Query 031259
Match_columns 163
No_of_seqs 132 out of 1420
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 11:33:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02864 enoyl-CoA hydratase 100.0 2.3E-34 5.1E-39 237.4 20.8 162 2-163 149-310 (310)
2 cd03447 FAS_MaoC FAS_MaoC, the 100.0 3.7E-29 8E-34 182.0 16.5 117 43-159 5-126 (126)
3 cd03453 SAV4209_like SAV4209_l 100.0 1.3E-28 2.8E-33 178.7 16.1 119 36-157 1-127 (127)
4 cd03452 MaoC_C MaoC_C The C-t 100.0 1.2E-28 2.5E-33 182.4 11.4 125 31-159 2-139 (142)
5 cd03455 SAV4209 SAV4209 is a S 100.0 1.4E-27 3E-32 172.2 15.5 118 37-157 1-123 (123)
6 cd03451 FkbR2 FkbR2 is a Strep 100.0 3.4E-28 7.3E-33 179.4 12.4 131 31-161 4-145 (146)
7 cd03448 HDE_HSD HDE_HSD The R 100.0 4.8E-27 1E-31 170.0 15.3 117 37-153 1-117 (122)
8 PRK13693 (3R)-hydroxyacyl-ACP 100.0 1.1E-26 2.4E-31 172.2 16.4 124 31-157 6-140 (142)
9 cd03446 MaoC_like MoaC_like 99.9 6.2E-27 1.3E-31 171.6 13.9 124 31-157 2-139 (140)
10 KOG1206 Peroxisomal multifunct 99.9 5.6E-28 1.2E-32 188.6 8.0 143 1-153 119-261 (272)
11 COG2030 MaoC Acyl dehydratase 99.9 9.9E-27 2.2E-31 175.4 14.0 129 31-159 17-155 (159)
12 cd03449 R_hydratase (R)-hydrat 99.9 5.8E-26 1.3E-30 163.2 16.0 121 34-157 1-127 (128)
13 cd03454 YdeM YdeM is a Bacillu 99.9 9E-26 1.9E-30 165.8 12.5 125 31-157 1-138 (140)
14 PRK08190 bifunctional enoyl-Co 99.9 3E-25 6.5E-30 192.1 16.5 129 31-162 11-145 (466)
15 cd03441 R_hydratase_like (R)-h 99.9 2.2E-24 4.8E-29 154.5 14.8 112 45-156 7-126 (127)
16 TIGR02278 PaaN-DH phenylacetic 99.9 1.8E-24 4E-29 193.9 14.0 143 7-157 507-660 (663)
17 PF01575 MaoC_dehydratas: MaoC 99.9 6E-25 1.3E-29 158.4 8.5 98 35-132 5-102 (122)
18 cd03450 NodN NodN (nodulation 99.9 8.6E-24 1.9E-28 157.9 14.8 121 35-155 11-144 (149)
19 PRK13691 (3R)-hydroxyacyl-ACP 99.9 9.6E-24 2.1E-28 160.2 15.1 126 33-159 5-145 (166)
20 PRK13692 (3R)-hydroxyacyl-ACP 99.9 4.3E-23 9.2E-28 155.7 14.6 128 32-159 4-145 (159)
21 PRK11563 bifunctional aldehyde 99.9 2.8E-23 6E-28 186.8 13.3 143 7-157 519-672 (675)
22 PF13452 MaoC_dehydrat_N: N-te 99.6 2.4E-15 5.2E-20 109.1 6.0 115 35-151 2-131 (132)
23 cd01288 FabZ FabZ is a 17kD be 98.9 2.6E-08 5.7E-13 71.5 12.0 92 66-157 28-129 (131)
24 COG3777 Uncharacterized conser 98.9 1.8E-09 3.8E-14 85.7 5.7 103 47-154 167-271 (273)
25 PRK00006 fabZ (3R)-hydroxymyri 98.9 3E-08 6.6E-13 73.2 11.8 92 67-158 44-144 (147)
26 PRK04424 fatty acid biosynthes 98.9 4E-08 8.6E-13 75.8 12.2 79 79-158 100-181 (185)
27 PRK13188 bifunctional UDP-3-O- 98.7 5E-07 1.1E-11 78.5 13.1 120 36-159 330-460 (464)
28 PLN02864 enoyl-CoA hydratase 98.6 3.5E-07 7.5E-12 75.9 10.3 124 33-157 11-154 (310)
29 TIGR01750 fabZ beta-hydroxyacy 98.5 3.7E-06 7.9E-11 61.5 11.2 81 77-157 46-139 (140)
30 cd00493 FabA_FabZ FabA/Z, beta 98.4 9.8E-06 2.1E-10 57.8 12.6 88 69-156 30-129 (131)
31 TIGR01749 fabA beta-hydroxyacy 98.1 5.7E-05 1.2E-09 57.6 11.4 97 66-162 58-168 (169)
32 TIGR02286 PaaD phenylacetic ac 98.1 8.4E-05 1.8E-09 52.4 11.5 78 80-157 30-112 (114)
33 PRK05174 3-hydroxydecanoyl-(ac 98.1 0.00013 2.7E-09 55.8 12.2 85 78-162 73-171 (172)
34 cd03440 hot_dog The hotdog fol 98.1 0.0002 4.4E-09 45.4 11.3 78 79-156 14-99 (100)
35 cd01289 FabA_like Domain of un 97.9 0.00027 5.8E-09 51.9 11.5 80 81-160 45-138 (138)
36 PF07977 FabA: FabA-like domai 97.9 0.00023 4.9E-09 51.9 11.1 77 77-153 43-138 (138)
37 PF03061 4HBT: Thioesterase su 97.9 0.00026 5.5E-09 45.8 10.1 69 82-150 3-79 (79)
38 COG0764 FabA 3-hydroxymyristoy 97.9 0.00028 6.1E-09 52.6 10.5 82 77-158 51-143 (147)
39 cd03443 PaaI_thioesterase PaaI 97.7 0.0014 3E-08 45.2 11.2 75 82-157 30-112 (113)
40 cd01287 FabA FabA, beta-hydrox 97.5 0.0015 3.3E-08 48.7 10.4 79 76-154 44-142 (150)
41 cd00586 4HBT 4-hydroxybenzoyl- 97.5 0.0055 1.2E-07 41.1 11.6 52 106-157 52-107 (110)
42 cd03445 Thioesterase_II_repeat 97.4 0.0055 1.2E-07 42.0 11.3 77 79-157 14-93 (94)
43 TIGR00369 unchar_dom_1 unchara 97.4 0.0044 9.5E-08 43.6 10.5 75 82-157 34-116 (117)
44 cd03442 BFIT_BACH Brown fat-in 97.2 0.015 3.2E-07 40.5 11.6 78 82-159 24-113 (123)
45 PRK11688 hypothetical protein; 97.2 0.01 2.3E-07 44.1 11.2 77 80-157 55-152 (154)
46 COG2050 PaaI HGG motif-contain 97.2 0.011 2.4E-07 43.2 11.1 81 79-160 49-138 (141)
47 PF13622 4HBT_3: Thioesterase- 97.1 0.015 3.3E-07 46.1 12.3 80 80-161 9-91 (255)
48 PRK10293 acyl-CoA esterase; Pr 97.1 0.014 3.1E-07 42.7 10.8 77 80-157 50-134 (136)
49 PRK10800 acyl-CoA thioesterase 97.0 0.0077 1.7E-07 43.1 8.9 52 106-157 54-109 (130)
50 cd00556 Thioesterase_II Thioes 97.0 0.016 3.5E-07 38.9 10.0 77 80-156 14-97 (99)
51 PLN02322 acyl-CoA thioesterase 97.0 0.024 5.1E-07 42.6 11.7 77 81-157 43-132 (154)
52 PRK10254 thioesterase; Provisi 97.0 0.022 4.9E-07 41.8 11.3 77 80-157 50-134 (137)
53 PF12119 DUF3581: Protein of u 96.9 0.0039 8.4E-08 48.8 6.6 67 47-129 15-82 (218)
54 TIGR00189 tesB acyl-CoA thioes 96.9 0.014 3.1E-07 46.9 10.2 79 81-161 21-102 (271)
55 COG0824 FcbC Predicted thioest 96.8 0.016 3.6E-07 42.3 9.0 51 107-157 58-111 (137)
56 TIGR02799 thio_ybgC tol-pal sy 96.7 0.02 4.3E-07 40.3 9.0 51 107-157 54-107 (126)
57 COG5496 Predicted thioesterase 96.6 0.11 2.3E-06 37.8 12.0 83 73-155 22-110 (130)
58 PRK10526 acyl-CoA thioesterase 96.5 0.048 1E-06 44.7 11.0 81 79-161 30-113 (286)
59 PF13279 4HBT_2: Thioesterase- 95.9 0.14 2.9E-06 35.8 9.5 52 106-157 44-102 (121)
60 PRK10694 acyl-CoA esterase; Pr 95.7 0.42 9.2E-06 34.8 11.7 60 82-141 28-93 (133)
61 TIGR00051 acyl-CoA thioester h 95.6 0.15 3.3E-06 35.0 8.8 48 107-154 50-101 (117)
62 TIGR02447 yiiD_Cterm thioester 95.3 0.4 8.6E-06 35.0 10.4 76 82-157 39-135 (138)
63 KOG3328 HGG motif-containing t 94.7 0.54 1.2E-05 35.0 9.4 80 82-161 55-143 (148)
64 COG1607 Acyl-CoA hydrolase [Li 94.6 0.92 2E-05 34.2 10.7 77 82-159 30-119 (157)
65 PRK07531 bifunctional 3-hydrox 94.1 0.41 9E-06 42.2 9.2 51 107-157 397-451 (495)
66 PLN02868 acyl-CoA thioesterase 94.1 0.5 1.1E-05 40.6 9.5 79 81-161 158-239 (413)
67 PF03756 AfsA: A-factor biosyn 90.8 3.9 8.4E-05 29.2 9.2 51 107-157 73-131 (132)
68 PLN02647 acyl-CoA thioesterase 89.3 8.4 0.00018 33.7 11.5 25 107-131 334-359 (437)
69 PF14539 DUF4442: Domain of un 87.9 8.1 0.00018 27.7 9.8 46 109-156 78-130 (132)
70 COG1946 TesB Acyl-CoA thioeste 85.8 5.7 0.00012 32.8 8.0 80 79-160 30-112 (289)
71 PF09500 YiiD_Cterm: Putative 84.2 11 0.00023 28.0 8.2 51 107-157 77-141 (144)
72 PLN02370 acyl-ACP thioesterase 79.8 19 0.00042 31.3 9.3 51 107-157 198-253 (419)
73 PLN02647 acyl-CoA thioesterase 79.7 42 0.00091 29.4 11.5 47 112-158 151-208 (437)
74 PF01643 Acyl-ACP_TE: Acyl-ACP 77.2 24 0.00051 28.3 8.7 80 77-157 173-260 (261)
75 KOG3016 Acyl-CoA thioesterase 68.7 58 0.0012 27.1 9.0 79 78-158 35-116 (294)
76 PF10989 DUF2808: Protein of u 67.0 24 0.00051 25.9 6.0 39 109-147 89-132 (146)
77 PF02551 Acyl_CoA_thio: Acyl-C 65.3 44 0.00095 24.4 6.9 42 112-153 81-127 (131)
78 KOG4781 Uncharacterized conser 64.8 22 0.00048 28.5 5.7 65 76-141 138-208 (237)
79 PF01643 Acyl-ACP_TE: Acyl-ACP 62.9 60 0.0013 25.9 8.1 52 106-157 61-117 (261)
80 PLN02370 acyl-ACP thioesterase 60.4 95 0.0021 27.1 9.3 53 106-158 340-402 (419)
81 cd03444 Thioesterase_II_repeat 53.9 68 0.0015 21.8 7.0 44 110-153 52-99 (104)
82 PF14765 PS-DH: Polyketide syn 52.6 1.1E+02 0.0025 24.0 11.3 78 78-158 36-126 (295)
83 COG4109 Predicted transcriptio 39.7 1.5E+02 0.0033 25.6 7.1 73 80-153 348-425 (432)
84 TIGR00189 tesB acyl-CoA thioes 38.4 1.5E+02 0.0033 23.4 6.8 44 110-153 218-265 (271)
85 KOG2763 Acyl-CoA thioesterase 37.2 75 0.0016 27.2 4.9 25 107-131 243-268 (357)
86 PF14765 PS-DH: Polyketide syn 36.9 1.5E+02 0.0033 23.3 6.6 43 111-153 235-282 (295)
87 COG3884 FatA Acyl-ACP thioeste 34.0 60 0.0013 26.2 3.6 26 107-132 192-217 (250)
88 PF06059 DUF930: Domain of Unk 31.4 1.1E+02 0.0024 21.3 4.2 46 112-157 36-86 (101)
89 PF14230 DUF4333: Domain of un 28.7 1.5E+02 0.0032 19.4 4.3 33 110-142 43-75 (80)
90 PHA00098 hypothetical protein 28.4 25 0.00054 24.5 0.5 30 46-75 29-63 (112)
91 PRK10526 acyl-CoA thioesterase 27.4 2.7E+02 0.0059 22.6 6.6 44 110-153 230-277 (286)
92 PF04225 OapA: Opacity-associa 27.3 1.3E+02 0.0029 19.9 4.0 28 116-143 40-67 (85)
93 COG1946 TesB Acyl-CoA thioeste 26.4 3E+02 0.0066 22.8 6.6 39 112-151 232-275 (289)
94 PF07703 A2M_N_2: Alpha-2-macr 24.7 2.3E+02 0.005 19.6 5.2 37 117-155 8-46 (136)
95 PF10648 Gmad2: Immunoglobulin 24.7 1.6E+02 0.0034 19.7 4.0 35 121-156 10-50 (88)
96 PF13598 DUF4139: Domain of un 23.0 4.1E+02 0.0089 21.5 8.5 50 111-160 260-317 (317)
97 PLN02868 acyl-CoA thioesterase 22.4 2.5E+02 0.0055 24.0 5.8 43 111-153 362-408 (413)
98 PF13622 4HBT_3: Thioesterase- 21.4 3.9E+02 0.0084 20.6 8.1 46 109-154 201-251 (255)
99 COG3777 Uncharacterized conser 21.3 1.3E+02 0.0028 24.6 3.5 49 110-158 82-141 (273)
No 1
>PLN02864 enoyl-CoA hydratase
Probab=100.00 E-value=2.3e-34 Score=237.38 Aligned_cols=162 Identities=80% Similarity=1.251 Sum_probs=147.1
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccCCCccccCCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCc
Q 031259 2 NRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRP 81 (163)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~ 81 (163)
+++|+|+||+||||+++.|+...++-...+++.++|++.|++.....++.++.+||++|||+||||+|++||+..||+++
T Consensus 149 ~~st~~~Rg~gg~g~~~~~~~~~~~~~~~~~~~~~p~~~pd~~~~~~t~~~~~~~a~lSGD~NPiH~d~~~A~~~gf~~~ 228 (310)
T PLN02864 149 NRSTIFLRGAGGFSNSSQPFSYSNYPTNQVSAVKIPKSQPDAVFEDQTQPSQALLYRLSGDYNPLHSDPMFAKVAGFTRP 228 (310)
T ss_pred EEEEEEEeCCCCCCCCCCCccccccccccccccCCCCCCCCeEEeeccChhHHHHHHhhCCCCcccCCHHHHhhCCCCCc
Confidence 58999999999999998886544444555667889999999999999999999999999999999999999999999999
Q ss_pred eechHHHHHHHHHHHHHHhccCCCceeeEEEEEEccccCCCCeEEEEEEEECcEEEEEEEEecCCeEEEEEEEEEEecCC
Q 031259 82 ILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQGLRVIYQVKVKERNRSALSGFVDVHRLAS 161 (163)
Q Consensus 82 iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf~~PV~~Gd~l~~~~~v~~g~v~~~~~~~q~g~~v~~g~a~v~~p~~ 161 (163)
|+||||+++++.+++.++..++++..+.++++||.+||++||+|+++.|..++++.++++++|+|++|++|.+++..+.+
T Consensus 229 IaHGm~t~g~~~~~~~~~~~~~~~~~~~~~~~rF~~PV~pGdtl~~~~~~~~~~v~~~~~~~~~g~~vl~G~a~~~~~~~ 308 (310)
T PLN02864 229 ILHGLCTLGFAVRAVIKCFCNGDPTAVKTISGRFLLHVYPGETLVTEMWLEGLRVIYQTKVKERNKAVLSGYVDLRHLTS 308 (310)
T ss_pred eeccHHHHHHHHHHHHhhhcCCCCceEEEEEEEEcCCccCCCEEEEEEEeCCCEEEEEEEEecCCeEEEEEEEEEecccC
Confidence 99999999999999888877777778889999999999999999999998888999999888999999999999999988
Q ss_pred CC
Q 031259 162 SL 163 (163)
Q Consensus 162 ~~ 163 (163)
+|
T Consensus 309 ~~ 310 (310)
T PLN02864 309 SL 310 (310)
T ss_pred CC
Confidence 86
No 2
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=99.97 E-value=3.7e-29 Score=181.96 Aligned_cols=117 Identities=24% Similarity=0.334 Sum_probs=104.0
Q ss_pred eeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhccCCCceeeEEEEEEccccCCC
Q 031259 43 AVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPG 122 (163)
Q Consensus 43 ~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf~~PV~~G 122 (163)
+...+.|++|+..|+.+|||+||||+|++||++.||+++|+|||++++++.+++..++.+++...+.++++||++||++|
T Consensus 5 ~~~~~~t~~d~~~fa~lsGD~nPiH~D~~~A~~~g~~~~iahG~l~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~PV~~g 84 (126)
T cd03447 5 ASLTITAPASNEPYARVSGDFNPIHVSRVFASYAGLPGTITHGMYTSAAVRALVETWAADNDRSRVRSFTASFVGMVLPN 84 (126)
T ss_pred ceEEEEChHHHHHHHHHhCCCCccCCCHHHHHHcCCCCCeechhHHHHHHHHHHHHhccCCCcceEEEEEEEEcccCcCC
Confidence 35567899999999999999999999999999999999999999999999998877764446667788999999999999
Q ss_pred CeEEEEEEEE---CcEEEEEEEE-ecC-CeEEEEEEEEEEec
Q 031259 123 ETLVTEMWLQ---GLRVIYQVKV-KER-NRSALSGFVDVHRL 159 (163)
Q Consensus 123 d~l~~~~~v~---~g~v~~~~~~-~q~-g~~v~~g~a~v~~p 159 (163)
|+|++++++. .+.+++++++ ||+ |++|++|++++.+|
T Consensus 85 dtl~~~~~v~~~~~~~~~~~~~~~nq~~g~~V~~g~~~v~~p 126 (126)
T cd03447 85 DELEVRLEHVGMVDGRKVIKVEARNEETGELVLRGEAEVEQP 126 (126)
T ss_pred CEEEEEEEEEEEeCCeEEEEEEEEECCCCCEEEEEEEEEeCC
Confidence 9999999983 4677777774 888 99999999999987
No 3
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=99.96 E-value=1.3e-28 Score=178.65 Aligned_cols=119 Identities=25% Similarity=0.310 Sum_probs=106.5
Q ss_pred CCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhccCCCceeeEEEEEE
Q 031259 36 IPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRF 115 (163)
Q Consensus 36 vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf 115 (163)
+|+++|... ++++++++..|++++||+||||+|++||++.||+++|+||+++++++.+++.+|+ .++..+.++++||
T Consensus 1 vG~~~~~~~-~~vt~~~i~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~~~~~~~~~~~~--~~~~~i~~~~~rf 77 (127)
T cd03453 1 VGDELPPLT-PPVSRADLVRYAGASGDFNPIHYDEDFAKKVGLPGVIAHGMLTMGLLGRLVTDWV--GDPGRVVSFGVRF 77 (127)
T ss_pred CCccCCcee-eecCHHHHHHHHHhhcCCCccccCHHHHHHcCCCCcEecHHHHHHHHHHHHHHHc--CCccceEEEEEEE
Confidence 688998885 7899999999999999999999999999999999999999999999999888876 2455677889999
Q ss_pred ccccCCCCeEEEEEEEE-------CcEEEEEEE-EecCCeEEEEEEEEEE
Q 031259 116 LLHVYPGETLVTEMWLQ-------GLRVIYQVK-VKERNRSALSGFVDVH 157 (163)
Q Consensus 116 ~~PV~~Gd~l~~~~~v~-------~g~v~~~~~-~~q~g~~v~~g~a~v~ 157 (163)
++||++||+|+++.++. .++++++++ .||+|++|++|++++.
