Query 031260
Match_columns 163
No_of_seqs 131 out of 1133
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 11:34:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 1.8E-30 3.9E-35 165.5 16.7 148 4-154 11-158 (160)
2 KOG0027 Calmodulin and related 100.0 8.6E-28 1.9E-32 155.7 17.4 147 7-153 2-150 (151)
3 PTZ00183 centrin; Provisional 99.9 5.4E-25 1.2E-29 143.7 17.4 148 5-154 9-156 (158)
4 PTZ00184 calmodulin; Provision 99.9 1E-24 2.3E-29 141.0 16.7 146 5-152 3-148 (149)
5 KOG0028 Ca2+-binding protein ( 99.9 1.4E-23 3E-28 131.4 15.3 146 5-152 25-170 (172)
6 KOG0030 Myosin essential light 99.9 2.1E-23 4.5E-28 127.7 13.1 147 4-151 2-150 (152)
7 KOG0031 Myosin regulatory ligh 99.9 9.3E-23 2E-27 126.9 15.6 143 4-152 23-165 (171)
8 KOG0034 Ca2+/calmodulin-depend 99.9 7.7E-20 1.7E-24 120.6 15.1 144 5-154 25-177 (187)
9 KOG0037 Ca2+-binding protein, 99.9 9.8E-20 2.1E-24 120.0 15.3 133 12-153 56-189 (221)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 6E-19 1.3E-23 116.5 13.5 145 5-154 21-177 (193)
11 KOG0036 Predicted mitochondria 99.8 7.9E-17 1.7E-21 115.2 15.4 141 6-154 7-148 (463)
12 PLN02964 phosphatidylserine de 99.6 5.2E-14 1.1E-18 108.2 13.5 121 5-132 135-273 (644)
13 KOG4223 Reticulocalbin, calume 99.5 2E-13 4.2E-18 95.3 10.5 146 9-154 73-230 (325)
14 PF13499 EF-hand_7: EF-hand do 99.5 1.3E-13 2.7E-18 77.0 7.8 62 89-150 1-66 (66)
15 cd05022 S-100A13 S-100A13: S-1 99.5 9.2E-14 2E-18 81.4 7.3 66 88-153 8-76 (89)
16 KOG0038 Ca2+-binding kinase in 99.5 1.5E-12 3.2E-17 81.0 12.0 147 7-160 22-184 (189)
17 KOG4223 Reticulocalbin, calume 99.5 3.8E-13 8.2E-18 93.9 8.9 139 10-148 160-301 (325)
18 KOG0037 Ca2+-binding protein, 99.5 8.8E-13 1.9E-17 87.4 9.9 92 12-112 123-216 (221)
19 cd05027 S-100B S-100B: S-100B 99.5 7.9E-13 1.7E-17 77.6 8.2 66 88-153 8-80 (88)
20 KOG0377 Protein serine/threoni 99.4 1.8E-11 3.9E-16 89.0 14.7 138 14-153 465-616 (631)
21 KOG0027 Calmodulin and related 99.4 5.2E-12 1.1E-16 81.8 10.2 104 48-154 7-115 (151)
22 PF13499 EF-hand_7: EF-hand do 99.4 4.5E-12 9.8E-17 70.6 7.4 61 14-74 1-65 (66)
23 cd05022 S-100A13 S-100A13: S-1 99.4 6.3E-12 1.4E-16 73.7 8.0 71 9-79 4-77 (89)
24 PTZ00183 centrin; Provisional 99.4 2.7E-11 5.9E-16 78.9 11.4 102 49-153 17-119 (158)
25 cd05031 S-100A10_like S-100A10 99.3 8.2E-12 1.8E-16 74.5 8.0 66 88-153 8-80 (94)
26 cd05029 S-100A6 S-100A6: S-100 99.3 1.1E-11 2.4E-16 72.7 8.0 66 88-153 10-80 (88)
27 cd05027 S-100B S-100B: S-100B 99.3 1.8E-11 3.8E-16 71.8 8.7 70 9-78 4-80 (88)
28 cd05025 S-100A1 S-100A1: S-100 99.3 1.5E-11 3.2E-16 73.1 8.4 66 88-153 9-81 (92)
29 PF13833 EF-hand_8: EF-hand do 99.3 1.4E-11 3E-16 65.9 6.8 52 101-152 1-53 (54)
30 cd05026 S-100Z S-100Z: S-100Z 99.3 2E-11 4.3E-16 72.5 8.1 66 88-153 10-82 (93)
31 KOG0044 Ca2+ sensor (EF-Hand s 99.3 2.2E-11 4.8E-16 80.8 9.0 104 13-116 64-175 (193)
32 PTZ00184 calmodulin; Provision 99.3 1E-10 2.2E-15 75.3 11.3 102 49-153 11-113 (149)
33 smart00027 EH Eps15 homology d 99.3 2.7E-11 6E-16 72.5 7.8 65 88-154 10-74 (96)
34 cd00052 EH Eps15 homology doma 99.3 2.4E-11 5.2E-16 67.8 7.0 61 91-153 2-62 (67)
35 smart00027 EH Eps15 homology d 99.3 5.6E-11 1.2E-15 71.1 8.9 71 6-78 3-73 (96)
36 COG5126 FRQ1 Ca2+-binding prot 99.3 1.7E-10 3.7E-15 74.2 10.7 101 49-153 20-121 (160)
37 cd00213 S-100 S-100: S-100 dom 99.2 5.7E-11 1.2E-15 70.0 7.6 66 88-153 8-80 (88)
38 KOG2562 Protein phosphatase 2 99.2 1.3E-10 2.8E-15 84.9 10.5 132 11-148 276-420 (493)
39 cd00051 EFh EF-hand, calcium b 99.2 1E-10 2.3E-15 63.8 7.9 61 90-150 2-62 (63)
40 cd05025 S-100A1 S-100A1: S-100 99.2 2E-10 4.4E-15 68.2 8.8 71 9-79 5-82 (92)
41 cd05029 S-100A6 S-100A6: S-100 99.2 1.8E-10 4E-15 67.5 8.1 71 8-78 5-80 (88)
42 cd00213 S-100 S-100: S-100 dom 99.2 2.2E-10 4.7E-15 67.5 8.1 70 9-78 4-80 (88)
43 PLN02964 phosphatidylserine de 99.2 4.5E-10 9.7E-15 86.9 11.6 103 48-153 142-244 (644)
44 KOG0040 Ca2+-binding actin-bun 99.2 5.7E-10 1.2E-14 91.0 12.4 136 6-150 2246-2396(2399)
45 cd05031 S-100A10_like S-100A10 99.2 2.8E-10 6E-15 67.9 8.2 69 10-78 5-80 (94)
46 cd05023 S-100A11 S-100A11: S-1 99.2 3.2E-10 6.9E-15 66.7 8.0 66 88-153 9-81 (89)
47 cd05026 S-100Z S-100Z: S-100Z 99.2 4.1E-10 8.8E-15 66.9 8.6 70 9-78 6-82 (93)
48 KOG2643 Ca2+ binding protein, 99.2 4.6E-10 1E-14 81.6 10.1 133 15-155 320-456 (489)
49 cd00252 SPARC_EC SPARC_EC; ext 99.2 6.2E-10 1.3E-14 68.4 9.2 61 88-152 48-108 (116)
50 KOG0028 Ca2+-binding protein ( 99.1 1.2E-09 2.7E-14 69.2 10.1 104 49-155 33-137 (172)
51 PF14658 EF-hand_9: EF-hand do 99.1 3.9E-10 8.5E-15 61.4 6.8 62 92-153 2-65 (66)
52 KOG4251 Calcium binding protei 99.1 7.3E-10 1.6E-14 75.1 8.9 145 8-152 96-309 (362)
53 cd00052 EH Eps15 homology doma 99.1 4.8E-10 1E-14 62.5 6.8 60 16-77 2-61 (67)
54 PF13833 EF-hand_8: EF-hand do 99.1 6.3E-10 1.4E-14 59.4 6.5 51 26-76 1-52 (54)
55 cd00051 EFh EF-hand, calcium b 99.1 1.3E-09 2.9E-14 59.3 7.6 61 15-75 2-62 (63)
56 KOG0034 Ca2+/calmodulin-depend 99.1 5.8E-09 1.2E-13 69.3 11.3 101 16-116 69-175 (187)
57 cd05030 calgranulins Calgranul 99.0 1.3E-09 2.7E-14 64.1 7.0 66 88-153 8-80 (88)
58 cd05023 S-100A11 S-100A11: S-1 99.0 4.7E-09 1E-13 61.7 8.5 70 9-78 5-81 (89)
59 cd00252 SPARC_EC SPARC_EC; ext 98.9 8.7E-09 1.9E-13 63.4 7.9 59 49-114 48-106 (116)
60 cd05030 calgranulins Calgranul 98.9 1.2E-08 2.7E-13 59.9 7.6 70 9-78 4-80 (88)
61 KOG0041 Predicted Ca2+-binding 98.9 1.8E-08 3.8E-13 66.4 7.9 66 88-153 99-164 (244)
62 PF14658 EF-hand_9: EF-hand do 98.8 2.8E-08 6.1E-13 54.2 6.5 60 17-76 2-63 (66)
63 KOG0031 Myosin regulatory ligh 98.8 7.4E-08 1.6E-12 60.9 7.9 65 12-76 100-164 (171)
64 KOG0036 Predicted mitochondria 98.8 1.2E-07 2.7E-12 68.8 10.1 100 48-154 13-112 (463)
65 KOG2643 Ca2+ binding protein, 98.7 4.5E-07 9.7E-12 66.4 12.1 131 13-151 233-383 (489)
66 PF12763 EF-hand_4: Cytoskelet 98.7 6.8E-08 1.5E-12 58.2 6.7 70 4-76 1-70 (104)
67 KOG0041 Predicted Ca2+-binding 98.7 2.8E-07 6E-12 60.8 9.5 110 5-115 91-202 (244)
68 PF00036 EF-hand_1: EF hand; 98.7 4E-08 8.6E-13 45.1 3.8 27 90-116 2-28 (29)
69 cd05024 S-100A10 S-100A10: A s 98.7 4.5E-07 9.7E-12 53.0 8.3 65 88-153 8-77 (91)
70 KOG0751 Mitochondrial aspartat 98.6 2.9E-06 6.3E-11 63.3 12.8 107 8-119 31-139 (694)
71 PF00036 EF-hand_1: EF hand; 98.6 1.5E-07 3.3E-12 43.2 3.9 28 125-152 1-28 (29)
72 PF12763 EF-hand_4: Cytoskelet 98.5 7.5E-07 1.6E-11 53.7 7.6 62 87-151 9-70 (104)
73 KOG0030 Myosin essential light 98.5 3.6E-07 7.8E-12 56.9 5.8 64 11-75 86-149 (152)
74 PF13405 EF-hand_6: EF-hand do 98.5 2.2E-07 4.7E-12 43.5 3.8 30 89-118 1-31 (31)
75 cd05024 S-100A10 S-100A10: A s 98.5 2.4E-06 5.2E-11 49.9 8.8 69 9-78 4-77 (91)
76 KOG0751 Mitochondrial aspartat 98.4 1.3E-06 2.8E-11 65.1 8.1 123 15-147 110-239 (694)
77 KOG0169 Phosphoinositide-speci 98.4 8.9E-06 1.9E-10 63.6 12.6 144 7-157 130-279 (746)
