63 Identities=22% Similarity=0.337 Sum_probs=53.3
Q ss_pred cceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 95 ~~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
..+.++.+.++|.+.+..+ ..+.+|||+|||+||++|+.|.|.|++|+++|.. +.|++||+++
T Consensus 62 g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~----vkF~kVd~d~ 124 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA----VKFCKIRASA 124 (175)
T ss_pred CeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC----eEEEEEeccc
Confidence 4567776668999998743 1345999999999999999999999999999964 9999999985
No 33
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.40 E-value=6.9e-13 Score=96.62 Aligned_cols=58 Identities=22% Similarity=0.448 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHhhccCCCEEEEEEEC-------CCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 100 FKTDAEFFKILEKSKETGSLVVVDFYR-------TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 100 i~t~~~f~~~l~~s~~~~k~VvV~FyA-------~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+.+.++|.+.+... ++++|+|+||| +|||+|+.+.|.++++++++++ ++.|++||+++
T Consensus 6 ~~~~~~f~~~i~~~--~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~---~v~fv~Vdvd~ 70 (119)
T cd02952 6 VRGYEEFLKLLKSH--EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE---DCVFIYCDVGD 70 (119)
T ss_pred ccCHHHHHHHHHhc--CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC---CCEEEEEEcCC
Confidence 35678999998853 57899999999 9999999999999999999975 58999999975
No 34
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.39 E-value=4.5e-13 Score=95.74 Aligned_cols=58 Identities=17% Similarity=0.120 Sum_probs=48.5
Q ss_pred CCHHHHHHHH-HhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 101 KTDAEFFKIL-EKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 101 ~t~~~f~~~l-~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+.++|++.+ ..+ .+++++|+||||||++|+.+.|.++++++++++ .++.|++||++.
T Consensus 9 ~~~~~~~~~~~~~~--~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~d~ 67 (111)
T cd02963 9 LTFSQYENEIVPKS--FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP--LGVGIATVNAGH 67 (111)
T ss_pred eeHHHHHHhhcccc--CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh--cCceEEEEeccc
Confidence 3567887544 322 689999999999999999999999999999975 258999999874
No 35
>PRK09381 trxA thioredoxin; Provisional
Probab=99.39 E-value=1e-12 Score=92.77 Aligned_cols=60 Identities=23% Similarity=0.406 Sum_probs=51.3
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 96 ~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.|.++ ++++|.+.+.+ .+++++|+||++||++|+.+.|.|+++++.|++ ++.|+.+|++.
T Consensus 4 ~v~~~-~~~~~~~~v~~---~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~---~~~~~~vd~~~ 63 (109)
T PRK09381 4 KIIHL-TDDSFDTDVLK---ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQ 63 (109)
T ss_pred cceee-ChhhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC---CcEEEEEECCC
Confidence 35554 56799976653 688999999999999999999999999999976 69999999985
No 36
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.37 E-value=9.2e-13 Score=98.37 Aligned_cols=53 Identities=28% Similarity=0.441 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 103 ~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
...|++++. .++++||+|||+||++|+.|.|.+.++++.|++ ++.|+.||+|.
T Consensus 10 ~~~~~~a~~----~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~v~v~vd~ 62 (142)
T cd02950 10 STPPEVALS----NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD---QVNFVMLNVDN 62 (142)
T ss_pred cCCHHHHHh----CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc---CeeEEEEEcCC
Confidence 346777775 899999999999999999999999999999976 57888888773
No 37
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.35 E-value=2.6e-12 Score=88.50 Aligned_cols=56 Identities=27% Similarity=0.498 Sum_probs=48.8
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 102 t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+.++|++++..+ .+++|+|.|||+||++|+.|.|.++++++++.. .+.++++|+++
T Consensus 1 s~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~ 56 (97)
T cd02984 1 SEEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEE 56 (97)
T ss_pred CHHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEcccc
Confidence 357899999854 369999999999999999999999999999733 69999999874
No 38
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.34 E-value=2.7e-12 Score=89.09 Aligned_cols=56 Identities=25% Similarity=0.390 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+.++|++.+.. .+++++|.|||+||++|+.+.|.|.++++++.+ .+.|+.+|+++
T Consensus 5 l~~~~~~~~i~~---~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~---~~~~~~id~~~ 60 (103)
T cd03001 5 LTDSNFDKKVLN---SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG---IVKVGAVDADV 60 (103)
T ss_pred cCHHhHHHHHhc---CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CceEEEEECcc
Confidence 467899998874 567899999999999999999999999999876 69999999875
No 39
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.34 E-value=1.7e-12 Score=91.27 Aligned_cols=55 Identities=25% Similarity=0.462 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 103 ~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.++|+++. .+++++|.|||+||++|+.+.|.|+++++.+++....+.++++|+++
T Consensus 6 ~~~~~~~~-----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~ 60 (104)
T cd03000 6 DDSFKDVR-----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA 60 (104)
T ss_pred hhhhhhhc-----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc
Confidence 36788743 56799999999999999999999999999996433369999999874
No 40
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.33 E-value=3.2e-12 Score=88.68 Aligned_cols=57 Identities=26% Similarity=0.484 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
++..+|++.+. .+++++|.|||+||++|+.+.|.+.++++.+++ ...+.++++|+++
T Consensus 5 l~~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~ 61 (104)
T cd02997 5 LTDEDFRKFLK----KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-DGKGVLAAVDCTK 61 (104)
T ss_pred echHhHHHHHh----hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-CCceEEEEEECCC
Confidence 45679999887 667999999999999999999999999999974 3468999999875
No 41
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.32 E-value=2.9e-12 Score=102.64 Aligned_cols=63 Identities=21% Similarity=0.341 Sum_probs=52.8
Q ss_pred ceeecCCHHHHHHHHHhhc-cCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 96 CVREFKTDAEFFKILEKSK-ETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 96 ~v~~i~t~~~f~~~l~~s~-~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+.+ .+.++|++.+..+. ..+++++|+||||||++|+.+.|.|+++++++++ .+.|++||+++
T Consensus 31 ~Vv~-Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~---~v~~~~VD~~~ 94 (224)
T PTZ00443 31 ALVL-LNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG---QVNVADLDATR 94 (224)
T ss_pred CcEE-CCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC---CeEEEEecCcc
Confidence 4555 56889999887431 1358999999999999999999999999999986 69999999875
No 42
>PRK10996 thioredoxin 2; Provisional
Probab=99.32 E-value=4.6e-12 Score=94.17 Aligned_cols=55 Identities=27% Similarity=0.489 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+.++|++++. .+++|+|+|||+||++|+.+.|.+.++++++.+ ++.|++||+++
T Consensus 40 ~~~~~~~~~i~----~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~ 94 (139)
T PRK10996 40 ATGETLDKLLQ----DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG---KVRFVKVNTEA 94 (139)
T ss_pred cCHHHHHHHHh----CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEeCCC
Confidence 56889999886 789999999999999999999999999999876 69999999985
No 43
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.32 E-value=3.2e-12 Score=89.62 Aligned_cols=52 Identities=25% Similarity=0.384 Sum_probs=45.6
Q ss_pred HHHHHHHHhhccCCCEEEEEEECCCCccccccHHHH---HHHHHHhCCCCCCEEEEEEEccc
Q 031258 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 104 ~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~---~~la~~~~~~~~~v~f~kVDvde 162 (163)
+.|++++. ++++|+|.|||+||++|+.|.|.+ .++++.+++ ++.++.||+++
T Consensus 2 ~~~~~~~~----~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~ 56 (104)
T cd02953 2 AALAQALA----QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTK 56 (104)
T ss_pred HHHHHHHH----cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCC
Confidence 56788776 889999999999999999999988 688888875 69999999864
No 44
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.29 E-value=6.2e-12 Score=86.69 Aligned_cols=56 Identities=27% Similarity=0.541 Sum_probs=49.9
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 102 t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
++++|++++. ++++++|.||++||++|+.+.|.|+++++.+++ ..++.++.+|+++
T Consensus 2 ~~~~~~~~~~----~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~ 57 (102)
T TIGR01126 2 TASNFDDIVL----SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKG-DPDIVLAKVDATA 57 (102)
T ss_pred chhhHHHHhc----cCCcEEEEEECCCCHHHHhhChHHHHHHHHhcc-CCceEEEEEEccc
Confidence 5689999986 789999999999999999999999999999975 3369999999875
No 45
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.29 E-value=8.1e-12 Score=109.23 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=54.3
Q ss_pred CCccceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 92 CPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 92 ~~~~~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+....|.+ ++.++|+.++... ..+++|||+||||||++|+.|.|.|++++++|++ ..+.|++||+|.
T Consensus 348 ~~~~~Vv~-L~~~nf~~~v~~~-~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~--~~v~~~kVdvD~ 414 (463)
T TIGR00424 348 FDSNNVVS-LSRPGIENLLKLE-ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG--SGVKVAKFRADG 414 (463)
T ss_pred cCCCCeEE-CCHHHHHHHHhhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc--CCcEEEEEECCC
Confidence 33334555 6688999998521 2789999999999999999999999999999975 248899998873
No 46
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.3e-12 Score=112.71 Aligned_cols=64 Identities=25% Similarity=0.442 Sum_probs=56.7
Q ss_pred ccceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 94 ~~~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+.|.+ ++.++|++.+. .+..++|.|||||||||+.++|.+++.+..+++....+.+++||+.+
T Consensus 24 ~~~Vl~-Lt~dnf~~~i~----~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~ 87 (493)
T KOG0190|consen 24 EEDVLV-LTKDNFKETIN----GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE 87 (493)
T ss_pred ccceEE-EecccHHHHhc----cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch
Confidence 445555 56789999998 88999999999999999999999999999998866789999999864
No 47
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.28 E-value=8.7e-12 Score=86.39 Aligned_cols=58 Identities=29% Similarity=0.516 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.++++|++.+.. .+++++|.|||+||++|+.+.|.|.++++.++. ...+.++++|+++
T Consensus 5 l~~~~~~~~~~~---~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~ 62 (105)
T cd02998 5 LTDSNFDKVVGD---DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-EDDVVIAKVDADE 62 (105)
T ss_pred cchhcHHHHhcC---CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-CCCEEEEEEECCC
Confidence 457899988763 567999999999999999999999999999973 3479999999875
No 48
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.27 E-value=1e-11 Score=97.31 Aligned_cols=61 Identities=21% Similarity=0.404 Sum_probs=50.6
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 96 ~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+.++ +.++|...+..+ ..+.+|||+|||+||++|+.|.|.|++|+.+|.+ +.|++||++.
T Consensus 83 ~v~ei-s~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~ad~ 143 (192)
T cd02988 83 EVYEI-SKPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIISTQ 143 (192)
T ss_pred eEEEe-CHHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEhHH
Confidence 45554 678898776543 1356999999999999999999999999999964 8999999975
No 49
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.26 E-value=9.1e-12 Score=89.63 Aligned_cols=55 Identities=11% Similarity=-0.045 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCC--CccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTS--CGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~W--C~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+..+|++.+. .+..+||.|||+| ||+|+.+.|.+++++++|++ .+.|++||+|+
T Consensus 15 ~~~~~~~~~~~----~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~---~v~f~kVdid~ 71 (111)
T cd02965 15 VDAATLDDWLA----AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG---RFRAAVVGRAD 71 (111)
T ss_pred cccccHHHHHh----CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC---cEEEEEEECCC
Confidence 45789998885 7899999999997 99999999999999999986 68999999986
No 50
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.26 E-value=5.1e-12 Score=91.47 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=41.3
Q ss_pred HHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEc
Q 031258 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (163)
Q Consensus 105 ~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDv 160 (163)
+++++++.+..++++|+|+|||+||++|+.|.|.+.+....+.. ..++..+.+|.