T Consensus 78 ~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~nq~g~~v~~g~a~v~ 127 (127)
T cd03453 78 TKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATDQAGGKKVLGRAIVA 127 (127)
T ss_pred CCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEEcCCCEEEEEEEEEC
Confidence 99999999999999882 157889988 4899999999999873
No 4
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=99.96 E-value=1.2e-28 Score=182.41 Aligned_cols=125 Identities=19% Similarity=0.154 Sum_probs=106.3
Q ss_pred ccccCCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhccCCCcee--
Q 031259 31 VSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMV-- 108 (163)
Q Consensus 31 ~~~~~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~-- 108 (163)
+||+++|+.++... ++++++++..|+.++||+||||+|++||++.+|+++|+||+++++++.+++..+. ++..+
T Consensus 2 ~ed~~vG~~~~~~~-~tvt~~~i~~Fa~~tgD~nPiH~D~e~A~~~~fg~~ia~G~l~~s~~~~l~~~~~---~~~~~~~ 77 (142)
T cd03452 2 LEQLRPGDSLLTHR-RTVTEADIVNFACLTGDHFYAHMDEIAAKASFFGKRVAHGYFVLSAAAGLFVDPA---PGPVLAN 77 (142)
T ss_pred ccccCCCCEEeeCC-EEEcHHHHHHHHHhhCCCCccccCHHHHhhCCCCCeeecHHHHHHHHhhhCccCC---cccEEEE
Confidence 48999999986544 5799999999999999999999999999999999999999999999988775543 22232
Q ss_pred -eEEEEEEccccCCCCeEEEEEEEE-----C----cEEEEEEE-EecCCeEEEEEEEEEEec
Q 031259 109 -KNIFSRFLLHVYPGETLVTEMWLQ-----G----LRVIYQVK-VKERNRSALSGFVDVHRL 159 (163)
Q Consensus 109 -~~~~~rf~~PV~~Gd~l~~~~~v~-----~----g~v~~~~~-~~q~g~~v~~g~a~v~~p 159 (163)
..+++||++||++||+|++++++. . ++++++++ .||+|++|++++.++..+
T Consensus 78 ~g~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~g~~V~~~~~~~~~~ 139 (142)
T cd03452 78 YGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTNQNGELVASYDILTLVA 139 (142)
T ss_pred eccceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEecCCCEEEEEEehHeeE
Confidence 346999999999999999999882 1 47888888 489999999999877654
No 5
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=99.96 E-value=1.4e-27 Score=172.20 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=104.2
Q ss_pred CCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhccCCCceeeEEEEEEc
Q 031259 37 PKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFL 116 (163)
Q Consensus 37 g~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf~ 116 (163)
|+.+|.... +++++++..|+++++|+||||+|++||++.||+++|+||+++++++.+++.+|+ +++..+.++++||+
T Consensus 1 g~~~~~~~~-~vt~~~i~~fa~~s~D~~piH~D~~~A~~~g~~~~ia~G~~~~~~~~~~~~~~~--~~~~~~~~~~~rf~ 77 (123)
T cd03455 1 GDELPRLSI-PPDPTLLFRYSAATRDFHRIHHDRDYARAVGYPDLYVNGPTLAGLVIRYVTDWA--GPDARVKSFAFRLG 77 (123)
T ss_pred CCcCCcEEe-cCCHHHHHHHHhhcCCCCcccCCHHHHHhcCCCceEEEHHHHHHHHHHHHHHcc--CCcceEEEEEEEee
Confidence 567777654 799999999999999999999999999999999999999999999999888775 34567788999999
Q ss_pred cccCCCCeEEEEEEEEC---c-EEEEEEEE-ecCCeEEEEEEEEEE
Q 031259 117 LHVYPGETLVTEMWLQG---L-RVIYQVKV-KERNRSALSGFVDVH 157 (163)
Q Consensus 117 ~PV~~Gd~l~~~~~v~~---g-~v~~~~~~-~q~g~~v~~g~a~v~ 157 (163)
+||++||+|+++.++.+ + ++++++++ ||+|++|++|++++.
T Consensus 78 ~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~nq~G~~v~~g~a~v~ 123 (123)
T cd03455 78 APLYAGDTLRFGGRVTAKRDDEVVTVELWARNSEGDHVMAGTATVA 123 (123)
T ss_pred ccccCCCEEEEEEEEEeeccCcEEEEEEEEEcCCCCEEEeEEEEEC
Confidence 99999999999999832 2 77888884 899999999999873
No 6
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=99.96 E-value=3.4e-28 Score=179.42 Aligned_cols=131 Identities=18% Similarity=0.104 Sum_probs=110.4
Q ss_pred ccccCCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhccCCCceeeE
Q 031259 31 VSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKN 110 (163)
Q Consensus 31 ~~~~~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~ 110 (163)
+|++++|++++....++++++++..|++++||+||+|+|++||++.+|+++|+||+++++++.+++..+........+..
T Consensus 4 ~~~~~vG~~~~~~~~~tvt~~~i~~fa~~~gd~~piH~D~~~a~~~~~~~~ia~G~l~~~~~~~~~~~~~~~~~~~~~~~ 83 (146)
T cd03451 4 FEDFTVGQVFEHAPGRTVTEADNVLFTLLTMNTAPLHFDAAYAAKTEFGRRLVNSLFTLSLALGLSVNDTSLTAVANLGY 83 (146)
T ss_pred cccCCCccEEecCCCeEEcHHHHHHHHHhhCCCCccccCHHHHhhCCCCCccccHHhHHHHHhhheehhccccceeccCc
Confidence 48999999998666678999999999999999999999999999999999999999999998776655542112223334
Q ss_pred EEEEEccccCCCCeEEEEEEEE----C------cEEEEEEEE-ecCCeEEEEEEEEEEecCC
Q 031259 111 IFSRFLLHVYPGETLVTEMWLQ----G------LRVIYQVKV-KERNRSALSGFVDVHRLAS 161 (163)
Q Consensus 111 ~~~rf~~PV~~Gd~l~~~~~v~----~------g~v~~~~~~-~q~g~~v~~g~a~v~~p~~ 161 (163)
.+++|++||++||+|+++.++. . +++++++++ ||+|++|++|++++..|+.
T Consensus 84 ~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~V~~~~~~~~~~~~ 145 (146)
T cd03451 84 DEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQDGEPVLSFERTALVPKR 145 (146)
T ss_pred cEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECCCCCEEEEEEehhEEEcC
Confidence 5999999999999999998882 1 478899885 8999999999999987764
No 7
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=99.95 E-value=4.8e-27 Score=170.03 Aligned_cols=117 Identities=61% Similarity=0.931 Sum_probs=103.4
Q ss_pred CCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhccCCCceeeEEEEEEc
Q 031259 37 PKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFL 116 (163)
Q Consensus 37 g~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf~ 116 (163)
|++.|++++..-+..++..++++|||+||||+|++||++.||+++|+||+++++++.+++.+++.++.+..+..+++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~SgD~nPiH~d~e~A~~~g~~~~iahG~~t~a~~~~~~~~~~~~~~~~~~~~~~~rF~ 80 (122)
T cd03448 1 PDRAPDAVVEIPTSPDQALLYRLSGDYNPLHIDPAFAKAAGFPRPILHGLCTYGFAARAVLEAFADGDPARFKAIKVRFS 80 (122)
T ss_pred CCCCCCEEEEecCCcChHHHHHHhCCCCccccCHHHHHHcCCCCceehhHHHHHHHHHHHHHHhcCCCcceeEEEEEEEc
Confidence 46778999877777777777788999999999999999999999999999999999998888876666777888999999
Q ss_pred cccCCCCeEEEEEEEECcEEEEEEEEecCCeEEEEEE
Q 031259 117 LHVYPGETLVTEMWLQGLRVIYQVKVKERNRSALSGF 153 (163)
Q Consensus 117 ~PV~~Gd~l~~~~~v~~g~v~~~~~~~q~g~~v~~g~ 153 (163)
+||++||+|+++.++.++.++++++++++|++|++|.
T Consensus 81 ~PV~~gDtl~~~~~~~~~~v~~~~~~~~~g~~v~~g~ 117 (122)
T cd03448 81 SPVFPGETLRTEMWKEGNRVIFQTKVVERDVVVLSNG 117 (122)
T ss_pred CCccCCCEEEEEEEEeCCEEEEEEEEccCCcEEEECC
Confidence 9999999999999988888999998766888877754
No 8
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=99.95 E-value=1.1e-26 Score=172.19 Aligned_cols=124 Identities=25% Similarity=0.322 Sum_probs=103.3
Q ss_pred ccccCCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhccCCCceeeE
Q 031259 31 VSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKN 110 (163)
Q Consensus 31 ~~~~~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~ 110 (163)
+||+++|+++|... +++|++++..|+.++||+||||+|++||++.||+++|+||+++++++.+++.+|. +.+..+.+
T Consensus 6 ~ed~~vG~~~~~~~-~tvt~~di~~FA~~sgD~nPiH~D~~~A~~~g~~~~iahG~~~~a~~~~~~~~~~--~~~~~~~~ 82 (142)
T PRK13693 6 FSSVKVGDQLPEKT-YPLTRQDLVNYAGVSGDLNPIHWDDEIAKVVGLDTAIAHGMLTMGLGGGYVTSWV--GDPGAVTE 82 (142)
T ss_pred HhHcCCCCCcCccc-eeeCHHHHHHHHHHhCCCCccccCHHHHHhcCCCCcEecHHHHHHHHHHHHHHhc--CCCcceEE
Confidence 48999999998665 5799999999999999999999999999999999999999999999999888875 34455678
Q ss_pred EEEEEccccCCC-C----eEEEEEEEE-----CcEEEEEEEEec-CCeEEEEEEEEEE
Q 031259 111 IFSRFLLHVYPG-E----TLVTEMWLQ-----GLRVIYQVKVKE-RNRSALSGFVDVH 157 (163)
Q Consensus 111 ~~~rf~~PV~~G-d----~l~~~~~v~-----~g~v~~~~~~~q-~g~~v~~g~a~v~ 157 (163)
+++||++||++| | +|++++++. .+.+++++++.+ +++.+..|++++.
T Consensus 83 ~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 140 (142)
T PRK13693 83 YNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATTGGKKIFGRAIASAK 140 (142)
T ss_pred EEEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEEEEEEECCcEEEEEEEEEEE
Confidence 899999999964 4 888888873 257888888644 4444556666664
No 9
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=99.95 E-value=6.2e-27 Score=171.56 Aligned_cols=124 Identities=25% Similarity=0.273 Sum_probs=104.3
Q ss_pred ccccCCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhccCCCc---e
Q 031259 31 VSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPN---M 107 (163)
Q Consensus 31 ~~~~~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~~g~~~---~ 107 (163)
|||+++|++++.. .+++|++++..|+.++||+||+|+|+++|++.||+++|+||+++++++.+++..+. +... .
T Consensus 2 ~ed~~vG~~~~~~-~~tvt~~~i~~fa~~~gD~np~H~D~~~A~~~~~~~~ia~G~~~~a~~~~~~~~~~--~~~~~~~~ 78 (140)
T cd03446 2 FEDFEIGQVFESV-GRTVTEADVVMFAGLSGDWNPIHTDAEYAKKTRFGERIAHGLLTLSIATGLLQRLG--VFERTVVA 78 (140)
T ss_pred cccccCCCEeccC-CEEECHHHHHHHHHhhCCCcccccCHHHHccCCCCCceeccccHHHHHhhHhhhcc--cccceeeE
Confidence 4899999999754 36899999999999999999999999999999999999999999999988765432 2211 2
Q ss_pred e-eEEEEEEccccCCCCeEEEEEEEE---------CcEEEEEEE-EecCCeEEEEEEEEEE
Q 031259 108 V-KNIFSRFLLHVYPGETLVTEMWLQ---------GLRVIYQVK-VKERNRSALSGFVDVH 157 (163)
Q Consensus 108 ~-~~~~~rf~~PV~~Gd~l~~~~~v~---------~g~v~~~~~-~~q~g~~v~~g~a~v~ 157 (163)
+ ...++||++||++||+|+++.++. .++++++++ .||+|++|++|++++.
T Consensus 79 ~~g~~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq~g~~v~~~~~~~l 139 (140)
T cd03446 79 FYGIDNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQRGEVVQSGEMSLL 139 (140)
T ss_pred EeccceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCEEEEEEEeee
Confidence 2 234999999999999999999882 147888888 4899999999998874
No 10
>KOG1206 consensus Peroxisomal multifunctional beta-oxidation protein and related enzymes [Lipid transport and metabolism]
Probab=99.95 E-value=5.6e-28 Score=188.63 Aligned_cols=143 Identities=43% Similarity=0.685 Sum_probs=126.3
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccCCCccccCCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCC
Q 031259 1 MNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSR 80 (163)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~ 80 (163)
||.++.|++|.|.+++++.+..-. -.+++|++-|+++.+..|.+|+.+||+++||+||||+||+.|+++||+.
T Consensus 119 ~~~~stf~~g~~~~~~k~~~~~~~-------~av~~p~r~pd~~v~~~ts~DqaAlyrlsgD~NPLHiDPe~A~~agFet 191 (272)
T KOG1206|consen 119 YNQGSTFIRGAGVFGGKRDGKRAK-------KAVQVPHRDPDAVVERFTSEDQAALYRLSGDHNPLHIDPESALEAGFET 191 (272)
T ss_pred hhcCceeEecccccCccccchhhe-------eeccCCCcCcchheeecchhhHHHHHHhcCCCCccccCHHHHHhcCCCC
Confidence 578999999999999998775432 3677999999999999999999999999999999999999999999999
Q ss_pred ceechHHHHHHHHHHHHHHhccCCCceeeEEEEEEccccCCCCeEEEEEEEECcEEEEEEEEecCCeEEEEEE
Q 031259 81 PILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQGLRVIYQVKVKERNRSALSGF 153 (163)
Q Consensus 81 ~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf~~PV~~Gd~l~~~~~v~~g~v~~~~~~~q~g~~v~~g~ 153 (163)
+|+||+|++++..+.+...+ +++.+..+++||+.||+|||+|....|..+.+++++..+...++.|+++.
T Consensus 192 pilHGlc~lg~~~riv~a~~---~~a~y~~~kvrF~spV~pGdtll~~~wK~g~r~~fqt~vv~t~~~v~sna 261 (272)
T KOG1206|consen 192 PILHGLCTLGFSARIVGAQF---PPAVYKAQKVRFSSPVGPGDTLLVLVWKQGLRITFQTYVVETGKIVISNA 261 (272)
T ss_pred chhhhHHHhhhhHHHHHHhc---CchhhheeeeeecCCCCCchhHHHHHHhhhceeEEEEEEEEEEEEEeecc
Confidence 99999999999999888766 46788899999999999999999988888878888776555677777643
No 11
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=99.95 E-value=9.9e-27 Score=175.37 Aligned_cols=129 Identities=25% Similarity=0.360 Sum_probs=114.1
Q ss_pred ccccCCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhh-CCCCCceechHHHHHHHHHHHHHHhccC-CCcee
Q 031259 31 VSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKA-AGFSRPILHGLCTMGFAVRAIIKFICRG-DPNMV 108 (163)
Q Consensus 31 ~~~~~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~-~g~~~~iv~G~l~~a~~~~~l~~~~~~g-~~~~~ 108 (163)
++++.+|+.++...+++++++++..|++++||+||||+|+++|++ .+|+++|+|||++++++.+++..+.... .+..+
T Consensus 17 ~~~~~vG~~~~~~~~~~~t~~d~~~fa~~tgD~qpiH~D~e~A~~~~~fg~~iahG~~t~a~~~~~~~~~~~~~~~~~~~ 96 (159)
T COG2030 17 FEDFEVGQVFPHSPWRTVTEADIVLFAAVTGDPNPIHLDPEAAKKTSGFGGPIAHGMLTLALAMGLVVAALGDPSVGANL 96 (159)
T ss_pred hhhccCCcEEecCCceEecHHHHHHHHHhcCCCCceecCHHHHhccCCCCCEehhHHHHHHHHHHHHHHhccCcceeeec
Confidence 489999999889888999999999999999999999999999999 5999999999999999999988866322 13466
Q ss_pred eEEEEEEccccCCCCeEEEEEEEEC-------cEEEEEEE-EecCCeEEEEEEEEEEec
Q 031259 109 KNIFSRFLLHVYPGETLVTEMWLQG-------LRVIYQVK-VKERNRSALSGFVDVHRL 159 (163)
Q Consensus 109 ~~~~~rf~~PV~~Gd~l~~~~~v~~-------g~v~~~~~-~~q~g~~v~~g~a~v~~p 159 (163)
...++||++||++||+|+++.++.+ |+++++.+ .||+|+.++.+++++..+
T Consensus 97 g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~~~~g~~v~~~~~~~~~~ 155 (159)
T COG2030 97 GGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETVNQEGELVLTLEATVLVL 155 (159)
T ss_pred cccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEEccCCcEEEEEEEeEeEe
Confidence 7789999999999999999999842 78899888 599999999999887655
No 12
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=99.94 E-value=5.8e-26 Score=163.24 Aligned_cols=121 Identities=25% Similarity=0.339 Sum_probs=104.8
Q ss_pred cCCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhccCCCceeeEEEE
Q 031259 34 VKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFS 113 (163)
Q Consensus 34 ~~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~ 113 (163)
+++|+.+ .. .++++++++..|++++||+||||+|++||+..||+++|+||+++++++.+++..+. +++.....++++
T Consensus 1 ~~~G~~~-~~-~~tv~~~~~~~fa~~~gd~npiH~D~~~A~~~g~~~~i~~g~~~~~~~~~~~~~~~-~g~~~~~~~~~~ 77 (128)
T cd03449 1 LKVGDSA-SL-TRTITEEDVELFAELSGDFNPIHLDEEYAKKTRFGGRIAHGMLTASLISAVLGTLL-PGPGTIYLSQSL 77 (128)
T ss_pred CCCCCEE-EE-EEEEcHHHHHHHHHHhCCCCCccCCHHHHhhCCCCCceecHHHHHHHHHHHHhccC-CCceEEEEEEEE
Confidence 4688887 44 46899999999999999999999999999999999999999999999988776653 445555667899
Q ss_pred EEccccCCCCeEEEEEEEE---C--cEEEEEEEE-ecCCeEEEEEEEEEE
Q 031259 114 RFLLHVYPGETLVTEMWLQ---G--LRVIYQVKV-KERNRSALSGFVDVH 157 (163)
Q Consensus 114 rf~~PV~~Gd~l~~~~~v~---~--g~v~~~~~~-~q~g~~v~~g~a~v~ 157 (163)
||++||++||+|++++++. + +.+++++++ ||+|++|++|++++.
T Consensus 78 ~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~~~g~~v~~g~~~~~ 127 (128)
T cd03449 78 RFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTNQNGEVVIEGEAVVL 127 (128)
T ss_pred EECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEeCCCCEEEEEEEEEe
Confidence 9999999999999999883 3 678888884 788999999999875
No 13
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=99.94 E-value=9e-26 Score=165.77 Aligned_cols=125 Identities=20% Similarity=0.102 Sum_probs=103.2
Q ss_pred ccccCCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhccCC-Ccee-
Q 031259 31 VSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGD-PNMV- 108 (163)
Q Consensus 31 ~~~~~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~~g~-~~~~- 108 (163)
|||+++|+.++.. .++++++++..|+.+ +|+||||+|++||++.+|+++|+||+++++++.+++.+....+. ....
T Consensus 1 ~ed~~vG~~~~~~-~~~vt~~~v~~Fa~~-~D~npih~D~e~A~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (140)
T cd03454 1 FEDLVIGQRFTSG-SYTVTEEEIIAFARE-FDPQPFHLDEEAAKESLFGGLAASGWHTAAITMRLLVDAGLSGSASGGSP 78 (140)
T ss_pred CCcCCCccEEEeC-CEEEcHHHHHHHHHc-cCCCccCcCHHHHhcCCCCCeeechHHHHHHHHHhhhhhccccceEEEEc
Confidence 4799999998764 357999999999997 99999999999999999999999999999999877654332221 1222
Q ss_pred eEEEEEEccccCCCCeEEEEEEEE----------CcEEEEEEEE-ecCCeEEEEEEEEEE
Q 031259 109 KNIFSRFLLHVYPGETLVTEMWLQ----------GLRVIYQVKV-KERNRSALSGFVDVH 157 (163)
Q Consensus 109 ~~~~~rf~~PV~~Gd~l~~~~~v~----------~g~v~~~~~~-~q~g~~v~~g~a~v~ 157 (163)
..++++|++||++||+|+++.++. .+++++++++ ||+|++|++|++++.
T Consensus 79 ~~~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~v~~~~~~~~ 138 (140)
T cd03454 79 GIDELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLNQRGEVVLTFEATVL 138 (140)
T ss_pred ceeeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEcCCCCEEEEEEehhe
Confidence 235999999999999999999882 1478888885 899999999998764
No 14
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=99.93 E-value=3e-25 Score=192.06 Aligned_cols=129 Identities=20% Similarity=0.271 Sum_probs=113.2
Q ss_pred ccccCCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhccCCCceeeE
Q 031259 31 VSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKN 110 (163)
Q Consensus 31 ~~~~~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~ 110 (163)
|||+++|+++. ..+++|++++..|+.++||+||||+|++||+..||+++|+||+++++++.+++..++ ++++.....