78 PF13405 EF-hand_6: EF-hand do 98.4 6.6E-07 1.4E-11 41.8 3.6 30 14-43 1-31 (31)
79 PRK12309 transaldolase/EF-hand 98.4 2.3E-06 5E-11 63.3 7.9 54 87-153 333-386 (391)
80 KOG0038 Ca2+-binding kinase in 98.3 4.7E-06 1E-10 52.4 7.0 102 16-117 74-178 (189)
81 KOG1029 Endocytic adaptor prot 98.3 1.6E-05 3.5E-10 62.3 10.7 141 6-151 9-256 (1118)
82 PF14788 EF-hand_10: EF hand; 98.2 8.1E-06 1.7E-10 42.1 5.9 48 105-152 2-49 (51)
83 PF14788 EF-hand_10: EF hand; 98.2 6.1E-06 1.3E-10 42.5 5.5 48 29-76 1-48 (51)
84 PF13202 EF-hand_5: EF hand; P 98.2 2.5E-06 5.5E-11 37.7 3.2 23 91-113 2-24 (25)
85 KOG4251 Calcium binding protei 98.1 1.8E-05 3.9E-10 54.2 7.7 68 48-115 100-167 (362)
86 KOG0377 Protein serine/threoni 98.1 1.6E-05 3.6E-10 58.7 7.3 69 48-116 546-615 (631)
87 PF10591 SPARC_Ca_bdg: Secrete 98.1 4.9E-06 1.1E-10 51.1 3.6 61 87-149 53-113 (113)
88 KOG4666 Predicted phosphate ac 98.1 1.1E-05 2.3E-10 57.4 5.5 103 49-154 259-361 (412)
89 PF09279 EF-hand_like: Phospho 98.1 3.3E-05 7.2E-10 44.7 6.7 69 89-158 1-75 (83)
90 PF13202 EF-hand_5: EF hand; P 98.0 1.1E-05 2.3E-10 35.6 3.5 25 126-150 1-25 (25)
91 KOG0046 Ca2+-binding actin-bun 98.0 3.5E-05 7.6E-10 58.0 7.8 74 4-78 10-86 (627)
92 KOG1707 Predicted Ras related/ 98.0 0.00017 3.7E-09 55.3 10.7 141 5-151 187-376 (625)
93 KOG0040 Ca2+-binding actin-bun 98.0 2.8E-05 6E-10 65.0 6.9 68 88-155 2253-2327(2399)
94 PRK12309 transaldolase/EF-hand 97.9 9.8E-05 2.1E-09 54.9 8.0 59 42-116 327-385 (391)
95 PF10591 SPARC_Ca_bdg: Secrete 97.9 6.7E-06 1.4E-10 50.5 1.4 61 46-111 51-111 (113)
96 KOG2562 Protein phosphatase 2 97.8 0.00029 6.4E-09 52.5 9.2 132 14-151 226-378 (493)
97 KOG0046 Ca2+-binding actin-bun 97.6 0.00032 7E-09 53.1 7.6 64 88-152 19-85 (627)
98 PF05042 Caleosin: Caleosin re 97.6 0.0008 1.7E-08 43.9 7.9 136 12-150 6-164 (174)
99 KOG4065 Uncharacterized conser 97.6 0.00028 6E-09 42.7 5.2 60 90-149 69-142 (144)
100 KOG1955 Ral-GTPase effector RA 97.3 0.00083 1.8E-08 50.7 6.4 71 6-78 224-294 (737)
101 smart00054 EFh EF-hand, calciu 97.3 0.00038 8.2E-09 30.8 3.1 25 91-115 3-27 (29)
102 smart00054 EFh EF-hand, calciu 97.2 0.00071 1.5E-08 29.9 3.1 27 15-41 2-28 (29)
103 KOG4666 Predicted phosphate ac 97.1 0.0017 3.7E-08 46.5 5.8 101 13-117 259-360 (412)
104 KOG0035 Ca2+-binding actin-bun 96.9 0.023 5E-07 46.3 10.8 104 6-112 740-848 (890)
105 KOG4065 Uncharacterized conser 96.7 0.016 3.4E-07 35.3 6.9 69 4-74 60-142 (144)
106 PF09279 EF-hand_like: Phospho 96.7 0.0082 1.8E-07 34.6 5.5 61 15-76 2-68 (83)
107 KOG1265 Phospholipase C [Lipid 96.7 0.069 1.5E-06 43.6 12.0 123 23-154 158-301 (1189)
108 KOG0998 Synaptic vesicle prote 96.6 0.0051 1.1E-07 50.4 5.8 145 4-153 120-346 (847)
109 PLN02952 phosphoinositide phos 96.2 0.057 1.2E-06 42.6 9.1 90 62-153 13-111 (599)
110 PF05517 p25-alpha: p25-alpha 96.2 0.063 1.4E-06 34.9 7.9 63 91-153 5-70 (154)
111 PF09069 EF-hand_3: EF-hand; 96.2 0.077 1.7E-06 31.1 7.4 69 88-159 3-82 (90)
112 KOG2243 Ca2+ release channel ( 96.2 0.011 2.4E-07 50.3 5.1 63 92-155 4061-4123(5019)
113 KOG3555 Ca2+-binding proteogly 96.1 0.014 3E-07 42.3 4.9 63 87-153 249-311 (434)
114 PF05517 p25-alpha: p25-alpha 96.0 0.13 2.9E-06 33.4 8.9 63 16-78 2-70 (154)
115 KOG1955 Ral-GTPase effector RA 96.0 0.026 5.6E-07 43.0 5.9 63 88-152 231-293 (737)
116 PF08726 EFhand_Ca_insen: Ca2+ 95.9 0.0053 1.1E-07 34.1 1.6 54 88-149 6-66 (69)
117 PF05042 Caleosin: Caleosin re 95.8 0.084 1.8E-06 34.7 7.0 40 121-160 93-134 (174)
118 KOG0042 Glycerol-3-phosphate d 95.7 0.042 9E-07 42.7 6.0 76 6-81 586-661 (680)
119 KOG1029 Endocytic adaptor prot 95.4 0.035 7.6E-07 44.5 4.9 68 7-76 189-256 (1118)
120 KOG0169 Phosphoinositide-speci 95.0 0.43 9.4E-06 38.4 9.7 96 51-153 138-233 (746)
121 KOG4347 GTPase-activating prot 94.9 0.058 1.2E-06 42.4 4.8 56 51-110 557-612 (671)
122 KOG4347 GTPase-activating prot 94.8 0.085 1.8E-06 41.5 5.4 77 66-145 535-611 (671)
123 KOG4578 Uncharacterized conser 94.6 0.031 6.7E-07 40.4 2.5 59 18-76 338-397 (421)
124 KOG0042 Glycerol-3-phosphate d 94.4 0.14 3.1E-06 39.8 5.8 65 89-153 594-658 (680)
125 KOG3555 Ca2+-binding proteogly 94.1 0.14 3E-06 37.4 4.9 98 14-118 212-312 (434)
126 KOG2243 Ca2+ release channel ( 93.3 0.2 4.3E-06 43.3 5.1 59 18-77 4062-4120(5019)
127 KOG1264 Phospholipase C [Lipid 93.3 0.62 1.3E-05 38.2 7.6 148 7-155 137-296 (1267)
128 KOG4578 Uncharacterized conser 93.2 0.12 2.5E-06 37.5 3.3 63 89-153 334-399 (421)
129 KOG0998 Synaptic vesicle prote 93.0 0.18 3.9E-06 41.7 4.5 138 10-152 8-190 (847)
130 PF08976 DUF1880: Domain of un 92.8 0.12 2.7E-06 31.5 2.6 33 120-152 3-35 (118)
131 KOG3866 DNA-binding protein of 92.0 0.25 5.4E-06 35.6 3.7 62 91-152 247-324 (442)
132 KOG1707 Predicted Ras related/ 91.6 0.65 1.4E-05 36.5 5.7 67 6-78 308-378 (625)
133 PLN02952 phosphoinositide phos 91.4 2.4 5.2E-05 33.9 8.7 88 26-115 13-109 (599)
134 PLN02228 Phosphoinositide phos 91.2 1.7 3.6E-05 34.5 7.7 64 88-153 24-93 (567)
135 PLN02222 phosphoinositide phos 91.2 1.5 3.3E-05 34.8 7.4 65 88-154 25-92 (581)
136 KOG3866 DNA-binding protein of 90.2 1.5 3.3E-05 31.8 6.1 85 31-116 225-324 (442)
137 KOG0035 Ca2+-binding actin-bun 90.0 1.2 2.7E-05 36.8 6.2 66 88-153 747-817 (890)
138 cd07313 terB_like_2 tellurium 89.9 2.8 6.1E-05 25.0 6.6 82 26-111 12-95 (104)
139 PF08976 DUF1880: Domain of un 89.4 0.55 1.2E-05 28.8 3.0 32 46-77 4-35 (118)
140 PF12174 RST: RCD1-SRO-TAF4 (R 88.4 0.42 9.1E-06 26.7 1.9 37 119-155 20-56 (70)
141 PLN02230 phosphoinositide phos 88.3 3.5 7.6E-05 33.0 7.5 66 87-153 28-103 (598)
142 PRK09430 djlA Dna-J like membr 87.3 8.8 0.00019 27.5 10.2 98 26-132 68-174 (267)
143 KOG2871 Uncharacterized conser 87.0 0.67 1.5E-05 34.3 2.7 65 87-151 308-373 (449)
144 PF11116 DUF2624: Protein of u 86.9 4.3 9.4E-05 23.5 7.8 48 28-75 13-60 (85)
145 KOG2871 Uncharacterized conser 85.8 0.83 1.8E-05 33.9 2.7 66 12-77 308-374 (449)
146 PF03672 UPF0154: Uncharacteri 85.6 2.9 6.3E-05 22.8 4.1 33 26-58 28-60 (64)
147 PF07308 DUF1456: Protein of u 84.8 4.9 0.00011 22.2 5.0 46 105-150 14-59 (68)
148 PF14513 DAG_kinase_N: Diacylg 84.6 2.2 4.8E-05 27.2 3.9 70 28-101 6-82 (138)
149 COG3763 Uncharacterized protei 83.2 4.2 9.1E-05 22.5 4.1 34 26-59 35-68 (71)
150 PF08414 NADPH_Ox: Respiratory 83.1 4.9 0.00011 24.0 4.6 63 88-155 30-95 (100)
151 COG5069 SAC6 Ca2+-binding acti 82.9 3.7 8E-05 31.8 5.0 87 7-99 479-565 (612)
152 PRK00523 hypothetical protein; 81.7 4.8 0.0001 22.5 4.0 33 26-58 36-68 (72)
153 PF14513 DAG_kinase_N: Diacylg 81.5 11 0.00025 24.0 6.5 66 64-134 6-79 (138)
154 KOG3449 60S acidic ribosomal p 81.2 9.9 0.00022 23.1 6.4 43 91-133 4-46 (112)
155 PLN02223 phosphoinositide phos 79.1 14 0.00029 29.4 7.1 65 88-153 16-93 (537)
156 PF09069 EF-hand_3: EF-hand; 78.9 11 0.00023 22.2 7.3 61 13-76 3-74 (90)