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~ 61 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLED 61 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecC
Confidence 45666666656899999999999999999999999998776543 22454444443
No 51
>PLN02309 5'-adenylylsulfate reductase
Probab=99.25 E-value=1.9e-11 Score=106.77 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=56.3
Q ss_pred CCCCccceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 90 DLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 90 ~~~~~~~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
+.+....|+. ++.++|++++... +.++++||+||||||++|+.|.|.|++++++|.+ .++.|++||+|
T Consensus 340 dl~~~~~Vv~-Lt~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~--~~V~f~kVD~d 407 (457)
T PLN02309 340 DIFNSQNVVA-LSRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG--SGVKVAKFRAD 407 (457)
T ss_pred cccCCCCcEE-CCHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc--CCeEEEEEECC
Confidence 3454455655 6688999988532 2789999999999999999999999999999975 36999999998
No 52
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.22 E-value=3.2e-11 Score=82.69 Aligned_cols=55 Identities=36% Similarity=0.576 Sum_probs=48.4
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 102 t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+.++|.+.+.. .+++++|.||++||++|+.+.|.++++++.+.+ ++.|+.+|+++
T Consensus 2 ~~~~~~~~~~~---~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~ 56 (101)
T TIGR01068 2 TDANFDETIAS---SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNVDE 56 (101)
T ss_pred CHHHHHHHHhh---cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEECCC
Confidence 46788888863 577999999999999999999999999999865 69999999874
No 53
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.21 E-value=2.6e-11 Score=88.47 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+.++|.+.+. +++.++|+||++|||+|+.+.|.+++++++. ++.|+.||+|
T Consensus 11 it~~~~~~~i~----~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd 62 (122)
T TIGR01295 11 TTVVRALEALD----KKETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSE 62 (122)
T ss_pred cCHHHHHHHHH----cCCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECC
Confidence 56788999997 7889999999999999999999999999983 3567778776
No 54
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.19 E-value=6.3e-11 Score=80.51 Aligned_cols=57 Identities=28% Similarity=0.539 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
++.++|.+.+. ++++++|.||++||++|+.+.|.|.++++.+.. ...+.|+.+|+++
T Consensus 3 l~~~~~~~~i~----~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 59 (101)
T cd02961 3 LTDDNFDELVK----DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDCTA 59 (101)
T ss_pred ccHHHHHHHHh----CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeeccc
Confidence 45679999998 566999999999999999999999999999941 2379999999875
No 55
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.17 E-value=3.9e-11 Score=90.31 Aligned_cols=47 Identities=9% Similarity=0.186 Sum_probs=40.6
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCC-----CCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQ-----EAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~-----~~~v~f~kVDvde 162 (163)
++++|+|+|||+||++|+.+.|.+.++++++++. ..++.++.|+.|+
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~ 75 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ 75 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC
Confidence 7899999999999999999999999999887642 2358999998874
No 56
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.16 E-value=4.9e-11 Score=86.29 Aligned_cols=52 Identities=10% Similarity=0.248 Sum_probs=42.5
Q ss_pred HHHHHHHHhhccCC-CEEEEEEECCCCccccccHHHHH---HHHHHhCCCCCCEEEEEEEccc
Q 031258 104 AEFFKILEKSKETG-SLVVVDFYRTSCGSCKYIEQGFS---KLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 104 ~~f~~~l~~s~~~~-k~VvV~FyA~WC~~Ck~~~P~~~---~la~~~~~~~~~v~f~kVDvde 162 (163)
+.++++.. ++ ++|+|.|||+||++|+.|.|.+. ++.+.+.+ ++.++.||+++
T Consensus 4 ~~~~~a~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~ 59 (125)
T cd02951 4 EDLAEAAA----DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDG 59 (125)
T ss_pred HHHHHHHH----cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccC
Confidence 45566665 77 99999999999999999999885 67777754 68999999874
No 57
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.15 E-value=1.2e-10 Score=80.82 Aligned_cols=51 Identities=18% Similarity=0.457 Sum_probs=44.1
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 106 FFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 106 f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
++..+.. .+++|+|.|||+||++|+.+.|.++++++++++ ++.++++|+++
T Consensus 5 ~~~~~~~---~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~v~~~~id~d~ 55 (97)
T cd02949 5 LRKLYHE---SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG---AVHFVEIDIDE 55 (97)
T ss_pred HHHHHHh---CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC---ceEEEEEECCC
Confidence 3444543 789999999999999999999999999999975 69999999975
No 58
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.14 E-value=8.5e-11 Score=100.93 Aligned_cols=58 Identities=22% Similarity=0.499 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
++.++|++++. .+++++|.|||+||++|+.+.|.|.++++.+.+...++.|++||+++
T Consensus 6 l~~~~~~~~i~----~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~ 63 (462)
T TIGR01130 6 LTKDNFDDFIK----SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE 63 (462)
T ss_pred CCHHHHHHHHh----cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC
Confidence 56889999997 78899999999999999999999999999987544569999999975
No 59
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.13 E-value=1.1e-10 Score=80.23 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=39.1
Q ss_pred CCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 117 ~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+|+++|+|||+||++|+...|.+.++.++|++ +.++.|+.|..|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~ 45 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDE 45 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCC
Confidence 58999999999999999999999999999994 4589999998874
No 60
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.13 E-value=1e-10 Score=83.97 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=42.5
Q ss_pred HHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 105 ~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+|.+.+. ++..++|.|||+||++|+.+.|.++++++.+ + .+.|.+||+|+
T Consensus 14 ~~~~~l~----~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~d~ 63 (113)
T cd02975 14 EFFKEMK----NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDFDE 63 (113)
T ss_pred HHHHHhC----CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeCCc
Confidence 3555554 6778999999999999999999999999887 3 58999999875
No 61
>PTZ00102 disulphide isomerase; Provisional
Probab=99.11 E-value=1.5e-10 Score=100.48 Aligned_cols=61 Identities=25% Similarity=0.502 Sum_probs=52.8
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 97 v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+.. .+.++|++++. .++.++|.|||+||++|+++.|.|.++++.+.+...++.|++||+++
T Consensus 34 v~~-l~~~~f~~~i~----~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~ 94 (477)
T PTZ00102 34 VTV-LTDSTFDKFIT----ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE 94 (477)
T ss_pred cEE-cchhhHHHHHh----cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC
Confidence 444 56889999987 77899999999999999999999999999886544579999999875
No 62
>PTZ00062 glutaredoxin; Provisional
Probab=99.09 E-value=2.1e-10 Score=90.74 Aligned_cols=54 Identities=13% Similarity=0.072 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+.++|++.+.. ..+.+|++|||+||++|++|.|.+.+|+++|++ +.|++||+|
T Consensus 4 ~~~ee~~~~i~~---~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~----~~F~~V~~d 57 (204)
T PTZ00062 4 IKKEEKDKLIES---NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS----LEFYVVNLA 57 (204)
T ss_pred CCHHHHHHHHhc---CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC----cEEEEEccc
Confidence 467889998862 347899999999999999999999999999975 999999986
No 63
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.07 E-value=2.5e-10 Score=83.50 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=40.0
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+++|+|+|||+||++|+.+.|.+.++++++++...++.++.|++|+
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~ 62 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR 62 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Confidence 78999999999999999999999999999997522357777777664
No 64
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.03 E-value=4.4e-10 Score=81.72 Aligned_cols=47 Identities=11% Similarity=0.170 Sum_probs=39.4
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+++|||+|||+||++|+.+.|.+.++.+++.+...++.++.|++|.
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~ 63 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR 63 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 68899999999999999999999999999987522357777777663
No 65
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.00 E-value=7.8e-10 Score=99.27 Aligned_cols=63 Identities=27% Similarity=0.445 Sum_probs=52.8
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHH---HHHHHHhCCCCCCEEEEEEEccc
Q 031258 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 96 ~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~---~~la~~~~~~~~~v~f~kVDvde 162 (163)
....+.+.++|++.+..+..++|+|+|+|||+||++|+.|.|.. .++.+.+++ +.++++|+++
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~----~~~v~vDvt~ 518 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD----TVLLQADVTA 518 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC----CEEEEEECCC
Confidence 34566788999999987766789999999999999999999875 677787753 8899999874
No 66
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.99 E-value=3.9e-10 Score=85.46 Aligned_cols=41 Identities=15% Similarity=0.406 Sum_probs=33.6
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.++..+|+|||+||++|+.+.|.+.+++++|+ +.++.|++|
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d 89 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLD 89 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeC
Confidence 45677999999999999999999999999984 345455554
No 67
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.96 E-value=1.5e-09 Score=72.18 Aligned_cols=50 Identities=34% Similarity=0.598 Sum_probs=43.4
Q ss_pred HHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 105 ~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+|++.+. .+++++|.||++||++|+.+.|.++++.+..+ ++.|+.+|+++
T Consensus 2 ~~~~~~~----~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~i~~~~ 51 (93)
T cd02947 2 EFEELIK----SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYP----KVKFVKVDVDE 51 (93)
T ss_pred chHHHHh----cCCcEEEEEECCCChhHHHhhHHHHHHHHHCC----CceEEEEECCC
Confidence 5777776 55899999999999999999999999998833 59999999874
No 68
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.95 E-value=1.2e-09 Score=77.20 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=33.8
Q ss_pred CCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEE
Q 031258 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKH 158 (163)
Q Consensus 117 ~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kV 158 (163)
+++++|+||++||++|+.+.|.++++++.+++ ++.++.+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v 59 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLA 59 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEE
Confidence 78999999999999999999999999998865 4655555
No 69
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.95 E-value=4.3e-10 Score=76.03 Aligned_cols=55 Identities=24% Similarity=0.466 Sum_probs=43.1
Q ss_pred HHHHHHHhhccCCCEEEEEEECCCCccccccHHHH---HHHHHHhCCCCCCEEEEEEEccc
Q 031258 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 105 ~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~---~~la~~~~~~~~~v~f~kVDvde 162 (163)
+|++.+..+.+.+++++|+|+|+||++|+.|...+ .++.+.+.. ++++++||+++
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~---~fv~v~vd~~~ 62 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK---NFVLVKVDVDD 62 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH---CSEEEEEETTT
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC---CEEEEEEEcCC
Confidence 46666666666999999999999999999999776 445553433 68999999864
No 70
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.94 E-value=1.5e-09 Score=75.35 Aligned_cols=44 Identities=16% Similarity=0.345 Sum_probs=41.3
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.++++++.||++||++|+.+.|.+++++++|++ ++.|+.||+++
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~---~v~f~~vd~~~ 54 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKG---KLLFVVVDADD 54 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC---eEEEEEEchHh
Confidence 468999999999999999999999999999986 79999999986
No 71
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.92 E-value=2.5e-09 Score=78.38 Aligned_cols=53 Identities=11% Similarity=0.203 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHH---HHHHHHhCCCCCCEEEEEEEccc
Q 031258 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 103 ~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~---~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+.++++.. .+|+|+|+|||+||++|+.|.+.. .++.+.+.. ++++++||+++
T Consensus 5 ~eal~~Ak~----~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~ 60 (124)
T cd02955 5 EEAFEKARR----EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREE 60 (124)
T ss_pred HHHHHHHHH----cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCc
Confidence 345666555 899999999999999999998732 355665543 69999999986
No 72
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.91 E-value=1.9e-09 Score=78.20 Aligned_cols=53 Identities=13% Similarity=0.276 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEEC--CCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYR--TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA--~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
++..+|+++|. .++.+||.||| |||+ . .|.+++|+.+|......+.+++||++
T Consensus 6 L~~~nF~~~v~----~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~ 60 (116)
T cd03007 6 LDTVTFYKVIP----KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIK 60 (116)
T ss_pred CChhhHHHHHh----cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEecc
Confidence 67899999997 78999999999 7777 2 25555555555321235999999995
No 73
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.91 E-value=8.6e-10 Score=91.44 Aligned_cols=47 Identities=23% Similarity=0.411 Sum_probs=42.8
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
....++|+||||||+||+.+.|+|.++.-++++.+..+.+.|+|+..
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~ 88 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATR 88 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeeccccccc
Confidence 67899999999999999999999999999998877789999999753
No 74
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.86 E-value=2.8e-09 Score=71.34 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=32.9
Q ss_pred EEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEE
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHN 159 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVD 159 (163)
.|+|||+||++|+.+.|.+++++++++. ++.|++||
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~---~~~~~~v~ 37 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI---DAEFEKVT 37 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence 4789999999999999999999999976 68898887
No 75
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.85 E-value=3.9e-09 Score=83.01 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=39.6
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+++|||+|||+||++|+...|.+.++.++|++ .++.++.|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~--~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP--LGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc--CceEEEEecch
Confidence 678999999999999999999999999999975 35888888764
No 76
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.84 E-value=3.4e-09 Score=82.08 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=34.9
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+++++|+|||+||++|+.+.|.+.+++++ ++.++.|+.++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~------~~~vi~v~~~~ 107 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKD 107 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc------CCEEEEEECCC
Confidence 689999999999999999999999998652 36778887653
No 77
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.84 E-value=5.5e-09 Score=69.56 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=35.6
Q ss_pred EEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 120 VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.|.-||++||++|+.+.|.+++++++++. .+.+++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~~vd~~~ 41 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD---AVEVEYINVME 41 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC---ceEEEEEeCcc
Confidence 46679999999999999999999999965 58999999875
No 78
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.83 E-value=6.4e-09 Score=75.30 Aligned_cols=43 Identities=19% Similarity=0.363 Sum_probs=38.6
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDv 160 (163)
.++++||+|||+||++|+...|.+.++.++|++ .++.++.|+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~--~~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD--DGLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc--CCeEEEEecc
Confidence 578999999999999999999999999999985 3688888865
No 79
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.81 E-value=8.2e-09 Score=77.28 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=38.3
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+++|||+|||+||+ |+...|.+.+++++|++ .++.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~--~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD--RGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC--CCEEEEEeccC
Confidence 688999999999999 99999999999999975 36888888754
No 80
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.80 E-value=6.9e-09 Score=74.89 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=35.7
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.++++||+|||+||++|+.+.|.++++.+.+ ++.++.|+.+
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~~ 64 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINYK 64 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEECC
Confidence 6889999999999999999999999998876 2777777754
No 81
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.79 E-value=7.3e-09 Score=91.94 Aligned_cols=43 Identities=9% Similarity=0.146 Sum_probs=37.8
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDv 160 (163)
++++|||+|||+||++|+.+.|.+++++++|++ +++.|+.|.+
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~--~~v~VI~Vs~ 97 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKF--SSANLITVAS 97 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc--CCeEEEEEec
Confidence 789999999999999999999999999999974 3577777754
No 82
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.79 E-value=1.3e-08 Score=83.69 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=35.2
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.++++||+|||+||++|+.+.|++.+++++|+ +.++.|++|
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD 205 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVD 205 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCC
Confidence 68899999999999999999999999999995 445555554
No 83
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=9e-09 Score=88.02 Aligned_cols=133 Identities=15% Similarity=0.126 Sum_probs=80.1
Q ss_pred cCCcccCCcccEEEecccccccchhhhcccccCCCCCCccccccc--ccccCcccccccchhhhhhccCCCCCCCCCCCc
Q 031258 17 NADGKFSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTGLA--SLKSNHNLRHGKVKGLIDATQGESDEDDDLCPV 94 (163)
Q Consensus 17 ~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 94 (163)
+++..++|++.+.-+|.+........+. + .-.|+..+..-. .+..........+..+.......+... ...