T Consensus 11 fedl~vG~~~~--~~rtvT~~di~~FA~lsGD~nPiH~D~e~Ak~sgfg~~IahG~l~~s~~~~l~~~~~-~g~~~~~~~ 87 (466)
T PRK08190 11 FDEIAIGDSAS--LVRTLTPDDIELFAAMSGDVNPAHLDAAYAASDGFHHVVAHGMWGGALISAVLGTRL-PGPGTIYLG 87 (466)
T ss_pred HhhcCCCCEEe--eeEEecHHHHHHHHHHhCCCCCCCcCHHHHHhCCCCCceeCHHHHHHHHHHHHhhhC-CCcceEEEE
Confidence 49999999973 346899999999999999999999999999999999999999999999988776654 455566678
Q ss_pred EEEEEccccCCCCeEEEEEEEE-----CcEEEEEEE-EecCCeEEEEEEEEEEecCCC
Q 031259 111 IFSRFLLHVYPGETLVTEMWLQ-----GLRVIYQVK-VKERNRSALSGFVDVHRLASS 162 (163)
Q Consensus 111 ~~~rf~~PV~~Gd~l~~~~~v~-----~g~v~~~~~-~~q~g~~v~~g~a~v~~p~~~ 162 (163)
+++||++||++||+|+++.++. .++++++++ .||+|++|++|++++..|..+
T Consensus 88 ~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~nq~G~~V~~g~~~~l~~~~~ 145 (466)
T PRK08190 88 QSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCTNQDGEVVITGTAEVIAPTEK 145 (466)
T ss_pred EEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEEeCCCCEEEEEEEEeeccccc
Confidence 9999999999999999999883 257889888 489999999999999877653
No 15
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=99.93 E-value=2.2e-24 Score=154.46 Aligned_cols=112 Identities=36% Similarity=0.480 Sum_probs=98.9
Q ss_pred eeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhccCCCceeeEEEEEEccccCCCCe
Q 031259 45 FEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGET 124 (163)
Q Consensus 45 ~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf~~PV~~Gd~ 124 (163)
..+++++++..|++++||+||||+|+++|+..||+++|+||+++++++.+++..++..++...+..+++||++||++||+
T Consensus 7 ~~~~~~~~~~~fa~~~gd~npiH~d~~~A~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Pv~~Gd~ 86 (127)
T cd03441 7 GRTVTEADIALFARLSGDPNPIHVDPEYAKAAGFGGRIAHGMLTLSLASGLLVQWLPGTDGANLGSQSVRFLAPVFPGDT 86 (127)
T ss_pred ceEcCHHHHHHHHHHhCCCCccccCHHHHHhCCCCCceechHHHHHHHHhhhhhhccCcccceeEEeEEEEeCCcCCCCE
Confidence 56789999999999999999999999999999999999999999999999888876322456677899999999999999
Q ss_pred EEEEEEEEC-------cEEEEEEE-EecCCeEEEEEEEEE
Q 031259 125 LVTEMWLQG-------LRVIYQVK-VKERNRSALSGFVDV 156 (163)
Q Consensus 125 l~~~~~v~~-------g~v~~~~~-~~q~g~~v~~g~a~v 156 (163)
|+++.++.+ +.++++++ .||+|++++.|++++
T Consensus 87 l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~ 126 (127)
T cd03441 87 LRVEVEVLGKRPSKGRGVVTVRTEARNQGGEVVLSGEATV 126 (127)
T ss_pred EEEEEEEEEeeccCCCcEEEEEEEEEeCCCCEEEEEEEEe
Confidence 999999831 57888888 489999999999876
No 16
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=99.92 E-value=1.8e-24 Score=193.91 Aligned_cols=143 Identities=23% Similarity=0.209 Sum_probs=120.3
Q ss_pred EEeCCCCCCCCCCCCCCCcccCCCccccCCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechH
Q 031259 7 FLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGL 86 (163)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~ 86 (163)
.+||+-.||+++.|. .+|+ ||+++|++++... +++|++++..|+.++||+||||+|++||++.+|+++|+||+
T Consensus 507 ~~~~~~~~~~~~~~~--~~~~----ed~~VG~~~~~~~-~tvt~~dI~~FA~~sgD~nPiH~D~e~A~~s~fg~~Ia~G~ 579 (663)
T TIGR02278 507 WARGAEVPGAEVHPF--RKPY----EDLEIGDSLTTHR-RTVTEADIALFAALSGDHFYAHMDEIAARESFFGKRVAHGY 579 (663)
T ss_pred ccCCCCcCcCCcCCC--CCCH----HHcCCCCCcCCCC-eEEcHHHHHHHHHhhCCCCcccCCHHHHhhCCCCCceeCHH
Confidence 579999999999884 4555 9999999997654 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCC-ceeeEEEEEEccccCCCCeEEEEEEEE------C---cEEEEEEE-EecCCeEEEEEEEE
Q 031259 87 CTMGFAVRAIIKFICRGDP-NMVKNIFSRFLLHVYPGETLVTEMWLQ------G---LRVIYQVK-VKERNRSALSGFVD 155 (163)
Q Consensus 87 l~~a~~~~~l~~~~~~g~~-~~~~~~~~rf~~PV~~Gd~l~~~~~v~------~---g~v~~~~~-~~q~g~~v~~g~a~ 155 (163)
++++++.+++..+. ++.. ..+..+++||++||++||+|++++++. + ++++++++ .||+|++|++++.+
T Consensus 580 l~~sl~~~l~~~~~-~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~nq~G~~Vl~~~~~ 658 (663)
T TIGR02278 580 FVLSAAAGLFVDPA-PGPVLANYGLENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVNQNGEPVATYDVL 658 (663)
T ss_pred HHHHHHHHHhhccC-ccchhhhcccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEcCCCCEEEEEEEH
Confidence 99999988776543 2211 123346999999999999999999882 1 37888888 48999999999976
Q ss_pred EE
Q 031259 156 VH 157 (163)
Q Consensus 156 v~ 157 (163)
+.
T Consensus 659 ~l 660 (663)
T TIGR02278 659 TL 660 (663)
T ss_pred Hh
Confidence 54
No 17
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=99.92 E-value=6e-25 Score=158.43 Aligned_cols=98 Identities=31% Similarity=0.520 Sum_probs=81.1
Q ss_pred CCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhccCCCceeeEEEEE
Q 031259 35 KIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSR 114 (163)
Q Consensus 35 ~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~r 114 (163)
.+|+........++|++++.+|+.++||+||||+|++||+..||+++|+||+++++++.+++.+++.+.....+..+++|
T Consensus 5 ~~g~~~~~~~~~tit~~~~~~fa~~sgD~nPiH~D~~~A~~~gf~~~ivhG~~~~a~~~~~~~~~~~~~~~~~~~~~~~r 84 (122)
T PF01575_consen 5 RIGQGIRHSRSRTITEADIRQFAALSGDFNPIHVDPEYARATGFGGPIVHGMLTLALASGLLGDWLGPNPPARLGRFNVR 84 (122)
T ss_dssp CTTSEEEEEEEEEEEHHHHHHHHHHHT---HHHH-HHHHHTSTTSSSB-BHHHHHHHHHHHHHHHHSTTECEEEEEEEEE
T ss_pred CCCCccccccCEEECHHHHHHHHHhhCCCCcceecHHHHhhcCCCCEEEccHHHHHHHHHHHHHhccCccceEEEEEEEE
Confidence 46777656567889999999999999999999999999999999999999999999999999998843335778889999
Q ss_pred EccccCCCCeEEEEEEEE
Q 031259 115 FLLHVYPGETLVTEMWLQ 132 (163)
Q Consensus 115 f~~PV~~Gd~l~~~~~v~ 132 (163)
|++||++||+|++++++.
T Consensus 85 F~~PV~~gdtl~~~~~v~ 102 (122)
T PF01575_consen 85 FRAPVFPGDTLTAEVEVT 102 (122)
T ss_dssp ESS--BTTEEEEEEEEEE
T ss_pred EeccccCCCEEEEEEEEE
Confidence 999999999999999984
No 18
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=99.92 E-value=8.6e-24 Score=157.88 Aligned_cols=121 Identities=19% Similarity=0.118 Sum_probs=98.3
Q ss_pred CCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhccCCC---ceeeEE
Q 031259 35 KIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDP---NMVKNI 111 (163)
Q Consensus 35 ~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~~g~~---~~~~~~ 111 (163)
.+|+++|....++++++++..|++++||+||+|+|+++|++.||+++|+||+++++++.+++.+++..... ..+..+
T Consensus 11 ~vG~~~~~~~~~~vt~~di~~FA~~sgD~nPiH~D~e~A~~~gfg~~Ia~G~~t~sl~~~l~~~~~~~~~~~~~~~~g~~ 90 (149)
T cd03450 11 LVGQELGVSDWVTVDQERIDQFADATGDHQWIHVDPERAAAEPFGGTIAHGFLTLSLLPALTPQLFRVEGVKMGVNYGLD 90 (149)
T ss_pred hCCCCcCCCCCEEECHHHHHHHHHhhCCCCccccCHHHHhhCCCCCeEECHHHHHHHHHHHHHhcccCCCceEEEEeecc
Confidence 58999988777789999999999999999999999999999999999999999999999988886531122 223456
Q ss_pred EEEEccccCCCCeEEEEEEEE------Cc--EEEEEEEE--ecCCeEEEEEEEE
Q 031259 112 FSRFLLHVYPGETLVTEMWLQ------GL--RVIYQVKV--KERNRSALSGFVD 155 (163)
Q Consensus 112 ~~rf~~PV~~Gd~l~~~~~v~------~g--~v~~~~~~--~q~g~~v~~g~a~ 155 (163)
++||++||++||+|+++.++. ++ ++++++++ ...+++++..+-.
T Consensus 91 ~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 144 (149)
T cd03450 91 KVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEIEGEDKPACVAEWI 144 (149)
T ss_pred EEEeCcceeCCcEEEEEEEEEEEEEcCCCeEEEEEEEEEEEeCCCCceEEEEEE
Confidence 999999999999999999982 23 56666654 3456677766543
No 19
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=99.92 E-value=9.6e-24 Score=160.22 Aligned_cols=126 Identities=9% Similarity=-0.022 Sum_probs=99.6
Q ss_pred ccCCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhc----cCCCc--
Q 031259 33 VVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFIC----RGDPN-- 106 (163)
Q Consensus 33 ~~~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~----~g~~~-- 106 (163)
.-.+|..+|.....+++++++..||+++||+||+|+|++||++++|+++|+||++. +++...+..... .+...
T Consensus 5 ~~~~g~~~~~~~~~~Vt~~~I~~FA~~~GD~nPlH~D~eyA~~s~fg~~IApgt~~-~~~~~~~~~~~~~~~~~g~~~~~ 83 (166)
T PRK13691 5 TDIRGMVWRYPDYFVVGREQIRQFARAVKCDHPAFFSEDAAAELGYDALVAPLTFV-TIFAKYVQLDFFRHVDVGMETMQ 83 (166)
T ss_pred hhhCccCcCCCCCeEECHHHHHHHHHHHCCCCCcccCHHHHHhCCCCCcccCHHHH-HHHHHHhccccccccccCCCcce
Confidence 34689999888888999999999999999999999999999999999999999886 333222222111 11111
Q ss_pred -eeeEEEEEEccccCCCCeEEEEEEEE-------CcEEEEEEE-EecCCeEEEEEEEEEEec
Q 031259 107 -MVKNIFSRFLLHVYPGETLVTEMWLQ-------GLRVIYQVK-VKERNRSALSGFVDVHRL 159 (163)
Q Consensus 107 -~~~~~~~rf~~PV~~Gd~l~~~~~v~-------~g~v~~~~~-~~q~g~~v~~g~a~v~~p 159 (163)
...+++++|++||++||+|+++.++. .++++++++ .||+|++|++++.++..+
T Consensus 84 ~v~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~NQ~Ge~V~~~~~~~~~~ 145 (166)
T PRK13691 84 IVQVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTNDDGELVMEAYTTLMGQ 145 (166)
T ss_pred eeeeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEECCCCCEEEEEEEEEEEe
Confidence 12357999999999999999999872 157889888 499999999999887643
No 20
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=99.91 E-value=4.3e-23 Score=155.66 Aligned_cols=128 Identities=8% Similarity=0.032 Sum_probs=98.8
Q ss_pred cccCCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhc------cCCC
Q 031259 32 SVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFIC------RGDP 105 (163)
Q Consensus 32 ~~~~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~------~g~~ 105 (163)
+...+|++++....+++|++++..|++++||+||+|+|++||++.+|+++|+|+++..++-......+.. +++.
T Consensus 4 ~~~~vG~~~~~~~~~tvt~~dI~~FA~~~GD~nPlh~D~e~A~~~~fg~~iA~~~~~~~~gl~~~~~~~~~~~l~~~~~~ 83 (159)
T PRK13692 4 SADIVGMHYRYPDHYEVEREKIREYAVAVQNDDAAYFEEDAAAELGYKGLLAPLTFICVFGYKAQSAFFKHANIAVADAQ 83 (159)
T ss_pred ChhHceeEcCCCCceEeCHHHHHHHHHHHCCCCCCccCHHHHHhcCCCCcccChHHHHHhhhhhhhhhhhcccCCCCccc
Confidence 4578999987654578999999999999999999999999999999999999988854332211111110 0011
Q ss_pred ceeeEEEEEEccccCCCCeEEEEEEEE-----C--cEEEEEEE-EecCCeEEEEEEEEEEec
Q 031259 106 NMVKNIFSRFLLHVYPGETLVTEMWLQ-----G--LRVIYQVK-VKERNRSALSGFVDVHRL 159 (163)
Q Consensus 106 ~~~~~~~~rf~~PV~~Gd~l~~~~~v~-----~--g~v~~~~~-~~q~g~~v~~g~a~v~~p 159 (163)
....+++++|++||++||+|+++.++. + ++|+++++ .||+|++|+++++++.-.
T Consensus 84 ~~~~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~Nq~Ge~V~~~~~~~~~r 145 (159)
T PRK13692 84 IVQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTNEEGDVVQETYTTLAGR 145 (159)
T ss_pred eEeeeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEcCCCCEEEEEEEEEEEe
Confidence 122358999999999999999999882 1 58999988 489999999999887643
No 21
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=2.8e-23 Score=186.75 Aligned_cols=143 Identities=23% Similarity=0.209 Sum_probs=115.8
Q ss_pred EEeCCCCCCCCCCCCCCCcccCCCccccCCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechH
Q 031259 7 FLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGL 86 (163)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~ 86 (163)
..||+..+..-+.+ +.+|+ ||+++|++++.. .+++|++++..|+.++||+||||+|++||++.+|+++|+||+
T Consensus 519 ~~~~~~~~~~~~~~--~~~~f----ed~~vG~~~~~~-~~tvt~~di~~FA~lsgD~nPiH~D~e~A~~~~fg~~ia~G~ 591 (675)
T PRK11563 519 WVRGAPVNEDRVHP--FRKYF----EELRIGDSLLTA-RRTVTEADIVNFACLSGDTFYAHMDEIAAAANFFGGRVAHGY 591 (675)
T ss_pred ecCCCCcCcccccc--CCCCH----HHcCCCCEeccC-CEEEcHHHHHHHHHhhCCCCccccCHHHHhhCCCCCceeCHH
Confidence 45677666665555 34555 999999999754 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCC-ceeeEEEEEEccccCCCCeEEEEEEEE-----C----cEEEEEEEE-ecCCeEEEEEEEE
Q 031259 87 CTMGFAVRAIIKFICRGDP-NMVKNIFSRFLLHVYPGETLVTEMWLQ-----G----LRVIYQVKV-KERNRSALSGFVD 155 (163)
Q Consensus 87 l~~a~~~~~l~~~~~~g~~-~~~~~~~~rf~~PV~~Gd~l~~~~~v~-----~----g~v~~~~~~-~q~g~~v~~g~a~ 155 (163)
++++++.+++..|. ++.. ..+...++||++||++||+|+++.++. . +++++++++ ||+|++|++|+.+
T Consensus 592 l~~sl~~~l~~~~~-~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~G~~V~~~~~~ 670 (675)
T PRK11563 592 FVLSAAAGLFVDPA-PGPVLANYGLENLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTNQDGELVATYDIL 670 (675)
T ss_pred HHHHHHHHHhhccC-ccchhhhcccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEECCCCEEEEEEEH
Confidence 99999998776553 2211 122335899999999999999999882 1 478888884 8999999999986
Q ss_pred EE
Q 031259 156 VH 157 (163)
Q Consensus 156 v~ 157 (163)
+.
T Consensus 671 ~l 672 (675)
T PRK11563 671 TL 672 (675)
T ss_pred Hh
Confidence 54
No 22
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=99.58 E-value=2.4e-15 Score=109.09 Aligned_cols=115 Identities=20% Similarity=0.094 Sum_probs=77.8
Q ss_pred CCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHH--HHHHhccCCCcee--eE
Q 031259 35 KIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRA--IIKFICRGDPNMV--KN 110 (163)
Q Consensus 35 ~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~--l~~~~~~g~~~~~--~~ 110 (163)
.||.+++... .++++.+++.|+.++||.||+|+|+++|+..+++++++|+++..++.... +... ++.+...+ .+
T Consensus 2 ~iG~~~~~~~-~~v~~~~i~~ya~avg~~~p~~~d~~~a~~~~~~~~~apPt~~~~~~~~~~~~~~~-~~~~~~~~vh~~ 79 (132)
T PF13452_consen 2 WIGREFEPVT-YTVTRRDIRRYALAVGDPNPLYLDEEYARAAGHGGLIAPPTFAVVLAWPAPAMFPD-LGFDLTRLVHGE 79 (132)
T ss_dssp GTT-B-E-EE-EEE-HHHHHHHHHHTT-CTTHHHHCTSS--TTSTT-B--GGGHHHHHHHCCGGCGC-CSS-GGGEEEEE
T ss_pred CCccEeCCee-EEECHHHHHHHHHHhCcCCccccCHhHhhccCCCCcccCHHHHhhhhcccceeeec-CCCChhhEEecC
Confidence 3788886655 47899999999999999999999999999999999999999987766542 2211 12233333 46
Q ss_pred EEEEEccccCCCCeEEEEEEE-----E-C-c---EEEEEEEE-ecCCeEEEE
Q 031259 111 IFSRFLLHVYPGETLVTEMWL-----Q-G-L---RVIYQVKV-KERNRSALS 151 (163)
Q Consensus 111 ~~~rf~~PV~~Gd~l~~~~~v-----~-~-g---~v~~~~~~-~q~g~~v~~ 151 (163)
++++|++|+++||+|+++.++ . + | +|+++.+. ||+|++|++
T Consensus 80 ~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~~Ge~v~t 131 (132)
T PF13452_consen 80 QDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTDQDGELVAT 131 (132)
T ss_dssp EEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-CTTEEEEE
T ss_pred cEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCEEEe
Confidence 899999999999999999887 2 1 2 45666664 799999985
No 23
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=98.94 E-value=2.6e-08 Score=71.46 Aligned_cols=92 Identities=15% Similarity=0.064 Sum_probs=65.6
Q ss_pred CCCCHHHHhhCCCCCceechHHHHHHHHHHHHHH--hcc----CCCceeeE-EEEEEccccCCCCeEEEEEEEE---CcE
Q 031259 66 LHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKF--ICR----GDPNMVKN-IFSRFLLHVYPGETLVTEMWLQ---GLR 135 (163)
Q Consensus 66 iH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~--~~~----g~~~~~~~-~~~rf~~PV~~Gd~l~~~~~v~---~g~ 135 (163)
+..|..|++....+.+++||++.+-.+.++...+ ... +....+.+ .+++|++||+|||+|++++++. ++.
T Consensus 28 v~~d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pgd~l~i~~~v~~~~~~~ 107 (131)
T cd01288 28 VTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGDQLILEVELLKLRRGI 107 (131)
T ss_pred ecCCChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCCCEEEEEEEEEEeeCCE
Confidence 4456678887777889999999854443332221 111 11122333 5899999999999999999883 467
Q ss_pred EEEEEEEecCCeEEEEEEEEEE
Q 031259 136 VIYQVKVKERNRSALSGFVDVH 157 (163)
Q Consensus 136 v~~~~~~~q~g~~v~~g~a~v~ 157 (163)
+.+++++.++|+++++|+.++.
T Consensus 108 ~~~~~~~~~~g~~v~~~~~~~~ 129 (131)
T cd01288 108 GKFKGKAYVDGKLVAEAELMFA 129 (131)
T ss_pred EEEEEEEEECCEEEEEEEEEEE
Confidence 8888887788999999998875
No 24
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=1.8e-09 Score=85.68 Aligned_cols=103 Identities=20% Similarity=0.177 Sum_probs=79.0
Q ss_pred ecCHHHHHHHHhHhCCCCCCCCCHHHHhh-CCCCCceechHHHHHHHHHHHHHHhccCCCceeeEEEEEEccccCCCCeE
Q 031259 47 DYTQPSQALVYRLSGDYNPLHSDPMVAKA-AGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETL 125 (163)
Q Consensus 47 ~~t~~~~~~fa~~sgD~nPiH~D~e~A~~-~g~~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf~~PV~~Gd~l 125 (163)
+.|+..+-+|++++-|.|.||+|..||+. .|||++|+||.+...++.+++.... + -.+.++++|-.+|+|+++++
T Consensus 167 tptpvllfrYsaltfN~HrIHyD~~Yat~vEgYpgLVvhGPl~atlll~~~~~~~-p---q~~~Rf~fR~L~p~f~~~~l 242 (273)
T COG3777 167 TPTPVLLFRYSALTFNGHRIHYDAPYATYVEGYPGLVVHGPLIATLLLRAFQPFL-P---QPIRRFRFRNLSPAFPNETL 242 (273)
T ss_pred CCCchheeehhhhccCceeeeccCcceeeccCCCCceecchHHHHHHHHHhhhhc-c---ccchheeccccccccCCCCe
Confidence 44566777888999999999999999975 8999999999999999888776532 2 23778899999999999999
Q ss_pred EEEEEEEC-cEEEEEEEEecCCeEEEEEEE
Q 031259 126 VTEMWLQG-LRVIYQVKVKERNRSALSGFV 154 (163)
Q Consensus 126 ~~~~~v~~-g~v~~~~~~~q~g~~v~~g~a 154 (163)
++.....+ +.+.... .+.++.+.+.|.+
T Consensus 243 ti~~~l~~~g~~~~w~-~~~~~pv~mrarV 271 (273)
T COG3777 243 TICGSLSGSGGAELWT-IRGDGPVAMRARV 271 (273)
T ss_pred eEeeEecCCCceEEEE-ecCCcchhheeee
Confidence 99988854 3233211 2445556665554
No 25
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=98.91 E-value=3e-08 Score=73.20 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=64.4
Q ss_pred CCCHHHHhhCCCCCceechHHHH---HHHHHHHHHHhcc--CCCceeeE-EEEEEccccCCCCeEEEEEEEE---CcEEE
Q 031259 67 HSDPMVAKAAGFSRPILHGLCTM---GFAVRAIIKFICR--GDPNMVKN-IFSRFLLHVYPGETLVTEMWLQ---GLRVI 137 (163)
Q Consensus 67 H~D~e~A~~~g~~~~iv~G~l~~---a~~~~~l~~~~~~--g~~~~~~~-~~~rf~~PV~~Gd~l~~~~~v~---~g~v~ 137 (163)
..|..|++....+.+++||.+.. +.+..++...... +....+.+ .++||++||++||+|++++++. ++.+.
