BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031259
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S9C|A Chain A, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|B Chain B, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|C Chain C, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|D Chain D, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|E Chain E, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|F Chain F, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|G Chain G, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|H Chain H, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|I Chain I, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|J Chain J, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|K Chain K, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|L Chain L, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
Length = 298
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 93/157 (59%), Gaps = 10/157 (6%)
Query: 2 NRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSV-VKIPKSQPFAVFEDYTQPSQALVYRLS 60
N+ + FL G+GGF K + V V V IP P AV D T +QA +YRLS
Sbjct: 140 NQFSLFLVGSGGFGG--------KRTSDKVKVAVAIPNRPPDAVLTDTTSLNQAALYRLS 191
Query: 61 GDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVY 120
GD+NPLH DP A AGF +PILHGLCT GF+ R +++ D + K + +RF VY
Sbjct: 192 GDWNPLHIDPNFASLAGFDKPILHGLCTFGFSARRVLQQFADNDVSRFKAVKARFAKPVY 251
Query: 121 PGETLVTEMWLQGLRVIYQVKVKERNRSALS-GFVDV 156
PG+TL TEMW +G R+ +Q KV+E +S +VD+
Sbjct: 252 PGQTLQTEMWKEGNRIHFQTKVQETGDIVISNAYVDL 288
>pdb|3KH8|A Chain A, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
pdb|3KH8|B Chain B, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
Length = 332
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 88/148 (59%), Gaps = 10/148 (6%)
Query: 6 AFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNP 65
+F+RG G+ K + +P V +IPK QP E T P QA VYRLSGDYN
Sbjct: 181 SFIRGLTGYEG--------KGRKLPARV-QIPKRQPDFNDEFKTSPHQAQVYRLSGDYNS 231
Query: 66 LHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETL 125
LH DP +AK+ GF +PILHGLC+MG A RA+ K C GD K+I RF +PGET+
Sbjct: 232 LHIDPEIAKSVGFKQPILHGLCSMGVASRALFKQFCGGDVARFKSIRVRFSSPCFPGETI 291
Query: 126 VTEMWLQGL-RVIYQVKVKERNRSALSG 152
T MW +G +V++Q VKER + G
Sbjct: 292 QTRMWQEGSGKVLFQAVVKERGAVIVDG 319
>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional
Enzyme Type 2 From Drosophila Melanogaster
Length = 613
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 91/163 (55%), Gaps = 7/163 (4%)
Query: 2 NRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSG 61
N+ T F+ GAG F P + +P+ P QP A + T QA +YRLSG
Sbjct: 449 NQSTTFIVGAGKFGGKKDPIA----GVVPLQ--PAPNRQPDATVQYTTSEDQAALYRLSG 502
Query: 62 DYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYP 121
D NPLH DP +A AGF PILHGLCT+GF+VRA++ +P + K + RF V P
Sbjct: 503 DKNPLHIDPQMALLAGFKTPILHGLCTLGFSVRAVLAQFADNNPALFKAVKVRFSGPVIP 562
Query: 122 GETLVTEMWLQGLRVIYQVKVKERNRSALSG-FVDVHRLASSL 163
G+TL ++W QG R+ ++ V E + +SG +VD+ + L
Sbjct: 563 GQTLRVDLWKQGTRINFRTVVVETGKEVISGAYVDLKSSQAKL 605
>pdb|2CDH|S Chain S, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|T Chain T, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|U Chain U, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|V Chain V, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|W Chain W, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|X Chain X, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 248
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 79/124 (63%), Gaps = 1/124 (0%)
Query: 34 VKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAV 93
V IP P AV D T +QA +YRLSGD+NPLH DP A AGF +PILHGLCT GF+
Sbjct: 124 VAIPNRPPDAVLTDTTSLNQAALYRLSGDWNPLHIDPNFASLAGFDKPILHGLCTFGFSA 183
Query: 94 RAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQGLRVIYQVKVKERNRSALS-G 152
R +++ D + K + +RF VYPG+TL TEMW +G R+ +Q KV+E +S
Sbjct: 184 RRVLQQFADNDVSRFKAVKARFAKPVYPGQTLQTEMWKEGNRIHFQTKVQETGDIVISNA 243