T Consensus 71 ~~~~~l~~~~~~~~vd~~~~~~~~~~y~--i--~gfPtl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 143 (383)
T KOG0191|consen 71 KLAKALKGKVKIGAVDCDEHKDLCEKYG--I--QGFPTLKVFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKK---LVE 143 (383)
T ss_pred HHHHHhcCceEEEEeCchhhHHHHHhcC--C--ccCcEEEEEcCCCceeeccCcccHHHHHHHHHHhhcccccc---ccC
Confidence 4667788888888888885544333332 2 344544433222 011111111222222222111111111 111
Q ss_pred cceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 95 ~~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
..+.. ++..+|+..+.. ....++|.||||||+||+.+.|.|++++..++. ...+.++++|++
T Consensus 144 ~~v~~-l~~~~~~~~~~~---~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 144 GEVFE-LTKDNFDETVKD---SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDAT 205 (383)
T ss_pred CceEE-ccccchhhhhhc---cCcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccc
Confidence 12444 557799988875 677899999999999999999999999999864 347999999875
No 84
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.77 E-value=1.4e-08 Score=76.12 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=39.0
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDv 160 (163)
.++++||.|||+||++|+...|.+.++.++|++ .++.++.|++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~--~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGP--SHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh--CCeEEEEEec
Confidence 688999999999999999999999999999975 3688988885
No 85
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=2.1e-09 Score=95.01 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=55.6
Q ss_pred ccceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 94 ~~~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
..++.+ ++.++|..++.. ..+-.+|+||++|||+|+.++|+|+++++....+..-+.++.||+-+
T Consensus 38 ~D~ii~-Ld~~tf~~~v~~---~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~ 102 (606)
T KOG1731|consen 38 DDPIIE-LDVDTFNAAVFG---SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCAD 102 (606)
T ss_pred CCCeEE-eehhhhHHHhcc---cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccc
Confidence 345555 668999999985 44688999999999999999999999999999888788999999753
No 86
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.73 E-value=1.7e-08 Score=81.52 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=39.7
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+++|||+|||+||++|+...|.+.+++++|++ .++.++.|+++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~--~Gv~VIgV~~d 141 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT--QGFEILAFPCN 141 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc--CCcEEEEEecc
Confidence 578999999999999999999999999999986 35888888864
No 87
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.73 E-value=1.4e-08 Score=74.94 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=38.0
Q ss_pred CCCEEEEEEECC-CCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~-WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.++++||+||++ |||+|+...|.+.++.+.|++ .++.++.|..+
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~--~~v~~v~v~~~ 71 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKD--KGVDVVGVSSD 71 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT--TTCEEEEEEES
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhcc--CceEEEEeccc
Confidence 799999999999 999999999999999999876 34666666554
No 88
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.71 E-value=2.5e-08 Score=64.35 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=33.6
Q ss_pred EEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
++.||++||++|+.+.|.++++++.+. ++.+..+|+++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~id~~~ 40 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP----NISAEMIDAAE 40 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC----ceEEEEEEccc
Confidence 677999999999999999999988764 49999999875
No 89
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.70 E-value=1.4e-08 Score=74.99 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHH---HHHHHhCCCCCCEEEEEEEcc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFS---KLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~---~la~~~~~~~~~v~f~kVDvd 161 (163)
....+|++.+..+++++|+|+|+||++||++|+.|...+- ++.+.... +++.+++|+|
T Consensus 7 ~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d 67 (130)
T cd02960 7 IWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHE 67 (130)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEec
Confidence 3345788888888889999999999999999999997542 33333322 4777777765
No 90
>PHA02125 thioredoxin-like protein
Probab=98.69 E-value=1.4e-08 Score=67.60 Aligned_cols=33 Identities=12% Similarity=0.345 Sum_probs=27.4
Q ss_pred EEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
++.|||+||++|+.+.|.|+++. +.+++||.++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~ 34 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDE 34 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCC
Confidence 78999999999999999997652 3577888765
No 91
>PLN02412 probable glutathione peroxidase
Probab=98.68 E-value=2.8e-08 Score=75.91 Aligned_cols=44 Identities=11% Similarity=0.177 Sum_probs=39.6
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+++|||+|||+||++|+...|.+.++.++|++ .++.++.|+++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~--~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE--QGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh--CCcEEEEeccc
Confidence 678999999999999999999999999999986 36889888764
No 92
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.67 E-value=2.6e-08 Score=76.27 Aligned_cols=40 Identities=15% Similarity=0.348 Sum_probs=34.3
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+++++|+|||+||++|+.+.|.++++.+. ++.++.|+.+
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~ 101 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYK 101 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECC
Confidence 689999999999999999999999988753 3777777764
No 93
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.67 E-value=4.8e-08 Score=67.21 Aligned_cols=45 Identities=27% Similarity=0.448 Sum_probs=40.1
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+++++|.||++||++|+...+.+.++.+++++ .++.++.|++|.
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~~v~~d~ 62 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKD--DGVEVVGVNVDD 62 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCC--CCeEEEEEECCC
Confidence 578999999999999999999999999999963 368899998874
No 94
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.66 E-value=2.9e-08 Score=94.69 Aligned_cols=42 Identities=24% Similarity=0.456 Sum_probs=38.0
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEE
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHN 159 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVD 159 (163)
++++|||+|||+||++|+.+.|.+++++++|++ ..+.++.|.
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~--~~~~vvgV~ 460 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD--QPFTVVGVH 460 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC--CCeEEEEEe
Confidence 689999999999999999999999999999976 358888774
No 95
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.66 E-value=2.5e-08 Score=77.58 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=31.0
Q ss_pred EEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
+|.|||+||++|++..|.+.+++++|+ +.++.|++|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D 108 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLD 108 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeC
Confidence 677999999999999999999999984 566666665
No 96
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.64 E-value=2.5e-08 Score=82.67 Aligned_cols=57 Identities=23% Similarity=0.374 Sum_probs=49.4
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCC--CCCEEEEEEEccc
Q 031258 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQ--EAPVIFLKHNVST 162 (163)
Q Consensus 102 t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~--~~~v~f~kVDvde 162 (163)
+.+|++.++. ...+|+|.|||+||+.++.+.|+|++.++.|++. +.++++++||+|.
T Consensus 2 t~~N~~~il~----s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~ 60 (375)
T KOG0912|consen 2 TSENIDSILD----SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDK 60 (375)
T ss_pred ccccHHHhhc----cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccch
Confidence 4578888887 7889999999999999999999999999988642 2589999999974
No 97
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.61 E-value=6.4e-08 Score=65.62 Aligned_cols=42 Identities=29% Similarity=0.479 Sum_probs=38.2
Q ss_pred CCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 117 ~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
+++++++||++||++|+.+.|.+.++++.+.. .+.++.+|+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~ 73 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVD 73 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECC
Confidence 77999999999999999999999999999975 5888888874
No 98
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4.3e-08 Score=83.84 Aligned_cols=54 Identities=30% Similarity=0.464 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 103 ~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
..+|...+.. .+++++|+||||||++|+.+.|.|.++++.+++ .+.++.||+++
T Consensus 36 ~~~~~~~~~~---~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~---~~~~~~vd~~~ 89 (383)
T KOG0191|consen 36 LDSFFDFLLK---DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG---KVKIGAVDCDE 89 (383)
T ss_pred ccccHHHhhc---cCCceEEEEECCCCcchhhhchHHHHHHHHhcC---ceEEEEeCchh
Confidence 3445444442 788999999999999999999999999999987 79999999874
No 99
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.59 E-value=8.5e-08 Score=72.38 Aligned_cols=44 Identities=23% Similarity=0.340 Sum_probs=39.1
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+++++|.|||+||++|+...|.+.++.++|++ .++.++.|+.|
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~--~~~~vi~i~~d 103 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE--KGVEIIAVNVD 103 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc--CCeEEEEEEcC
Confidence 678999999999999999999999999999975 25888888775
No 100
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.54 E-value=8.8e-08 Score=74.50 Aligned_cols=39 Identities=15% Similarity=0.360 Sum_probs=32.8
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEE
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLK 157 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~k 157 (163)
.+++++|.|||+||++|+.+.|.+.++.++++. ++.++.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~---~vv~Is 111 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET---DVVMIS 111 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC---cEEEEe
Confidence 688999999999999999999999999877642 455554
No 101
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.54 E-value=2.4e-07 Score=73.35 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=35.9
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+..+|+.|||+||++|+.+.|.+++++.++. ++.+.++|+++
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~----~i~~~~vD~~~ 174 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND----KILGEMIEANE 174 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC----ceEEEEEeCCC
Confidence 44455666999999999999999999998864 58899999875
No 102
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.53 E-value=1.2e-07 Score=73.27 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=36.5
Q ss_pred CCCE-EEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~-VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+++ ||+.+||+|||+|+...|.+.++.++|++ .++.++.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~--~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS--QGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh--CCcEEEEEecc
Confidence 5665 45566999999999999999999999975 35888888764
No 103
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.50 E-value=1.1e-07 Score=74.12 Aligned_cols=30 Identities=10% Similarity=0.061 Sum_probs=28.2
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHH
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKG 145 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~ 145 (163)
.+|+++|+|||+||++|+..+|.+.+++++
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~ 87 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA 87 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc
Confidence 799999999999999999999999999653
No 104
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.46 E-value=8.7e-08 Score=67.45 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=34.0
Q ss_pred cCCCEEEEEEECCCCccccccHHHHHHH---HHHhCCCCCCEEEEEEEccc
Q 031258 115 ETGSLVVVDFYRTSCGSCKYIEQGFSKL---CKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 115 ~~~k~VvV~FyA~WC~~Ck~~~P~~~~l---a~~~~~~~~~v~f~kVDvde 162 (163)
.++++++|.||+|||++|+.+.+.+.+. ...+++ ++.++.+++++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 50 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD---DFQVIFVNIDD 50 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC---ECEEEECESHS
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc---CeEEEEEecCC
Confidence 4799999999999999999999998864 444433 57888887763
No 105
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.43 E-value=2.5e-07 Score=70.13 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=39.0
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+|.|.++|.|.||||||.+.|.+.++.+...+.+..+.++-|+.|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D 77 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD 77 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence 6899999999999999999999999999999874445666666655
No 106
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.42 E-value=4.2e-07 Score=70.81 Aligned_cols=43 Identities=14% Similarity=0.273 Sum_probs=37.8
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+++|||.|||+||++|++ .|.|+++.++|++ .++.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~--~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWAD--QGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhh--CCeEEEEeecc
Confidence 6899999999999999975 8899999999975 46889888764
No 107
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.41 E-value=5.1e-07 Score=68.58 Aligned_cols=44 Identities=30% Similarity=0.399 Sum_probs=39.4
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.++++||.||++||+.|....|.+.++.++|++ .++.|+.|.+|
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~--~~v~~v~is~d 67 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA--KGVAVVAINSN 67 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh--CCeEEEEEecC
Confidence 678999999999999999999999999999974 36888888775
No 108
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.40 E-value=5.4e-07 Score=65.78 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=38.8
Q ss_pred CCCEEEEEEECCCCcc-ccccHHHHHHHHHHhCCCC-CCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRTSCGS-CKYIEQGFSKLCKGSGDQE-APVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~-Ck~~~P~~~~la~~~~~~~-~~v~f~kVDvd 161 (163)
.++++||.||++||++ |....+.+.++.+++++.. .++.++.|..|
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5789999999999998 9999999999999997621 25888887764
No 109
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.39 E-value=3.5e-07 Score=65.28 Aligned_cols=31 Identities=26% Similarity=0.567 Sum_probs=28.9
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHh
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGS 146 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~ 146 (163)
.+++++|.||++||++|+.+.|.+.++++++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~ 49 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADY 49 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhC
Confidence 5689999999999999999999999998874
No 110
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.38 E-value=6.2e-07 Score=65.87 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=37.7
Q ss_pred CCCEEEEEEECCC-CccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYRTS-CGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA~W-C~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.++++||.||++| |++|+...|.+.++.+++++ +.++.|++|.
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~----~~vi~Is~d~ 68 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN----TVVLTISADL 68 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC----CEEEEEECCC
Confidence 5789999999999 69999999999999999853 7888888763
No 111
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.38 E-value=6e-07 Score=71.03 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=34.3
Q ss_pred CCCEEEEEEEC---CCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYR---TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA---~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+...++.|++ +|||+|+.+.|.++++++.|.. -.+.++++|.|+
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~~~ 65 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDTPE 65 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCCcc
Confidence 34455666888 9999999999999999999953 235677777544
No 112
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.30 E-value=1.2e-06 Score=62.24 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=40.0
Q ss_pred CCCEEEEEEECC-CCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA~-WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.++++||.||++ ||++|+...+.+.++.++|++ .++.++.|..|.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~--~~~~vi~is~d~ 69 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD--KGVQVIGISTDD 69 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT--TTEEEEEEESSS
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhcc--ceEEeeeccccc
Confidence 579999999999 999999999999999999975 368888888764
No 113
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.27 E-value=1.5e-06 Score=66.18 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=37.6
Q ss_pred CCCEEEEEEECCC-CccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYRTS-CGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA~W-C~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.++++||+||++| |++|+...|.+.++++++. ++.++.|..|.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D~ 86 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISADL 86 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCCC
Confidence 6789999999999 9999999999999999984 47788887764
No 114
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.26 E-value=1.5e-06 Score=63.56 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=35.5
Q ss_pred CCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 117 ~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+..||+.||++||++|+...|.+.++.+++.+ .++.++.|..|.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~--~~v~vv~V~~~~ 67 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDA--LGVELVAVGPES 67 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHh--cCeEEEEEeCCC
Confidence 44556656799999999999999999999964 358888887764
No 115
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.21 E-value=2.6e-06 Score=60.68 Aligned_cols=55 Identities=9% Similarity=0.148 Sum_probs=42.9
Q ss_pred HHHHHHHHhhccCCCEEEEEEECCCCccccccHHH-H--HHHHHHhCCCCCCEEEEEEEcc
Q 031258 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-F--SKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 104 ~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~-~--~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+|++++..+..++|+++|+|+++||++|+.|... | +++.+.+.+ +++++++|++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~ 61 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDID 61 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCC
Confidence 36788888887799999999999999999999753 3 344455543 5888888886
No 116
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.19 E-value=2.2e-06 Score=63.12 Aligned_cols=42 Identities=17% Similarity=0.047 Sum_probs=36.1
Q ss_pred CEEEEEEE-CCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 118 SLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 118 k~VvV~Fy-A~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
++++|.|| ++||+.|....|.+.++.+++++ .++.++.|..|
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~--~~v~vi~vs~d 71 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEA--AGAEVLGISVD 71 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh--CCCEEEEecCC
Confidence 78888887 99999999999999999999974 35778887765
No 117
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.17 E-value=2.6e-06 Score=65.03 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=38.0
Q ss_pred CCCEEEEEEE-CCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~Fy-A~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.++++||.|| ++||++|....|.+.+++++|.+ .++.++.|.+|
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~--~~v~vv~Is~d 72 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK--LNAEVLGVSTD 72 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH--CCCEEEEEecC
Confidence 5789999999 89999999999999999999975 35777777665
No 118
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.17 E-value=6.2e-06 Score=56.88 Aligned_cols=43 Identities=12% Similarity=0.184 Sum_probs=38.1
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+...+.-|+++||++|+...+.++++++.+. ++.+..+|+++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~ 53 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGAL 53 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHh
Confidence 56778888999999999999999999999875 48999999875
No 119
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.14 E-value=3.2e-06 Score=65.63 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=37.6
Q ss_pred CCCEEEEEEE-CCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~Fy-A~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.++++||.|| ++||++|....|.+.++.+++++ .++.++.|.+|
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~--~gv~vi~VS~D 74 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKK--LGVEVYSVSTD 74 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh--cCCcEEEEeCC
Confidence 6789999999 99999999999999999999974 25667777665
No 120
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=4e-06 Score=66.82 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=58.7
Q ss_pred CCCCCccceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 89 DDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 89 ~~~~~~~~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+.....+.++.+...+.+++.+... ..+.++|+|+|.|.+.|+...|.+.+|+.+|.. +.+.|.+||+..