T Consensus 44 ~~d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd~l~i~~~i~~~~~~~v~ 123 (147)
T PRK00006 44 TINEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGDQLILEVELLKQRRGIWK 123 (147)
T ss_pred cCCCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCCEEEEEEEEEEeeCCEEE
Confidence 44555666555678999998884 4444433221111 11222344 4899999999999999999883 46888
Q ss_pred EEEEEecCCeEEEEEEEEEEe
Q 031259 138 YQVKVKERNRSALSGFVDVHR 158 (163)
Q Consensus 138 ~~~~~~q~g~~v~~g~a~v~~ 158 (163)
+++++.++|++|++|++++..
T Consensus 124 ~~~~~~~~g~~v~~~~~~~~~ 144 (147)
T PRK00006 124 FKGVATVDGKLVAEAELMFAI 144 (147)
T ss_pred EEEEEEECCEEEEEEEEEEEE
Confidence 888877899999999998764
No 26
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=98.89 E-value=4e-08 Score=75.83 Aligned_cols=79 Identities=19% Similarity=0.134 Sum_probs=60.1
Q ss_pred CCceechHHHHHHHHHHHHHHhccCCCceeeEEEEEEccccCCCCeEEEEEEEE---CcEEEEEEEEecCCeEEEEEEEE
Q 031259 79 SRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQ---GLRVIYQVKVKERNRSALSGFVD 155 (163)
Q Consensus 79 ~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf~~PV~~Gd~l~~~~~v~---~g~v~~~~~~~q~g~~v~~g~a~ 155 (163)
+..++||.++++++.+++... .++........+++|++||+|||+|++++++. ++.+.+++.+.++|++|++|+.+
T Consensus 100 ~~~i~hG~f~~aqa~~la~~~-~~~~~~~~~i~~irF~kPV~pGD~L~~ea~v~~~~~~~~~v~~~~~v~g~~V~ege~~ 178 (185)
T PRK04424 100 KTGIARGHHLFAQANSLAVAV-IDAELALTGVANIRFKRPVKLGERVVAKAEVVRKKGNKYIVEVKSYVGDELVFRGKFI 178 (185)
T ss_pred CCCeecHHHHHHHHHHHHHHh-cCCcEEEEEeeeEEEccCCCCCCEEEEEEEEEEccCCEEEEEEEEEECCEEEEEEEEE
Confidence 357999999999988765432 22222223346999999999999999999984 34667777766889999999998
Q ss_pred EEe
Q 031259 156 VHR 158 (163)
Q Consensus 156 v~~ 158 (163)
+..
T Consensus 179 ~~~ 181 (185)
T PRK04424 179 MYR 181 (185)
T ss_pred EEE
Confidence 865
No 27
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=98.67 E-value=5e-07 Score=78.49 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=82.2
Q ss_pred CCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhhCCCCCceechHHHH---HHHHHHHHHHhccCC---Cceee
Q 031259 36 IPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTM---GFAVRAIIKFICRGD---PNMVK 109 (163)
Q Consensus 36 vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~---a~~~~~l~~~~~~g~---~~~~~ 109 (163)
+|.+.|-.-+..+..-+ .. .+.+-. -++.|..|++...++.+++||++.. |.+.+++.....++. ...+.
T Consensus 330 LPHR~PmLLVDrIl~~e-~~--~i~a~k-~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~Ll 405 (464)
T PRK13188 330 LPHRYPFLLVDKIIELG-DT--KIVGIK-NVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFM 405 (464)
T ss_pred CCCCCCeEEEEEEeEEe-CC--EEEEEE-EcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEE
Confidence 56676666665554333 11 122322 3788899998777788999999987 554444332111111 22345
Q ss_pred EE-EEEEccccCCCCeEEEEEEEE----CcEEEEEEEEecCCeEEEEEEEEEEec
Q 031259 110 NI-FSRFLLHVYPGETLVTEMWLQ----GLRVIYQVKVKERNRSALSGFVDVHRL 159 (163)
Q Consensus 110 ~~-~~rf~~PV~~Gd~l~~~~~v~----~g~v~~~~~~~q~g~~v~~g~a~v~~p 159 (163)
+. ++||++||+|||+|++++++. ++.+.+++++.++|++|++++.++.-.
T Consensus 406 gI~kvKF~~PV~PGDtL~I~veI~~~~~~giv~f~g~~~vdGelVaeael~~~v~ 460 (464)
T PRK13188 406 KIDKVKFRQKVVPGDTLIFKVELLSPIRRGICQMQGKAYVNGKLVCEAELMAQIV 460 (464)
T ss_pred eccEEEEcCCCCCCCEEEEEEEEEEEecCCEEEEEEEEEECCEEEEEEEEEEEEe
Confidence 54 899999999999999999862 467888888768999999999887643
No 28
>PLN02864 enoyl-CoA hydratase
Probab=98.62 E-value=3.5e-07 Score=75.90 Aligned_cols=124 Identities=10% Similarity=-0.003 Sum_probs=93.2
Q ss_pred ccCCCCCCCCeeeeecCHHHHHHHHhHhCCCCCCCCCHHHHhh----CCCCCceechHHHHHHHHHHHHH-H-hcc---C
Q 031259 33 VVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKA----AGFSRPILHGLCTMGFAVRAIIK-F-ICR---G 103 (163)
Q Consensus 33 ~~~vg~~~P~~~~~~~t~~~~~~fa~~sgD~nPiH~D~e~A~~----~g~~~~iv~G~l~~a~~~~~l~~-~-~~~---g 103 (163)
+..+|.++|..+. ..+..|+.+||...|+.+|.+.|++.++. .|+++..+++++...+....... + ..+ -
T Consensus 11 ~~~~g~~~p~~~~-~~~~~d~~lyAl~vG~~~~~~~d~~~l~~~ye~~g~~~~~a~PTf~~vl~~~~~~~~~~~~p~~~~ 89 (310)
T PLN02864 11 DLVLAHKFPEVTY-SYTERDVALYALGVGACGRDAVDEDELKYVYHRDGQQFIKVLPTFASLFNLGSLDGFGLDLPGLNY 89 (310)
T ss_pred HHHhCCcCCCeeE-EECHHHHHHHHHhcCCCCCCCCChHHhhhhhccccCCCcccCCceeeeccccCcccccccCCCCCC
Confidence 4568999998877 78999999999999999999999999987 79999999999875554322111 1 111 1
Q ss_pred CCceee--EEEEEEccccCCCCeEEEEEEEE----Cc---EEEEEEEE-e-cCCeEEEEEEEEEE
Q 031259 104 DPNMVK--NIFSRFLLHVYPGETLVTEMWLQ----GL---RVIYQVKV-K-ERNRSALSGFVDVH 157 (163)
Q Consensus 104 ~~~~~~--~~~~rf~~PV~~Gd~l~~~~~v~----~g---~v~~~~~~-~-q~g~~v~~g~a~v~ 157 (163)
+..++. ++++++++|+.+|++|+++.++. .| ++.++... + ++|++|++.+.++.
T Consensus 90 d~~~lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~ 154 (310)
T PLN02864 90 DPSLLLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIF 154 (310)
T ss_pred ChhheeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEE
Confidence 223343 58999999999999999999883 23 35666663 4 68999998777654
No 29
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=98.47 E-value=3.7e-06 Score=61.45 Aligned_cols=81 Identities=14% Similarity=0.129 Sum_probs=57.1
Q ss_pred CCC-CceechHHHHHHHHHHHHHHh---cc---CC--CceeeE-EEEEEccccCCCCeEEEEEEEE---CcEEEEEEEEe
Q 031259 77 GFS-RPILHGLCTMGFAVRAIIKFI---CR---GD--PNMVKN-IFSRFLLHVYPGETLVTEMWLQ---GLRVIYQVKVK 143 (163)
Q Consensus 77 g~~-~~iv~G~l~~a~~~~~l~~~~---~~---g~--~~~~~~-~~~rf~~PV~~Gd~l~~~~~v~---~g~v~~~~~~~ 143 (163)
+|| .+++||.+..-.+.++..-+. .. +. ...+.+ .++||++||+|||+|++++++. ++.+.++++++
T Consensus 46 HFp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~pGd~l~i~~~i~~~~~~~~~~~~~~~ 125 (140)
T TIGR01750 46 HFPEKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVVPGDQLILHAEFLKKRRKIGKFKGEAT 125 (140)
T ss_pred CCcCcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccCCCCEEEEEEEEEEccCCEEEEEEEEE
Confidence 344 578999887655544432211 11 11 123344 5899999999999999999883 46778888877
Q ss_pred cCCeEEEEEEEEEE
Q 031259 144 ERNRSALSGFVDVH 157 (163)
Q Consensus 144 q~g~~v~~g~a~v~ 157 (163)
++|+++++|+.++.
T Consensus 126 ~~g~~va~~~~~~~ 139 (140)
T TIGR01750 126 VDGKVVAEAEITFA 139 (140)
T ss_pred ECCEEEEEEEEEEE
Confidence 89999999998874
No 30
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=98.43 E-value=9.8e-06 Score=57.81 Aligned_cols=88 Identities=13% Similarity=0.033 Sum_probs=58.5
Q ss_pred CHHHHhhCCCCCceechHHHHHHHHHHHHHHhcc--C------CCceeeE-EEEEEccccCCCCeEEEEEEEE---CcEE
Q 031259 69 DPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICR--G------DPNMVKN-IFSRFLLHVYPGETLVTEMWLQ---GLRV 136 (163)
Q Consensus 69 D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~~--g------~~~~~~~-~~~rf~~PV~~Gd~l~~~~~v~---~g~v 136 (163)
|..|.+..--+.+++||.+..-++.++...+... . ....+.+ .+++|++|+++||+|++++++. ++.+
T Consensus 30 ~~~~~~~hfp~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~pgd~l~i~~~i~~~~~~~~ 109 (131)
T cd00493 30 NEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVLPGDTLTLEVELLKVRRGLG 109 (131)
T ss_pred CChhhcccCCCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcCCCCEEEEEEEEEEeeCCEE
Confidence 4444432222468999998876665544433211 1 1123334 5899999999999999999883 4688
Q ss_pred EEEEEEecCCeEEEEEEEEE
Q 031259 137 IYQVKVKERNRSALSGFVDV 156 (163)
Q Consensus 137 ~~~~~~~q~g~~v~~g~a~v 156 (163)
.+++.+..+|+++++++..+
T Consensus 110 ~~~~~~~~~g~~v~~~~~~~ 129 (131)
T cd00493 110 KFDGRAYVDGKLVAEAELMA 129 (131)
T ss_pred EEEEEEEECCEEEEEEEEEE
Confidence 88887655799999998443
No 31
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=98.13 E-value=5.7e-05 Score=57.57 Aligned_cols=97 Identities=13% Similarity=0.059 Sum_probs=62.8
Q ss_pred CCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhc--cCC-CceeeE-EEEEEccccCCCCeE-EEEEEEE------Cc
Q 031259 66 LHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFIC--RGD-PNMVKN-IFSRFLLHVYPGETL-VTEMWLQ------GL 134 (163)
Q Consensus 66 iH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~--~g~-~~~~~~-~~~rf~~PV~~Gd~l-~~~~~v~------~g 134 (163)
++.|..|.+..-.+++++||++..=.+++++.-+.. ... ...+.+ .+++|+++|+|||++ ++++++. ++
T Consensus 58 Vs~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~gi~~~kfr~~v~Pgd~~~~l~v~i~~~~~~~~~ 137 (169)
T TIGR01749 58 IRPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFFLGWLGGPGRGRALGVGEVKFTGQVLPTAKKVTYRIHFKRVINRRLV 137 (169)
T ss_pred cCCCCcceeCCCCCCCcCchHHHHHHHHHHHHHHHhccccCCceEEeeccEEEEccCEecCCeEEEEEEEEEEEeecCCc
Confidence 334444544333357899999975444443332221 111 123444 489999999999996 6766652 35
Q ss_pred EEEEEEEEecCCeEEEE---EEEEEEecCCC
Q 031259 135 RVIYQVKVKERNRSALS---GFVDVHRLASS 162 (163)
Q Consensus 135 ~v~~~~~~~q~g~~v~~---g~a~v~~p~~~ 162 (163)
.+.+++++..+|++|++ +...+.+|.|+
T Consensus 138 ~~~~~~~i~v~g~~va~a~~~~~~~~~~~~~ 168 (169)
T TIGR01749 138 MGIADGEVLVDGRLIYTASDLRVGLFTSTSA 168 (169)
T ss_pred EEEEEEEEEECCEEEEEEECCEEEEecCCCC
Confidence 67888876677999999 66788888886
No 32
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=98.13 E-value=8.4e-05 Score=52.44 Aligned_cols=78 Identities=18% Similarity=0.038 Sum_probs=55.9
Q ss_pred CceechHHHHHHHHHHHHHHhccCCC-ceeeEEEEEEccccCCCCeEEEEEEEE--C-cEEEEEEEE-ecCCeEEEEEEE
Q 031259 80 RPILHGLCTMGFAVRAIIKFICRGDP-NMVKNIFSRFLLHVYPGETLVTEMWLQ--G-LRVIYQVKV-KERNRSALSGFV 154 (163)
Q Consensus 80 ~~iv~G~l~~a~~~~~l~~~~~~g~~-~~~~~~~~rf~~PV~~Gd~l~~~~~v~--~-g~v~~~~~~-~q~g~~v~~g~a 154 (163)
.-++||-+.++++..+.......... ..-..++++|.+|+.+||+|.+++++. + ....+++++ +++|++++.+++
T Consensus 30 ~g~~HGG~i~al~D~~~~~~~~~~~~~~~t~~~~i~f~rp~~~G~~l~~~a~v~~~g~~~~~~~~~i~~~~~~~va~~~~ 109 (114)
T TIGR02286 30 HGTAHGGFLFSLADSAFAYACNSYGDAAVAAQCTIDFLRPGRAGERLEAEAVEVSRGGRTGTYDVEVVNQEGELVALFRG 109 (114)
T ss_pred CCCchHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEcCCCCEEEEEEE
Confidence 34899999999887654332211122 223467999999999999999999983 3 345566664 688999999988
Q ss_pred EEE
Q 031259 155 DVH 157 (163)
Q Consensus 155 ~v~ 157 (163)
++.
T Consensus 110 t~~ 112 (114)
T TIGR02286 110 TSR 112 (114)
T ss_pred EEE
Confidence 875
No 33
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=98.07 E-value=0.00013 Score=55.83 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=59.0
Q ss_pred CCCceechHHHHHHHHHHHHHHhc--cCC-CceeeE-EEEEEccccCCCCe-EEEEEEEE------CcEEEEEEEEecCC
Q 031259 78 FSRPILHGLCTMGFAVRAIIKFIC--RGD-PNMVKN-IFSRFLLHVYPGET-LVTEMWLQ------GLRVIYQVKVKERN 146 (163)
Q Consensus 78 ~~~~iv~G~l~~a~~~~~l~~~~~--~g~-~~~~~~-~~~rf~~PV~~Gd~-l~~~~~v~------~g~v~~~~~~~q~g 146 (163)
.+++++||.+..=.+++++.-+.. ... ...+.+ .+++|+++|+|||+ +++++++. ++.+.+++....+|
T Consensus 73 p~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~g~~~~kfr~~v~Pgd~~l~l~v~i~~~~~~~~~~~~~~~~i~v~g 152 (172)
T PRK05174 73 IGDPVMPGCLGLDAMWQLVGFYLGWLGGPGKGRALGVGEVKFTGQVLPTAKKVTYEIDIKRVINRKLVMGIADGRVLVDG 152 (172)
T ss_pred CCCCcCchHHHHHHHHHHHHHHHhcccccCceEEeeccEEEECccCcCCCEEEEEEEEEEEEecCCCCEEEEEEEEEECC
Confidence 357999999975444443332221 111 123344 48999999999998 78877662 35678888766779
Q ss_pred eEEEEE---EEEEEecCCC
Q 031259 147 RSALSG---FVDVHRLASS 162 (163)
Q Consensus 147 ~~v~~g---~a~v~~p~~~ 162 (163)
++|+++ ...+.+|.|+
T Consensus 153 ~~va~a~~~~l~~~~~~~~ 171 (172)
T PRK05174 153 EEIYTAKDLKVGLFKDTSA 171 (172)
T ss_pred EEEEEEEeeEEEEeccCCC
Confidence 999999 7888899886
No 34
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=98.05 E-value=0.0002 Score=45.38 Aligned_cols=78 Identities=26% Similarity=0.257 Sum_probs=58.4
Q ss_pred CCceechHHHHHHHHHHHHHHhcc----CCCceeeEEEEEEccccCCCCeEEEEEEEEC---cEEEEEEEE-ecCCeEEE
Q 031259 79 SRPILHGLCTMGFAVRAIIKFICR----GDPNMVKNIFSRFLLHVYPGETLVTEMWLQG---LRVIYQVKV-KERNRSAL 150 (163)
Q Consensus 79 ~~~iv~G~l~~a~~~~~l~~~~~~----g~~~~~~~~~~rf~~PV~~Gd~l~~~~~v~~---g~v~~~~~~-~q~g~~v~ 150 (163)
....+||.....++......+... +........+++|.+|+++||.|.++.++.+ ..+.++... +++|++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (100)
T cd03440 14 GGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGRSSVTVEVEVRNEDGKLVA 93 (100)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEEEeccccEEEEEEEEECCCCCEEE
Confidence 356899999888888777765532 2244556789999999999999999999843 356666664 45699998
Q ss_pred EEEEEE
Q 031259 151 SGFVDV 156 (163)
Q Consensus 151 ~g~a~v 156 (163)
.+..+.
T Consensus 94 ~~~~~~ 99 (100)
T cd03440 94 TATATF 99 (100)
T ss_pred EEEEEe
Confidence 887654
No 35
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=97.94 E-value=0.00027 Score=51.88 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=55.3
Q ss_pred ceechHHHHHHHHH---HHHHHh---c--cCCCceeeEE-EEEEccccCC-CCeEEEEEEE---EC-cEEEEEEEEecCC
Q 031259 81 PILHGLCTMGFAVR---AIIKFI---C--RGDPNMVKNI-FSRFLLHVYP-GETLVTEMWL---QG-LRVIYQVKVKERN 146 (163)
Q Consensus 81 ~iv~G~l~~a~~~~---~l~~~~---~--~g~~~~~~~~-~~rf~~PV~~-Gd~l~~~~~v---~~-g~v~~~~~~~q~g 146 (163)
.++||.+..=.+++ ++..+. . ++....+.+. +++|++|+++ ||+|+++++. .+ +...+++++..+|
T Consensus 45 ~~~P~~l~iE~mAQa~a~~~g~~~~~~~~~~~~g~l~~i~~~~f~~~v~p~Gd~l~i~~~~~~~~~~~~~~~~~~~~v~~ 124 (138)
T cd01289 45 GRLPAWVGIEYMAQAIAAHGGLLARQQGNPPRPGFLLGSRKYEAHVDRFDLGSTLLIVVAELLQGDSGLGVFECTIEDQG 124 (138)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEEEEEcceeCCCCeeEEEeeeeeeCCCcEEEEEEEEEECC
Confidence 57888775433333 222111 1 1122345554 8999999999 9999998876 33 7788888766789
Q ss_pred eEEEEEEEEEEecC
Q 031259 147 RSALSGFVDVHRLA 160 (163)
Q Consensus 147 ~~v~~g~a~v~~p~ 160 (163)
+++++|+.++..|.
T Consensus 125 ~~va~a~l~~~~p~ 138 (138)
T cd01289 125 GVLASGRLNVYQPA 138 (138)
T ss_pred EEEEEEEEEEEcCC
Confidence 99999999998874
No 36
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=97.94 E-value=0.00023 Score=51.91 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=45.9
Q ss_pred CC-CCceechHHHH---HHHHHHHHHHhcc--CCC-----ceeeE-EEEEEccccCCCC-eEEEEEEEE------CcEEE
Q 031259 77 GF-SRPILHGLCTM---GFAVRAIIKFICR--GDP-----NMVKN-IFSRFLLHVYPGE-TLVTEMWLQ------GLRVI 137 (163)
Q Consensus 77 g~-~~~iv~G~l~~---a~~~~~l~~~~~~--g~~-----~~~~~-~~~rf~~PV~~Gd-~l~~~~~v~------~g~v~ 137 (163)
+| +.+++||.+.+ +.+.+++..+... ... ..+.. .++||++||+||| +|++++++. ++.+.