Query: 153 FVDV 156
+VD+
Sbjct: 244 YVDL 247
>pdb|3KHP|A Chain A, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|B Chain B, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|C Chain C, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|D Chain D, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
Length = 311
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 35 KIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVA-KAAGFSRPILHGLCTMGFAV 93
+ P P A + T+ QAL+YRLSGD NPLHSDP A + AGF +PILHGLCT G A
Sbjct: 180 EFPDRHPDARIDMPTREDQALIYRLSGDRNPLHSDPWFATQLAGFPKPILHGLCTYGVAG 239
Query: 94 RAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMW-LQGLRVIYQVKV 142
RA++ + G + +I +RF V+PGETL T +W + R +++ +V
Sbjct: 240 RALVAELGGGVAANITSIAARFTKPVFPGETLSTVIWRTEPGRAVFRTEV 289
>pdb|1PN2|A Chain A, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|B Chain B, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|C Chain C, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|D Chain D, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
Length = 280
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 60/101 (59%), Gaps = 8/101 (7%)
Query: 54 ALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAII-KFICRGDPNMVKNIF 112
A +YRLSGD NPLH DP AK A F +PILHG CT G + +A+I KF G N +K
Sbjct: 174 AALYRLSGDRNPLHIDPNFAKGAKFPKPILHGXCTYGLSAKALIDKF---GXFNEIK--- 227
Query: 113 SRFLLHVYPGETLVTEMWLQGLR-VIYQVKVKERNRSALSG 152
+RF V+PGETL W + +++Q V +R A++
Sbjct: 228 ARFTGIVFPGETLRVLAWKESDDTIVFQTHVVDRGTIAINN 268
>pdb|1PN4|A Chain A, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|B Chain B, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|C Chain C, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|D Chain D, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa
Length = 280
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 8/101 (7%)
Query: 54 ALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAII-KFICRGDPNMVKNIF 112
A +YRLSGD NPL DP AK A F +PILHG+CT G + +A+I KF M I
Sbjct: 174 AALYRLSGDRNPLQIDPNFAKGAKFPKPILHGMCTYGLSAKALIDKF------GMFNEIK 227
Query: 113 SRFLLHVYPGETLVTEMWLQGLR-VIYQVKVKERNRSALSG 152
+RF V+PGETL W + +++Q V +R A++
Sbjct: 228 ARFTGIVFPGETLRVLAWKESDDTIVFQTHVVDRGTIAINN 268
>pdb|1IQ6|A Chain A, (R)-Hydratase From A. Caviae Involved In Pha Biosynthesis
pdb|1IQ6|B Chain B, (R)-Hydratase From A. Caviae Involved In Pha Biosynthesis
Length = 134
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 59 LSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLH 118
LS D+NPLH DP A F RPI+HG+ + ++ G ++ F L
Sbjct: 29 LSEDFNPLHLDPAFAATTAFERPIVHGML-LASLFSGLLGQQLPGKGSIYLGQSLSFKLP 87
Query: 119 VYPGETLVTEMWLQGLR 135
V+ G+ + E+ + LR
Sbjct: 88 VFVGDEVTAEVEVTALR 104
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Query: 41 PFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIK-F 99
P AV + YT + R+SGD NP+H A A I HG+ + +VRA+I+ +
Sbjct: 1538 PIAVLDSYTPSTNEPYARVSGDLNPIHVSRHFASYANLPGTITHGMFSSA-SVRALIENW 1596
Query: 100 ICRGDPNMVKNIFSRFLLHVYPGETLVTEM----WLQGLRVIYQVKVKERNRSALSGFVD 155
+ V+ +F+ V P L T + + G ++I E + L+G +
Sbjct: 1597 AADSVSSRVRGYTCQFVDMVLPNTALKTSIQHVGMINGRKLIKFETRNEDDVVVLTGEAE 1656
Query: 156 VHR 158
+ +
Sbjct: 1657 IEQ 1659
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 37.7 bits (86), Expect = 0.003, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 59 LSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIF---SRF 115
+SGD+NP+H+D A AG PI+HG+ A + G P + +RF
Sbjct: 1242 VSGDHNPIHTDRAAALLAGLEGPIVHGMWLSAAAQHVVTA--TDGKPVPPAKLIGWTARF 1299
Query: 116 LLHVYPGETL 125
L V PG+ +
Sbjct: 1300 LGMVKPGDQV 1309
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 2060
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 58 RLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIK-FICRGDPNMVKNIFSRFL 116
R+SGDYNP+H + + A I HG+ T AVR++++ + + V++ +
Sbjct: 1564 RVSGDYNPIHVSRVFSSYANLPGTITHGMYTSA-AVRSLVETWAAENNIGRVRSYHVNMV 1622