157 PF02761 Cbl_N2: CBL proto-onc 78.5 11 0.00023 21.9 6.0 69 46-118 4-72 (85)
158 KOG2301 Voltage-gated Ca2+ cha 78.3 6.2 0.00013 35.4 5.5 72 6-78 1410-1485(1592)
159 PF11116 DUF2624: Protein of u 78.3 11 0.00024 21.9 6.1 43 103-145 13-55 (85)
160 PF01023 S_100: S-100/ICaBP ty 77.7 7.2 0.00016 19.5 3.9 32 10-41 3-36 (44)
161 PRK01844 hypothetical protein; 77.3 8.1 0.00018 21.6 4.0 33 26-58 35-67 (72)
162 PF08726 EFhand_Ca_insen: Ca2+ 77.1 3.8 8.3E-05 22.8 2.8 54 13-74 6-66 (69)
163 TIGR01848 PHA_reg_PhaR polyhyd 77.1 12 0.00025 22.8 4.9 18 58-75 12-29 (107)
164 cd07313 terB_like_2 tellurium 75.6 6.1 0.00013 23.5 3.7 53 63-116 13-65 (104)
165 KOG0039 Ferric reductase, NADH 74.9 5.6 0.00012 32.3 4.2 66 88-154 18-91 (646)
166 TIGR01639 P_fal_TIGR01639 Plas 74.6 9.6 0.00021 20.5 3.9 32 27-58 7-38 (61)
167 KOG1265 Phospholipase C [Lipid 73.1 50 0.0011 28.2 8.9 86 28-116 198-299 (1189)
168 PF05099 TerB: Tellurite resis 72.8 16 0.00035 22.9 5.3 80 26-109 36-117 (140)
169 PTZ00373 60S Acidic ribosomal 72.4 20 0.00043 22.1 5.2 53 91-148 6-58 (112)
170 PF08414 NADPH_Ox: Respiratory 72.0 19 0.0004 21.6 7.3 61 48-116 29-92 (100)
171 TIGR01639 P_fal_TIGR01639 Plas 72.0 13 0.00027 20.1 4.0 32 103-134 8-39 (61)
172 KOG3449 60S acidic ribosomal p 70.9 21 0.00046 21.8 6.3 54 15-73 3-56 (112)
173 PF07879 PHB_acc_N: PHB/PHA ac 70.8 11 0.00024 20.5 3.5 37 95-131 10-56 (64)
174 PF00404 Dockerin_1: Dockerin 70.2 7.3 0.00016 16.1 2.4 14 98-111 1-14 (21)
175 PLN02228 Phosphoinositide phos 68.7 26 0.00055 28.2 6.4 27 47-75 22-48 (567)
176 PF03979 Sigma70_r1_1: Sigma-7 67.9 7.7 0.00017 22.2 2.7 43 88-134 7-49 (82)
177 PLN02230 phosphoinositide phos 66.0 27 0.00057 28.3 6.1 28 48-76 28-55 (598)
178 cd05833 Ribosomal_P2 Ribosomal 66.0 28 0.00061 21.3 5.3 55 92-151 5-59 (109)
179 PF07308 DUF1456: Protein of u 64.5 22 0.00048 19.6 5.3 46 30-75 14-59 (68)
180 PLN02222 phosphoinositide phos 64.2 45 0.00098 26.9 7.0 62 14-77 26-90 (581)
181 cd07176 terB tellurite resista 63.1 29 0.00064 20.6 4.9 79 26-109 15-98 (111)
182 PF09336 Vps4_C: Vps4 C termin 62.8 14 0.00031 20.0 3.0 25 104-128 29-53 (62)
183 PF09068 EF-hand_2: EF hand; 62.1 37 0.0008 21.3 8.3 28 89-116 98-125 (127)
184 PF08461 HTH_12: Ribonuclease 60.2 20 0.00043 19.6 3.3 37 101-137 10-46 (66)
185 KOG4403 Cell surface glycoprot 59.4 32 0.0007 26.5 5.2 56 61-116 40-96 (575)
186 PF13623 SurA_N_2: SurA N-term 59.4 45 0.00098 21.5 7.1 40 110-149 95-144 (145)
187 cd07316 terB_like_DjlA N-termi 58.6 36 0.00078 20.1 8.1 80 26-109 12-94 (106)
188 TIGR03573 WbuX N-acetyl sugar 57.9 30 0.00066 25.7 5.0 43 102-150 300-342 (343)
189 KOG4004 Matricellular protein 57.8 4.4 9.5E-05 27.6 0.5 105 4-115 141-249 (259)
190 KOG0506 Glutaminase (contains 56.7 77 0.0017 25.0 6.8 60 18-77 91-158 (622)
191 PF04558 tRNA_synt_1c_R1: Glut 55.5 17 0.00037 24.0 3.0 49 84-133 81-129 (164)
192 PF08356 EF_assoc_2: EF hand a 53.9 44 0.00095 19.6 5.9 59 5-63 2-62 (89)
193 PLN00138 large subunit ribosom 53.4 51 0.0011 20.3 5.2 50 94-148 7-56 (113)
194 TIGR00624 tag DNA-3-methyladen 52.5 26 0.00057 23.5 3.5 107 10-119 50-168 (179)
195 PF01885 PTS_2-RNA: RNA 2'-pho 52.2 33 0.00071 23.2 4.0 37 23-59 26-62 (186)
196 PF01885 PTS_2-RNA: RNA 2'-pho 51.9 35 0.00077 23.0 4.1 36 98-133 26-61 (186)
197 KOG1954 Endocytosis/signaling 51.7 25 0.00055 26.8 3.6 55 90-147 446-500 (532)
198 PF12419 DUF3670: SNF2 Helicas 51.6 50 0.0011 21.1 4.6 50 100-149 79-138 (141)
199 KOG4422 Uncharacterized conser 51.4 1.2E+02 0.0026 23.9 7.3 52 99-152 234-285 (625)
200 PF11829 DUF3349: Protein of u 51.3 51 0.0011 19.7 4.4 31 30-60 20-50 (96)
201 PF01325 Fe_dep_repress: Iron 49.8 40 0.00086 18.0 3.6 54 7-69 2-55 (60)
202 PF08044 DUF1707: Domain of un 48.0 28 0.00061 18.1 2.5 31 101-131 20-50 (53)
203 KOG4004 Matricellular protein 47.8 9.1 0.0002 26.1 0.8 59 93-153 192-251 (259)
204 PF12174 RST: RCD1-SRO-TAF4 (R 47.6 49 0.0011 18.4 5.8 51 27-80 6-56 (70)
205 PRK00819 RNA 2'-phosphotransfe 47.5 51 0.0011 22.2 4.3 31 100-130 29-59 (179)
206 KOG4070 Putative signal transd 47.2 24 0.00053 22.9 2.6 46 105-150 34-83 (180)
207 KOG1954 Endocytosis/signaling 47.1 60 0.0013 24.9 4.9 58 14-74 445-502 (532)
208 KOG4286 Dystrophin-like protei 46.9 1.7E+02 0.0036 24.8 7.5 100 50-155 471-583 (966)
209 PRK09430 djlA Dna-J like membr 45.8 69 0.0015 23.0 5.0 51 101-152 68-120 (267)
210 PF08672 APC2: Anaphase promot 45.5 32 0.00069 18.5 2.6 35 5-41 10-44 (60)
211 PF10437 Lip_prot_lig_C: Bacte 44.9 59 0.0013 18.5 4.1 43 106-150 43-86 (86)
212 PF12631 GTPase_Cys_C: Catalyt 44.9 46 0.00099 18.5 3.3 46 88-133 23-72 (73)
213 KOG4301 Beta-dystrobrevin [Cyt 44.6 44 0.00095 25.0 3.8 61 93-154 115-178 (434)
214 PF13608 Potyvirid-P3: Protein 44.5 49 0.0011 25.8 4.3 31 11-42 287-317 (445)
215 PLN02223 phosphoinositide phos 44.1 1.5E+02 0.0032 23.9 6.8 65 12-77 15-92 (537)
216 PF01316 Arg_repressor: Argini 43.6 58 0.0013 18.1 4.0 32 103-134 18-49 (70)
217 PF07572 BCNT: Bucentaur or cr 43.5 24 0.00052 20.3 2.0 27 89-115 40-66 (81)
218 KOG3077 Uncharacterized conser 43.2 1.2E+02 0.0027 21.7 7.1 63 89-153 65-130 (260)
219 PF11848 DUF3368: Domain of un 42.6 47 0.001 16.7 3.8 33 101-133 14-47 (48)
220 PF03250 Tropomodulin: Tropomo 42.5 27 0.00058 22.5 2.3 25 3-27 20-44 (147)
221 PHA02105 hypothetical protein 42.0 56 0.0012 17.4 3.4 46 30-75 5-55 (68)
222 COG1460 Uncharacterized protei 41.3 68 0.0015 19.8 3.8 29 105-133 80-108 (114)
223 KOG0506 Glutaminase (contains 41.1 1.1E+02 0.0023 24.3 5.5 63 91-153 89-159 (622)
224 cd08324 CARD_NOD1_CARD4 Caspas 40.5 75 0.0016 18.5 4.2 54 101-159 26-79 (85)
225 TIGR01209 RNA ligase, Pab1020 40.4 1.4E+02 0.0031 22.7 6.0 45 19-63 163-218 (374)
226 PF02885 Glycos_trans_3N: Glyc 40.4 62 0.0013 17.5 4.0 12 105-116 15-26 (66)
227 PRK00819 RNA 2'-phosphotransfe 39.6 81 0.0018 21.2 4.3 43 24-69 28-70 (179)
228 PF11020 DUF2610: Domain of un 38.8 47 0.001 19.0 2.6 37 117-153 42-78 (82)
229 COG1423 ATP-dependent DNA liga 38.6 97 0.0021 23.4 4.8 48 19-66 171-229 (382)
230 COG2818 Tag 3-methyladenine DN 38.6 34 0.00073 23.1 2.4 46 10-55 52-97 (188)
231 PF13551 HTH_29: Winged helix- 38.2 85 0.0018 18.5 6.3 51 7-57 58-110 (112)
232 cd07894 Adenylation_RNA_ligase 38.2 1E+02 0.0022 23.2 5.0 38 24-61 136-183 (342)
233 PF07199 DUF1411: Protein of u 38.0 1.3E+02 0.0028 20.5 6.9 66 11-76 120-185 (194)
234 COG4103 Uncharacterized protei 37.8 1.1E+02 0.0024 19.7 7.8 93 17-115 34-128 (148)
235 PF15144 DUF4576: Domain of un 37.6 20 0.00043 20.4 1.0 41 27-68 38-78 (88)
236 PRK14981 DNA-directed RNA poly 37.3 87 0.0019 19.2 3.9 26 107-132 81-106 (112)
237 KOG2301 Voltage-gated Ca2+ cha 37.3 40 0.00087 30.7 3.2 66 88-154 1417-1486(1592)
238 cd04411 Ribosomal_P1_P2_L12p R 36.9 99 0.0021 18.8 5.9 43 105-152 17-59 (105)
239 TIGR00135 gatC glutamyl-tRNA(G 36.7 89 0.0019 18.2 3.9 29 105-133 1-29 (93)