T Consensus 43 HFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~~~ 122 (138)
T PF07977_consen 43 HFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNVKFRGPVYPGDKTLRIEVEIKKIRRREGGMAI 122 (138)
T ss_dssp STTTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEEEE-S-B-TTE-EEEEEEEEEEEEEEETTEEE
T ss_pred CCCCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEEEECccEeCCCcEEEEEEEEEEeecccCCEEE
Confidence 44 45899999876 3344444444311 111 11233 5899999999999 998888763 35677
Q ss_pred EEEEEecCCeEEEEEE
Q 031259 138 YQVKVKERNRSALSGF 153 (163)
Q Consensus 138 ~~~~~~q~g~~v~~g~ 153 (163)
++..+..+|+.|++++
T Consensus 123 ~~~~~~vdg~~v~~~~ 138 (138)
T PF07977_consen 123 FDGTAYVDGELVAEAE 138 (138)
T ss_dssp EEEEEEETTEEEEEEE
T ss_pred EEEEEEECCEEEEEEC
Confidence 8777767899998764
No 37
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=97.93 E-value=0.00026 Score=45.76 Aligned_cols=69 Identities=23% Similarity=0.228 Sum_probs=47.2
Q ss_pred eechHHHHHHHHHHHHHHh---ccC-CCceeeEEEEEEccccCCCCeEEEEEEEE---CcEEEEEEEE-ecCCeEEE
Q 031259 82 ILHGLCTMGFAVRAIIKFI---CRG-DPNMVKNIFSRFLLHVYPGETLVTEMWLQ---GLRVIYQVKV-KERNRSAL 150 (163)
Q Consensus 82 iv~G~l~~a~~~~~l~~~~---~~g-~~~~~~~~~~rf~~PV~~Gd~l~~~~~v~---~g~v~~~~~~-~q~g~~v~ 150 (163)
++||...++++..+...++ .+. ........+++|.+|+.+||+|++++++. +..+.+++++ ++++++|+
T Consensus 3 ~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~v~~~~~~~~~ 79 (79)
T PF03061_consen 3 IVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVEVEVYSEDGRLCA 79 (79)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEEEEEEETTSCEEE
T ss_pred EEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEEEEEEECCCcEEC
Confidence 5677777777655444433 111 12344578999999999999999999983 4678888885 66776664
No 38
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=97.86 E-value=0.00028 Score=52.61 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=57.0
Q ss_pred CCC-CceechHHHH---HHHHHHHHHHhccCCC--ceeeE-EEEEEccccCCCCeEEEEEEEE----CcEEEEEEEEecC
Q 031259 77 GFS-RPILHGLCTM---GFAVRAIIKFICRGDP--NMVKN-IFSRFLLHVYPGETLVTEMWLQ----GLRVIYQVKVKER 145 (163)
Q Consensus 77 g~~-~~iv~G~l~~---a~~~~~l~~~~~~g~~--~~~~~-~~~rf~~PV~~Gd~l~~~~~v~----~g~v~~~~~~~q~ 145 (163)
+|| .+|+||.+.+ +.+.+.+..|...... ..+.+ .++||++||.|||.+.++++.. .+...+..+..-+
T Consensus 51 HFP~~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~~~~~~~~~~~a~Vd 130 (147)
T COG0764 51 HFPGDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVLPGDQLELEVKLLKSRRLGIGKAKGVATVD 130 (147)
T ss_pred cCCCCCCcchhHHHHHHHHHHHHHHhccccCCccEEEEEEecceeecCccCCCCEEEEEEEEEEecccceEEEEEEEEEC
Confidence 454 5899999865 4455666666533222 23344 5899999999999999998873 2345556565668
Q ss_pred CeEEEEEEEEEEe
Q 031259 146 NRSALSGFVDVHR 158 (163)
Q Consensus 146 g~~v~~g~a~v~~ 158 (163)
|+++++++.....
T Consensus 131 g~~v~~a~~~~~~ 143 (147)
T COG0764 131 GKVVAEAELLFAG 143 (147)
T ss_pred CEEEEEEEEEEEE
Confidence 9999998877653
No 39
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=97.68 E-value=0.0014 Score=45.18 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=54.9
Q ss_pred eechHHHHHHHHHHHHHHhc----cCCCceeeEEEEEEccccCCCCeEEEEEEEE--C-cEEEEEEEE-ecCCeEEEEEE
Q 031259 82 ILHGLCTMGFAVRAIIKFIC----RGDPNMVKNIFSRFLLHVYPGETLVTEMWLQ--G-LRVIYQVKV-KERNRSALSGF 153 (163)
Q Consensus 82 iv~G~l~~a~~~~~l~~~~~----~g~~~~~~~~~~rf~~PV~~Gd~l~~~~~v~--~-g~v~~~~~~-~q~g~~v~~g~ 153 (163)
++||...++++..+...+.. ++......+++++|.+|+.. ++|.+++++. + ..+.+++.+ +++|++++.++
T Consensus 30 ~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~-~~v~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~a~ 108 (113)
T cd03443 30 IVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARG-GDLTARARVVKLGRRLAVVEVEVTDEDGKLVATAR 108 (113)
T ss_pred eEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC-CeEEEEEEEEecCceEEEEEEEEECCCCCEEEEEE
Confidence 78998888888655543321 12333456789999999999 9999999984 2 357777775 45699999999
Q ss_pred EEEE
Q 031259 154 VDVH 157 (163)
Q Consensus 154 a~v~ 157 (163)
+++.
T Consensus 109 ~~~~ 112 (113)
T cd03443 109 GTFA 112 (113)
T ss_pred EEEe
Confidence 8764
No 40
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=97.55 E-value=0.0015 Score=48.73 Aligned_cols=79 Identities=8% Similarity=0.062 Sum_probs=51.1
Q ss_pred CCC-CCceechHHHHHHHHHHHHHHh--ccC--C--C-c---eeeE-EEEEEccccCCCC-eEEEEEEEE-------CcE
Q 031259 76 AGF-SRPILHGLCTMGFAVRAIIKFI--CRG--D--P-N---MVKN-IFSRFLLHVYPGE-TLVTEMWLQ-------GLR 135 (163)
Q Consensus 76 ~g~-~~~iv~G~l~~a~~~~~l~~~~--~~g--~--~-~---~~~~-~~~rf~~PV~~Gd-~l~~~~~v~-------~g~ 135 (163)
.+| +++++||.+..-.+++++.-+. .+. . . . .+.+ .+++|+++|.||| +|++++++. ++.
T Consensus 44 gHFp~~pvmPG~L~iEamaQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l~~e~~i~~~~~~~~~~~ 123 (150)
T cd01287 44 CHFHGDPVMPGSLGLEAMIQLLQFYLIWLGLGTGVDNPRFQGAPGGPGEWKYRGQITPHNKKVTYEVHIKEVGRDGPRPY 123 (150)
T ss_pred CCCCCCCcCchHHHHHHHHHHHHHHHhhcccccccCcccceeEeccceEEEECccCcCCCEEEEEEEEEEEEEccCCccE
Confidence 345 4789999997544443322221 111 0 1 1 1233 4899999999999 899988872 145
Q ss_pred EEEEEEEecCCeEEEEEEE
Q 031259 136 VIYQVKVKERNRSALSGFV 154 (163)
Q Consensus 136 v~~~~~~~q~g~~v~~g~a 154 (163)
+.++..+..+|++|++++-
T Consensus 124 ~~~~~~~~vdg~~v~~a~~ 142 (150)
T cd01287 124 IIADASLWVDGLRIYEAKD 142 (150)
T ss_pred EEEEEEEEECCEEEEEEEc
Confidence 6777766668999998763
No 41
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=97.46 E-value=0.0055 Score=41.05 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=40.5
Q ss_pred ceeeEEEEEEccccCCCCeEEEEEEEEC---cEEEEEEEE-ecCCeEEEEEEEEEE
Q 031259 106 NMVKNIFSRFLLHVYPGETLVTEMWLQG---LRVIYQVKV-KERNRSALSGFVDVH 157 (163)
Q Consensus 106 ~~~~~~~~rf~~PV~~Gd~l~~~~~v~~---g~v~~~~~~-~q~g~~v~~g~a~v~ 157 (163)
..+..++++|++|+++||+|+++.++.+ ..+.+...+ +++|++++.|..+..
T Consensus 52 ~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~ 107 (110)
T cd00586 52 LVVVELEIDYLRPLRLGDRLTVETRVLRLGRKSFTFEQEIFREDGELLATAETVLV 107 (110)
T ss_pred EEEEEeEeeEcCccCCCCEEEEEEEEEecCcEEEEEEEEEECCCCeEEEEEEEEEE
Confidence 3456789999999999999999999843 355666664 346999999988764
No 42
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=97.43 E-value=0.0055 Score=42.02 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=60.3
Q ss_pred CCceechHHHHHHHHHHHHHHhccCCCceeeEEEEEEccccCCCCeEEEEEEE--ECc-EEEEEEEEecCCeEEEEEEEE
Q 031259 79 SRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWL--QGL-RVIYQVKVKERNRSALSGFVD 155 (163)
Q Consensus 79 ~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf~~PV~~Gd~l~~~~~v--~~g-~v~~~~~~~q~g~~v~~g~a~ 155 (163)
++..++|-+++++...++.+.. + +...+..++..|.+|+.++..+.+++++ +++ ..+.++...|+|++++.++++
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~-~-~~~~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~Q~g~~~~~a~~s 91 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTV-P-DDRVPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAVQNGKVIFTATAS 91 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhC-C-CCCCeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEEECCEEEEEEEEE
Confidence 4678999999999987776644 2 3345778999999999999999999988 343 345566677899999998887
Q ss_pred EE
Q 031259 156 VH 157 (163)
Q Consensus 156 v~ 157 (163)
+.
T Consensus 92 f~ 93 (94)
T cd03445 92 FQ 93 (94)
T ss_pred Ee
Confidence 64
No 43
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=97.37 E-value=0.0044 Score=43.64 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=51.5
Q ss_pred eechHHHHHHHHHHHH--HHhccCCCce--eeEEEEEEccccCCCCeEEEEEEEE--Cc-EEEEEEEE-ecCCeEEEEEE
Q 031259 82 ILHGLCTMGFAVRAII--KFICRGDPNM--VKNIFSRFLLHVYPGETLVTEMWLQ--GL-RVIYQVKV-KERNRSALSGF 153 (163)
Q Consensus 82 iv~G~l~~a~~~~~l~--~~~~~g~~~~--~~~~~~rf~~PV~~Gd~l~~~~~v~--~g-~v~~~~~~-~q~g~~v~~g~ 153 (163)
++||-..++++..+.. ......+... -..++++|.+|+..| .|.+++++. ++ ...+++++ +++|++|+.++
T Consensus 34 ~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g-~l~a~a~v~~~gr~~~~~~~~i~~~~g~~va~~~ 112 (117)
T TIGR00369 34 SLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG-KVRAIAQVVHLGRQTGVAEIEIVDEQGRLCALSR 112 (117)
T ss_pred cChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC-EEEEEEEEEecCceEEEEEEEEECCCCCEEEEEE
Confidence 7889888887753331 1111112222 246899999999999 999998883 33 45667774 67899999999
Q ss_pred EEEE
Q 031259 154 VDVH 157 (163)
Q Consensus 154 a~v~ 157 (163)
++..
T Consensus 113 ~t~~ 116 (117)
T TIGR00369 113 GTTA 116 (117)
T ss_pred EEEc
Confidence 8763
No 44
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=97.19 E-value=0.015 Score=40.51 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=48.4
Q ss_pred eechHHHHHHHHHHHHHHh--ccCCCceeeEE-EEEEccccCCCCeEEEEEEEE---CcEEEEEEEE-ec-----CCeEE
Q 031259 82 ILHGLCTMGFAVRAIIKFI--CRGDPNMVKNI-FSRFLLHVYPGETLVTEMWLQ---GLRVIYQVKV-KE-----RNRSA 149 (163)
Q Consensus 82 iv~G~l~~a~~~~~l~~~~--~~g~~~~~~~~-~~rf~~PV~~Gd~l~~~~~v~---~g~v~~~~~~-~q-----~g~~v 149 (163)
++||...+.++..+..... ........... +++|++|+.+||+|.+++++. +..+.+++.+ ++ +++++
T Consensus 24 ~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~g~~~~~~~~~i~~~~~~~~~~~~~ 103 (123)
T cd03442 24 TIFGGWLLEWMDELAGIAAYRHAGGRVVTASVDRIDFLKPVRVGDVVELSARVVYTGRTSMEVGVEVEAEDPLTGERRLV 103 (123)
T ss_pred cEeHHHHHHHHHHHHHHHHHHHhCCcEEEEEECceEEcCccccCcEEEEEEEEEEecCCeEEEEEEEEEecCCCCcEEEE
Confidence 4566666555543322211 11222233455 799999999999999999983 3456666653 33 24688
Q ss_pred EEEEEEEEec
Q 031259 150 LSGFVDVHRL 159 (163)
Q Consensus 150 ~~g~a~v~~p 159 (163)
++|..++..+
T Consensus 104 a~~~~~~v~~ 113 (123)
T cd03442 104 TSAYFTFVAL 113 (123)
T ss_pred EEEEEEEEEE
Confidence 8888877654
No 45
>PRK11688 hypothetical protein; Provisional
Probab=97.18 E-value=0.01 Score=44.08 Aligned_cols=77 Identities=17% Similarity=0.082 Sum_probs=52.6
Q ss_pred CceechHHHHHHHHHHHHHHh---ccC---C-----------CceeeEEEEEEccccCCCCeEEEEEEEE--C-cEEEEE
Q 031259 80 RPILHGLCTMGFAVRAIIKFI---CRG---D-----------PNMVKNIFSRFLLHVYPGETLVTEMWLQ--G-LRVIYQ 139 (163)
Q Consensus 80 ~~iv~G~l~~a~~~~~l~~~~---~~g---~-----------~~~~~~~~~rf~~PV~~Gd~l~~~~~v~--~-g~v~~~ 139 (163)
.-++||-..++++...+.-.. ... . ...-..+++.|.+|+. |++|.+++++. + .+..++
T Consensus 55 ~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~-g~~l~a~a~v~~~g~r~~~~~ 133 (154)
T PRK11688 55 QSILHGGVIASVLDVAGGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVDYLRPGR-GERFTATSSVLRAGNKVAVAR 133 (154)
T ss_pred cCeeeHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceEEEEEEEeeccCC-CCeEEEEEEEEEccCCEEEEE
Confidence 348999988888753332111 110 0 0112468999999995 99999999983 3 355677
Q ss_pred EEE-ecCCeEEEEEEEEEE
Q 031259 140 VKV-KERNRSALSGFVDVH 157 (163)
Q Consensus 140 ~~~-~q~g~~v~~g~a~v~ 157 (163)
+++ +++|++++.+++++.
T Consensus 134 ~~i~~~~g~lvA~a~~t~~ 152 (154)
T PRK11688 134 MELHNEQGVHIASGTATYL 152 (154)
T ss_pred EEEECCCCCEEEEEEEEEE
Confidence 775 678999999998875
No 46
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.17 E-value=0.011 Score=43.16 Aligned_cols=81 Identities=22% Similarity=0.174 Sum_probs=54.4
Q ss_pred CCceechHHHHHHHHHHHHHHh-ccCCC-ce--eeEEEEEEccccCCCCeEEEEEEEE--Cc-EEEEEEEEe--cCCeEE
Q 031259 79 SRPILHGLCTMGFAVRAIIKFI-CRGDP-NM--VKNIFSRFLLHVYPGETLVTEMWLQ--GL-RVIYQVKVK--ERNRSA 149 (163)
Q Consensus 79 ~~~iv~G~l~~a~~~~~l~~~~-~~g~~-~~--~~~~~~rf~~PV~~Gd~l~~~~~v~--~g-~v~~~~~~~--q~g~~v 149 (163)
+.-++||-+.++++..+..-.. ...+. .. -..+++.|.+|+..|+ +++++++. ++ ...+++++. ++++.|
T Consensus 49 ~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~~~g~-v~a~a~v~~~G~~~~v~~i~v~~~~~~~lv 127 (141)
T COG2050 49 PGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPVKEGD-VTAEARVLHLGRRVAVVEIEVKNDEGGRLV 127 (141)
T ss_pred CCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCCCCCe-EEEEEEEEeeCCEEEEEEEEEEECCCCeEE
Confidence 5569999999888754332211 11122 11 2367999999999999 99999883 43 344566653 445899
Q ss_pred EEEEEEEEecC
Q 031259 150 LSGFVDVHRLA 160 (163)
Q Consensus 150 ~~g~a~v~~p~ 160 (163)
+.++.+.....
T Consensus 128 a~~~~t~~v~~ 138 (141)
T COG2050 128 AKGTGTYAVLR 138 (141)
T ss_pred EEEEEEEEEec
Confidence 99998876554
No 47
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=97.11 E-value=0.015 Score=46.07 Aligned_cols=80 Identities=15% Similarity=0.115 Sum_probs=57.4
Q ss_pred CceechHHHHHHHHHHHHHHhccCCCceeeEEEEEEccccCCCCeEEEEEEE--ECc-EEEEEEEEecCCeEEEEEEEEE
Q 031259 80 RPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWL--QGL-RVIYQVKVKERNRSALSGFVDV 156 (163)
Q Consensus 80 ~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf~~PV~~Gd~l~~~~~v--~~g-~v~~~~~~~q~g~~v~~g~a~v 156 (163)
+..+||-++++++..++.... ..+...+..+++.|.+|+.+| .+.+++++ .|+ .-.+++++.|+|++++.+++.+
T Consensus 9 g~~~~GG~~a~~~~~A~~~~~-~~~~~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~q~~~~~~~a~~~f 86 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAARTHA-PPPGFDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELSQDGKVVATATASF 86 (255)
T ss_dssp TTCE-HHHHHHHHHHHHHHCH-TTTSSEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCcChhHHHHHHHHHHHHHhc-cCCCCceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEEECCcCEEEEEEEE
Confidence 557888888877777665533 223457789999999999999 99999988 344 4566777789999999999998
Q ss_pred EecCC
Q 031259 157 HRLAS 161 (163)
Q Consensus 157 ~~p~~ 161 (163)
..+..
T Consensus 87 ~~~~~ 91 (255)
T PF13622_consen 87 GRPEP 91 (255)
T ss_dssp E--TT
T ss_pred ccCcC
Confidence 76653
No 48
>PRK10293 acyl-CoA esterase; Provisional
Probab=97.07 E-value=0.014 Score=42.73 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=52.9
Q ss_pred CceechHHHHHHHHHHH---HHHhccC-CCceeeEEEEEEccccCCCCeEEEEEEEE--Cc-EEEEEEEE-ecCCeEEEE
Q 031259 80 RPILHGLCTMGFAVRAI---IKFICRG-DPNMVKNIFSRFLLHVYPGETLVTEMWLQ--GL-RVIYQVKV-KERNRSALS 151 (163)
Q Consensus 80 ~~iv~G~l~~a~~~~~l---~~~~~~g-~~~~~~~~~~rf~~PV~~Gd~l~~~~~v~--~g-~v~~~~~~-~q~g~~v~~ 151 (163)
.-++||-..++++..+. .....+. ....-.++++.|.+|+..| +|++++++. ++ +..+++++ +++|++++.
T Consensus 50 ~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~~~g-~l~a~a~vv~~Gr~~~~~~~~v~d~~g~l~A~ 128 (136)
T PRK10293 50 FGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREG-RVRGVCKPLHLGSRHQVWQIEIFDEKGRLCCS 128 (136)
T ss_pred cCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEEecccCCc-eEEEEEEEEecCCCEEEEEEEEEeCCCCEEEE
Confidence 34899998888775422 1111121 1222346899999999988 699999883 33 55677775 678999999
Q ss_pred EEEEEE
Q 031259 152 GFVDVH 157 (163)
Q Consensus 152 g~a~v~ 157 (163)
++.++.
T Consensus 129 ~~~t~~ 134 (136)
T PRK10293 129 SRLTTA 134 (136)
T ss_pred EEEEEE
Confidence 998764
No 49
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=97.02 E-value=0.0077 Score=43.08 Aligned_cols=52 Identities=6% Similarity=0.059 Sum_probs=40.8
Q ss_pred ceeeEEEEEEccccCCCCeEEEEEEEEC---cEEEEEEEE-ecCCeEEEEEEEEEE
Q 031259 106 NMVKNIFSRFLLHVYPGETLVTEMWLQG---LRVIYQVKV-KERNRSALSGFVDVH 157 (163)
Q Consensus 106 ~~~~~~~~rf~~PV~~Gd~l~~~~~v~~---g~v~~~~~~-~q~g~~v~~g~a~v~ 157 (163)
..+.+.+++|++|++.||+|.++.++.+ ..+++..++ +++|++++.|..+..
T Consensus 54 ~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~~~s~~~~~~i~~~~g~~~a~~~~~~v 109 (130)
T PRK10800 54 FVVRKMTVEYYAPARLDDMLEVQSEITSMRGTSLTFTQRIVNAEGTLLNEAEVLIV 109 (130)
T ss_pred EEEEEEEEEEcCcccCCCEEEEEEEEEeeCcEEEEEEEEEEcCCCeEEEEEEEEEE
Confidence 3456889999999999999999999843 345565553 568999999987664
No 50
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=97.01 E-value=0.016 Score=38.91 Aligned_cols=77 Identities=12% Similarity=-0.048 Sum_probs=55.1
Q ss_pred CceechHHHHHHHHHHHHHHhccC---CCceeeEEEEEEccccCCCCeEEEEEEEE---CcEEEEEEEE-ecCCeEEEEE
Q 031259 80 RPILHGLCTMGFAVRAIIKFICRG---DPNMVKNIFSRFLLHVYPGETLVTEMWLQ---GLRVIYQVKV-KERNRSALSG 152 (163)
Q Consensus 80 ~~iv~G~l~~a~~~~~l~~~~~~g---~~~~~~~~~~rf~~PV~~Gd~l~~~~~v~---~g~v~~~~~~-~q~g~~v~~g 152 (163)
+..+||-+.++++...+....... ........++.|++|..+|+.+.+++++. ++....++++ +++|+.|+++
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~~~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~G~lva~~ 93 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQRDGKLVASA 93 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCCCCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEECCCCcEEEEE
Confidence 568899888888766554333111 12334578999999999999999999883 3466667775 4569999998
Q ss_pred EEEE
Q 031259 153 FVDV 156 (163)
Q Consensus 153 ~a~v 156 (163)
..+.