T Consensus 118 P~y~gpe~ikyf~~~q~~deel~rn--k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~--~~lkFGkvDiGr 187 (265)
T KOG0914|consen 118 PAYSGPETIKYFTNMQLEDEELDRN--KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN--NLLKFGKVDIGR 187 (265)
T ss_pred cccCCchheeeecchhhHHHHhccC--CceEEEEEEEeecChhhcccccccHHHHHHhCC--CCCcccceeecc
Confidence 3445566777777788888888754 778999999999999999999999999999975 579999999863
No 121
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.08 E-value=5.7e-06 Score=60.08 Aligned_cols=44 Identities=23% Similarity=0.279 Sum_probs=37.7
Q ss_pred CCCEEEEEEE-CCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~Fy-A~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+++++|.|| +.||+.|....|.+.++.++|++ ..+.|+.|..|
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~--~~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK--GGAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 5789999999 78999999999999999999953 35778877765
No 122
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.03 E-value=6.7e-06 Score=59.79 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=37.4
Q ss_pred CCCEEEEEEE-CCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~Fy-A~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+++++|.|| +.||+.|....|.+.++.+++.+ .++.++.|.+|
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~~~vv~is~d 66 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA--LGAVVIGVSPD 66 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH--CCCEEEEEcCC
Confidence 5789999999 58999999999999999999965 35777777665
No 123
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.94 E-value=1.4e-05 Score=48.14 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=31.0
Q ss_pred EEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
++.||++||++|+.+.+.+.++ +... .++.++.+|+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~---~~~~~~~~~~~~ 38 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN---KGVKFEAVDVDE 38 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC---CCcEEEEEEcCC
Confidence 4789999999999999999998 3222 368999998875
No 124
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.92 E-value=1.1e-05 Score=72.00 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=43.6
Q ss_pred ecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHH---HHHHHhCCCCCCEEEEEEEccc
Q 031258 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFS---KLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 99 ~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~---~la~~~~~~~~~v~f~kVDvde 162 (163)
.+.+....++.+.++ ++|+|+|||||+||-.||.+.+..- +...+.. +++..++|+.+
T Consensus 458 ~~s~~~~L~~~la~~--~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~----~~vlLqaDvT~ 518 (569)
T COG4232 458 PISPLAELDQALAEA--KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ----DVVLLQADVTA 518 (569)
T ss_pred ccCCHHHHHHHHHhC--CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC----CeEEEEeeecC
Confidence 334455888988865 5579999999999999999998644 2233333 59999999864
No 125
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.92 E-value=1.3e-05 Score=59.68 Aligned_cols=44 Identities=23% Similarity=0.297 Sum_probs=37.4
Q ss_pred CCCEEEEEEECC-CCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~-WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.++++||.||+. ||+.|....+.+.++.+++++ .++.++.|..|
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~--~~v~vi~Is~d 73 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK--AGVVVLGISTD 73 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH--CCCEEEEEcCC
Confidence 678999999986 678899999999999999975 35888888765
No 126
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.82 E-value=3.1e-05 Score=60.42 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=39.3
Q ss_pred CCCEEEEEEE-CCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~Fy-A~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+++|||.|| +.||+.|....+.+.++.+++.+ .++.++.|.+|.
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~--~g~~vigIS~D~ 75 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQK--LGVDVYSVSTDT 75 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh--CCCEEEEEeCCC
Confidence 6789999999 99999999999999999999975 357788887764
No 127
>smart00594 UAS UAS domain.
Probab=97.80 E-value=3.1e-05 Score=56.07 Aligned_cols=56 Identities=9% Similarity=0.099 Sum_probs=42.6
Q ss_pred HHHHHHHHhhccCCCEEEEEEECCCCccccccHHHH---HHHHHHhCCCCCCEEEEEEEccc
Q 031258 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 104 ~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~---~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+|++++..+...+|+++|+|+++||+.|+.|.... .++.+.+.. ++++..+|++.
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~ 72 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDT 72 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCC
Confidence 478888888777899999999999999999988531 233344433 58888888763
No 128
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.74 E-value=2.2e-05 Score=52.10 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=28.1
Q ss_pred EEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
|+.|+++||++|+.+.+.++++. +.+ .+.++.||.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~ 36 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQL 36 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCC
Confidence 46799999999999999999877 322 3667777654
No 129
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.74 E-value=0.00012 Score=53.41 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECC-------CCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRT-------SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~-------WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
..-++|.+.+.....++++++|.|+++ |||.|+...|.+++.-+...+ +..|+.|.+.
T Consensus 3 ~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG 67 (119)
T PF06110_consen 3 RGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVG 67 (119)
T ss_dssp ECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE--
T ss_pred cCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcC
Confidence 346788888887555788999999965 999999999999998887554 6788877663
No 130
>PRK15000 peroxidase; Provisional
Probab=97.72 E-value=5.4e-05 Score=59.58 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=39.0
Q ss_pred CCCEEEEEEECC-CCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA~-WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.++++||.||+. ||+.|....|.|.+++++|++ .++.++.|.+|.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~--~g~~vigvS~D~ 78 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK--RGVEVVGVSFDS 78 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCC
Confidence 578999999995 999999999999999999975 357788887763
No 131
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.00015 Score=52.77 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=46.5
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEEC--------CCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 102 TDAEFFKILEKSKETGSLVVVDFYR--------TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 102 t~~~f~~~l~~s~~~~k~VvV~FyA--------~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
..+.|++.+.+.. +++-++|.|++ +|||.|.+-.|.+.+.-+.... ++.|+.|++.+
T Consensus 11 g~e~~~~~~~~~~-n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~---~~~~v~v~VG~ 75 (128)
T KOG3425|consen 11 GYESFEETLKNVE-NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE---DVHFVHVYVGN 75 (128)
T ss_pred hHHHHHHHHHHHh-CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC---ceEEEEEEecC
Confidence 3578888887764 55569999997 6999999999999998886655 79999998864
No 132
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.66 E-value=6.1e-05 Score=59.25 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=36.4
Q ss_pred CCCEEEE-EEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVV-DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV-~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+++++| .||++||+.|....+.+.++.+++++ .++.++.|.+|.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~--~~~~vi~vS~D~ 71 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK--LGVELVGLSVDS 71 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCC
Confidence 4666655 68999999999999999999999975 357777777763
No 133
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.66 E-value=5.3e-05 Score=48.45 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=25.5
Q ss_pred EEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+..||++||++|+.+.+.+++. ++.+..+|+++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~ 34 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---------GIAFEEIDVEK 34 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---------CCeEEEEeccC
Confidence 4569999999999999888652 36677777764
No 134
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.61 E-value=4.6e-05 Score=58.33 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCCccccccHHH-H--HHHHHHhCCCCCCEEEEEEEccc
Q 031258 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-F--SKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 103 ~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~-~--~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+.|+.+-. .+|+|+|+++++||++|+.|.-. | .++++.+.. .++-++||.|+
T Consensus 27 ~ea~~~Ak~----e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~---~FI~VkvDree 82 (163)
T PF03190_consen 27 EEALEKAKK----ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR---NFIPVKVDREE 82 (163)
T ss_dssp HHHHHHHHH----HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH---H-EEEEEETTT
T ss_pred HHHHHHHHh----cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC---CEEEEEecccc
Confidence 456666654 89999999999999999998852 2 334444432 68999999986
No 135
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.52 E-value=0.00012 Score=58.37 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=37.7
Q ss_pred CCCE-EEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~-VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+++ ||+.|||+||+.|....+.+.++.++|++ .++.++.|.+|.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~--~gv~vigIS~D~ 72 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKE--LNTELIGLSVDQ 72 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH--CCCEEEEEeCCC
Confidence 4555 57899999999999999999999999965 357888888774
No 136
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.49 E-value=4.1e-05 Score=49.88 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=20.9
Q ss_pred EEEEECCCCccccccHHHHHHHHHH
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKG 145 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~ 145 (163)
++-||++||++|+.+.+.+.++...
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~ 26 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAA 26 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCc
Confidence 5679999999999999998776543
No 137
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.48 E-value=0.00011 Score=49.72 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=32.1
Q ss_pred EEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
|+.|+.+||++|+.....++++..++.+ +.+..+|+++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~----i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDD----FDYRYVDIHA 40 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccC----CcEEEEECCC
Confidence 6679999999999999999999987643 7777888763
No 138
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.48 E-value=0.00018 Score=59.04 Aligned_cols=45 Identities=24% Similarity=0.194 Sum_probs=37.2
Q ss_pred CCCEEEEEEE-CCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~Fy-A~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.++++|+.|| +.||++|....|.|.++.++|++ .++.++.|.+|.
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~--~gv~VigIS~Ds 142 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEE--RGVKVLGVSVDS 142 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCC
Confidence 4667888887 99999999999999999999975 357777777764
No 139
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.47 E-value=0.00014 Score=57.95 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=36.7
Q ss_pred CCCEEE-EEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVV-VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~Vv-V~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.++++| +.||++||+.|....+.|.++++++++ .++.++.|.+|.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~--~g~~VigvS~Ds 77 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK--LNTELIGLSVDS 77 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH--CCCEEEEEECCC
Confidence 456555 589999999999999999999999975 257788887764
No 140
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.46 E-value=0.00015 Score=56.95 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=35.3
Q ss_pred EEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 119 ~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+|+.|||+||+.|....+.+.++++++++ .++.++.|.+|.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~--~gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKK--RNVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHH--cCCEEEEEECCC
Confidence 456689999999999999999999999975 357788877764
No 141
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=6.3e-05 Score=60.05 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=46.7
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 97 v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+..+...+.| ... ..+.+++.|||+||.+|++|...++.+++..+ ++.|++++.++
T Consensus 3 v~~i~~~~~f--~~~----~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~~a~~ 58 (227)
T KOG0911|consen 3 VQFIVFQEQF--LDQ----KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKLEAEE 58 (227)
T ss_pred ceeehhHHHH--HHh----ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeeehhhh
Confidence 4455667778 333 78899999999999999999999999999884 48999998875
No 142
>PRK13189 peroxiredoxin; Provisional
Probab=97.32 E-value=0.00029 Score=56.28 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=36.2
Q ss_pred CCC-EEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGS-LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k-~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.++ .||+.||++||+.|....+.|.++++++++ .++.++.|.+|.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~--~~v~VigvS~D~ 79 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE--LNTELIGLSIDQ 79 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH--cCCEEEEEECCC
Confidence 456 455688999999999999999999999975 357777777764
No 143
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.28 E-value=0.00043 Score=54.09 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=37.9
Q ss_pred CCCEEEEEEEC-CCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYR-TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA-~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+++++|.||+ .||++|....+.+.++.++|.+ .++.++.|++|.
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~--~g~~vv~IS~d~ 80 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE--LNCEVLACSMDS 80 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH--cCCEEEEEeCCC
Confidence 57899999995 8899999999999999999975 357777777763
No 144
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.22 E-value=0.00072 Score=55.60 Aligned_cols=62 Identities=26% Similarity=0.424 Sum_probs=49.0
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 96 ~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.|.++.+++.|-+++... ..+..|||.||-+-++.|..|...|..||.+|.. +.|++|.++.
T Consensus 126 ~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~ 187 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASK 187 (265)
T ss_dssp SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECG
T ss_pred eEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhc
Confidence 467777888999988654 2466899999999999999999999999999986 9999998754
No 145
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.14 E-value=0.0001 Score=59.30 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=44.4
Q ss_pred ecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 99 ~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
...+.+|+...+. + -.++.|+||||+.|+.+.|.|+.++.--.| -.|.+++||+.