240 cd00086 homeodomain Homeodomai 36.3 64 0.0014 16.4 4.7 44 5-55 5-48 (59)
241 PF04963 Sigma54_CBD: Sigma-54 36.1 66 0.0014 21.8 3.6 47 25-74 46-95 (194)
242 PF07862 Nif11: Nitrogen fixat 36.1 62 0.0013 16.2 2.8 21 106-126 28-48 (49)
243 PF07128 DUF1380: Protein of u 36.1 78 0.0017 20.3 3.6 31 105-135 27-57 (139)
244 COG4359 Uncharacterized conser 36.1 1.4E+02 0.0031 20.4 7.3 84 61-158 9-93 (220)
245 KOG4629 Predicted mechanosensi 35.1 1.3E+02 0.0028 25.1 5.5 58 88-152 404-461 (714)
246 PF06384 ICAT: Beta-catenin-in 34.9 63 0.0014 18.5 2.7 23 109-131 21-43 (78)
247 PF09888 DUF2115: Uncharacteri 34.6 1.4E+02 0.003 19.8 6.2 86 30-117 1-86 (163)
248 PF09312 SurA_N: SurA N-termin 34.4 64 0.0014 19.8 3.1 12 141-152 99-110 (118)
249 PF06627 DUF1153: Protein of u 34.1 89 0.0019 18.4 3.3 33 102-139 47-79 (90)
250 PRK00441 argR arginine repress 34.0 1.2E+02 0.0026 19.7 4.3 40 101-140 15-58 (149)
251 cd08316 Death_FAS_TNFRSF6 Deat 33.9 1.1E+02 0.0023 18.3 7.5 25 107-131 69-93 (97)
252 PF07499 RuvA_C: RuvA, C-termi 33.8 68 0.0015 16.0 4.5 40 107-150 3-42 (47)
253 COG2818 Tag 3-methyladenine DN 33.7 48 0.001 22.4 2.5 42 88-129 55-96 (188)
254 PRK06402 rpl12p 50S ribosomal 33.7 1.1E+02 0.0025 18.6 5.4 41 104-149 16-56 (106)
255 PF05872 DUF853: Bacterial pro 33.5 2.5E+02 0.0053 22.4 6.8 111 29-153 105-228 (502)
256 KOG4286 Dystrophin-like protei 33.4 1.2E+02 0.0027 25.5 5.0 104 46-150 417-531 (966)
257 PF09373 PMBR: Pseudomurein-bi 33.1 55 0.0012 15.0 2.0 16 138-153 2-17 (33)
258 PTZ00373 60S Acidic ribosomal 31.8 1.3E+02 0.0028 18.6 5.3 42 17-58 7-48 (112)
259 KOG3077 Uncharacterized conser 31.7 2E+02 0.0043 20.7 11.6 66 11-76 62-128 (260)
260 TIGR03798 ocin_TIGR03798 bacte 31.6 90 0.0019 16.8 3.3 25 105-129 25-49 (64)
261 PLN02508 magnesium-protoporphy 31.4 2E+02 0.0043 21.6 5.4 85 23-120 53-140 (357)
262 PF11422 IBP39: Initiator bind 30.8 1.7E+02 0.0037 19.7 6.7 56 65-120 36-91 (181)
263 TIGR02675 tape_meas_nterm tape 30.4 94 0.002 17.4 3.0 16 101-116 27-42 (75)
264 cd03035 ArsC_Yffb Arsenate Red 29.8 58 0.0013 19.6 2.3 49 103-154 34-85 (105)
265 PF08100 Dimerisation: Dimeris 29.5 31 0.00068 17.8 0.9 38 93-131 11-48 (51)
266 PF06648 DUF1160: Protein of u 29.3 1.5E+02 0.0033 18.6 4.3 14 45-58 50-63 (122)
267 TIGR01848 PHA_reg_PhaR polyhyd 28.9 1.4E+02 0.0031 18.2 6.5 21 20-40 10-30 (107)
268 COG5562 Phage envelope protein 28.9 58 0.0013 20.8 2.2 50 101-154 53-102 (137)
269 PF00046 Homeobox: Homeobox do 28.8 90 0.002 15.9 4.7 29 102-132 22-50 (57)
270 PF13075 DUF3939: Protein of u 28.3 30 0.00065 22.1 0.8 16 137-152 38-53 (140)
271 PRK00034 gatC aspartyl/glutamy 28.1 1.3E+02 0.0028 17.5 3.9 29 105-133 3-31 (95)
272 COG2058 RPP1A Ribosomal protei 27.8 1.5E+02 0.0033 18.1 4.9 44 104-152 16-59 (109)
273 KOG0113 U1 small nuclear ribon 27.7 1.5E+02 0.0032 21.9 4.2 47 88-134 79-126 (335)
274 PRK04280 arginine repressor; P 27.6 1.2E+02 0.0027 19.6 3.6 38 103-140 17-58 (148)
275 PRK09462 fur ferric uptake reg 27.5 1.7E+02 0.0037 18.7 4.9 34 26-59 30-63 (148)
276 PF14842 FliG_N: FliG N-termin 27.2 1.1E+02 0.0024 18.4 3.2 15 4-18 27-41 (108)
277 PF07492 Trehalase_Ca-bi: Neut 27.2 18 0.00038 16.5 -0.2 17 128-144 3-19 (30)
278 PF15244 HSD3: Hydroxy-steroid 27.1 1.2E+02 0.0025 23.5 3.8 30 88-117 382-411 (419)
279 PF08355 EF_assoc_1: EF hand a 27.1 61 0.0013 18.4 1.9 18 134-151 12-29 (76)
280 PF12486 DUF3702: ImpA domain 27.0 1.1E+02 0.0024 19.9 3.3 29 11-39 67-95 (148)
281 PF02758 PYRIN: PAAD/DAPIN/Pyr 26.9 54 0.0012 18.7 1.7 35 3-37 8-42 (83)
282 COG1321 TroR Mn-dependent tran 26.8 1.9E+02 0.0041 18.9 8.1 114 6-134 3-121 (154)
283 PF14713 DUF4464: Domain of un 25.8 1.5E+02 0.0033 20.9 4.0 52 64-116 8-60 (233)
284 KOG4776 Uncharacterized conser 25.3 96 0.0021 21.7 2.8 27 88-114 188-214 (235)
285 PF13331 DUF4093: Domain of un 25.0 1.3E+02 0.0029 17.5 3.1 57 65-130 30-86 (87)
286 PF14473 RD3: RD3 protein 24.7 2E+02 0.0043 18.4 4.4 50 6-58 71-120 (133)
287 PRK06253 O-phosphoseryl-tRNA s 24.4 3.8E+02 0.0083 21.6 7.2 70 4-76 80-153 (529)
288 PF14848 HU-DNA_bdg: DNA-bindi 24.4 1.9E+02 0.004 18.0 4.2 32 102-133 26-57 (124)
289 PRK03968 DNA primase large sub 24.0 3.2E+02 0.007 21.0 5.5 48 24-77 116-163 (399)
290 TIGR02878 spore_ypjB sporulati 23.9 2.7E+02 0.0059 19.7 5.1 54 3-61 141-194 (233)
291 PF09107 SelB-wing_3: Elongati 23.7 1.2E+02 0.0026 15.6 3.8 32 101-137 7-38 (50)
292 KOG1785 Tyrosine kinase negati 23.5 3.6E+02 0.0077 21.0 8.6 82 27-117 188-275 (563)
293 PRK05066 arginine repressor; P 23.4 1.9E+02 0.0042 18.9 3.9 39 102-140 21-64 (156)
294 KOG4301 Beta-dystrobrevin [Cyt 23.4 3.4E+02 0.0073 20.6 9.4 96 52-156 113-219 (434)
295 COG0721 GatC Asp-tRNAAsn/Glu-t 23.3 1.7E+02 0.0038 17.3 3.9 30 104-133 2-31 (96)
296 COG4807 Uncharacterized protei 23.2 2.1E+02 0.0046 18.2 6.1 27 108-134 102-128 (155)
297 cd05831 Ribosomal_P1 Ribosomal 23.2 1.8E+02 0.004 17.5 4.3 45 101-150 14-58 (103)
298 PF09862 DUF2089: Protein of u 23.1 2E+02 0.0042 17.8 4.3 24 124-150 89-112 (113)
299 TIGR01529 argR_whole arginine 23.0 2.2E+02 0.0047 18.4 4.1 35 100-134 12-46 (146)
300 PF08730 Rad33: Rad33; InterP 23.0 2.4E+02 0.0052 18.8 10.3 42 4-46 5-46 (170)
301 PF09494 Slx4: Slx4 endonuclea 22.9 1.4E+02 0.003 16.1 3.6 15 105-119 25-39 (64)
302 TIGR00470 sepS O-phosphoseryl- 22.9 4.1E+02 0.0088 21.4 7.0 70 4-77 80-153 (533)
303 cd08315 Death_TRAILR_DR4_DR5 D 22.8 1.8E+02 0.0039 17.2 7.2 75 29-130 16-90 (96)
304 PRK10353 3-methyl-adenine DNA 22.8 67 0.0014 21.8 1.8 46 10-55 51-96 (187)
305 PHA02335 hypothetical protein 22.7 1.9E+02 0.0042 17.6 4.8 30 63-101 22-51 (118)
306 KOG1931 Putative transmembrane 22.3 30 0.00065 29.8 0.1 42 37-78 138-181 (1156)
307 PF13624 SurA_N_3: SurA N-term 22.1 2E+02 0.0044 18.2 3.9 49 105-153 84-133 (154)
308 PF09454 Vps23_core: Vps23 cor 22.0 41 0.00089 18.4 0.6 21 138-158 37-57 (65)
309 PF05383 La: La domain; Inter 21.7 88 0.0019 16.8 1.8 18 20-37 22-39 (61)
310 COG1059 Thermostable 8-oxoguan 21.7 2.8E+02 0.0061 19.1 4.8 28 93-121 60-87 (210)
311 cd08313 Death_TNFR1 Death doma 21.6 1.7E+02 0.0038 16.7 3.2 14 140-153 57-70 (80)
312 PF12987 DUF3871: Domain of un 21.6 3.4E+02 0.0075 20.1 6.0 28 14-41 193-229 (323)
313 PRK09389 (R)-citramalate synth 21.2 3E+02 0.0064 21.9 5.2 46 108-153 321-368 (488)
314 PF02337 Gag_p10: Retroviral G 21.1 1.9E+02 0.0042 17.0 4.3 24 110-133 14-37 (90)
315 TIGR02613 mob_myst_B mobile my 21.0 2.6E+02 0.0057 18.7 4.4 22 99-120 126-147 (186)
316 PF13829 DUF4191: Domain of un 20.9 2.8E+02 0.006 19.5 4.4 35 99-133 162-196 (224)
317 PF08671 SinI: Anti-repressor 20.9 97 0.0021 14.1 1.6 11 105-115 17-27 (30)
318 TIGR02679 conserved hypothetic 20.7 3.8E+02 0.0081 20.6 5.5 47 4-50 9-56 (385)
319 KOG0129 Predicted RNA-binding 20.6 46 0.001 26.2 0.8 24 137-160 414-437 (520)