T Consensus 94 ~~~~ 97 (99)
T cd00556 94 TQSF 97 (99)
T ss_pred EEeE
Confidence 8765
No 51
>PLN02322 acyl-CoA thioesterase
Probab=97.01 E-value=0.024 Score=42.60 Aligned_cols=77 Identities=18% Similarity=0.111 Sum_probs=51.0
Q ss_pred ceechHHHHHHHHHHH--HHHhccC-CCceeeEEEEEEccccCCCCeEEEEEEEE--Cc-EEEEEEEE-ec------CCe
Q 031259 81 PILHGLCTMGFAVRAI--IKFICRG-DPNMVKNIFSRFLLHVYPGETLVTEMWLQ--GL-RVIYQVKV-KE------RNR 147 (163)
Q Consensus 81 ~iv~G~l~~a~~~~~l--~~~~~~g-~~~~~~~~~~rf~~PV~~Gd~l~~~~~v~--~g-~v~~~~~~-~q------~g~ 147 (163)
-++||-..++++..+. ......+ ....-..+++.|.+|+..||+|++++++. ++ +..+++++ ++ +|+
T Consensus 43 G~vHGGv~atLaDta~g~A~~~~~~~~~~vTiel~infLrpa~~G~~L~Aea~vv~~Gr~~~~~ev~V~~~~~~~~~~~~ 122 (154)
T PLN02322 43 KVLHGGVSALIAESLASLGAHMASGFKRVAGIQLSINHLKSADLGDLVFAEATPVSTGKTIQVWEVKLWKTTDKDKANKI 122 (154)
T ss_pred CCccHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEEEeccCCCCCEEEEEEEEEecCCCEEEEEEEEEECCCCcccCCe
Confidence 4899999888885332 1111111 12223468999999999999999999983 33 44555553 31 267
Q ss_pred EEEEEEEEEE
Q 031259 148 SALSGFVDVH 157 (163)
Q Consensus 148 ~v~~g~a~v~ 157 (163)
.|+.++.++.
T Consensus 123 lva~a~~T~~ 132 (154)
T PLN02322 123 LISSSRVTLI 132 (154)
T ss_pred EEEEEEEEEE
Confidence 8888888874
No 52
>PRK10254 thioesterase; Provisional
Probab=97.00 E-value=0.022 Score=41.81 Aligned_cols=77 Identities=16% Similarity=0.114 Sum_probs=53.1
Q ss_pred CceechHHHHHHHHHH---HHHHhcc-CCCceeeEEEEEEccccCCCCeEEEEEEEE--Cc-EEEEEEEE-ecCCeEEEE
Q 031259 80 RPILHGLCTMGFAVRA---IIKFICR-GDPNMVKNIFSRFLLHVYPGETLVTEMWLQ--GL-RVIYQVKV-KERNRSALS 151 (163)
Q Consensus 80 ~~iv~G~l~~a~~~~~---l~~~~~~-g~~~~~~~~~~rf~~PV~~Gd~l~~~~~v~--~g-~v~~~~~~-~q~g~~v~~ 151 (163)
.-++||-.+++++..+ ......+ +....-..+++.|.+|+..| +|++++++. ++ +..+++++ +++|++++.
T Consensus 50 ~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp~~~g-~l~a~a~vi~~Gr~~~v~~~~v~d~~g~l~a~ 128 (137)
T PRK10254 50 FGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRPVSEG-KVRGVCQPLHLGRQNQSWEIVVFDEQGRRCCT 128 (137)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEeccCcCC-eEEEEEEEEecCcCEEEEEEEEEcCCCCEEEE
Confidence 3489999988887533 2221222 11222236789999999887 799999983 33 55677775 678999999
Q ss_pred EEEEEE
Q 031259 152 GFVDVH 157 (163)
Q Consensus 152 g~a~v~ 157 (163)
++++..
T Consensus 129 ~~~t~~ 134 (137)
T PRK10254 129 CRLGTA 134 (137)
T ss_pred EEEEEE
Confidence 988764
No 53
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=96.88 E-value=0.0039 Score=48.79 Aligned_cols=67 Identities=21% Similarity=0.283 Sum_probs=49.7
Q ss_pred ecCHHHHHHHHh-HhCCCCCCCCCHHHHhhCCCCCceechHHHHHHHHHHHHHHhccCCCceeeEEEEEEccccCCCCeE
Q 031259 47 DYTQPSQALVYR-LSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETL 125 (163)
Q Consensus 47 ~~t~~~~~~fa~-~sgD~nPiH~D~e~A~~~g~~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf~~PV~~Gd~l 125 (163)
.+|++.--.||. +.||+|||| |++. ++-.|||=|.+|+++. + . +.-..++++|.++|-.|-.|
T Consensus 15 ~is~~QAS~FAK~VAgDFNPIH-D~Da------KRFCVPGDLLFalvL~---~-~-----GlS~~M~f~F~GMVg~~v~L 78 (218)
T PF12119_consen 15 SISAEQASRFAKEVAGDFNPIH-DPDA------KRFCVPGDLLFALVLA---K-Y-----GLSQKMRFRFSGMVGDDVPL 78 (218)
T ss_pred EEcHHHHhHHHHHhccCCCccC-CCCC------ccccCccHHHHHHHHH---h-c-----CccceeEEEEeeeecCCcee
Confidence 367888889995 999999999 5543 3569999999999852 2 1 12246789999998777777
Q ss_pred EEEE
Q 031259 126 VTEM 129 (163)
Q Consensus 126 ~~~~ 129 (163)
.+.-
T Consensus 79 ~f~~ 82 (218)
T PF12119_consen 79 HFPE 82 (218)
T ss_pred eccC
Confidence 6643
No 54
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=96.86 E-value=0.014 Score=46.90 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=61.8
Q ss_pred ceechHHHHHHHHHHHHHHhccCCCceeeEEEEEEccccCCCCeEEEEEEE--ECcE-EEEEEEEecCCeEEEEEEEEEE
Q 031259 81 PILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWL--QGLR-VIYQVKVKERNRSALSGFVDVH 157 (163)
Q Consensus 81 ~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf~~PV~~Gd~l~~~~~v--~~g~-v~~~~~~~q~g~~v~~g~a~v~ 157 (163)
.-+.|-+++|+++.++.+.. .+...+.++++.|.+|..++..+.+++++ +|+. ...+++..|+|++++.+++.+.
T Consensus 21 ~~~fGG~~~Aqal~Aa~~tv--~~~~~~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~Q~g~~~~~a~asf~ 98 (271)
T TIGR00189 21 NRVFGGQVVGQALAAASKTV--PEEFIPHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAVQHGKTIFTLQASFQ 98 (271)
T ss_pred CceEccHHHHHHHHHHHhcC--CCCCCcceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEEECCEEEEEEEEEcc
Confidence 36889999999887776644 24456678999999999999999999988 3443 4556667799999999999987
Q ss_pred ecCC
Q 031259 158 RLAS 161 (163)
Q Consensus 158 ~p~~ 161 (163)
.+.+
T Consensus 99 ~~~~ 102 (271)
T TIGR00189 99 AEES 102 (271)
T ss_pred cCCC
Confidence 5544
No 55
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=96.77 E-value=0.016 Score=42.32 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=40.6
Q ss_pred eeeEEEEEEccccCCCCeEEEEEEEE--C-cEEEEEEEEecCCeEEEEEEEEEE
Q 031259 107 MVKNIFSRFLLHVYPGETLVTEMWLQ--G-LRVIYQVKVKERNRSALSGFVDVH 157 (163)
Q Consensus 107 ~~~~~~~rf~~PV~~Gd~l~~~~~v~--~-g~v~~~~~~~q~g~~v~~g~a~v~ 157 (163)
.+.+.+++|++|++.||.|+++.++. + ..+++..++..+++++++|+.++.
T Consensus 58 ~v~~~~i~y~~p~~~~d~l~v~~~v~~~~~~s~~~~~~i~~~~~l~a~~~~~~V 111 (137)
T COG0824 58 VVVEAEIDYLRPARLGDVLTVRTRVEELGGKSLTLGYEIVNEDELLATGETTLV 111 (137)
T ss_pred EEEEEEeEECCCccCCCEEEEEEEEEeecCeEEEEEEEEEeCCEEEEEEEEEEE
Confidence 44678999999999999999999984 2 367777775444499999998765
No 56
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=96.72 E-value=0.02 Score=40.31 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=39.2
Q ss_pred eeeEEEEEEccccCCCCeEEEEEEEEC---cEEEEEEEEecCCeEEEEEEEEEE
Q 031259 107 MVKNIFSRFLLHVYPGETLVTEMWLQG---LRVIYQVKVKERNRSALSGFVDVH 157 (163)
Q Consensus 107 ~~~~~~~rf~~PV~~Gd~l~~~~~v~~---g~v~~~~~~~q~g~~v~~g~a~v~ 157 (163)
.+...+++|++|+..||+|.++.++.+ ..+.+...+..+|++++.|..+..
T Consensus 54 vv~~~~i~y~~~~~~gd~v~v~~~v~~~~~~~~~~~~~i~~~g~~~a~~~~~~v 107 (126)
T TIGR02799 54 VVRSMELDYLKPARLDDLLTVTTRVVELKGASLVFAQEVRRGDTLLCEATVEVA 107 (126)
T ss_pred EEEEEEEEEcCcccCCCEEEEEEEEEecCceEEEEEEEEEeCCEEEEEEEEEEE
Confidence 445789999999999999999999843 345555554457889999887654
No 57
>COG5496 Predicted thioesterase [General function prediction only]
Probab=96.63 E-value=0.11 Score=37.81 Aligned_cols=83 Identities=17% Similarity=0.180 Sum_probs=55.7
Q ss_pred HhhCCCCCceechHHHH--HHHHHHHHHHhccCCCcee-eEEEEEEccccCCCCeEEEEEEE---ECcEEEEEEEEecCC
Q 031259 73 AKAAGFSRPILHGLCTM--GFAVRAIIKFICRGDPNMV-KNIFSRFLLHVYPGETLVTEMWL---QGLRVIYQVKVKERN 146 (163)
Q Consensus 73 A~~~g~~~~iv~G~l~~--a~~~~~l~~~~~~g~~~~~-~~~~~rf~~PV~~Gd~l~~~~~v---~~g~v~~~~~~~q~g 146 (163)
+..++-...++-+.+.. -.+...+.+-.++.+-..+ ....+|-.+|+.+|.++++.+++ +|+.++|++....+|
T Consensus 22 ~~~~~~~~VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~V~i~~~l~~v~Gr~v~f~i~a~~~~ 101 (130)
T COG5496 22 AEGSGMLNVLATPAMIGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLTVTIGARLEKVEGRKVKFRIIAMEGG 101 (130)
T ss_pred hHhCCccceeehHHHHHHHHHHHHHHHHhhCcCCcceeeEEEEeeeccCCCCCCeEEEEEEEEEEeccEEEEEEEEeeCC
Confidence 44455555666665432 1222233333444433333 45799999999999999999887 567899999866889
Q ss_pred eEEEEEEEE
Q 031259 147 RSALSGFVD 155 (163)
Q Consensus 147 ~~v~~g~a~ 155 (163)
+.+.+|+-+
T Consensus 102 ~~Ig~g~h~ 110 (130)
T COG5496 102 DKIGEGTHT 110 (130)
T ss_pred cEEeeeEEE
Confidence 999888754
No 58
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=96.51 E-value=0.048 Score=44.68 Aligned_cols=81 Identities=12% Similarity=0.088 Sum_probs=62.9
Q ss_pred CCceechHHHHHHHHHHHHHHhccCCCceeeEEEEEEccccCCCCeEEEEEEE--ECc-EEEEEEEEecCCeEEEEEEEE
Q 031259 79 SRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWL--QGL-RVIYQVKVKERNRSALSGFVD 155 (163)
Q Consensus 79 ~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf~~PV~~Gd~l~~~~~v--~~g-~v~~~~~~~q~g~~v~~g~a~ 155 (163)
+...+.|-+++|.++.++.+.. .+...+.++++.|.+|.-++..|.++++. +|+ ..+.++...|+|+++++.++.
T Consensus 30 ~~r~~fGGqv~AQal~AA~~tv--~~~~~~hSlh~~Fl~pg~~~~pi~y~Ve~lRdGRSfstr~V~a~Q~g~~if~~~~s 107 (286)
T PRK10526 30 GLRQVFGGQVVGQALYAAKETV--PEERLVHSFHSYFLRPGDSQKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTAS 107 (286)
T ss_pred CCCceechHHHHHHHHHHHhcC--CCCCCceEEEEEcCCCCCCCCCEEEEEEEEeCCCceEeEEEEEEECCEEEEEEEEE
Confidence 3467899999999877666544 23445678999999999999999999987 343 345566678999999999999
Q ss_pred EEecCC
Q 031259 156 VHRLAS 161 (163)
Q Consensus 156 v~~p~~ 161 (163)
+..+++
T Consensus 108 F~~~e~ 113 (286)
T PRK10526 108 FQAPEA 113 (286)
T ss_pred eccCCC
Confidence 877655
No 59
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=95.93 E-value=0.14 Score=35.76 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=35.7
Q ss_pred ceeeEEEEEEccccCCCCeEEEEEEEE---CcEEEEEEEE-e-cCCeE--EEEEEEEEE
Q 031259 106 NMVKNIFSRFLLHVYPGETLVTEMWLQ---GLRVIYQVKV-K-ERNRS--ALSGFVDVH 157 (163)
Q Consensus 106 ~~~~~~~~rf~~PV~~Gd~l~~~~~v~---~g~v~~~~~~-~-q~g~~--v~~g~a~v~ 157 (163)
..+.+.+++|++|+..||+++++.++. +..+.+...+ + ++|+. +++|..+..
T Consensus 44 ~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~s~~~~~~i~~~~~g~~~~~a~~~~~~v 102 (121)
T PF13279_consen 44 FVVAESEIDYLRPLRFGDRLEVETRVEEIGGKSFRFEQEIFRPADGKGELAATGRTVMV 102 (121)
T ss_dssp EEEEEEEEEE-S--BTTSEEEEEEEEEEEESSEEEEEEEEEECSTTEEEEEEEEEEEEE
T ss_pred EEEEEEEEEEcccccCCCEEEEEEEEEEECCcEEEEEEEEEEcCCCceEEEEEEEEEEE
Confidence 345678999999999999999998883 4567776664 2 36655 777776653
No 60
>PRK10694 acyl-CoA esterase; Provisional
Probab=95.73 E-value=0.42 Score=34.79 Aligned_cols=60 Identities=12% Similarity=-0.037 Sum_probs=37.5
Q ss_pred eechHHHHHHHHHHHHH--HhccCCCceeeEE-EEEEccccCCCCeEEEEEEEE--C-cEEEEEEE
Q 031259 82 ILHGLCTMGFAVRAIIK--FICRGDPNMVKNI-FSRFLLHVYPGETLVTEMWLQ--G-LRVIYQVK 141 (163)
Q Consensus 82 iv~G~l~~a~~~~~l~~--~~~~g~~~~~~~~-~~rf~~PV~~Gd~l~~~~~v~--~-g~v~~~~~ 141 (163)
.+||-.++.++..+..- ....+.......+ .+.|.+|++.||.|++++++. + ..+.++++
T Consensus 28 ~lfGG~ll~~~D~~a~i~a~~~~~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g~sS~~v~v~ 93 (133)
T PRK10694 28 DIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKTGTTSISINIE 93 (133)
T ss_pred cEeHHHHHHHHHHHHHHHHHHHcCCceEEEEECceEECCCcccCcEEEEEEEEEEccCceEEEEEE
Confidence 77787777766532211 1112233344455 679999999999999999984 2 34554443
No 61
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=95.65 E-value=0.15 Score=34.96 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=34.8
Q ss_pred eeeEEEEEEccccCCCCeEEEEEEEEC---cEEEEEEEE-ecCCeEEEEEEE
Q 031259 107 MVKNIFSRFLLHVYPGETLVTEMWLQG---LRVIYQVKV-KERNRSALSGFV 154 (163)
Q Consensus 107 ~~~~~~~rf~~PV~~Gd~l~~~~~v~~---g~v~~~~~~-~q~g~~v~~g~a 154 (163)
.+...+++|++|+..||+|+++.++.+ ..+++..++ +++++.+..+..
T Consensus 50 ~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 101 (117)
T TIGR00051 50 VVVNINIEYKKPARLDDVLEIRTQIEELNGFSFVFSQEIFNEDEALLKAATV 101 (117)
T ss_pred EEEEEEEEECCcccCCCEEEEEEEEEecCcEEEEEEEEEEeCCCcEEEeeEE
Confidence 456789999999999999999999853 345666553 455655554444
No 62
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=95.35 E-value=0.4 Score=35.00 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=44.7
Q ss_pred eechHHHHHHHH--HH-HH----HHhccCCCceeeEEEEEEccccCCCCeEEEEEEE------------EC--cEEEEEE
Q 031259 82 ILHGLCTMGFAV--RA-II----KFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWL------------QG--LRVIYQV 140 (163)
Q Consensus 82 iv~G~l~~a~~~--~~-l~----~~~~~g~~~~~~~~~~rf~~PV~~Gd~l~~~~~v------------~~--g~v~~~~ 140 (163)
.+||-..++++. .. +. .....+......+.+++|.+|+..+-..++++.. .+ ..+.+++
T Consensus 39 ~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl~P~~~~~~a~~~~~~~~~~~~~~~~l~~~gr~~~~~~~ 118 (138)
T TIGR02447 39 TMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYLAPVTGDPVANCEAPDLESWEAFLATLQRGGKARVKLEA 118 (138)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEcCCcCCCeEEEEEcCCHHHHHHHHHHHHhCCceEEEEEE
Confidence 778877666652 11 11 1111111223456899999999864333444421 12 3566777
Q ss_pred EEecCCeEEEEEEEEEE
Q 031259 141 KVKERNRSALSGFVDVH 157 (163)
Q Consensus 141 ~~~q~g~~v~~g~a~v~ 157 (163)
++.++|+.|+.++.+..
T Consensus 119 ~v~~~~~lvA~~~g~~~ 135 (138)
T TIGR02447 119 QISSDGKLAATFSGEYV 135 (138)
T ss_pred EEEECCEEEEEEEEEEE
Confidence 76678899999887765
No 63
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=94.66 E-value=0.54 Score=35.03 Aligned_cols=80 Identities=20% Similarity=0.145 Sum_probs=52.7
Q ss_pred eechHHHHHHHHHHHHHHh---ccCCCceeeEEEEEEccccCCCCeEEEEEEEE--Cc-E--EEEEEEEecCCeEEEEEE
Q 031259 82 ILHGLCTMGFAVRAIIKFI---CRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQ--GL-R--VIYQVKVKERNRSALSGF 153 (163)
Q Consensus 82 iv~G~l~~a~~~~~l~~~~---~~g~~~~~~~~~~rf~~PV~~Gd~l~~~~~v~--~g-~--v~~~~~~~q~g~~v~~g~ 153 (163)
..||-+++.++........ .+..+..-..+++.|..|+.+||+|.+++.+. |+ + +.++.+...+|++.+.|.
T Consensus 55 ~LHGG~tAtLvD~i~s~~~~~~~~~~~gvsvdLsvsyL~~AklGe~l~i~a~~vr~Gk~la~t~v~l~~K~t~kiia~gr 134 (148)
T KOG3328|consen 55 TLHGGATATLVDLITSAALLMTSGFKPGVSVDLSVSYLSSAKLGEELEIEATVVRVGKTLAFTDVELRRKSTGKIIAKGR 134 (148)
T ss_pred cccccchhhHHHHHhhHHHHhccCCCCceEEEEEhhhccccCCCCeEEEEEEEeecCceEEEEEEEEEEcCCCeEEEecc
Confidence 6788888877754333211 12234445678999999999999999999983 43 3 233444456799999887
Q ss_pred EE-EEecCC
Q 031259 154 VD-VHRLAS 161 (163)
Q Consensus 154 a~-v~~p~~ 161 (163)
.+ ...|.+
T Consensus 135 htk~~~~~~ 143 (148)
T KOG3328|consen 135 HTKYFRPAS 143 (148)
T ss_pred eEEEeecCC
Confidence 54 445443
No 64
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=94.58 E-value=0.92 Score=34.18 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=44.0
Q ss_pred eechHHHHHHHHHHH---HHHhccCCCceeeEE-EEEEccccCCCCeEEEEEEEE--Cc---EEEEEEEE-e---cCCeE
Q 031259 82 ILHGLCTMGFAVRAI---IKFICRGDPNMVKNI-FSRFLLHVYPGETLVTEMWLQ--GL---RVIYQVKV-K---ERNRS 148 (163)
Q Consensus 82 iv~G~l~~a~~~~~l---~~~~~~g~~~~~~~~-~~rf~~PV~~Gd~l~~~~~v~--~g---~v~~~~~~-~---q~g~~ 148 (163)
-+||-+.++++.... ....+.+ ......+ ++.|.+||+.||.|.+.+++. |. .|.++++. + +.-+.
T Consensus 30 ~ifGG~lm~~mD~~a~i~A~~~a~~-~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~GrTSm~V~Vev~~~~~~~~~~~~ 108 (157)
T COG1607 30 TIFGGWLLSWMDLAAAIAASRHAGG-RVVTASVDSVDFKKPVRVGDIVCLYARVVYTGRTSMEVGVEVWAEDIRSGERRL 108 (157)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhCC-eEEEEEeceEEEccccccCcEEEEEEEEeecCcccEEEEEEEEEecccCCcceE
Confidence 367777777764321 1122222 1122233 899999999999999999984 32 24445543 2 22334
Q ss_pred EEEEEEEEEec
Q 031259 149 ALSGFVDVHRL 159 (163)
Q Consensus 149 v~~g~a~v~~p 159 (163)
+.++..+..++
T Consensus 109 ~t~~~ft~VAv 119 (157)
T COG1607 109 ATSAYFTFVAV 119 (157)
T ss_pred eeeEEEEEEEE
Confidence 55566655543
No 65
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.11 E-value=0.41 Score=42.17 Aligned_cols=51 Identities=14% Similarity=0.016 Sum_probs=40.4
Q ss_pred eeeEEEEEEccccCCCCeEEEEEEEEC---cEEEEEEEE-ecCCeEEEEEEEEEE
Q 031259 107 MVKNIFSRFLLHVYPGETLVTEMWLQG---LRVIYQVKV-KERNRSALSGFVDVH 157 (163)
Q Consensus 107 ~~~~~~~rf~~PV~~Gd~l~~~~~v~~---g~v~~~~~~-~q~g~~v~~g~a~v~ 157 (163)
.+.+.+++|++|++.||+|+++.++.+ ..++++.++ +.+|+++++|+.++.