T Consensus 27 ~~~~eenw~~~l~-----g-ewmi~~~ap~~psc~~~~~~~~~~a~~s~d--L~v~va~VDvt 81 (248)
T KOG0913|consen 27 TRIDEENWKELLT-----G-EWMIEFGAPWCPSCSDLIPHLENFATVSLD--LGVKVAKVDVT 81 (248)
T ss_pred EEecccchhhhhc-----h-HHHHHhcCCCCccccchHHHHhccCCccCC--CceeEEEEEEE
Confidence 3356789988884 2 457789999999999999999999876554 46899999975
No 146
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.12 E-value=0.0032 Score=46.54 Aligned_cols=61 Identities=10% Similarity=0.157 Sum_probs=51.4
Q ss_pred eecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcccC
Q 031258 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163 (163)
Q Consensus 98 ~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde~ 163 (163)
..+.+.-..++++... .++.|++-|.-+|-+.|.+|...+.+.+++.+. -.+++-||++++
T Consensus 3 ~~L~s~~~VDqAI~~e--~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~---~a~IY~vDi~~V 63 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSE--EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN---FAVIYLVDIDEV 63 (133)
T ss_dssp EEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT---TEEEEEEETTTT
T ss_pred cccCccchHHHHHhcc--CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc---ceEEEEEEcccc
Confidence 3556778888888765 899999999999999999999999999999986 588999999874
No 147
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.11 E-value=0.0011 Score=52.87 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=37.7
Q ss_pred HHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 108 KILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 108 ~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
+++... .++.-|+.||.+.|+.|+.+.|++..++++|+ +.+..|++|
T Consensus 113 ~~l~~l--a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-----~~v~~vs~D 159 (215)
T PF13728_consen 113 KALKQL--AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG-----FSVIPVSLD 159 (215)
T ss_pred HHHHHH--hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-----CEEEEEecC
Confidence 444443 57788999999999999999999999999995 555555554
No 148
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.88 E-value=0.0022 Score=47.12 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=24.4
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCC
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~ 148 (163)
..+..++-|..+|||.|++..|.+.++++..++
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~ 72 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPN 72 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC
Confidence 566788889999999999999999999998643
No 149
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.0038 Score=45.94 Aligned_cols=61 Identities=13% Similarity=0.218 Sum_probs=52.1
Q ss_pred eecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcccC
Q 031258 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163 (163)
Q Consensus 98 ~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde~ 163 (163)
..+.+....++++... ..+.|||-|.-.|-+.|.+|...+.+.++.... -..++-+|+|++
T Consensus 6 p~L~s~~~VdqaI~~t--~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn---fa~IylvdideV 66 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILST--EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN---FAVIYLVDIDEV 66 (142)
T ss_pred cccccHHHHHHHHhcc--cceEEEEEecCCCCchHhhHHHHHHHHHHHHhh---ceEEEEEecchh
Confidence 3456777888888765 889999999999999999999999999999876 477888898864
No 150
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.81 E-value=0.0012 Score=44.84 Aligned_cols=37 Identities=30% Similarity=0.331 Sum_probs=29.0
Q ss_pred EEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
|+.|..+|||+|+.....|+++..++.+ +.+..+|++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~----i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD----FEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC----CcEEEEECC
Confidence 5679999999999999999888765433 666667765
No 151
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.80 E-value=0.0011 Score=43.74 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.1
Q ss_pred EEEEECCCCccccccHHHHHHHHHHh
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKGS 146 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~~ 146 (163)
|+.|+++|||+|+.+.+.++++...|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~ 27 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKP 27 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCc
Confidence 46799999999999999999876643
No 152
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.80 E-value=0.0014 Score=41.59 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=18.1
Q ss_pred EEEEECCCCccccccHHHHHH
Q 031258 121 VVDFYRTSCGSCKYIEQGFSK 141 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~ 141 (163)
++.|+++||++|+.+...+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~ 22 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE 22 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH
Confidence 567999999999998887775
No 153
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.60 E-value=0.0036 Score=47.00 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=33.8
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEE
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKH 158 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kV 158 (163)
.+++.|+.|+...||+|+.+.+.+.++.+++++ ++.|..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~---~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK---DVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC---CceEEEc
Confidence 467899999999999999999999999999865 5555443
No 154
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.54 E-value=0.0046 Score=50.45 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=32.2
Q ss_pred HHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhC
Q 031258 108 KILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSG 147 (163)
Q Consensus 108 ~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~ 147 (163)
+++... .++.-|+.||.+-|+.|+++.|++..++++|+
T Consensus 136 ~~i~~l--a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg 173 (248)
T PRK13703 136 QAIAKL--AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG 173 (248)
T ss_pred HHHHHH--HhcceEEEEECCCCchhHHHHHHHHHHHHHhC
Confidence 344443 46688999999999999999999999999996
No 155
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.54 E-value=0.0051 Score=50.42 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=37.0
Q ss_pred HHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 108 KILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 108 ~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
+++... .++.-++.||.+-|+.|+++.|++..++++|+ +.+..|++|
T Consensus 143 ~~i~~l--a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-----i~v~~VS~D 189 (256)
T TIGR02739 143 KAIQQL--SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-----ISVIPISVD 189 (256)
T ss_pred HHHHHH--HhceeEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecC
Confidence 444443 56688999999999999999999999999996 455555554
No 156
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.54 E-value=0.0005 Score=49.19 Aligned_cols=45 Identities=2% Similarity=-0.150 Sum_probs=36.2
Q ss_pred CcCCcc---cCCcccEEEecccccccchhhhcccccCCCCCCcccccccc
Q 031258 16 RNADGK---FSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTGLAS 62 (163)
Q Consensus 16 ~~~~~~---~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~ 62 (163)
+..|++ |||||+||++|.+.... +..+| |++....|..++.+++-
T Consensus 37 ~~vAk~~~~~kgki~Fv~~d~~~~~~-~~~~f-gl~~~~~P~i~i~~~~~ 84 (111)
T cd03072 37 QAVARQLISEKGAINFLTADGDKFRH-PLLHL-GKTPADLPVIAIDSFRH 84 (111)
T ss_pred HHHHHHHHhcCceEEEEEEechHhhh-HHHHc-CCCHhHCCEEEEEcchh
Confidence 457888 99999999999996543 77777 88877889888887654
No 157
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.40 E-value=0.015 Score=45.80 Aligned_cols=59 Identities=25% Similarity=0.448 Sum_probs=51.9
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 96 ~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
...++.+..+|-+.+. ....||+.||-|--..|+-|...++.|++.+-+ ..|++||++.
T Consensus 67 ~y~ev~~Ekdf~~~~~----kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~ 125 (211)
T KOG1672|consen 67 EYEEVASEKDFFEEVK----KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEK 125 (211)
T ss_pred eEEEeccHHHHHHHhh----cCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEeccc
Confidence 4667788888888887 677899999999999999999999999999976 8899999874
No 158
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.34 E-value=0.0098 Score=43.82 Aligned_cols=44 Identities=25% Similarity=0.442 Sum_probs=36.2
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDv 160 (163)
..+++|+.|+..-||+|+.+.+.+.++.++|-+ ..++.|...++
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~-~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYID-PGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccC-CCceEEEEEEc
Confidence 678999999999999999999999999999932 23788877765
No 159
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.26 E-value=0.0037 Score=39.33 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=19.5
Q ss_pred EEEEECCCCccccccHHHHHHHH
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLC 143 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la 143 (163)
++-|+++||++|+...+.+.+..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~ 24 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG 24 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC
Confidence 45699999999999998888654
No 160
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.00 E-value=0.0017 Score=46.56 Aligned_cols=43 Identities=7% Similarity=-0.190 Sum_probs=33.9
Q ss_pred CcCCcccC-CcccEEEecccccccchhhhcccccCCC--CCCcccccc
Q 031258 16 RNADGKFS-SKVPCMVTSLHRDRTCAKSFCMRTRNRI--PFESKSTGL 60 (163)
Q Consensus 16 ~~~~~~~~-~~i~~v~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~l 60 (163)
+++|++|| |||+||++|.+... ++..+| |++... .|.+++..+
T Consensus 41 ~~vAk~fk~gki~Fv~~D~~~~~-~~l~~f-gl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 41 LKVAKDFPDRKLNFAVADKEDFS-HELEEF-GLDFSGGEKPVVAIRTA 86 (111)
T ss_pred HHHHHHCcCCeEEEEEEcHHHHH-HHHHHc-CCCcccCCCCEEEEEeC
Confidence 46899999 79999999999654 367777 887655 888777664
No 161
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=95.99 E-value=0.0088 Score=43.15 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=39.0
Q ss_pred HHHHHHHhhccCCCEEEEEEECC----CCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 105 EFFKILEKSKETGSLVVVDFYRT----SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 105 ~f~~~l~~s~~~~k~VvV~FyA~----WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.|++++..++++.|.++|++|++ ||..|+.... =+++.+-... ++++...|++.
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~---~fv~w~~dv~~ 62 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINT---RMLFWACSVAK 62 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHc---CEEEEEEecCC
Confidence 57777777778999999999999 9999976541 1222333322 58888888863
No 162
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.96 E-value=0.012 Score=38.92 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=28.4
Q ss_pred EEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEE
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHN 159 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVD 159 (163)
|+.|+.++||+|..+.+.+.++.+.+.+ ++.+..+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~ 36 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRP 36 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEec
Confidence 4679999999999999999999865554 56665543
No 163
>PHA03050 glutaredoxin; Provisional
Probab=95.87 E-value=0.0064 Score=43.34 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.0
Q ss_pred EEEEECCCCccccccHHHHHHHHH
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCK 144 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~ 144 (163)
|+-|..+|||+|+.....|+++.-
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i 38 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSF 38 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCC
Confidence 445999999999999888877654
No 164
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.014 Score=53.39 Aligned_cols=53 Identities=11% Similarity=0.212 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCCccccccHHH---HHHHHHHhCCCCCCEEEEEEEccc
Q 031258 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG---FSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 103 ~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~---~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+.|+++-. .+|||+|....+||.+|+-|... =.++++-+.+ .++-+|||.||
T Consensus 33 ~eAf~~A~~----edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~---~FV~IKVDREE 88 (667)
T COG1331 33 EEAFAKAKE----EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE---NFVPVKVDREE 88 (667)
T ss_pred HHHHHHHHH----hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh---CceeeeEChhh
Confidence 578888776 89999999999999999998852 2345555543 69999999986
No 165
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=95.47 E-value=0.017 Score=45.34 Aligned_cols=41 Identities=22% Similarity=0.390 Sum_probs=32.5
Q ss_pred CCEEEEEEECCCCccccccHHHH---HHHHHHhCCCCCCEEEEEEEc
Q 031258 117 GSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNV 160 (163)
Q Consensus 117 ~k~VvV~FyA~WC~~Ck~~~P~~---~~la~~~~~~~~~v~f~kVDv 160 (163)
+++.||+|+.--||||+.+.|.+ +.+.+.+++ ++.|+.+.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~---~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE---GTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC---CCeEEEecc
Confidence 45779999999999999999876 788888875 455555443
No 166
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.42 E-value=0.016 Score=36.14 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=24.0
Q ss_pred EEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
|+.|+.+||++|+.....|++. ++.+-.+|+++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~---------~i~y~~~dv~~ 33 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK---------GIPYEEVDVDE 33 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT---------TBEEEEEEGGG
T ss_pred cEEEEcCCCcCHHHHHHHHHHc---------CCeeeEccccc
Confidence 4679999999999988777432 25566666653
No 167
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.41 E-value=0.067 Score=38.12 Aligned_cols=58 Identities=22% Similarity=0.243 Sum_probs=41.9
Q ss_pred ecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 99 ~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+.+.++|++++..+ ..++++|.=.+++||-.++....|++..+...+ .+.++.+|+-
T Consensus 3 ~L~t~eql~~i~~~S--~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~---~~~~y~l~v~ 60 (105)
T PF11009_consen 3 PLTTEEQLEEILEES--KEKPVLIFKHSTRCPISAMALREFEKFWEESPD---EIPVYYLDVI 60 (105)
T ss_dssp E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGG
T ss_pred ccCCHHHHHHHHHhc--ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc---cceEEEEEEE
Confidence 467889999999986 799999999999999999999999999888765 4888888874
No 168
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=95.24 E-value=0.0068 Score=44.53 Aligned_cols=63 Identities=8% Similarity=0.016 Sum_probs=43.3
Q ss_pred CcCCcccCCc-ccEEEecccccccchhhhcccccCCCCCCcccccccccc---cCcccccccchhhhhh
Q 031258 16 RNADGKFSSK-VPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTGLASLK---SNHNLRHGKVKGLIDA 80 (163)
Q Consensus 16 ~~~~~~~~~~-i~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~---~~~~~~~~~~~~~~~~ 80 (163)
+++|++|||| +.|+++|...... ..+.| |++....|.+.+.+++-.+ ....+....+..++..
T Consensus 47 ~~vAk~~kgk~i~Fv~vd~~~~~~-~~~~f-gl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~ 113 (130)
T cd02983 47 KSVAEKFKKKPWGWLWTEAGAQLD-LEEAL-NIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRE 113 (130)
T ss_pred HHHHHHhcCCcEEEEEEeCcccHH-HHHHc-CCCccCCCEEEEEecccCccccccCccCHHHHHHHHHH
Confidence 5789999999 9999999996543 67777 8777778877776654321 2234455555555554
No 169
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.83 E-value=0.026 Score=37.45 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=19.7
Q ss_pred CEEEEEEECCCCccccccHHHHHHH
Q 031258 118 SLVVVDFYRTSCGSCKYIEQGFSKL 142 (163)
Q Consensus 118 k~VvV~FyA~WC~~Ck~~~P~~~~l 142 (163)
+.-|+-|+.+||++|+.....|++.
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~ 31 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK 31 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc
Confidence 3445569999999999998888643
No 170
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=94.67 E-value=0.051 Score=37.78 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=18.8
Q ss_pred CCEEEEEEE----CCCCccccccHHHHHHHH
Q 031258 117 GSLVVVDFY----RTSCGSCKYIEQGFSKLC 143 (163)
Q Consensus 117 ~k~VvV~Fy----A~WC~~Ck~~~P~~~~la 143 (163)
...|+|.-. +||||+|+.....|.++.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~ 41 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACG 41 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcC
Confidence 445555443 399999999887777643
No 171
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.44 E-value=0.049 Score=36.61 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=24.2
Q ss_pred EEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
+..|..+||++|++..-.|++. ++.|-.+|+++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~---------gI~~~~idi~~ 35 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR---------GFDFEMINVDR 35 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC---------CCceEEEECCC
Confidence 4568899999999988777541 36666777763
No 172
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.26 E-value=0.058 Score=34.77 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=17.7
Q ss_pred EEEEECCCCccccccHHHHHH
Q 031258 121 VVDFYRTSCGSCKYIEQGFSK 141 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~ 141 (163)
++.|+.+||++|+.....|++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~ 22 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK 22 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456899999999998887765
No 173
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=94.08 E-value=0.1 Score=40.44 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=23.7
Q ss_pred CCCEEEEEEECCCCccccccHHHHHH
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSK 141 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~ 141 (163)
.++.+++.|..+.||+|+.+.+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 56899999999999999999998877
No 174
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.02 E-value=0.069 Score=34.59 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=17.7
Q ss_pred EEEEECCCCccccccHHHHHH
Q 031258 121 VVDFYRTSCGSCKYIEQGFSK 141 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~ 141 (163)
++-|+.+||+.|+...-.|++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~ 23 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE 23 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH
Confidence 456899999999998877775
No 175
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.69 E-value=0.03 Score=39.10 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=18.4
Q ss_pred EEEEECCCCccccccHHHHHHHH
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLC 143 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la 143 (163)
|+-|..||||+|+.....|.++.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~ 32 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG 32 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC
Confidence 34499999999999888777653
No 176
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=93.25 E-value=0.25 Score=39.36 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=47.3
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEc
Q 031258 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (163)
Q Consensus 97 v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDv 160 (163)
|..|. ..+|-+-+..+ ..+-+|||..|..--+.|+.+...++.|+-+|+. ++|+++-.
T Consensus 93 V~~IS-g~dyv~EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~a 150 (240)
T KOG3170|consen 93 VFPIS-GPDYVKEVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIPA 150 (240)
T ss_pred eeecc-chHHHHHHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEeccc
Confidence 55654 55666555554 2788999999999999999999999999999986 88988743
No 177
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=93.14 E-value=0.45 Score=32.02 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=40.3
Q ss_pred eecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEE
Q 031258 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHN 159 (163)
Q Consensus 98 ~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVD 159 (163)
..+.+.+.++..+. ..+++||-|+.++|+ .+...|.++|+.+++ .+.|+.+.
T Consensus 2 ~~i~s~~~l~~~~~----~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~---~~~F~~~~ 53 (97)
T cd02981 2 KELTSKEELEKFLD----KDDVVVVGFFKDEES---EEYKTFEKVAESLRD---DYGFGHTS 53 (97)
T ss_pred eecCCHHHHHHHhc----cCCeEEEEEECCCCc---HHHHHHHHHHHhccc---CCeEEEEC
Confidence 34566777777775 788999999999988 467789999999875 47776654
No 178
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=93.01 E-value=0.036 Score=36.41 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=18.0
Q ss_pred EEEECCCCccccccHHHHHHH
Q 031258 122 VDFYRTSCGSCKYIEQGFSKL 142 (163)
Q Consensus 122 V~FyA~WC~~Ck~~~P~~~~l 142 (163)
+.|+.+||++|+.....|++.