320 smart00513 SAP Putative DNA-bi 20.5 1.1E+02 0.0024 14.0 2.5 18 104-121 3-20 (35)
321 PF08349 DUF1722: Protein of u 20.4 2.2E+02 0.0048 17.4 5.2 43 110-152 55-97 (117)
322 PRK14074 rpsF 30S ribosomal pr 20.3 3.3E+02 0.0072 19.4 5.4 69 6-77 13-81 (257)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.98 E-value=1.8e-30 Score=165.54 Aligned_cols=148 Identities=32% Similarity=0.641 Sum_probs=138.3
Q ss_pred cccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHh
Q 031260 4 METVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQV 83 (163)
Q Consensus 4 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~ 83 (163)
-.+++++++++|+++|..+|++++|.|+..+|..+++.+|..++..++..++..++. +.+.|+|.+|+.++........
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~ 89 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGD 89 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCC
Confidence 357999999999999999999999999999999999999999999999999999998 8899999999999987775433
Q ss_pred hhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhcc
Q 031260 84 LINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKSA 154 (163)
Q Consensus 84 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 154 (163)
..++++.+|+.||++++|+|+..+++.++..+|..+++++++.++..++.+++|.|+|++|++.+...+
T Consensus 90 --~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 90 --KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred --cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 338999999999999999999999999999999999999999999999999999999999999887654
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.96 E-value=8.6e-28 Score=155.70 Aligned_cols=147 Identities=39% Similarity=0.691 Sum_probs=136.3
Q ss_pred ccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhh-
Q 031260 7 VQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLI- 85 (163)
Q Consensus 7 l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~- 85 (163)
+++.++..++.+|..+|.+++|.|+..++..+++.+|..++..++..++..++.+++|.|++.+|+.++..........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 5778899999999999999999999999999999999999999999999999999999999999999998766543332
Q ss_pred -cHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 86 -NQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 86 -~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
....++.+|+.||++++|+||.++|+.+|..+|..++.++++.+++..|.|++|.|+|++|++.+...
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 24699999999999999999999999999999999999999999999999999999999999998653
No 3
>PTZ00183 centrin; Provisional
Probab=99.94 E-value=5.4e-25 Score=143.74 Aligned_cols=148 Identities=34% Similarity=0.639 Sum_probs=134.5
Q ss_pred ccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhh
Q 031260 5 ETVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVL 84 (163)
Q Consensus 5 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~ 84 (163)
.++++.++..+..+|..+|++++|.|+..+|..++..+|..++...+..++..++.+++|.|+|.+|+.++.......
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~-- 86 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGER-- 86 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCC--
Confidence 468899999999999999999999999999999999999889999999999999999999999999999876543221
Q ss_pred hcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhcc
Q 031260 85 INQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKSA 154 (163)
Q Consensus 85 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 154 (163)
.....+..+|+.+|++++|.|+.++|..++..+|..++..++..++..++.+++|.|++++|..++...+
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccc
Confidence 2236789999999999999999999999999999999999999999999999999999999999997753
No 4
>PTZ00184 calmodulin; Provisional
Probab=99.94 E-value=1e-24 Score=140.99 Aligned_cols=146 Identities=40% Similarity=0.752 Sum_probs=132.4
Q ss_pred ccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhh
Q 031260 5 ETVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVL 84 (163)
Q Consensus 5 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~ 84 (163)
.+++++++..+...|..+|.+++|.|+..+|..++..++..++.+.+..++..++.+++|.|+|++|+..+........
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~- 81 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD- 81 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc-
Confidence 4678899999999999999999999999999999999999899999999999999999999999999998875433221
Q ss_pred hcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 85 INQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 85 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
....+..+|+.+|.+++|.|+.++|..++...|..++.+++..++..+|.+++|.|+|++|+.++..
T Consensus 82 -~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 82 -SEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred -HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 2267889999999999999999999999999999999999999999999999999999999998754
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.4e-23 Score=131.43 Aligned_cols=146 Identities=35% Similarity=0.600 Sum_probs=137.2
Q ss_pred ccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhh
Q 031260 5 ETVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVL 84 (163)
Q Consensus 5 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~ 84 (163)
..+++++.+.++..|..+|++++|.|..++|.-+++.+|..+..+++..+...+++++.|.|+|++|...+......+.
T Consensus 25 ~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d- 103 (172)
T KOG0028|consen 25 SELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD- 103 (172)
T ss_pred ccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC-
Confidence 3577888899999999999999999999999999999999999999999999999999999999999999877766654
Q ss_pred hcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 85 INQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 85 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
+.++++.+|+.+|.+++|.|+..+|+.+...+|..++.+++.++++.++.+++|.|+-++|..++++
T Consensus 104 -t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 104 -TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred -cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 4589999999999999999999999999999999999999999999999999999999999999875
No 6
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.91 E-value=2.1e-23 Score=127.72 Aligned_cols=147 Identities=26% Similarity=0.489 Sum_probs=134.9
Q ss_pred cccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC--CCCceeHhHHHHHHchhhhh
Q 031260 4 METVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSN--GNGLVEFDELVALILPDISE 81 (163)
Q Consensus 4 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~ef~~~~~~~~~~ 81 (163)
|-.++++....++++|..+|..++|.|+..+...+++.+|.+|+..++.+....+.++ +-..++|++|+..+......