T Consensus 397 vvv~~~i~y~rp~~~gD~v~I~t~v~~~~~~s~~~~~~i~~~~g~l~A~g~~~~v 451 (495)
T PRK07531 397 YTVETHIRHLGEAKAGQALHVETQLLSGDEKRLHLFHTLYDAGGELIATAEHMLL 451 (495)
T ss_pred EEEEEEEEEcccCCCCCEEEEEEEEEecCCcEEEEEEEEECCCCcEEEEEEEEEE
Confidence 456789999999999999999999843 356666663 567899999887654
No 66
>PLN02868 acyl-CoA thioesterase family protein
Probab=94.06 E-value=0.5 Score=40.56 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=58.9
Q ss_pred ceechHHHHHHHHHHHHHHhccCCCceeeEEEEEEccccCCCCeEEEEEEE--ECc-EEEEEEEEecCCeEEEEEEEEEE
Q 031259 81 PILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWL--QGL-RVIYQVKVKERNRSALSGFVDVH 157 (163)
Q Consensus 81 ~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf~~PV~~Gd~l~~~~~v--~~g-~v~~~~~~~q~g~~v~~g~a~v~ 157 (163)
.-++|-+++|+++.++.... .+...+..+++.|..|-.++..+.+++++ +|+ ..+.++...|+|+++++..+++.
T Consensus 158 ~~~fGG~~~aqal~Aa~~~~--~~~~~~~s~~~~Fl~~~~~~~pv~~~V~~lr~Grs~~~r~v~~~Q~g~~~~~~~~sf~ 235 (413)
T PLN02868 158 GKVFGGQLVGQALAAASKTV--DPLKLVHSLHAYFLLVGDINLPIIYQVERIRDGHNFATRRVDAIQKGKVIFTLFASFQ 235 (413)
T ss_pred ccccchHHHHHHHHHHHccC--CCCCCceEeeeeecCCCCCCCCEEEEEEEEcCCCceEeeEEEEEECCeeEEEEeeccc
Confidence 45789999998877666543 23456778999999888887779888887 343 34556667899999999998887
Q ss_pred ecCC
Q 031259 158 RLAS 161 (163)
Q Consensus 158 ~p~~ 161 (163)
.+.+
T Consensus 236 ~~~~ 239 (413)
T PLN02868 236 KEEQ 239 (413)
T ss_pred cCCC
Confidence 6544
No 67
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=90.78 E-value=3.9 Score=29.17 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=38.4
Q ss_pred eeeEEEEEEccccCCCCeEEEEEEEE------Cc--EEEEEEEEecCCeEEEEEEEEEE
Q 031259 107 MVKNIFSRFLLHVYPGETLVTEMWLQ------GL--RVIYQVKVKERNRSALSGFVDVH 157 (163)
Q Consensus 107 ~~~~~~~rf~~PV~~Gd~l~~~~~v~------~g--~v~~~~~~~q~g~~v~~g~a~v~ 157 (163)
.+.+++++|..++...-.+.+++++. ++ ...+++.+.|+|++++++++++.
T Consensus 73 ~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~q~g~~~a~~~~~~t 131 (132)
T PF03756_consen 73 VLTSLDFTFSRFAELDVPADLTVRITCRDRRGGRPRGLRFRVTVSQGGRVVATASMTFT 131 (132)
T ss_pred EEEEEEEEEccccccCCCEEEEEEEEeccccCCccceEEEEEEEEECCEEEEEEEEEEE
Confidence 45678999999997777777777662 12 35666667899999999998764
No 68
>PLN02647 acyl-CoA thioesterase
Probab=89.32 E-value=8.4 Score=33.74 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.1
Q ss_pred eeeEE-EEEEccccCCCCeEEEEEEE
Q 031259 107 MVKNI-FSRFLLHVYPGETLVTEMWL 131 (163)
Q Consensus 107 ~~~~~-~~rf~~PV~~Gd~l~~~~~v 131 (163)
....+ ++.|.+||..||.|.+++.|
T Consensus 334 vt~svd~v~F~~PV~vGdil~l~A~V 359 (437)
T PLN02647 334 YFLEVDHVDFLRPVDVGDFLRFKSCV 359 (437)
T ss_pred EEEEecceEecCccccCcEEEEEEEE
Confidence 34444 89999999999999998877
No 69
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=87.89 E-value=8.1 Score=27.74 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=29.7
Q ss_pred eEEEEEEccccCCCCeEEEEEEEE------CcEEEEEEEE-ecCCeEEEEEEEEE
Q 031259 109 KNIFSRFLLHVYPGETLVTEMWLQ------GLRVIYQVKV-KERNRSALSGFVDV 156 (163)
Q Consensus 109 ~~~~~rf~~PV~~Gd~l~~~~~v~------~g~v~~~~~~-~q~g~~v~~g~a~v 156 (163)
.+.+++|++| .-.+|+++++.. +....+.+.+ +.+|+.|+.++.++
T Consensus 78 k~~~i~f~kp--a~g~v~a~~~~~~e~~~~~~~~~~~v~i~D~~G~~Va~~~~t~ 130 (132)
T PF14539_consen 78 KSAEIDFLKP--ARGDVTATAELTEEQIGERGELTVPVEITDADGEVVAEATITW 130 (132)
T ss_dssp EEEEEEE-S-----S-EEEEEE-TCCHCCHEEEEEEEEEEEETTC-EEEEEEEEE
T ss_pred EeeEEEEEec--cCCcEEEEEEcCHHHhCCCcEEEEEEEEEECCCCEEEEEEEEE
Confidence 5789999999 667788888772 2345666664 78999999999876
No 70
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=85.81 E-value=5.7 Score=32.85 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=58.4
Q ss_pred CCceechHHHHHHHHHHHHHHhccCCCceeeEEEEEEccccCCCCeEEEEEEE--ECcEE-EEEEEEecCCeEEEEEEEE
Q 031259 79 SRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWL--QGLRV-IYQVKVKERNRSALSGFVD 155 (163)
Q Consensus 79 ~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf~~PV~~Gd~l~~~~~v--~~g~v-~~~~~~~q~g~~v~~g~a~ 155 (163)
+..-+.|-.+.|.++-++.+.. .+...+.++..-|.+|.-+-+.|...++. +|+.+ +-++.+-|+|++++..++.
T Consensus 30 g~~~vFGGqvvaQAL~Aa~~TV--~~~r~vhSlh~yFl~pgd~~~pi~y~Ve~lRdG~sfs~rrV~aiQ~g~~If~~~AS 107 (289)
T COG1946 30 GLRRVFGGQVVAQALVAALRTV--PEDRVVHSLHSYFLRPGDPEQPIIYDVERLRDGRSFSTRRVDAIQHGKLIFSATAS 107 (289)
T ss_pred CCccccccchHHHHHHHHHhhc--CCCCCcceehhhhcCCCCcCCceEEEEEeccCCCceEeEEEEEEECCEEEEEEEee
Confidence 4556777777777765555543 22334557888999999999999999988 44444 4566677999999999998
Q ss_pred EEecC
Q 031259 156 VHRLA 160 (163)
Q Consensus 156 v~~p~ 160 (163)
+..+.
T Consensus 108 F~~~e 112 (289)
T COG1946 108 FQVPE 112 (289)
T ss_pred ccCCC
Confidence 86554
No 71
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=84.25 E-value=11 Score=28.01 Aligned_cols=51 Identities=16% Similarity=0.028 Sum_probs=27.5
Q ss_pred eeeEEEEEEccccCCCCeEEEEEEE------------ECc--EEEEEEEEecCCeEEEEEEEEEE
Q 031259 107 MVKNIFSRFLLHVYPGETLVTEMWL------------QGL--RVIYQVKVKERNRSALSGFVDVH 157 (163)
Q Consensus 107 ~~~~~~~rf~~PV~~Gd~l~~~~~v------------~~g--~v~~~~~~~q~g~~v~~g~a~v~ 157 (163)
.+..-++||++||.-+=+.++.... .++ ++++++.+.++|+.+++.+....
T Consensus 77 Vi~~~~i~Y~~Pv~~d~~A~~~~~~~~~~~~~~~~l~~~grari~l~~~i~~~~~~~a~f~G~yv 141 (144)
T PF09500_consen 77 VIADSNIRYLKPVTGDFTARCSLPEPEDWERFLQTLARGGRARITLEVEIYSGGELAAEFTGRYV 141 (144)
T ss_dssp EEEEEEEEE-S---S--EEEEE-------S---GGGGCTS-EEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEeCceEEcCCCCCCcEEEEeccccchhHHHHHHHHcCCcEEEEEEEEEEECCEEEEEEEEEEE
Confidence 3456799999998876444444431 134 45666666678888888776654
No 72
>PLN02370 acyl-ACP thioesterase
Probab=79.82 E-value=19 Score=31.34 Aligned_cols=51 Identities=8% Similarity=-0.012 Sum_probs=38.1
Q ss_pred eeeEEEEEEccccCCCCeEEEEEEEEC--c-EEEEEEEE-e-cCCeEEEEEEEEEE
Q 031259 107 MVKNIFSRFLLHVYPGETLVTEMWLQG--L-RVIYQVKV-K-ERNRSALSGFVDVH 157 (163)
Q Consensus 107 ~~~~~~~rf~~PV~~Gd~l~~~~~v~~--g-~v~~~~~~-~-q~g~~v~~g~a~v~ 157 (163)
.+.+.++.|.+|..-||+|+++.++.+ + ......++ + ++|++++.++.++.
T Consensus 198 VLtr~~I~~~R~P~~gD~V~V~Twv~~~~k~~~~Rdf~I~D~~~Ge~la~A~SvWV 253 (419)
T PLN02370 198 VVTRMQVLVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVRDCKTGETLTRASSVWV 253 (419)
T ss_pred EEEEEEEEeCcCCCCCCEEEEEEEEeeCCCCEEEEEEEEEECCCCeEEEEEEEEEE
Confidence 455789999999999999999999853 2 23333333 4 37999999988764
No 73
>PLN02647 acyl-CoA thioesterase
Probab=79.72 E-value=42 Score=29.45 Aligned_cols=47 Identities=13% Similarity=-0.021 Sum_probs=31.5
Q ss_pred EEEEccccCCCCeEEEEEEEE--C-cEEEEEEEEec--------CCeEEEEEEEEEEe
Q 031259 112 FSRFLLHVYPGETLVTEMWLQ--G-LRVIYQVKVKE--------RNRSALSGFVDVHR 158 (163)
Q Consensus 112 ~~rf~~PV~~Gd~l~~~~~v~--~-g~v~~~~~~~q--------~g~~v~~g~a~v~~ 158 (163)
++.|.+|+.+||.|.+.+.|. | ..+++.+++.+ +...++++..++.+
T Consensus 151 ~i~F~~Pi~~g~~v~l~g~Vt~vGrSSMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA 208 (437)
T PLN02647 151 KIVLKKPIRVDVDLKIVGAVTWVGRSSMEIQLEVIQPTKDESNTSDSVALTANFTFVA 208 (437)
T ss_pred cEEEcCCCcCCcEEEEEEEEEEecCCeEEEEEEEEEccccCCCCcEEEEEEEEEEEEE
Confidence 799999999999999999984 3 23444443211 22356677666644
No 74
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=77.18 E-value=24 Score=28.30 Aligned_cols=80 Identities=9% Similarity=0.055 Sum_probs=47.7
Q ss_pred CCCCceechHHHHHHHHHHHHHHhccC---CCceeeEEEEEEccccCCCCeEEEEEEEE----CcEEEEEEEE-ecCCeE
Q 031259 77 GFSRPILHGLCTMGFAVRAIIKFICRG---DPNMVKNIFSRFLLHVYPGETLVTEMWLQ----GLRVIYQVKV-KERNRS 148 (163)
Q Consensus 77 g~~~~iv~G~l~~a~~~~~l~~~~~~g---~~~~~~~~~~rf~~PV~~Gd~l~~~~~v~----~g~v~~~~~~-~q~g~~ 148 (163)
++.++=.+|-...+.-...+.+.+ +. ....+..+++.|.+.+..||+|.+...+. ...+.+...+ +++|+.
T Consensus 173 r~sDiD~N~HVNN~~Yl~w~~d~l-p~~~~~~~~~~~i~I~y~~E~~~gd~i~~~~~~~~~~~~~~~~~~h~i~~~~g~~ 251 (261)
T PF01643_consen 173 RYSDIDMNGHVNNARYLDWALDAL-PEEFLEKYQIKSIDINYKKEIRYGDTITSYTEVEKDEEEDGLSTLHEIRNEDGEE 251 (261)
T ss_dssp -GGGEETTTCE-HHHHHHHHHCCS--HHHHCCEEEEEEEEEE-S--BTT-EEEEEEEEEEECCTTEEEEEEEEECT-TCE
T ss_pred cHHHCCCCCCcCHHHHHHHHHHhC-cchhhccCCcEEEEEEEccccCCCCEEEEEEEEcccccCCceEEEEEEEcCCCce
Confidence 344555566666666555555533 11 23457789999999999999999877642 3455665554 445999
Q ss_pred EEEEEEEEE
Q 031259 149 ALSGFVDVH 157 (163)
Q Consensus 149 v~~g~a~v~ 157 (163)
++.+...+.
T Consensus 252 ~~~~~~~W~ 260 (261)
T PF01643_consen 252 VARARTEWQ 260 (261)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEc
Confidence 999887764
No 75
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=68.68 E-value=58 Score=27.07 Aligned_cols=79 Identities=11% Similarity=0.127 Sum_probs=53.7
Q ss_pred CCCceechHHHHHHHHHHHHHHhccCCCceeeEEEEEEccccCCCCeEEEEEEE--ECcEEEEE-EEEecCCeEEEEEEE
Q 031259 78 FSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWL--QGLRVIYQ-VKVKERNRSALSGFV 154 (163)
Q Consensus 78 ~~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf~~PV~~Gd~l~~~~~v--~~g~v~~~-~~~~q~g~~v~~g~a 154 (163)
++.-.+.|...++.++.+..... .+.-..-++++-|.+-.-+...|...++. +|..+..+ +++-|+|++|....+
T Consensus 35 ~~~~~~fGG~i~sQaLaAA~~TV--~e~f~p~SlH~YFI~~gd~~~pI~Y~V~rirdGr~F~~R~V~AvQ~~k~If~~qi 112 (294)
T KOG3016|consen 35 IPSNHAYGGQIASQALAAASKTV--EEMFIPHSLHCYFILVGDPNIPIIYDVKRIRDGRNFATRSVDAVQKGKTIFTLQI 112 (294)
T ss_pred ccCcccccceehHHHHHHHHhcc--ccccccceeeeeeeecCCCCCceEEEeeeecCCceeEEEEEEEEECCeEEEEEEE
Confidence 33445556566666554443322 23334567999999999999999999887 34444444 446799999999999
Q ss_pred EEEe
Q 031259 155 DVHR 158 (163)
Q Consensus 155 ~v~~ 158 (163)
++.+
T Consensus 113 SF~~ 116 (294)
T KOG3016|consen 113 SFQQ 116 (294)
T ss_pred EEcc
Confidence 8873
No 76
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=66.98 E-value=24 Score=25.90 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=30.8
Q ss_pred eEEEEEEccccCCCCeEEEEEEE-----ECcEEEEEEEEecCCe
Q 031259 109 KNIFSRFLLHVYPGETLVTEMWL-----QGLRVIYQVKVKERNR 147 (163)
Q Consensus 109 ~~~~~rf~~PV~~Gd~l~~~~~v-----~~g~v~~~~~~~q~g~ 147 (163)
..+.+.|..||-||+++++...- .+|...|.+.....|+
T Consensus 89 ~~i~I~f~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G~ 132 (146)
T PF10989_consen 89 RTITITFDEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPPGD 132 (146)
T ss_pred CEEEEEeCCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEEECCCC
Confidence 46799999999999999999854 3588888887544444
No 77
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=65.33 E-value=44 Score=24.44 Aligned_cols=42 Identities=14% Similarity=-0.065 Sum_probs=27.5
Q ss_pred EEEEccccCCCCeEEEEEEE---ECcE--EEEEEEEecCCeEEEEEE
Q 031259 112 FSRFLLHVYPGETLVTEMWL---QGLR--VIYQVKVKERNRSALSGF 153 (163)
Q Consensus 112 ~~rf~~PV~~Gd~l~~~~~v---~~g~--v~~~~~~~q~g~~v~~g~ 153 (163)
.+.|++|...+|-|....+. .+++ +.=+...+|+|+.|++..
T Consensus 81 s~wFHrpfr~ddWlLY~~~sp~A~~~Rgl~~G~~f~~q~G~Lvas~~ 127 (131)
T PF02551_consen 81 SMWFHRPFRADDWLLYAIESPSASGGRGLVRGRFFDTQDGELVASVV 127 (131)
T ss_dssp EEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCEEECTTEEEEEEE
T ss_pred eEEEcCCCCCCCCEEEEEEcCccccCcccccCceEecCCCCEEEEEe
Confidence 68999999999999988876 3443 443333379999998743
No 78
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.79 E-value=22 Score=28.50 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=42.6
Q ss_pred CCCCCceechHHHHHHHHHHHHHHhccCCC---ceeeEEEEEEccccCCCCeEEEEEEE---ECcEEEEEEE
Q 031259 76 AGFSRPILHGLCTMGFAVRAIIKFICRGDP---NMVKNIFSRFLLHVYPGETLVTEMWL---QGLRVIYQVK 141 (163)
Q Consensus 76 ~g~~~~iv~G~l~~a~~~~~l~~~~~~g~~---~~~~~~~~rf~~PV~~Gd~l~~~~~v---~~g~v~~~~~ 141 (163)
.|+++ ++||-+...++...+.....+.-+ ..-..+++.|..|++....+.++... .|+...+..+
T Consensus 138 ~gy~~-~iHgG~IATllde~L~~c~fl~~pnk~~vTanLsisy~~pip~~~f~vi~t~~~~~~Grk~~~~g~ 208 (237)
T KOG4781|consen 138 TGYPG-LVHGGAIATLLDEALAMCAFLALPNKIGVTANLSISYKRPIPTNHFVVIRTQLDKVEGRKCKTFGE 208 (237)
T ss_pred cCCCC-ccchHHHHHHHHHHHHHhhcccCCchhheeeecccccCCCcccceEEEEecchhhhcCcccceeeE
Confidence 46777 778877777776666543322222 22236899999999999999888766 3444555444
No 79
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=62.91 E-value=60 Score=25.94 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=35.2
Q ss_pred ceeeEEEEEEccccCCCCeEEEEEEEEC--cEEEEEE-EE-e-cCCeEEEEEEEEEE
Q 031259 106 NMVKNIFSRFLLHVYPGETLVTEMWLQG--LRVIYQV-KV-K-ERNRSALSGFVDVH 157 (163)
Q Consensus 106 ~~~~~~~~rf~~PV~~Gd~l~~~~~v~~--g~v~~~~-~~-~-q~g~~v~~g~a~v~ 157 (163)
..+.+..+++.++-.-||+|+++.+..+ +....+- .+ + ++|++++.++..+.
T Consensus 61 Wvl~r~~i~i~r~P~~~e~i~i~Tw~~~~~~~~~~R~f~i~d~~~G~~l~~a~s~Wv 117 (261)
T PF01643_consen 61 WVLSRYQIEIHRYPRWGEKITIETWPSGFKRFFAYRDFEIYDAEDGELLARATSIWV 117 (261)
T ss_dssp EEEEEEEEEESS--BTT-EEEEEEEEEEE-SSEEEEEEEEE--TTS-EEEEEEEEEE
T ss_pred EEEEEEEEEEEecCCCCCEEEEEEEeccCCCcEEEEEEEEEECCCCcEEEEEEEEEE
Confidence 3456789999999999999999999843 4443333 33 4 69999999988764
No 80
>PLN02370 acyl-ACP thioesterase
Probab=60.37 E-value=95 Score=27.12 Aligned_cols=53 Identities=11% Similarity=-0.037 Sum_probs=38.2
Q ss_pred ceeeEEEEEEccccCCCCeEEEEEEEE---------CcEEEEEEE-EecCCeEEEEEEEEEEe
Q 031259 106 NMVKNIFSRFLLHVYPGETLVTEMWLQ---------GLRVIYQVK-VKERNRSALSGFVDVHR 158 (163)
Q Consensus 106 ~~~~~~~~rf~~PV~~Gd~l~~~~~v~---------~g~v~~~~~-~~q~g~~v~~g~a~v~~ 158 (163)
..+..+++.|++.+..||+|....... .+.+.+... ..++|+.++.+...+.+
T Consensus 340 ~~l~~i~I~Y~kE~~~gd~V~s~~~~~~~~~~~~~~~~~~~~~h~~~~~dG~e~a~a~t~Wr~ 402 (419)
T PLN02370 340 HELAAITLEYRRECGRDSVLQSLTAVSGTGIGNLGTAGDVECQHLLRLEDGAEIVRGRTEWRP 402 (419)
T ss_pred ceEEEEEEEEcccCCCCCEEEEEEeecccccccccCCCcceEEEEEEcCCCeEEEEEEEEEEE
Confidence 356789999999999999999775541 122233333 25789999999988764
No 81
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=53.89 E-value=68 Score=21.84 Aligned_cols=44 Identities=11% Similarity=-0.046 Sum_probs=32.7
Q ss_pred EEEEEEccccCCCCeEEEEEEE---ECcEEEEEEEE-ecCCeEEEEEE
Q 031259 110 NIFSRFLLHVYPGETLVTEMWL---QGLRVIYQVKV-KERNRSALSGF 153 (163)
Q Consensus 110 ~~~~rf~~PV~~Gd~l~~~~~v---~~g~v~~~~~~-~q~g~~v~~g~ 153 (163)
...++|+.|....|=+..+.+. .+|+...+..+ +++|+.|++..