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~ 22 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK 22 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc
Confidence 468899999999999888764
No 179
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=92.98 E-value=0.2 Score=37.52 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=32.4
Q ss_pred CCCEEEEEEECCCCcccccc-HHHHHHHHHHhCCCCCCE-EEEEEEcc
Q 031258 116 TGSLVVVDFYRTSCGSCKYI-EQGFSKLCKGSGDQEAPV-IFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~-~P~~~~la~~~~~~~~~v-~f~kVDvd 161 (163)
.+..||+.|.+.||+.|... .+.|.+..+++.+. .+ .++.|..|
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~--g~~~V~~iS~D 74 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK--GVDEVICVSVN 74 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC--CCCEEEEEECC
Confidence 34566666669999999998 99999999999642 34 35666554
No 180
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=92.68 E-value=0.12 Score=33.45 Aligned_cols=20 Identities=15% Similarity=0.556 Sum_probs=16.9
Q ss_pred EEEECCCCccccccHHHHHH
Q 031258 122 VDFYRTSCGSCKYIEQGFSK 141 (163)
Q Consensus 122 V~FyA~WC~~Ck~~~P~~~~ 141 (163)
..|..+||++|+.....|++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~ 21 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE 21 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 45888999999999888875
No 181
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.50 E-value=0.15 Score=32.81 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=17.7
Q ss_pred EEEEECCCCccccccHHHHHH
Q 031258 121 VVDFYRTSCGSCKYIEQGFSK 141 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~ 141 (163)
++.|..+||+.|+.....|++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~ 23 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE 23 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 556999999999998877775
No 182
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.34 E-value=0.28 Score=34.84 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=28.3
Q ss_pred HHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 105 ~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
...+++. ..+||| |.-+||+.|+.+...|.+ ++. ...++.+|-+
T Consensus 6 ~v~~~i~-----~~~VVi-fSKs~C~~c~~~k~ll~~----~~v---~~~vvELD~~ 49 (104)
T KOG1752|consen 6 KVRKMIS-----ENPVVI-FSKSSCPYCHRAKELLSD----LGV---NPKVVELDED 49 (104)
T ss_pred HHHHHhh-----cCCEEE-EECCcCchHHHHHHHHHh----CCC---CCEEEEccCC
Confidence 3455553 345444 999999999997766666 332 4566666644
No 183
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=92.10 E-value=0.38 Score=31.53 Aligned_cols=26 Identities=15% Similarity=0.411 Sum_probs=22.2
Q ss_pred EEEECCCCccccccHHHHHHHHHHhC
Q 031258 122 VDFYRTSCGSCKYIEQGFSKLCKGSG 147 (163)
Q Consensus 122 V~FyA~WC~~Ck~~~P~~~~la~~~~ 147 (163)
|.+++++|+.|..+...++++.+.++
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~ 28 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG 28 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC
Confidence 34478889999999999999999883
No 184
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=90.87 E-value=0.13 Score=34.94 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=18.7
Q ss_pred CCEEEEEEE----CCCCccccccHHHHHHHH
Q 031258 117 GSLVVVDFY----RTSCGSCKYIEQGFSKLC 143 (163)
Q Consensus 117 ~k~VvV~Fy----A~WC~~Ck~~~P~~~~la 143 (163)
+.+|+|.-. +|||++|+.....|++..
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~ 37 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG 37 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC
Confidence 445555433 279999999887777654
No 185
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=90.43 E-value=0.27 Score=39.48 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=25.6
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHH
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCK 144 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~ 144 (163)
+++.+|+.|.-+-||.|+.+.+.+.++.+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~ 134 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA 134 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc
Confidence 67889999999999999999998887754
No 186
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=90.22 E-value=0.23 Score=40.29 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=44.4
Q ss_pred CCccceeecCCHH--HHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEc
Q 031258 92 CPVECVREFKTDA--EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (163)
Q Consensus 92 ~~~~~v~~i~t~~--~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDv 160 (163)
.|..+|+.+.... ++-+..+ .++|+||+|.+-.||+-+.-.+.+++++++|.+ .+.|+-|=+
T Consensus 79 APns~vv~l~g~~~~~ildf~~----g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d---~adFl~VYI 142 (237)
T PF00837_consen 79 APNSPVVTLDGQRSCRILDFAK----GNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD---VADFLIVYI 142 (237)
T ss_pred CCCCceEeeCCCcceeHHHhcc----CCCCeEEEcccccchHHHHHHHHHHHHHHHhhh---hhheehhhH
Confidence 3455666644322 2333343 899999999999999999999999999999987 344554433
No 187
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=89.93 E-value=0.7 Score=34.45 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHhhccCCCE-EEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 100 FKTDAEFFKILEKSKETGSL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 100 i~t~~~f~~~l~~s~~~~k~-VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
..|.+++..+.. .+.+ +++.|+..-......+...+.++++++++ ++.|+.+|.+.
T Consensus 81 ~~t~~n~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~~f~~~d~~~ 137 (184)
T PF13848_consen 81 ELTPENFEKLFS----SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG---KINFVYVDADD 137 (184)
T ss_dssp EESTTHHHHHHS----TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT---TSEEEEEETTT
T ss_pred ccchhhHHHHhc----CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC---eEEEEEeehHH
Confidence 356789999886 5555 78888777788888999999999999987 79999999873
No 188
>PRK10824 glutaredoxin-4; Provisional
Probab=89.18 E-value=0.26 Score=35.59 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=19.4
Q ss_pred CCEEEEEEEC----CCCccccccHHHHHHHHH
Q 031258 117 GSLVVVDFYR----TSCGSCKYIEQGFSKLCK 144 (163)
Q Consensus 117 ~k~VvV~FyA----~WC~~Ck~~~P~~~~la~ 144 (163)
..+|+|.-.. ||||.|+.....|.++..
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i 45 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGE 45 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCC
Confidence 4455553333 699999999888877643
No 189
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=88.85 E-value=0.89 Score=36.93 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=25.6
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHH
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKG 145 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~ 145 (163)
..+.+|+.|.-+-||+|+.+.+.+.++.+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~ 145 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS 145 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc
Confidence 567889999999999999999888776553
No 190
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=88.73 E-value=0.75 Score=35.06 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=37.6
Q ss_pred CCCEEEEEEE-CCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~Fy-A~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+++||++|| ..|++.|-..+-.|++...++.. .++.++.|..|.
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~--~~a~V~GIS~Ds 74 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK--LGAVVLGISPDS 74 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh--CCCEEEEEeCCC
Confidence 7889999999 78999999999999999999975 257777776663
No 191
>PTZ00062 glutaredoxin; Provisional
Probab=88.72 E-value=0.69 Score=36.63 Aligned_cols=26 Identities=4% Similarity=-0.003 Sum_probs=17.8
Q ss_pred CCEEEEEEE----CCCCccccccHHHHHHH
Q 031258 117 GSLVVVDFY----RTSCGSCKYIEQGFSKL 142 (163)
Q Consensus 117 ~k~VvV~Fy----A~WC~~Ck~~~P~~~~l 142 (163)
..+|+|.-. +||||.|++....|++.
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~ 141 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSS 141 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHc
Confidence 445555333 47999999988777754
No 192
>PRK10638 glutaredoxin 3; Provisional
Probab=88.00 E-value=0.25 Score=32.79 Aligned_cols=22 Identities=14% Similarity=0.301 Sum_probs=17.9
Q ss_pred EEEEECCCCccccccHHHHHHH
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKL 142 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~l 142 (163)
++.|..+||++|+...-.+++.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~ 25 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK 25 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 4568889999999988877764
No 193
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=87.85 E-value=1.9 Score=38.77 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=32.0
Q ss_pred CCEE-EEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 117 GSLV-VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 117 ~k~V-vV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
++++ +--|.++||+.|......+.+++...++ +..-.||+.+
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~----i~~~~i~~~~ 517 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN----VEAEMIDVSH 517 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC----ceEEEEECcc
Confidence 4455 4456899999999999999999988653 6666667654
No 194
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=87.82 E-value=0.55 Score=31.40 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=17.8
Q ss_pred EEEEECCCCccccccHHHHHHH
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKL 142 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~l 142 (163)
++.|.-+|||+|+.....|++.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~ 24 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK 24 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc
Confidence 5568999999999988777743
No 195
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=87.57 E-value=2 Score=38.25 Aligned_cols=43 Identities=12% Similarity=0.204 Sum_probs=34.6
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+..-+-.|++++|++|......+.+++...+ .+.+-.||..+
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~----~i~~~~id~~~ 157 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP----NITHTMIDGAL 157 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC----CceEEEEEchh
Confidence 34556888999999999999999999998754 48887777654
No 196
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=86.22 E-value=0.18 Score=34.21 Aligned_cols=40 Identities=10% Similarity=-0.005 Sum_probs=28.7
Q ss_pred CcCCcccCCcccEEEecccccccchhhhcccccCCCCCCccc
Q 031258 16 RNADGKFSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKS 57 (163)
Q Consensus 16 ~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 57 (163)
+++|++|+|++.|+.+|.+... +....+ +++....|+.-+
T Consensus 35 ~~vA~~~~~~v~f~~vd~~~~~-~~~~~~-~i~~~~~P~~~~ 74 (103)
T cd02982 35 KEVAKKFKGKLLFVVVDADDFG-RHLEYF-GLKEEDLPVIAI 74 (103)
T ss_pred HHHHHHhCCeEEEEEEchHhhH-HHHHHc-CCChhhCCEEEE
Confidence 5689999999999999999754 345545 665446665443
No 197
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=85.39 E-value=1.7 Score=33.14 Aligned_cols=46 Identities=30% Similarity=0.408 Sum_probs=33.4
Q ss_pred CCCEEEEEEECCCC-ccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRTSC-GSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC-~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+++++|.|.=+-| ..|-.+...+.++.+.+++...++.++.|.+|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 78999999999989 56887777778777777543346766666655
No 198
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=84.77 E-value=4.1 Score=30.14 Aligned_cols=54 Identities=9% Similarity=-0.068 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhccCCCEEEEEEEC--CCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 103 DAEFFKILEKSKETGSLVVVDFYR--TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 103 ~~~f~~~l~~s~~~~k~VvV~FyA--~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
..+++..+. .....+|.|-. --++.+-..+=++++++++|.+ .++.|++||+|+
T Consensus 24 ~~~~~~~~~----~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~~v~~akVDiD~ 79 (132)
T PRK11509 24 ESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--YTWQVAIADLEQ 79 (132)
T ss_pred cccHHHHHh----CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--CceEEEEEECCC
Confidence 456677675 44445554432 3567778888899999999974 259999999986
No 199
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=84.32 E-value=2.6 Score=34.04 Aligned_cols=60 Identities=22% Similarity=0.363 Sum_probs=51.1
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEc
Q 031258 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (163)
Q Consensus 96 ~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDv 160 (163)
.|.++.+.+.|-+.+.... ..-.++|..|-+--..|-+|...+.=|+.+|+. +.|.+|-.