T Consensus 2 ~~~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 2 MIAFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred CcccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 4456788889999999999999999999999999999999999999999999988776 44789999999999888887
Q ss_pred HhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHh
Q 031260 82 QVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMA 151 (163)
Q Consensus 82 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 151 (163)
......+.+...++.||++++|.|...+++.+|.++|..+++++++.++.-. .|++|.|+|+.|++-+.
T Consensus 82 k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 82 KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 7777789999999999999999999999999999999999999999999887 57889999999998774
No 7
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.91 E-value=9.3e-23 Score=126.91 Aligned_cols=143 Identities=23% Similarity=0.469 Sum_probs=132.9
Q ss_pred cccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHh
Q 031260 4 METVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQV 83 (163)
Q Consensus 4 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~ 83 (163)
.+.+...+|++++++|..+|.|++|.|..++++..+.++|-.++++++..++... .|.|+|--|+.+++..+....
T Consensus 23 Famf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtd 98 (171)
T KOG0031|consen 23 FAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTD 98 (171)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCC
Confidence 4568899999999999999999999999999999999999999999999999654 688999999999998877655
Q ss_pred hhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 84 LINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 84 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
+. +.|..+|+.||++++|.|..+.++++|...|..+++++|+.+++.+-.+..|.++|..|+..+..
T Consensus 99 pe--~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 99 PE--EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HH--HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 43 88999999999999999999999999999999999999999999999999999999999999873
No 8
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.85 E-value=7.7e-20 Score=120.64 Aligned_cols=144 Identities=31% Similarity=0.522 Sum_probs=118.9
Q ss_pred ccccHHHHHHHHHHHHhhCCC-CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCc-eeHhHHHHHHchhhhhH
Q 031260 5 ETVQSEQLKQLKDIFMRFDMD-SDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGL-VEFDELVALILPDISEQ 82 (163)
Q Consensus 5 ~~l~~~~~~~l~~~f~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~ef~~~~~~~~~~~ 82 (163)
+.++.+++..+...|.++|++ ++|.|+.+||..+.... .++ -..+++..++.+.+|. |++++|+..+.......
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~-~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~ 100 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELA-LNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKA 100 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHh-cCc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCc
Confidence 348899999999999999999 99999999999998432 333 2566777777766666 99999999998776655
Q ss_pred hhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-CCCCC--HHH----HHHHHHhhccCCCCceeHHHHHHHHhhcc
Q 031260 83 VLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKM-GHPLT--YGE----LSEMMREADTNGDGVISFNEFATIMAKSA 154 (163)
Q Consensus 83 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~--~~~----~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 154 (163)
... ..++-+|+.||.+++|+|+++++.+++..+ +...+ ++. ++.++..+|.++||.|+++||.+.+.+.|
T Consensus 101 ~~~--~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 101 SKR--EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred cHH--HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCc
Confidence 443 689999999999999999999999999985 43444 333 56678889999999999999999998874
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.85 E-value=9.8e-20 Score=120.03 Aligned_cols=133 Identities=26% Similarity=0.392 Sum_probs=123.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHH
Q 031260 12 LKQLKDIFMRFDMDSDGSLTQLELAALLRALGL-KPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQL 90 (163)
Q Consensus 12 ~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 90 (163)
-..+...|...|+++.|+|+.+|+.++|...+. ..+.+.+..+...++.+..|.|+++||..++... ..|
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i---------~~W 126 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI---------NQW 126 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH---------HHH
Confidence 347889999999999999999999999996554 7888999999999999999999999999998755 799
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 91 MEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 91 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
+.+|+.+|+|+.|.|+..||+.+|..+|..++++-++.++++++..++|.|.+++|++++...
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998889999999999998754
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.82 E-value=6e-19 Score=116.53 Aligned_cols=145 Identities=20% Similarity=0.313 Sum_probs=121.7
Q ss_pred ccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHh
Q 031260 5 ETVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGL-KPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQV 83 (163)
Q Consensus 5 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~ 83 (163)
..+++.++..+.+-|.. ..++|.++.++|..++..+.. .-+...+..+|+.+|.+++|.|++.||+.++...++...
T Consensus 21 t~f~~~ei~~~Yr~Fk~--~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~ 98 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKN--ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTL 98 (193)
T ss_pred cCCCHHHHHHHHHHhcc--cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcH
Confidence 35778888888888877 345999999999999999875 445667899999999999999999999999987776655
Q ss_pred hhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh----CC-------CCCHHHHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 84 LINQEQLMEVFRSFDRDGNGHITAAELAGSMAKM----GH-------PLTYGELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 84 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
. +.+.++|+.||.+++|+|+++|+..++.++ +. .-.++.++.+|..+|.|+||.||++||......
T Consensus 99 e---ekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 99 E---EKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred H---HHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 5 788899999999999999999999988774 32 123456899999999999999999999998876
Q ss_pred cc
Q 031260 153 SA 154 (163)
Q Consensus 153 ~~ 154 (163)
.+
T Consensus 176 d~ 177 (193)
T KOG0044|consen 176 DP 177 (193)
T ss_pred CH
Confidence 53
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.76 E-value=7.9e-17 Score=115.16 Aligned_cols=141 Identities=21% Similarity=0.380 Sum_probs=128.8
Q ss_pred cccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhh
Q 031260 6 TVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLK-PTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVL 84 (163)
Q Consensus 6 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~ 84 (163)
...++...++...|..+|.+++|.++..++.+.+..+..+ +..+.+..+++.++.+.+|.++|.+|...+...
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------ 80 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------ 80 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh------
Confidence 3567777889999999999999999999999999998876 778889999999999999999999999887422
Q ss_pred hcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhcc
Q 031260 85 INQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKSA 154 (163)
Q Consensus 85 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 154 (163)
+.++..+|..+|.+.||.|+.+|+.+.|+.+|..++.++++.+++.+|+++.+.|+++||-+.+.-.+
T Consensus 81 --E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 81 --ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred --HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC
Confidence 26889999999999999999999999999999999999999999999999999999999999887554
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.59 E-value=5.2e-14 Score=108.15 Aligned_cols=121 Identities=22% Similarity=0.331 Sum_probs=102.1
Q ss_pred ccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC-CCCCHHH---HHHHHHhhCCCCCCceeHhHHHHHHchhhh
Q 031260 5 ETVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALG-LKPTGDQ---LHILLADMDSNGNGLVEFDELVALILPDIS 80 (163)
Q Consensus 5 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~ 80 (163)
..+...++..++++|..+|++++|.+ +..+++.+| ..++..+ +..++..+|.+++|.|+++||+.++....
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg- 209 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG- 209 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc-
Confidence 45778899999999999999999997 888999999 5888887 89999999999999999999999987532
Q ss_pred hHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-------------hCCCCCH-HHHHHHHHh
Q 031260 81 EQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAK-------------MGHPLTY-GELSEMMRE 132 (163)
Q Consensus 81 ~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-------------~~~~~~~-~~~~~~~~~ 132 (163)
. ....+++..+|+.+|++++|+|+.+||.+++.. ++..++. .+++.+.+.
T Consensus 210 ~--~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH~ 273 (644)
T PLN02964 210 N--LVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIHM 273 (644)
T ss_pred c--CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHHH
Confidence 1 123478999999999999999999999999988 6666665 556666643
No 13
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2e-13 Score=95.34 Aligned_cols=146 Identities=24% Similarity=0.334 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhh-------hh
Q 031260 9 SEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDI-------SE 81 (163)
Q Consensus 9 ~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~-------~~ 81 (163)
.+...++..++..+|.+++|+|+..++..++....-.....+..+-+..++.+.+|.|+|+++........ ..
T Consensus 73 ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~ 152 (325)
T KOG4223|consen 73 EESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDE 152 (325)
T ss_pred chhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccc
Confidence 34566799999999999999999999999998765566677788888889999999999999988876421 00
Q ss_pred HhhhcH----HHHHHHHHhhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhcc
Q 031260 82 QVLINQ----EQLMEVFRSFDRDGNGHITAAELAGSMAKMG-HPLTYGELSEMMREADTNGDGVISFNEFATIMAKSA 154 (163)
Q Consensus 82 ~~~~~~----~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 154 (163)
...... ..-..-|+..|.|++|.+|++||..+|..-- .++.+-.+.+-+...|.|+||.|+++||+.-+-...
T Consensus 153 e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 153 EDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred hhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 000111 2345679999999999999999999996643 235555688889999999999999999998887654
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.52 E-value=1.3e-13 Score=76.99 Aligned_cols=62 Identities=42% Similarity=0.805 Sum_probs=54.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHH----HHHHHHhhccCCCCceeHHHHHHHH
Q 031260 89 QLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGE----LSEMMREADTNGDGVISFNEFATIM 150 (163)
Q Consensus 89 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~----~~~~~~~~d~~~~g~i~~~ef~~~l 150 (163)
.++.+|+.+|++++|+|+.+||..++..++...++.. ++.+++.+|.|++|.|+++||.+++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3688999999999999999999999999987765555 5555999999999999999999875
No 15
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.51 E-value=9.2e-14 Score=81.44 Aligned_cols=66 Identities=29% Similarity=0.441 Sum_probs=61.9
Q ss_pred HHHHHHHHhhCC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 88 EQLMEVFRSFDR-DGNGHITAAELAGSMAK-MGHPLTY-GELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 88 ~~~~~~f~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
..+..+|+.||+ +++|+|+..||+.++.. +|..++. ++++.+++.+|.|+||.|+|+||+.++...