T Consensus 52 dhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~~~~G~LvAs~~ 99 (104)
T cd03444 52 DHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIFTRDGELVASVA 99 (104)
T ss_pred eEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEECCCCCEEEEEE
Confidence 4589999999887777666665 34666666664 78899998765
No 82
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=52.59 E-value=1.1e+02 Score=24.03 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=46.7
Q ss_pred CCCceechHHHHHHHHHHHHHHhccCCCceeeEEEEEEccccCC--CCeEEEEEEE--E-Cc----EEEEEEEE-ecCC-
Q 031259 78 FSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYP--GETLVTEMWL--Q-GL----RVIYQVKV-KERN- 146 (163)
Q Consensus 78 ~~~~iv~G~l~~a~~~~~l~~~~~~g~~~~~~~~~~rf~~PV~~--Gd~l~~~~~v--~-~g----~v~~~~~~-~q~g- 146 (163)
.+.+|+||..-+.++..++.... +.. .+.-.+++|.+|+.. ++...+.+++ . ++ .+.+++.. ++++
T Consensus 36 ~g~~i~Pga~~le~~~~Aa~~~~-~~~--~~~l~~~~~~~pl~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~s~~~~~~ 112 (295)
T PF14765_consen 36 QGQPILPGAAYLEMALEAARQLS-PSS--VVELRDLRFHRPLVLDEGEPRELRVELDPEEDGSGSMEWRFEIFSRNKDDS 112 (295)
T ss_dssp TTEEEE-HHHHHHHHHHHHHHHT-CSS--EEEEEEEEE-S-EEE-TTTEEEEEEEEEEETTTTEEEEEEEEEEEEESTCC
T ss_pred CCEeeehhHHHHHHHHHHHHHhh-Ccc--cceEEEeEecccEEecCCCcEEEEEEEEEccCCCCccceEEEEEEecCCCc
Confidence 45689999998888887766543 222 333348999999963 5666666555 3 22 24666653 3333
Q ss_pred --eEEEEEEEEEEe
Q 031259 147 --RSALSGFVDVHR 158 (163)
Q Consensus 147 --~~v~~g~a~v~~ 158 (163)
..+++|.+.+..
T Consensus 113 ~~~~h~~g~v~~~~ 126 (295)
T PF14765_consen 113 GWTLHASGQVSLDK 126 (295)
T ss_dssp GEEEEEEEEEEEES
T ss_pred ceEEeeeeEEEeee
Confidence 577778877654
No 83
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=39.68 E-value=1.5e+02 Score=25.60 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=41.6
Q ss_pred CceechHHHHHHHHHHHHHHhc--cCCCceeeEEEEEEccccCCCCeEEEEEEEE--C-cEEEEEEEEecCCeEEEEEE
Q 031259 80 RPILHGLCTMGFAVRAIIKFIC--RGDPNMVKNIFSRFLLHVYPGETLVTEMWLQ--G-LRVIYQVKVKERNRSALSGF 153 (163)
Q Consensus 80 ~~iv~G~l~~a~~~~~l~~~~~--~g~~~~~~~~~~rf~~PV~~Gd~l~~~~~v~--~-g~v~~~~~~~q~g~~v~~g~ 153 (163)
|.+.+|.++.-+. ....+.+. .+..-.+-.+.+-|.+||...++|++..++- + ..-.++++.-.+|..|..+-
T Consensus 348 Gtis~gv~~~ll~-e~~qr~l~k~~~~niiIE~i~iyflk~vqid~~l~I~prIl~~gR~~a~idvei~~~~~ivaKAi 425 (432)
T COG4109 348 GTISNGVFTELLT-EVVQRVLRKKKKRNIIIENITIYFLKPVQIDSVLEIYPRILEEGRKFAKIDVEIYHDGQIVAKAI 425 (432)
T ss_pred ccchHHHHHHHHH-HHHHHHHHHhcCCceEEEeeeeeeecceecccEEEEeeeeeccccccceeEEEEeeCcchhhhhe
Confidence 5577777654332 22221111 1122234467999999999999999999983 2 22445555433455555443
No 84
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=38.44 E-value=1.5e+02 Score=23.42 Aligned_cols=44 Identities=14% Similarity=0.003 Sum_probs=31.8
Q ss_pred EEEEEEccccCCCCeEEEEEEEE---CcEEEEEEEE-ecCCeEEEEEE
Q 031259 110 NIFSRFLLHVYPGETLVTEMWLQ---GLRVIYQVKV-KERNRSALSGF 153 (163)
Q Consensus 110 ~~~~rf~~PV~~Gd~l~~~~~v~---~g~v~~~~~~-~q~g~~v~~g~ 153 (163)
...+.|++++..++=+.++.+.. +|+-..+.++ +.+|+.|++..
T Consensus 218 dhtv~fh~~~~~~~W~l~~~~s~~~~~Grg~~~~~l~d~~G~lvAs~~ 265 (271)
T TIGR00189 218 DHSIWFHRPFRADDWLLYKCSSPSASGSRGLVEGKIFTRDGVLIASTV 265 (271)
T ss_pred eeeEEEeCCCCCCeeEEEEEEeccccCCceEEEEEEECCCCCEEEEEE
Confidence 45799999988888888877762 3444444443 78999998765
No 85
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=37.20 E-value=75 Score=27.17 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=22.4
Q ss_pred eeeEE-EEEEccccCCCCeEEEEEEE
Q 031259 107 MVKNI-FSRFLLHVYPGETLVTEMWL 131 (163)
Q Consensus 107 ~~~~~-~~rf~~PV~~Gd~l~~~~~v 131 (163)
.++.+ .+.|.+||-+|+.|++.+.+
T Consensus 243 ~~rsVD~i~F~~pVdvG~~L~f~s~V 268 (357)
T KOG2763|consen 243 ATRSVDDIEFQKPVDVGCVLTFSSFV 268 (357)
T ss_pred eEEEechhhccCcceeeeEEEEeeEE
Confidence 66666 79999999999999999988
No 86
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=36.93 E-value=1.5e+02 Score=23.32 Aligned_cols=43 Identities=19% Similarity=0.061 Sum_probs=33.5
Q ss_pred EEEEEc-cccCCCCeEEEEEEEE---CcEEEEEEE-EecCCeEEEEEE
Q 031259 111 IFSRFL-LHVYPGETLVTEMWLQ---GLRVIYQVK-VKERNRSALSGF 153 (163)
Q Consensus 111 ~~~rf~-~PV~~Gd~l~~~~~v~---~g~v~~~~~-~~q~g~~v~~g~ 153 (163)
-++++. .|..+++.+++.++.. ++.+++++. ++++|++++.-+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~v~d~~G~~~~~~~ 282 (295)
T PF14765_consen 235 ERIRIFRAPPPPGDRLYVYARLVKSDDDTITGDVTVFDEDGRVVAELE 282 (295)
T ss_dssp EEEEESSS--SSTSEEEEEEEEESTTTTEEEEEEEEEETTSBEEEEEE
T ss_pred CEEEEEeccCCCCCEEEEEEEEecccceEEEEEEEEECCCCCEEEEEc
Confidence 479999 5888999999999884 368888888 478999988744
No 87
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=33.95 E-value=60 Score=26.24 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=22.8
Q ss_pred eeeEEEEEEccccCCCCeEEEEEEEE
Q 031259 107 MVKNIFSRFLLHVYPGETLVTEMWLQ 132 (163)
Q Consensus 107 ~~~~~~~rf~~PV~~Gd~l~~~~~v~ 132 (163)
...++.+.+.+||.+|++|++..++.
T Consensus 192 ~p~r~~l~y~keva~G~~iti~~e~~ 217 (250)
T COG3884 192 GPLRLTLEYVKEVAPGEKITIVYEVH 217 (250)
T ss_pred ccceeEEEEEcccCCCCeEEEEEEEc
Confidence 34678999999999999999998884
No 88
>PF06059 DUF930: Domain of Unknown Function (DUF930); InterPro: IPR009273 This is a family of bacterial proteins with undetermined function. All bacteria in this family are from the Rhizobiales order.
Probab=31.41 E-value=1.1e+02 Score=21.31 Aligned_cols=46 Identities=13% Similarity=-0.044 Sum_probs=35.3
Q ss_pred EEEEccccCCCCeEEEEEEE--ECc---EEEEEEEEecCCeEEEEEEEEEE
Q 031259 112 FSRFLLHVYPGETLVTEMWL--QGL---RVIYQVKVKERNRSALSGFVDVH 157 (163)
Q Consensus 112 ~~rf~~PV~~Gd~l~~~~~v--~~g---~v~~~~~~~q~g~~v~~g~a~v~ 157 (163)
...|..|+.-|++|.+..-. .++ .+.|+++++.+...|.+.+-.+-
T Consensus 36 ~~~~~~~~~~g~~l~a~gaAFRs~g~WY~l~F~C~vd~d~~~V~sF~~~vG 86 (101)
T PF06059_consen 36 SYAFSDPKISGNVLDAPGAAFRSRGKWYDLSFRCEVDPDATKVTSFSFKVG 86 (101)
T ss_pred ccccCCccccCCEEecCCcEEecCCeEEEEEEEEEECCCceEEEEEeeccC
Confidence 68899999999999887443 233 36778888888888988877663
No 89
>PF14230 DUF4333: Domain of unknown function (DUF4333)
Probab=28.73 E-value=1.5e+02 Score=19.39 Aligned_cols=33 Identities=21% Similarity=0.140 Sum_probs=25.1
Q ss_pred EEEEEEccccCCCCeEEEEEEEECcEEEEEEEE
Q 031259 110 NIFSRFLLHVYPGETLVTEMWLQGLRVIYQVKV 142 (163)
Q Consensus 110 ~~~~rf~~PV~~Gd~l~~~~~v~~g~v~~~~~~ 142 (163)
+.++-=-.++.+|.+.++.+++.+....+.+.+
T Consensus 43 sV~Cp~~~~~~~G~tf~C~vt~~G~~~~v~Vtv 75 (80)
T PF14230_consen 43 SVTCPGDLEVEVGATFTCTVTVDGETQTVTVTV 75 (80)
T ss_pred EeECCCCCcccCCceEEEEEEeCCEEEEEEEEE
Confidence 366666678889999999988777666666665
No 90
>PHA00098 hypothetical protein
Probab=28.36 E-value=25 Score=24.54 Aligned_cols=30 Identities=27% Similarity=0.244 Sum_probs=19.2
Q ss_pred eecCHHHHHHHH-hHhC----CCCCCCCCHHHHhh
Q 031259 46 EDYTQPSQALVY-RLSG----DYNPLHSDPMVAKA 75 (163)
Q Consensus 46 ~~~t~~~~~~fa-~~sg----D~nPiH~D~e~A~~ 75 (163)
+++..+..+++. ..+| ..+|+|+|++||+.
T Consensus 29 ~~Vn~Ekf~r~~lG~~~dvp~~~qpL~Id~~YA~~ 63 (112)
T PHA00098 29 ETVNVEKFAQYGLGLNTDIPFNKQPLRIEPTYAKR 63 (112)
T ss_pred hhhhHHHHHHhccccCCCcCcCCCceEeCHHHHHH
Confidence 344445555554 2444 46799999999974
No 91
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=27.44 E-value=2.7e+02 Score=22.58 Aligned_cols=44 Identities=11% Similarity=-0.072 Sum_probs=31.3
Q ss_pred EEEEEEccccCCCCeEEEEEEEE---CcEEEEEEEE-ecCCeEEEEEE
Q 031259 110 NIFSRFLLHVYPGETLVTEMWLQ---GLRVIYQVKV-KERNRSALSGF 153 (163)
Q Consensus 110 ~~~~rf~~PV~~Gd~l~~~~~v~---~g~v~~~~~~-~q~g~~v~~g~ 153 (163)
...++|+.|+.++|=+..+.+.. +|+-..+..+ +++|+.|++..
T Consensus 230 dhsi~Fh~~~~~d~W~L~~~~s~~a~~gr~~~~g~i~~~~G~LvAs~~ 277 (286)
T PRK10526 230 DHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTV 277 (286)
T ss_pred eEeEEEeCCCCCCceEEEEEECCcccCCceEEEEEEECCCCCEEEEEE
Confidence 34789999999988888877762 3443333342 78999998865
No 92
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=27.29 E-value=1.3e+02 Score=19.87 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=15.1
Q ss_pred ccccCCCCeEEEEEEEECcEEEEEEEEe
Q 031259 116 LLHVYPGETLVTEMWLQGLRVIYQVKVK 143 (163)
Q Consensus 116 ~~PV~~Gd~l~~~~~v~~g~v~~~~~~~ 143 (163)
...++|||+|.+...-++.+..++...+
T Consensus 40 L~~L~pGq~l~f~~d~~g~L~~L~~~~~ 67 (85)
T PF04225_consen 40 LTRLKPGQTLEFQLDEDGQLTALRYERS 67 (85)
T ss_dssp GGG--TT-EEEEEE-TTS-EEEEEEEEE
T ss_pred HhhCCCCCEEEEEECCCCCEEEEEEEcC
Confidence 4457899999888765555556655543
No 93
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=26.43 E-value=3e+02 Score=22.85 Aligned_cols=39 Identities=15% Similarity=-0.084 Sum_probs=29.3
Q ss_pred EEEEccccCCCCeEEEEEEEE---C--cEEEEEEEEecCCeEEEE
Q 031259 112 FSRFLLHVYPGETLVTEMWLQ---G--LRVIYQVKVKERNRSALS 151 (163)
Q Consensus 112 ~~rf~~PV~~Gd~l~~~~~v~---~--g~v~~~~~~~q~g~~v~~ 151 (163)
.++|++|+..+|=|....+.. + |.+.-++ .+++|+.+++
T Consensus 232 s~wFhrp~~~ddWlLy~~~sp~A~~~rgl~~G~l-f~r~G~LiA~ 275 (289)
T COG1946 232 SMWFHRPFRLDDWLLYAQESPSASGGRGLVRGQL-FDRDGQLIAS 275 (289)
T ss_pred eEEEeccccCCCEEEEEeeCCcccCCcceeeeEE-EcCCCCEEEE
Confidence 799999999999998887762 2 3444433 3688998776
No 94
>PF07703 A2M_N_2: Alpha-2-macroglobulin family N-terminal region; InterPro: IPR011625 This is a domain of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; PDB: 2QKI_D 3L3O_D 3NMS_A 2ICF_A 2A73_A 2ICE_D 2HR0_A 2A74_A 2XWJ_G 3OHX_A ....
Probab=24.74 E-value=2.3e+02 Score=19.56 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=18.9
Q ss_pred cccCCCCeEEEEEEEECc--EEEEEEEEecCCeEEEEEEEE
Q 031259 117 LHVYPGETLVTEMWLQGL--RVIYQVKVKERNRSALSGFVD 155 (163)
Q Consensus 117 ~PV~~Gd~l~~~~~v~~g--~v~~~~~~~q~g~~v~~g~a~ 155 (163)
....+||++.+.+..... .+.+.+ -.+|+++..+...
T Consensus 8 ~~~~~Ge~~~v~v~~~~~~~~~~~~v--~s~g~I~~~~~~~ 46 (136)
T PF07703_consen 8 DSYKPGETAKVTVQSPFPNGTFLYLV--ESRGKIVSTGSVE 46 (136)
T ss_dssp SSB-TTSEEEEEEEEESCESEEEEEE--EETTEEEEEEEEE
T ss_pred CCcCCCCEEEEEEEcCCCccEEEEEE--EECCeEEEEEEEE
Confidence 455678887777666432 222222 2345555555443
No 95
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=24.69 E-value=1.6e+02 Score=19.74 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=18.0
Q ss_pred CCCeEEEEEEEEC------cEEEEEEEEecCCeEEEEEEEEE
Q 031259 121 PGETLVTEMWLQG------LRVIYQVKVKERNRSALSGFVDV 156 (163)
Q Consensus 121 ~Gd~l~~~~~v~~------g~v~~~~~~~q~g~~v~~g~a~v 156 (163)
+||+|.-..++.| +.+.+++. +.+|+++.++.++.
T Consensus 10 pg~~V~sp~~V~G~A~~FEgtv~~rv~-D~~g~vl~e~~~~a 50 (88)
T PF10648_consen 10 PGDTVSSPVKVSGKARVFEGTVNIRVR-DGHGEVLAEGFVTA 50 (88)
T ss_pred CcCCcCCCEEEEEEEEEeeeEEEEEEE-cCCCcEEEEeeEEe
Confidence 5555555444433 33444332 45677776666554
No 96
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=22.99 E-value=4.1e+02 Score=21.49 Aligned_cols=50 Identities=12% Similarity=0.039 Sum_probs=37.7
Q ss_pred EEEEEccccCCCCeEEEEEEE--------ECcEEEEEEEEecCCeEEEEEEEEEEecC
Q 031259 111 IFSRFLLHVYPGETLVTEMWL--------QGLRVIYQVKVKERNRSALSGFVDVHRLA 160 (163)
Q Consensus 111 ~~~rf~~PV~~Gd~l~~~~~v--------~~g~v~~~~~~~q~g~~v~~g~a~v~~p~ 160 (163)
+.++-+-|+--++.|.++..- ..|.+.+++.+...++..+...-++..|+
T Consensus 260 v~v~d~iPvs~~~~I~V~~~~~~~~~~~~~~g~~~W~~~l~~g~~~~l~~~y~v~~Pk 317 (317)
T PF13598_consen 260 VTVEDQIPVSEDEDIKVELLEPPEPNEDEKDGILEWKVTLPPGESRTLEFSYEVEYPK 317 (317)
T ss_pred EEEEeCCCCCCCceEEEEEcCCCCCcccCCCCEEEEEEEECCCCEEEEEEEEEEEcCC
Confidence 456666677777778776654 23789999888788888998888888875
No 97
>PLN02868 acyl-CoA thioesterase family protein
Probab=22.44 E-value=2.5e+02 Score=23.96 Aligned_cols=43 Identities=9% Similarity=-0.093 Sum_probs=31.0
Q ss_pred EEEEEccccCCCCeEEEEEEE---ECcEEEEEEEE-ecCCeEEEEEE
Q 031259 111 IFSRFLLHVYPGETLVTEMWL---QGLRVIYQVKV-KERNRSALSGF 153 (163)
Q Consensus 111 ~~~rf~~PV~~Gd~l~~~~~v---~~g~v~~~~~~-~q~g~~v~~g~ 153 (163)
..++|+.|+.++|=+..+.+. .+|+...+..+ +++|+.|++..
T Consensus 362 hsi~Fh~~~~~d~W~l~~~~s~~a~~gr~~~~g~l~~~~G~LvAs~~ 408 (413)
T PLN02868 362 HSMWFHRPFRADDWLLFVIVSPAAHNGRGFATGHMFNRKGELVVSLT 408 (413)
T ss_pred eeEEEecCCCCCceEEEEEECCccCCCcceEEEEEECCCCCEEEEEE
Confidence 479999999898888777766 23444334442 78999998864
No 98
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=21.36 E-value=3.9e+02 Score=20.62 Aligned_cols=46 Identities=20% Similarity=0.080 Sum_probs=31.9
Q ss_pred eEEEEEE-ccccCCCCeEEEEEEE---ECcEEEEEEEE-ecCCeEEEEEEE
Q 031259 109 KNIFSRF-LLHVYPGETLVTEMWL---QGLRVIYQVKV-KERNRSALSGFV 154 (163)
Q Consensus 109 ~~~~~rf-~~PV~~Gd~l~~~~~v---~~g~v~~~~~~-~q~g~~v~~g~a 154 (163)
....++| +.|...++=+.++.+. .+|+...+..+ +++|+.|+++.=
T Consensus 201 ld~ti~f~~~p~~~~~Wl~~~~~~~~~~~Gr~~~~~~l~d~~G~lvA~~~Q 251 (255)
T PF13622_consen 201 LDHTIHFHRLPFDGDEWLLLEARSPRAGNGRALMEGRLWDEDGRLVASSRQ 251 (255)
T ss_dssp EEEEEEECSHCCTTTS-EEEEEEEEEEETTEEEEEEEEEETTS-EEEEEEE
T ss_pred ceeEEEEEeCCccCCceEEEEEEEeEeCCCEEEEEEEEECCCCCEEEEEEE
Confidence 3567886 6676668888887765 46787777774 789999888653
No 99
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=21.31 E-value=1.3e+02 Score=24.56 Aligned_cols=49 Identities=12% Similarity=-0.065 Sum_probs=33.6
Q ss_pred EEEEEEccccCCCCeEEEEEEE------EC--c---EEEEEEEEecCCeEEEEEEEEEEe
Q 031259 110 NIFSRFLLHVYPGETLVTEMWL------QG--L---RVIYQVKVKERNRSALSGFVDVHR 158 (163)
Q Consensus 110 ~~~~rf~~PV~~Gd~l~~~~~v------~~--g---~v~~~~~~~q~g~~v~~g~a~v~~ 158 (163)
+-.++|+.|+..|++.++.-++ .+ + .|++.....++|+.++.=.-++..
T Consensus 82 ~G~l~f~~pl~lgqe~t~~e~Iq~i~ek~g~~g~ltfvT~~h~~~~~~~l~l~Err~ivY 141 (273)
T COG3777 82 GGELVFHLPLRLGQEYTCHETIQYIEEKHGRSGELTFVTVPHVYSSPGQLCLFERRTIVY 141 (273)
T ss_pred cceEEEecceecCceeehhHHHHHHHHhcccccceeEEeccceeccCcceeeeeeeeEEE
Confidence 4579999999999999886544 11 2 244333456788888876665554
Done!