T Consensus 139 ~V~El~~gkqfld~idke~-ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~----vKFckiks 198 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKEL-KSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI----VKFCKIKS 198 (273)
T ss_pred eEEEeccchhHHHHHhccc-ceEEEEEEEecCCCchHHHHhhhHHHhhccCCc----eeEEEeee
Confidence 4788999999999997542 345788999999999999999999999999985 88988754
No 200
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=80.49 E-value=4.3 Score=28.66 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHH---hCCCCCCEEEEEEEccc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKG---SGDQEAPVIFLKHNVST 162 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~---~~~~~~~v~f~kVDvde 162 (163)
.+.++++.+.. .+.+..+.|+ --..-..+.+.+.+++++ +++ ++.|+.+|.++
T Consensus 4 ~t~e~~~~~~~----~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kg---ki~Fv~~d~~~ 59 (111)
T cd03072 4 ITFENAEELTE----EGLPFLILFH--DKDDLESLKEFKQAVARQLISEKG---AINFLTADGDK 59 (111)
T ss_pred cccccHHHHhc----CCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCc---eEEEEEEechH
Confidence 45667777665 4555555555 222346788999999999 887 79999999875
No 201
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=75.45 E-value=14 Score=26.69 Aligned_cols=58 Identities=9% Similarity=0.137 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcccC
Q 031258 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVSTL 163 (163)
Q Consensus 103 ~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde~ 163 (163)
+++.-++=.+. -....+|-|--+--+.-.++.+.++++|+.+.+ +.++.|+-||-|++
T Consensus 8 ~~~m~e~wedd--~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~-np~LsiIWIDPD~F 65 (120)
T cd03074 8 PENMFETWEDD--LDGIHIVAFAEEEDPDGYEFLEILKEVARDNTD-NPDLSIIWIDPDDF 65 (120)
T ss_pred HHHHHHhhhcc--cCCceEEEEeccCCccHHHHHHHHHHHHHhcCc-CCCceEEEECCccC
Confidence 44444443332 456778889999999999999999999999986 67899999998874
No 202
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=74.90 E-value=1.2 Score=30.89 Aligned_cols=25 Identities=4% Similarity=-0.003 Sum_probs=19.4
Q ss_pred EEEECCCCccccccHHHHHHHHHHh
Q 031258 122 VDFYRTSCGSCKYIEQGFSKLCKGS 146 (163)
Q Consensus 122 V~FyA~WC~~Ck~~~P~~~~la~~~ 146 (163)
.-|+.++|+.|+.....+++..-.|
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~ 26 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEHGIEY 26 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCc
Confidence 4589999999999887777654443
No 203
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=74.77 E-value=4.4 Score=32.01 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=26.9
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCC
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~ 148 (163)
..+.+++.|.-.-||+|+...|.+.+....+++
T Consensus 83 ~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 83 YAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred CCCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 347899999999999998888888886666554
No 204
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=74.59 E-value=1.9 Score=30.32 Aligned_cols=24 Identities=8% Similarity=0.050 Sum_probs=18.5
Q ss_pred EEEECCCCccccccHHHHHHHHHH
Q 031258 122 VDFYRTSCGSCKYIEQGFSKLCKG 145 (163)
Q Consensus 122 V~FyA~WC~~Ck~~~P~~~~la~~ 145 (163)
..|+.|||+.|+.....+++-.-.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~~i~ 25 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEARGVA 25 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCC
Confidence 458999999999988777765433
No 205
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=73.68 E-value=12 Score=33.30 Aligned_cols=43 Identities=12% Similarity=0.236 Sum_probs=33.6
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.++.-+--|+++-|++|......+.+++...+ ++..-.+|..+
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p----~i~~~~id~~~ 158 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP----NISHTMIDGAL 158 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC----CceEEEEEchh
Confidence 34556888999999999999999999988865 47766676543
No 206
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=73.06 E-value=2.8 Score=27.72 Aligned_cols=37 Identities=8% Similarity=0.271 Sum_probs=28.9
Q ss_pred EEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
|+.|..+-|+-|......+.++.... .+.+-.||+++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-----~~~l~~vDI~~ 38 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-----PFELEEVDIDE 38 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-----TCEEEEEETTT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-----CceEEEEECCC
Confidence 56799999999999998888765543 47888888874
No 207
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=72.94 E-value=6.8 Score=27.73 Aligned_cols=53 Identities=15% Similarity=0.106 Sum_probs=34.9
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECC---CCccccccHHHHHHHHHHhC-CCCCCEEEEEEEccc
Q 031258 102 TDAEFFKILEKSKETGSLVVVDFYRT---SCGSCKYIEQGFSKLCKGSG-DQEAPVIFLKHNVST 162 (163)
Q Consensus 102 t~~~f~~~l~~s~~~~k~VvV~FyA~---WC~~Ck~~~P~~~~la~~~~-~~~~~v~f~kVDvde 162 (163)
|.++..... ..+.+++.+-.. --..-..+...+.++|++|+ + ++.|+.+|.++
T Consensus 5 ~~en~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g---ki~Fv~~D~~~ 61 (111)
T cd03073 5 TKDNRAQFT-----KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR---KLNFAVADKED 61 (111)
T ss_pred ccchHHHhc-----cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC---eEEEEEEcHHH
Confidence 345555553 333445443232 23344678889999999998 6 79999999875
No 208
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=72.34 E-value=5 Score=32.59 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=37.1
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCC-CCCCEEEEEEEc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGD-QEAPVIFLKHNV 160 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~-~~~~v~f~kVDv 160 (163)
.+.++||-+-..+|..|..-+..++.|..++.. ...+|.|+-||-
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~ 70 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNH 70 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcC
Confidence 789999999999999999999999999877743 133688888873
No 209
>PHA03075 glutaredoxin-like protein; Provisional
Probab=72.04 E-value=2.7 Score=30.52 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=27.4
Q ss_pred CEEEEEEECCCCccccccHHHHHHHHHHhC
Q 031258 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSG 147 (163)
Q Consensus 118 k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~ 147 (163)
|.+++-|.-|-|+-|+.....+.+|..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 467889999999999999999999999985
No 210
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=70.26 E-value=19 Score=25.70 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=40.6
Q ss_pred ecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 99 ~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
.|.+..+|..++. ....|+|-|..+-- .-......+.++++..++ .-.++.||+.+
T Consensus 5 ~i~d~KdfKKLLR----Tr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG---~gT~~~vdCgd 60 (112)
T cd03067 5 DISDHKDFKKLLR----TRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKG---QGTIAWIDCGD 60 (112)
T ss_pred cccchHHHHHHHh----hcCcEEEEEecchh-hHHHHHHHHHHHHHHhcC---ceeEEEEecCC
Confidence 4566789999997 67778887766643 333444588888999887 56888888754
No 211
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=67.37 E-value=18 Score=25.73 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=36.6
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEccc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvde 162 (163)
++++++|.=-|+-||.-. ....|++|.++|++ ..+.++..-+.+
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~--~gl~ILaFPcnq 63 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKD--KGLEILAFPCNQ 63 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGG--GTEEEEEEEBST
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhc--CCeEEEeeehHH
Confidence 789999999999999988 67799999999985 368887765544
No 212
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.04 E-value=15 Score=31.23 Aligned_cols=67 Identities=16% Similarity=0.239 Sum_probs=50.9
Q ss_pred ccceeecCCHHHHHHHHHhhccCCCEEEEEEECC----CCccccccHHHHHHHHHHhCCC-----CCCEEEEEEEccc
Q 031258 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRT----SCGSCKYIEQGFSKLCKGSGDQ-----EAPVIFLKHNVST 162 (163)
Q Consensus 94 ~~~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~----WC~~Ck~~~P~~~~la~~~~~~-----~~~v~f~kVDvde 162 (163)
...|..+ +.+.|...+... ..+-.++|.|.|. -|.-|++....+.-+++.+... ..++-|..||.||
T Consensus 39 ~~~VI~~-n~d~~~~~v~~~-prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e 114 (331)
T KOG2603|consen 39 ESGVIRM-NDDKFSKFVRPP-PRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE 114 (331)
T ss_pred CCCeEEe-cCcchhhhccCC-CCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc
Confidence 3456664 467999988743 3455688889885 6999999999999999988642 2278899999987
No 213
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=65.79 E-value=2.4 Score=31.51 Aligned_cols=42 Identities=7% Similarity=-0.066 Sum_probs=30.6
Q ss_pred CcCCcccCCcccEEEecccccccchhhhcccccCCCCCCccccc
Q 031258 16 RNADGKFSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTG 59 (163)
Q Consensus 16 ~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 59 (163)
+.+|+++++++.|+++|..... +....+ |+.....|...+..
T Consensus 118 ~~~a~~~~~~~~f~~~d~~~~~-~~~~~~-~i~~~~~P~~vi~~ 159 (184)
T PF13848_consen 118 QDIAKKFKGKINFVYVDADDFP-RLLKYF-GIDEDDLPALVIFD 159 (184)
T ss_dssp HHHHHCTTTTSEEEEEETTTTH-HHHHHT-TTTTSSSSEEEEEE
T ss_pred HHHHHhcCCeEEEEEeehHHhH-HHHHHc-CCCCccCCEEEEEE
Confidence 4688999999999999999443 345555 77777778655443
No 214
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.38 E-value=20 Score=27.66 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=34.4
Q ss_pred cCCCEEEEEEECCCCccccccHHHH---HHHHHHhCCCCCCEEEEEEEcc
Q 031258 115 ETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 115 ~~~k~VvV~FyA~WC~~Ck~~~P~~---~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+++..++.|-.+.|+.|.+|...+ .++.+-+.+ .+.++.+|+.
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~---hf~~~~l~i~ 86 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE---HFSAYYLNIS 86 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh---CeEEEEEEec
Confidence 3899999999999999999988643 455555554 5888888765
No 215
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=63.92 E-value=10 Score=30.99 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=26.5
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCC
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~ 148 (163)
.+|+.|+...+.|||.|...+=.+--.-.+|+.
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 899999999999999999877555555556654
No 216
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=62.04 E-value=3.8 Score=25.92 Aligned_cols=22 Identities=5% Similarity=-0.111 Sum_probs=16.5
Q ss_pred EEECCCCccccccHHHHHHHHH
Q 031258 123 DFYRTSCGSCKYIEQGFSKLCK 144 (163)
Q Consensus 123 ~FyA~WC~~Ck~~~P~~~~la~ 144 (163)
-|+.+||+.|+...-.+++..-
T Consensus 3 ly~~~~~p~~~rv~~~L~~~gl 24 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLAGI 24 (71)
T ss_pred EEecCCCcHHHHHHHHHHHcCC
Confidence 4788999999987766665443
No 217
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=61.81 E-value=5 Score=28.25 Aligned_cols=25 Identities=8% Similarity=0.192 Sum_probs=19.9
Q ss_pred EEEECCCCccccccHHHHHHHHHHh
Q 031258 122 VDFYRTSCGSCKYIEQGFSKLCKGS 146 (163)
Q Consensus 122 V~FyA~WC~~Ck~~~P~~~~la~~~ 146 (163)
.-|+.++|+.|+.....|++..-.|
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~ 26 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEHGVDY 26 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCce
Confidence 3588999999999888887765554
No 218
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=60.54 E-value=4.4 Score=29.56 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=19.8
Q ss_pred EEEEECCCCccccccHHHHHHHHHHh
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKGS 146 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~~ 146 (163)
+.-|+.+||+.|+.....+++..-.|
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~ 27 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPF 27 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCc
Confidence 44688999999999887777654443
No 219
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=56.99 E-value=53 Score=22.81 Aligned_cols=53 Identities=9% Similarity=0.167 Sum_probs=36.4
Q ss_pred eeecCCHHHHHHHHHhhccCC-CEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEE
Q 031258 97 VREFKTDAEFFKILEKSKETG-SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHN 159 (163)
Q Consensus 97 v~~i~t~~~f~~~l~~s~~~~-k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVD 159 (163)
+..+.+.++++..+. .. +.+||-|+..--+ .+...+.++|+.+++ .+.|+...
T Consensus 2 v~~i~s~~ele~f~~----~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd---d~~F~~t~ 55 (107)
T cd03068 2 SKQLQTLKQVQEFLR----DGDDVIIIGVFSGEED---PAYQLYQDAANSLRE---DYKFHHTF 55 (107)
T ss_pred ceEcCCHHHHHHHHh----cCCCEEEEEEECCCCC---HHHHHHHHHHHhccc---CCEEEEEC
Confidence 456778888988876 44 6777767766433 456778889998865 46775543
No 220
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=55.16 E-value=35 Score=29.52 Aligned_cols=60 Identities=10% Similarity=0.055 Sum_probs=37.4
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccc-----cHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKY-----IEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 96 ~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~-----~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.|.. ++..||.+++. +...++|.||.|--+.=-. |.-.+-+|+++.-+ ...+.|+.||..
T Consensus 35 RVi~-LneKNfk~~lK----kyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE-~~gigfg~VD~~ 99 (383)
T PF01216_consen 35 RVID-LNEKNFKRALK----KYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLE-DKGIGFGMVDSK 99 (383)
T ss_dssp -CEE-E-TTTHHHHHH----H-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCG-GCTEEEEEEETT
T ss_pred ceEE-cchhHHHHHHH----hhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhcc-ccCcceEEeccH
Confidence 4444 66889999998 6789999999986433222 22224456666544 457999999975
No 221
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=54.97 E-value=7.5 Score=27.49 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=19.0
Q ss_pred EEECCCCccccccHHHHHHHHHHh
Q 031258 123 DFYRTSCGSCKYIEQGFSKLCKGS 146 (163)
Q Consensus 123 ~FyA~WC~~Ck~~~P~~~~la~~~ 146 (163)
-|+.++|+.|+.....+++..-.|
T Consensus 3 iY~~~~C~~c~ka~~~L~~~~i~~ 26 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEANGIEY 26 (117)
T ss_pred EEeCCCCHHHHHHHHHHHHcCCce
Confidence 588999999999888777754444
No 222
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=53.76 E-value=43 Score=26.32 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=32.8
Q ss_pred CCCEEEEEEECCCCc-cccccHHHHHHHHHHhC-CCCCC--EEEEEEEcc
Q 031258 116 TGSLVVVDFYRTSCG-SCKYIEQGFSKLCKGSG-DQEAP--VIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~-~Ck~~~P~~~~la~~~~-~~~~~--v~f~kVDvd 161 (163)
.+++++|.|.=+.|+ -|-.+...+.++.++.. ....+ ++++.||-+
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPe 115 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPE 115 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCC
Confidence 789999999877775 68888888888887776 33334 455666543
No 223
>PRK12559 transcriptional regulator Spx; Provisional
Probab=53.61 E-value=10 Score=27.68 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=20.4
Q ss_pred EEEEECCCCccccccHHHHHHHHHHh
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKGS 146 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~~ 146 (163)
+..|+.|+|+.|+.....|++-.-.|
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~ 27 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDY 27 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCe
Confidence 45689999999999888777665444
No 224
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=53.44 E-value=4.3 Score=34.26 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=26.5
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhC
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSG 147 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~ 147 (163)
+...|-+.||+.|||..+...|.++-....|.
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~ 106 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS 106 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhcc
Confidence 46688899999999999999998877666664
No 225
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=53.10 E-value=5.6 Score=23.75 Aligned_cols=24 Identities=4% Similarity=-0.042 Sum_probs=17.9
Q ss_pred EEECCCCccccccHHHHHHHHHHh
Q 031258 123 DFYRTSCGSCKYIEQGFSKLCKGS 146 (163)
Q Consensus 123 ~FyA~WC~~Ck~~~P~~~~la~~~ 146 (163)
-|+.++|+.|+...-.++...-.|
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~~ 26 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLPY 26 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCCc
Confidence 478899999998877777654433
No 226
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=50.65 E-value=7.2 Score=24.23 Aligned_cols=24 Identities=0% Similarity=-0.124 Sum_probs=18.1
Q ss_pred EEECCCCccccccHHHHHHHHHHh
Q 031258 123 DFYRTSCGSCKYIEQGFSKLCKGS 146 (163)
Q Consensus 123 ~FyA~WC~~Ck~~~P~~~~la~~~ 146 (163)
-|+.+||+.|+...-.+....-.|
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~~ 26 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGIDV 26 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCCc
Confidence 477889999999887777654443
No 227
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=50.05 E-value=50 Score=22.63 Aligned_cols=51 Identities=25% Similarity=0.342 Sum_probs=34.6
Q ss_pred eecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEE
Q 031258 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKH 158 (163)
Q Consensus 98 ~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kV 158 (163)
..+.+.++++..+. ..+.+||-|+..--+ .+...+.++++.+++ ++.|+..
T Consensus 3 ~~i~s~~~l~~f~~----~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~~ 53 (104)
T cd03069 3 VELRTEAEFEKFLS----DDDASVVGFFEDEDS---KLLSEFLKAADTLRE---SFRFAHT 53 (104)
T ss_pred cccCCHHHHHHHhc----cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh---cCEEEEE
Confidence 45567778888776 566777777766333 466788888888865 4666543
No 228
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=48.95 E-value=92 Score=22.47 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=39.1
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECC--CCcc-c-cccHHHHHHHHHHhCCCCCC-EEEEEEEccc
Q 031258 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRT--SCGS-C-KYIEQGFSKLCKGSGDQEAP-VIFLKHNVST 162 (163)
Q Consensus 96 ~v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~--WC~~-C-k~~~P~~~~la~~~~~~~~~-v~f~kVDvde 162 (163)
.++++.+.+.|++.-. .++.=+|-|.-. -|.+ + ..+...+.+++++|++ + +.|+.+|.++
T Consensus 3 ~~~~l~~~~~~~~~C~----~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg---k~i~Fv~vd~~~ 67 (130)
T cd02983 3 EIIELTSEDVFEETCE----EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK---KPWGWLWTEAGA 67 (130)
T ss_pred ceEEecCHHHHHhhcc----CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC---CcEEEEEEeCcc
Confidence 3566666666666553 344555555321 1222 2 3567889999999987 5 9999999875
No 229
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=48.24 E-value=41 Score=25.73 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=33.1
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+++++|.=.|+-||.--+ ...|+.|.++|++ ..+.++..-+.