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 678999999999 99999999999999999 8887888 899999999999999999999999998765
No 16
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.50 E-value=1.5e-12 Score=81.02 Aligned_cols=147 Identities=20% Similarity=0.336 Sum_probs=105.3
Q ss_pred ccHHHHHHHHHHHHhhCCCC-----------CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHH
Q 031260 7 VQSEQLKQLKDIFMRFDMDS-----------DGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALI 75 (163)
Q Consensus 7 l~~~~~~~l~~~f~~~D~~~-----------~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 75 (163)
++..++-++...|+.+.|+. .-.++.+.+.++- .+..++-. +++...++.++.|.+++++|+..+
T Consensus 22 FtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMP-ELkenpfk---~ri~e~FSeDG~GnlsfddFlDmf 97 (189)
T KOG0038|consen 22 FTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMP-ELKENPFK---RRICEVFSEDGRGNLSFDDFLDMF 97 (189)
T ss_pred ccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhCh-hhhcChHH---HHHHHHhccCCCCcccHHHHHHHH
Confidence 45667778888888776641 1244455444433 23333433 345555667899999999999998
Q ss_pred chhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-CCCCCHHHH----HHHHHhhccCCCCceeHHHHHHHH
Q 031260 76 LPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKM-GHPLTYGEL----SEMMREADTNGDGVISFNEFATIM 150 (163)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~----~~~~~~~d~~~~g~i~~~ef~~~l 150 (163)
.-....... .-....+|+.||-+++++|...++...+..+ ...++++++ +.+++..|.|+||++++.+|...+
T Consensus 98 SV~sE~APr--dlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 98 SVFSEMAPR--DLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred HHHHhhChH--HhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 654332211 1466789999999999999999999999875 446787775 556777899999999999999999
Q ss_pred hhccCccccc
Q 031260 151 AKSAADFLGL 160 (163)
Q Consensus 151 ~~~~~~~~~~ 160 (163)
.+. ++|+++
T Consensus 176 ~ra-PDFlsT 184 (189)
T KOG0038|consen 176 LRA-PDFLST 184 (189)
T ss_pred HhC-cchHhh
Confidence 887 567654
No 17
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=3.8e-13 Score=93.94 Aligned_cols=139 Identities=22% Similarity=0.310 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhc--
Q 031260 10 EQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGL-KPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLIN-- 86 (163)
Q Consensus 10 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~-- 86 (163)
..+.+-+..|+..|.|++|.++.+||..+|..--. ....--+..-....|+|++|+|+++||+.-+-........+.
T Consensus 160 km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv 239 (325)
T KOG4223|consen 160 KMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWV 239 (325)
T ss_pred HHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccc
Confidence 45667789999999999999999999999874332 222333566677789999999999999887755443211111
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHH
Q 031260 87 QEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFAT 148 (163)
Q Consensus 87 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 148 (163)
..+-...+...|+|++|+++.+|++..+...+....+.+...++...|.|+||++|++|-+.
T Consensus 240 ~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 240 LTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred cccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 12334678888999999999999999998888888999999999999999999999999765
No 18
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.46 E-value=8.8e-13 Score=87.43 Aligned_cols=92 Identities=26% Similarity=0.491 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHH
Q 031260 12 LKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLM 91 (163)
Q Consensus 12 ~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 91 (163)
+..|+.+|+.+|.|++|.|+..||..+|..+|+.++.+-.+.++++++....|.|.+++|+++|... ..+.
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L---------~~lt 193 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL---------QRLT 193 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH---------HHHH
Confidence 5567788888888888888888888888888888888888888888876667778888888877543 5677
Q ss_pred HHHHhhCCCCCCccc--HHHHHH
Q 031260 92 EVFRSFDRDGNGHIT--AAELAG 112 (163)
Q Consensus 92 ~~f~~~D~~~~g~i~--~~e~~~ 112 (163)
++|+.+|++..|.|+ .++|.+
T Consensus 194 ~~Fr~~D~~q~G~i~~~y~dfl~ 216 (221)
T KOG0037|consen 194 EAFRRRDTAQQGSITISYDDFLQ 216 (221)
T ss_pred HHHHHhccccceeEEEeHHHHHH
Confidence 788888888777644 444433
No 19
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.45 E-value=7.9e-13 Score=77.56 Aligned_cols=66 Identities=24% Similarity=0.490 Sum_probs=61.3
Q ss_pred HHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 88 EQLMEVFRSFD-RDGNG-HITAAELAGSMAK-----MGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 88 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
..+..+|+.|| ++++| +|+.++|+.+|+. +|...++++++.+++.+|.|++|.|+|++|+.++...
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 57899999998 79999 6999999999999 8888899999999999999999999999999988754
No 20
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.42 E-value=1.8e-11 Score=88.96 Aligned_cols=138 Identities=24% Similarity=0.362 Sum_probs=107.8
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhh---------hHh
Q 031260 14 QLKDIFMRFDMDSDGSLTQLELAALLRA-LGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDIS---------EQV 83 (163)
Q Consensus 14 ~l~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~---------~~~ 83 (163)
.+..-|+.+|+.++|.|+..+...++.. +|+.++..-...- ....+.+|.+.|....+.+..... +..
T Consensus 465 dL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~k--la~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 465 DLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPK--LANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred HHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhh--ccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 4778899999999999999999998885 4556554333221 123456789999988777643222 222
Q ss_pred hhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 84 LINQEQLMEVFRSFDRDGNGHITAAELAGSMAKM----GHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 84 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
...+..+..+|+.+|.|+.|.|+.+||+.+++-+ +.+++..++..+.+.+|.|+||.|++.||++.++-.
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 3335678899999999999999999999998775 556889999999999999999999999999988643
No 21
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.40 E-value=5.2e-12 Score=81.83 Aligned_cols=104 Identities=28% Similarity=0.421 Sum_probs=89.3
Q ss_pred HHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC-----C
Q 031260 48 GDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPL-----T 122 (163)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-----~ 122 (163)
..++..+|..++.+++|.|+..++..++...... +....+..++..+|.+++|.|+..+|..++...+... +
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~---~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~ 83 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQN---PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEAS 83 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccccc
Confidence 4568899999999999999999999888655444 3348999999999999999999999999998865432 3
Q ss_pred HHHHHHHHHhhccCCCCceeHHHHHHHHhhcc
Q 031260 123 YGELSEMMREADTNGDGVISFNEFATIMAKSA 154 (163)
Q Consensus 123 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 154 (163)
.+++..+|+.+|.+++|.|+..++..++....
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg 115 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLG 115 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC
Confidence 45899999999999999999999999998753
No 22
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.37 E-value=4.5e-12 Score=70.64 Aligned_cols=61 Identities=31% Similarity=0.688 Sum_probs=48.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHH----HHHHHHhhCCCCCCceeHhHHHHH
Q 031260 14 QLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQ----LHILLADMDSNGNGLVEFDELVAL 74 (163)
Q Consensus 14 ~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~ef~~~ 74 (163)
+++.+|..+|.+++|+|+.+||..++..++...+... +..+++.+|.+++|.|+|+||+.+
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 4788999999999999999999999999987665433 444477777777777777777765
No 23
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.37 E-value=6.3e-12 Score=73.68 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhhCC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHhhCCCCCCceeHhHHHHHHchhh
Q 031260 9 SEQLKQLKDIFMRFDM-DSDGSLTQLELAALLRA-LGLKPTG-DQLHILLADMDSNGNGLVEFDELVALILPDI 79 (163)
Q Consensus 9 ~~~~~~l~~~f~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 79 (163)
+..+..+..+|+.+|+ +++|+|+..+|+.++.. ++..++. .++..+++..|.+++|.|+|+||+.++....
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 4567889999999999 99999999999999998 8877777 9999999999999999999999999987553
No 24
>PTZ00183 centrin; Provisional
Probab=99.35 E-value=2.7e-11 Score=78.89 Aligned_cols=102 Identities=22% Similarity=0.328 Sum_probs=85.0
Q ss_pred HHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHH
Q 031260 49 DQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKM-GHPLTYGELS 127 (163)
Q Consensus 49 ~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~ 127 (163)
.++..+|..+|.+++|.|++.+|..++...-.. .....+..+|..+|.+++|.|+..+|..++... ......+.+.
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~---~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~ 93 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFE---PKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEIL 93 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHH
Confidence 457788999999999999999999888643211 223678999999999999999999999988764 3445677899
Q ss_pred HHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 128 EMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 128 ~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
.+|..+|.+++|.|+.++|..++...
T Consensus 94 ~~F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 94 KAFRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 99999999999999999999998754
No 25
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.35 E-value=8.2e-12 Score=74.46 Aligned_cols=66 Identities=27% Similarity=0.501 Sum_probs=59.8
Q ss_pred HHHHHHHHhhCC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 88 EQLMEVFRSFDR-DG-NGHITAAELAGSMAK-----MGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 88 ~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
..+..+|..+|. ++ +|.|+.+|++.++.. +|..+++++++.++..+|.+++|.|+|++|++++...
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 678999999997 87 699999999999986 4667899999999999999999999999999988764
No 26
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.34 E-value=1.1e-11 Score=72.73 Aligned_cols=66 Identities=24% Similarity=0.524 Sum_probs=59.8
Q ss_pred HHHHHHHHhhCC-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 88 EQLMEVFRSFDR-DG-NGHITAAELAGSMAK---MGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 88 ~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
..+..+|..||. ++ +|+|+.+||++++.. +|..+++++++.+++.+|.|++|+|+|++|+.++...
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 567889999997 67 899999999999973 6888999999999999999999999999999998764
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.34 E-value=1.8e-11 Score=71.84 Aligned_cols=70 Identities=23% Similarity=0.444 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchh
Q 031260 9 SEQLKQLKDIFMRFD-MDSDG-SLTQLELAALLRA-----LGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPD 78 (163)
Q Consensus 9 ~~~~~~l~~~f~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 78 (163)
+..+..+..+|+.+| ++++| .|+..++..+++. +|..++..++..+++.++.+++|.|+|++|+.++...
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456788999999998 79999 5999999999999 8888999999999999999999999999999887644
No 28
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.33 E-value=1.5e-11 Score=73.10 Aligned_cols=66 Identities=27% Similarity=0.556 Sum_probs=58.7
Q ss_pred HHHHHHHHhhC-CCCCCc-ccHHHHHHHHHH-hC----CCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 88 EQLMEVFRSFD-RDGNGH-ITAAELAGSMAK-MG----HPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 88 ~~~~~~f~~~D-~~~~g~-i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
..++.+|..|| .+++|+ |+..+++.+|+. +| ...++++++.++..+|.+++|.|+|++|+.++...