Query: 117 LHVYPGETLVTEMWLQGL---RVIYQVKV--KERNRSALSGFVDVHR 158
V P + + ++ G+ R I +V K+ + S L G +V +
Sbjct: 1623 GMVLPNDAITVKLEHVGMIAGRKIIKVDARNKDTDESVLQGEAEVEQ 1669
>pdb|3IR3|A Chain A, Crystal Structure Of Human 3-Hydroxyacyl-Thioester
Dehydratase 2 (Htd2)
pdb|3IR3|B Chain B, Crystal Structure Of Human 3-Hydroxyacyl-Thioester
Dehydratase 2 (Htd2)
Length = 148
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 48 YTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNM 107
+TQ A L+GD NPLH + AK F I+HG+ G + A++ G +
Sbjct: 28 FTQTDVATFSELTGDVNPLHLNEDFAKHTKFGNTIVHGVLINGL-ISALLGTKMPGPGCV 86
Query: 108 VKNIFSRFLLHVYPGETLVTEMWLQGLR-----VIYQVKVKERNRSALSGFVDV 156
+ F +Y GE ++ ++ L+ + V E ++ + G+V V
Sbjct: 87 FLSQEISFPAPLYIGEVVLASAEVKKLKRFIAIIAVSCSVIESKKTVMEGWVKV 140
>pdb|1Q6W|A Chain A, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|B Chain B, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|C Chain C, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|D Chain D, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|E Chain E, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|F Chain F, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|G Chain G, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|H Chain H, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|I Chain I, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|J Chain J, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|K Chain K, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|L Chain L, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
Length = 161
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 59 LSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRG-DPNMVKNIFS---- 113
L+ D+ PLH+D AK F +PI G + A+ + + I D + V F
Sbjct: 42 LTADFFPLHTDVEFAKKTIFGKPIAQGXLVLSIALGXVDQVILSNYDVSSVIAFFGIKDV 101
Query: 114 RFLLHVYPGETL 125
RFL V+ G+T+
Sbjct: 102 RFLRPVFIGDTI 113
>pdb|2B3M|A Chain A, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
pdb|3K67|A Chain A, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
pdb|3K67|B Chain B, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
Length = 159
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 38 KSQPFAVFEDYTQPSQALVYR-------------LSGDYNPLHSDPMVAKAAGFSRPILH 84
K +PF FE + Y +SGD NP+H D A F ++H
Sbjct: 25 KVKPFEKFEGELKEGYRFEYEKKLCEIDVAMFGLISGDLNPVHFDEDFASKTRFGGRVVH 84
Query: 85 GLCTMGFAVRAIIKF 99
G+ T A+ +
Sbjct: 85 GMLTTSLVSAAVARL 99
>pdb|2C2I|A Chain A, Structure And Function Of Rv0130, A Conserved
Hypothetical Protein From M.Tuberculosis
pdb|2C2I|B Chain B, Structure And Function Of Rv0130, A Conserved
Hypothetical Protein From M.Tuberculosis
Length = 151
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 49 TQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGF 91
TQ L +GD+ +H DP A A F I HG T+
Sbjct: 27 TQEEVNLFADATGDHQWIHVDPERAAAGPFGTTIAHGFXTLAL 69
>pdb|4E3E|A Chain A, Crystal Structure Of Putative Maoc Domain Protein
Dehydratase From Chloroflexus Aurantiacus J-10-Fl
pdb|4E3E|B Chain B, Crystal Structure Of Putative Maoc Domain Protein
Dehydratase From Chloroflexus Aurantiacus J-10-Fl
Length = 352
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 51/140 (36%), Gaps = 29/140 (20%)
Query: 38 KSQPFAVFEDY--------------TQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPIL 83
K+ P FED+ T+ AL L G L S A++ G R +
Sbjct: 4 KTNPGNFFEDFRLGQTIVHATPRTITEGDVALYTSLYGSRFALTSSTPFAQSLGLERAPI 63
Query: 84 HGLCTMGFAVRAIIKFICRGDPNMVKNIF---SRFLLHVYPGETLVTEMWLQGLRVIYQV 140
L + I N + N+ RF VYPG+TL T + GLR
Sbjct: 64 DSLLVFHIVFGKTVPDISL---NAIANLGYAGGRFGAVVYPGDTLSTTSKVIGLR----- 115
Query: 141 KVKERNRSALSGFVDVHRLA 160
+N+ +G V VH +
Sbjct: 116 ----QNKDGKTGVVYVHSVG 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,679,954
Number of Sequences: 62578
Number of extensions: 172893
Number of successful extensions: 382
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 16
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)