T Consensus 24 ~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~--~Gf~VLgFPcN 66 (162)
T COG0386 24 KGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKD--KGFEVLGFPCN 66 (162)
T ss_pred CCcEEEEEEcccccCCcHh-HHHHHHHHHHHhh--CCcEEEecccc
Confidence 8999999999999998664 3467888888876 35777665544
No 230
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=47.74 E-value=9.3 Score=26.97 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=19.7
Q ss_pred EEEECCCCccccccHHHHHHHHHHh
Q 031258 122 VDFYRTSCGSCKYIEQGFSKLCKGS 146 (163)
Q Consensus 122 V~FyA~WC~~Ck~~~P~~~~la~~~ 146 (163)
..|+.++|+.|+.....+++..-.|
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~~gi~~ 27 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEEHQIPF 27 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCce
Confidence 4578899999999888887765444
No 231
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=44.76 E-value=18 Score=27.24 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=18.1
Q ss_pred EEEEEEECCCCccccccHHHHH
Q 031258 119 LVVVDFYRTSCGSCKYIEQGFS 140 (163)
Q Consensus 119 ~VvV~FyA~WC~~Ck~~~P~~~ 140 (163)
.-++.|+.|.||-|......++
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk 47 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK 47 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH
Confidence 4466799999999999877766
No 232
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=44.69 E-value=76 Score=28.57 Aligned_cols=51 Identities=8% Similarity=0.063 Sum_probs=37.1
Q ss_pred HHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEc
Q 031258 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (163)
Q Consensus 104 ~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDv 160 (163)
+++.+.+..- .+.+.++.|+.+-|..|..+...++++++- .+ ++.+...|.
T Consensus 355 ~~l~~~~~~l--~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~---~i~~~~~~~ 405 (555)
T TIGR03143 355 QQLVGIFGRL--ENPVTLLLFLDGSNEKSAELQSFLGEFASL-SE---KLNSEAVNR 405 (555)
T ss_pred HHHHHHHHhc--CCCEEEEEEECCCchhhHHHHHHHHHHHhc-CC---cEEEEEecc
Confidence 4466666643 566778889999999999999999998853 33 677666553
No 233
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=43.09 E-value=14 Score=33.93 Aligned_cols=53 Identities=13% Similarity=0.232 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCCccccccHHH-H--HHHHHHhCCCCCCEEEEEEEccc
Q 031258 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-F--SKLCKGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 103 ~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~-~--~~la~~~~~~~~~v~f~kVDvde 162 (163)
.+.|+++-. +++++++...=+.|.+|..|... | ++.++...+ +++-++||.+|
T Consensus 102 qeaf~kar~----enkpifLsvgystchwchvmekesfeneet~~ilne---nfv~ikVDREE 157 (786)
T KOG2244|consen 102 QEAFNKARA----ENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNE---NFVKIKVDREE 157 (786)
T ss_pred HHHHHHHHh----cCCCEEEEcccccchheeeeecccccCHHHHHHHhh---hhhhhccChhh
Confidence 467887776 89999999999999999988742 2 224444443 45666666654
No 234
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=42.93 E-value=12 Score=23.71 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=17.5
Q ss_pred EEEECCCCccccccHHHHHHHHHH
Q 031258 122 VDFYRTSCGSCKYIEQGFSKLCKG 145 (163)
Q Consensus 122 V~FyA~WC~~Ck~~~P~~~~la~~ 145 (163)
.-|+.+.|+.|+...-.+.+..-.
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~~gi~ 26 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDYHGIP 26 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHHCCCc
Confidence 347789999999988666655433
No 235
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=39.61 E-value=22 Score=25.93 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=19.6
Q ss_pred EEEEECCCCccccccHHHHHHHHHHh
Q 031258 121 VVDFYRTSCGSCKYIEQGFSKLCKGS 146 (163)
Q Consensus 121 vV~FyA~WC~~Ck~~~P~~~~la~~~ 146 (163)
+.-|+-|+|+.|+.....+++-.-.|
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~ 27 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSY 27 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 34578899999999888777665443
No 236
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=38.80 E-value=14 Score=23.02 Aligned_cols=24 Identities=0% Similarity=-0.198 Sum_probs=17.5
Q ss_pred EEECCCCccccccHHHHHHHHHHh
Q 031258 123 DFYRTSCGSCKYIEQGFSKLCKGS 146 (163)
Q Consensus 123 ~FyA~WC~~Ck~~~P~~~~la~~~ 146 (163)
-|+.++|+.|+...-.+++..-.|
T Consensus 3 ly~~~~~~~~~~v~~~l~~~gi~~ 26 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLAEKGVSV 26 (73)
T ss_pred EEECCCChhHHHHHHHHHHcCCcc
Confidence 477899999999877666554433
No 237
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=37.67 E-value=13 Score=23.30 Aligned_cols=23 Identities=9% Similarity=-0.061 Sum_probs=16.6
Q ss_pred EEECCCCccccccHHHHHHHHHH
Q 031258 123 DFYRTSCGSCKYIEQGFSKLCKG 145 (163)
Q Consensus 123 ~FyA~WC~~Ck~~~P~~~~la~~ 145 (163)
-++.++|+.|+...-.+....-.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~ 25 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP 25 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC
Confidence 36788999999887766655433
No 238
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.96 E-value=18 Score=24.43 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=19.0
Q ss_pred EEEECCCCccccccHHHHHHHHHHh
Q 031258 122 VDFYRTSCGSCKYIEQGFSKLCKGS 146 (163)
Q Consensus 122 V~FyA~WC~~Ck~~~P~~~~la~~~ 146 (163)
+.|+|.-||.|......++++.-.|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y 29 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY 29 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc
Confidence 4599999999987777776665444
No 239
>PLN02182 cytidine deaminase
Probab=35.94 E-value=14 Score=31.58 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=10.7
Q ss_pred EECCCCccccccHHHH
Q 031258 124 FYRTSCGSCKYIEQGF 139 (163)
Q Consensus 124 FyA~WC~~Ck~~~P~~ 139 (163)
+++| ||+||++.-.|
T Consensus 128 ~~sP-CG~CRQfm~Ef 142 (339)
T PLN02182 128 FGTP-CGHCLQFLMEM 142 (339)
T ss_pred CcCC-CchhHHHHHHh
Confidence 3556 99999985444
No 240
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=35.60 E-value=1.8e+02 Score=21.39 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHH-HHhCCCCCCEEEEEEEccc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLC-KGSGDQEAPVIFLKHNVST 162 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la-~~~~~~~~~v~f~kVDvde 162 (163)
++.-+|++++. ..+.++|.|=... |=-.-.-.|.+++ +..+. .+++.++.|-+.+
T Consensus 9 LD~~tFdKvi~----kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~-~~dLLvAeVGikD 64 (126)
T PF07912_consen 9 LDELTFDKVIP----KFKYVLVKFDVAY--PYGEKHDAFKKLAKEASAS-SDDLLVAEVGIKD 64 (126)
T ss_dssp ESTTHHHHHGG----GSSEEEEEEEESS----CHHHHHHHHHHHHHHCC--SSEEEEEEECBS
T ss_pred ccceehhheec----cCceEEEEEeccC--CCcchHHHHHHHHHHHhcC-CCceEEEEeCccc
Confidence 34569999998 7899999997654 4444566788998 55543 5579999997753
No 241
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=33.73 E-value=96 Score=23.99 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=35.8
Q ss_pred CCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.+++++|.=-|+-||--..-...+..|.++|++ ..+.++..-+.
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~--~Gl~ILaFPCN 76 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKD--QGLEILAFPCN 76 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhh--CCeEEEEeccc
Confidence 789999999999999998777899999999976 35776655443
No 242
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=33.56 E-value=20 Score=22.33 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=17.5
Q ss_pred EEECCCCccccccHHHHHHHHHHh
Q 031258 123 DFYRTSCGSCKYIEQGFSKLCKGS 146 (163)
Q Consensus 123 ~FyA~WC~~Ck~~~P~~~~la~~~ 146 (163)
-|+.++|+.|+...-.+++..-.|
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi~~ 26 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKALGLEL 26 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHcCCCC
Confidence 478999999998776666654443
No 243
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=31.89 E-value=20 Score=22.99 Aligned_cols=23 Identities=9% Similarity=0.132 Sum_probs=16.2
Q ss_pred EEEECCCCccccccHHHHHHHHH
Q 031258 122 VDFYRTSCGSCKYIEQGFSKLCK 144 (163)
Q Consensus 122 V~FyA~WC~~Ck~~~P~~~~la~ 144 (163)
.-++.++|+.|+...-.+.+..-
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~gi 25 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELEL 25 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcCC
Confidence 34667899999987766665443
No 244
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=31.66 E-value=36 Score=25.29 Aligned_cols=11 Identities=27% Similarity=0.933 Sum_probs=8.1
Q ss_pred ECCCCccccccH
Q 031258 125 YRTSCGSCKYIE 136 (163)
Q Consensus 125 yA~WC~~Ck~~~ 136 (163)
++| ||.||+..
T Consensus 85 ~sP-CG~CRQ~i 95 (134)
T COG0295 85 VSP-CGACRQVL 95 (134)
T ss_pred cCC-cHHHHHHH
Confidence 445 99999865
No 245
>PF11539 DUF3228: Protein of unknown function (DUF3228); InterPro: IPR021610 This family of proteins has no known function. ; PDB: 2PD0_B 4FBD_B.
Probab=26.71 E-value=54 Score=25.88 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCCcc
Q 031258 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGS 131 (163)
Q Consensus 101 ~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~ 131 (163)
.+.+.|.+.+.+.-..+..-|++=|||-|-|
T Consensus 25 ~~ke~F~~kvne~~~~~~~~l~dGYAPFCKH 55 (197)
T PF11539_consen 25 CDKEEFVEKVNEIYKEGPAKLVDGYAPFCKH 55 (197)
T ss_dssp S-HHHHHHHHHHHHHCCT--EEE-SSTTEEE
T ss_pred cCHHHHHHHHHHHHhcCCCccccccCcceee
Confidence 5688998887765434677799999998865
No 246
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=25.42 E-value=57 Score=23.07 Aligned_cols=26 Identities=4% Similarity=0.059 Sum_probs=20.2
Q ss_pred EEEECCCCccccccHHHHHHHHHHhC
Q 031258 122 VDFYRTSCGSCKYIEQGFSKLCKGSG 147 (163)
Q Consensus 122 V~FyA~WC~~Ck~~~P~~~~la~~~~ 147 (163)
.-|+-|.|+.|+.....+++-.-.|.
T Consensus 3 ~iy~~p~C~~crkA~~~L~~~gi~~~ 28 (113)
T cd03033 3 IFYEKPGCANNARQKALLEAAGHEVE 28 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCcE
Confidence 45889999999998887877655553
No 247
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=24.18 E-value=45 Score=25.83 Aligned_cols=17 Identities=29% Similarity=0.817 Sum_probs=12.5
Q ss_pred EECCCCccccccHHHHHH
Q 031258 124 FYRTSCGSCKYIEQGFSK 141 (163)
Q Consensus 124 FyA~WC~~Ck~~~P~~~~ 141 (163)
|-+| ||.|+++.-.+..
T Consensus 101 f~tP-CG~CRQfl~Ef~~ 117 (173)
T KOG0833|consen 101 FTTP-CGVCRQFLREFGN 117 (173)
T ss_pred cCCC-cHHHHHHHHHHhh
Confidence 6666 9999997755544
No 248
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=22.16 E-value=1.4e+02 Score=23.55 Aligned_cols=44 Identities=20% Similarity=0.173 Sum_probs=33.8
Q ss_pred CCCEEEEEEE-CCCCccccccHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 031258 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVS 161 (163)
Q Consensus 116 ~~k~VvV~Fy-A~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~kVDvd 161 (163)
.++++|+.|| +.--.-|-.....+.+++++++.. ++.++.+.+|
T Consensus 32 ~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~--g~eVigvS~D 76 (194)
T COG0450 32 YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR--GVEVIGVSTD 76 (194)
T ss_pred cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc--CCEEEEEecC
Confidence 3489999999 788888988888899999988764 3555555554
No 249
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.25 E-value=89 Score=28.01 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=19.7
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccc
Q 031258 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSC 132 (163)
Q Consensus 97 v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~C 132 (163)
++.+.+-++|..+|. ++++++ ||||+.-
T Consensus 467 ~~~v~~~~eF~~aL~----~k~iil----aPwcg~~ 494 (551)
T KOG4163|consen 467 IVKVNTWEEFVKALD----QKKIIL----APWCGEI 494 (551)
T ss_pred eeeeeeHHHHHHHhc----cCCEEE----ccccCcH
Confidence 556667778888885 555554 8999863
No 250
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=20.46 E-value=1.2e+02 Score=23.48 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=19.0
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCCcc
Q 031258 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGS 131 (163)
Q Consensus 97 v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~ 131 (163)
+..+.+-++|.+.+. +++.|+ |||||.
T Consensus 128 ~~~~~~~~e~~~~~~----~~~~v~----~~wcg~ 154 (202)
T cd00862 128 TRIVDTWEEFKEALN----EKGIVL----APWCGE 154 (202)
T ss_pred eEeeCCHHHHHHHHh----cCCEEE----EEecCC
Confidence 555667888888886 455544 699973
No 251
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=20.37 E-value=2.8e+02 Score=18.59 Aligned_cols=52 Identities=8% Similarity=0.185 Sum_probs=33.4
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCCccccccHHHHHHHHHHhCCCCCCEEEEE
Q 031258 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLK 157 (163)
Q Consensus 97 v~~i~t~~~f~~~l~~s~~~~k~VvV~FyA~WC~~Ck~~~P~~~~la~~~~~~~~~v~f~k 157 (163)
+..+.+.++++..+.. .+..+||-|+..--+ .+...|.++++.+++ .+.|+.
T Consensus 2 v~~i~~~~~~e~~~~~---~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~ 53 (102)
T cd03066 2 VEIINSERELQAFENI---EDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP---YIKFFA 53 (102)
T ss_pred ceEcCCHHHHHHHhcc---cCCeEEEEEECCCCC---HHHHHHHHHHHhhhc---CCEEEE
Confidence 4566778888888851 244566666655333 456678888888865 456644
Done!