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 67899999997 999995 999999999986 44 34688999999999999999999999999988764
No 29
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.31 E-value=1.4e-11 Score=65.87 Aligned_cols=52 Identities=40% Similarity=0.730 Sum_probs=49.0
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 101 GNGHITAAELAGSMAKMGHP-LTYGELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 101 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
.+|.|+.++|+.++..+|.. +++++++.++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 99999999999999999999999999999865
No 30
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.31 E-value=2e-11 Score=72.53 Aligned_cols=66 Identities=21% Similarity=0.479 Sum_probs=57.5
Q ss_pred HHHHHHHHhhC-CCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 88 EQLMEVFRSFD-RDGNG-HITAAELAGSMAKM-----GHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 88 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
..+..+|..|| ++++| .|+..||+.++... +...++.+++.+++.+|.|++|.|+|+||+.++...
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 67888999999 78998 59999999999762 334577899999999999999999999999998764
No 31
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.31 E-value=2.2e-11 Score=80.80 Aligned_cols=104 Identities=20% Similarity=0.357 Sum_probs=86.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhh--------hHhh
Q 031260 13 KQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDIS--------EQVL 84 (163)
Q Consensus 13 ~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~--------~~~~ 84 (163)
.-...+|+.+|.+++|.|+..||..++..+......+-....|+.||.+++|.|+++|++..+..... ....
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~ 143 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEE 143 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccc
Confidence 34577899999999999999999999887766666777788899999999999999999998854321 1222
Q ss_pred hcHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031260 85 INQEQLMEVFRSFDRDGNGHITAAELAGSMAK 116 (163)
Q Consensus 85 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 116 (163)
...+.+..+|+.+|.|+||.||.+||.....+
T Consensus 144 ~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 144 TPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred cHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 23477889999999999999999999998864
No 32
>PTZ00184 calmodulin; Provisional
Probab=99.29 E-value=1e-10 Score=75.30 Aligned_cols=102 Identities=24% Similarity=0.361 Sum_probs=83.5
Q ss_pred HHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHH
Q 031260 49 DQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKM-GHPLTYGELS 127 (163)
Q Consensus 49 ~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~ 127 (163)
+.+...|..+|.+++|.|++.+|..++...-.. .....+..+|+.+|.+++|.|+.++|..++... ........+.
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 87 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN---PTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIK 87 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCC---CCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHH
Confidence 346678888999999999999999887533211 223688999999999999999999999998764 3334566789
Q ss_pred HHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 128 EMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 128 ~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
.+|..+|.+++|.|+.++|..++...
T Consensus 88 ~~F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 88 EAFKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HHHHhhCCCCCCeEeHHHHHHHHHHH
Confidence 99999999999999999999988764
No 33
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.29 E-value=2.7e-11 Score=72.49 Aligned_cols=65 Identities=29% Similarity=0.439 Sum_probs=60.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhcc
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKSA 154 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 154 (163)
..++.+|..+|++++|.|+.++++.+++..| ++++++..++..++.+++|.|++++|+.++....
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 6789999999999999999999999999865 6889999999999999999999999999887653
No 34
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.28 E-value=2.4e-11 Score=67.80 Aligned_cols=61 Identities=36% Similarity=0.509 Sum_probs=55.8
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 91 MEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 91 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
+.+|..+|++++|.|+.+++..++...| ++++++..++..++.+++|.|++++|+..+...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 5689999999999999999999999887 488899999999999999999999999988643
No 35
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.28 E-value=5.6e-11 Score=71.14 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=64.5
Q ss_pred cccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchh
Q 031260 6 TVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPD 78 (163)
Q Consensus 6 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 78 (163)
.++++++..+..+|..+|.+++|.|+.+++..+++..+ ++.+++..++..++.+++|.|+|++|+.++...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 36788999999999999999999999999999999875 678899999999999999999999999887543
No 36
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.26 E-value=1.7e-10 Score=74.17 Aligned_cols=101 Identities=21% Similarity=0.331 Sum_probs=84.5
Q ss_pred HHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHH
Q 031260 49 DQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKM-GHPLTYGELS 127 (163)
Q Consensus 49 ~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~ 127 (163)
+++++.|..++.+++|.|++.++..++.. .... .+...+..++..+|. +.|.|+..+|..++... ...-+++++.
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~-lg~~--~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~ 95 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRS-LGFN--PSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELR 95 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHH-cCCC--CcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHH
Confidence 34567788889999999999999998762 2222 223789999999999 99999999999999774 3456788999
Q ss_pred HHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 128 EMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 128 ~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
..|+.||.|++|.|+..++..++...
T Consensus 96 ~aF~~fD~d~dG~Is~~eL~~vl~~l 121 (160)
T COG5126 96 EAFKLFDKDHDGYISIGELRRVLKSL 121 (160)
T ss_pred HHHHHhCCCCCceecHHHHHHHHHhh
Confidence 99999999999999999999999854
No 37
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.25 E-value=5.7e-11 Score=70.01 Aligned_cols=66 Identities=23% Similarity=0.489 Sum_probs=58.8
Q ss_pred HHHHHHHHhhCC--CCCCcccHHHHHHHHHH-hCCCC----CHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 88 EQLMEVFRSFDR--DGNGHITAAELAGSMAK-MGHPL----TYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 88 ~~~~~~f~~~D~--~~~g~i~~~e~~~~l~~-~~~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
..++.+|..+|+ +++|.|+.+++..++.. +|..+ +.++++.++..++.+++|.|+|++|+.++...
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 678899999999 89999999999999986 55443 58899999999999999999999999988764
No 38
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.24 E-value=1.3e-10 Score=84.88 Aligned_cols=132 Identities=19% Similarity=0.306 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh----CCCCCCceeHhHHHHHHchhhhhHhhhc
Q 031260 11 QLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADM----DSNGNGLVEFDELVALILPDISEQVLIN 86 (163)
Q Consensus 11 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~ef~~~~~~~~~~~~~~~ 86 (163)
.-..+.-.|..+|.+++|.|+.+++...-... .+.--+++||+.+ ....+|.++|++|+.++.........
T Consensus 276 ~f~viy~kFweLD~Dhd~lidk~~L~ry~d~t---lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~-- 350 (493)
T KOG2562|consen 276 HFYVIYCKFWELDTDHDGLIDKEDLKRYGDHT---LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTP-- 350 (493)
T ss_pred HHHHHHHHHhhhccccccccCHHHHHHHhccc---hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCc--
Confidence 33445556899999999999999998766543 4455688898833 23457889999999999876554444
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-------CC-CCC-HHHHHHHHHhhccCCCCceeHHHHHH
Q 031260 87 QEQLMEVFRSFDRDGNGHITAAELAGSMAKM-------GH-PLT-YGELSEMMREADTNGDGVISFNEFAT 148 (163)
Q Consensus 87 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~~-~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~ 148 (163)
..+..+|+++|.+++|.|+.+|++.+.... |. .++ +..++++++...+...++|+.++|..
T Consensus 351 -~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 351 -ASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred -cchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 789999999999999999999999887653 22 233 44578899999888899999999987
No 39
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.24 E-value=1e-10 Score=63.80 Aligned_cols=61 Identities=48% Similarity=0.855 Sum_probs=57.6
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHH
Q 031260 90 LMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIM 150 (163)
Q Consensus 90 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 150 (163)
+..+|..+|.+++|.|+..++..++..++...+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999999876
No 40
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.21 E-value=2e-10 Score=68.20 Aligned_cols=71 Identities=27% Similarity=0.516 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhh
Q 031260 9 SEQLKQLKDIFMRFD-MDSDG-SLTQLELAALLRA-LG----LKPTGDQLHILLADMDSNGNGLVEFDELVALILPDI 79 (163)
Q Consensus 9 ~~~~~~l~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 79 (163)
+..+..+.++|..+| .+++| .|+..++..+++. +| ..++.+++..+++.++.+++|.|+|++|+.++....
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 445678999999997 99999 5999999999985 44 357899999999999999999999999999886543
No 41
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.20 E-value=1.8e-10 Score=67.53 Aligned_cols=71 Identities=24% Similarity=0.421 Sum_probs=63.0
Q ss_pred cHHHHHHHHHHHHhhCC-CC-CCcccHHHHHHHHH---HhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchh
Q 031260 8 QSEQLKQLKDIFMRFDM-DS-DGSLTQLELAALLR---ALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPD 78 (163)
Q Consensus 8 ~~~~~~~l~~~f~~~D~-~~-~g~i~~~e~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 78 (163)
-++.+..+..+|..+|. ++ +|.|+..||..++. .+|..++.+++..+++.+|.+++|.|+|++|+.++...
T Consensus 5 ~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 5 LDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 45677789999999998 66 89999999999997 36888999999999999999999999999999887644
No 42
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.19 E-value=2.2e-10 Score=67.50 Aligned_cols=70 Identities=24% Similarity=0.433 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhhCC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHhhCCCCCCceeHhHHHHHHchh
Q 031260 9 SEQLKQLKDIFMRFDM--DSDGSLTQLELAALLRA-LGLK----PTGDQLHILLADMDSNGNGLVEFDELVALILPD 78 (163)
Q Consensus 9 ~~~~~~l~~~f~~~D~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 78 (163)
++++..++.+|..+|. +++|.|+..++..+++. +|.. ++.+++..++..++.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5678889999999999 89999999999999986 4543 458999999999999999999999999988754
No 43
>PLN02964 phosphatidylserine decarboxylase
Probab=99.18 E-value=4.5e-10 Score=86.87 Aligned_cols=103 Identities=18% Similarity=0.331 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHH
Q 031260 48 GDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELS 127 (163)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~ 127 (163)
.+++.+.|..+|.+++|.+ .......+... .........+..+|+.+|.+++|.|+.+||..++..++...+++++.
T Consensus 142 i~elkeaF~lfD~dgdG~i-Lg~ilrslG~~--~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~ 218 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV-VGSIFVSCSIE--DPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKE 218 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC-HHHHHHHhCCC--CCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHH
Confidence 3567888999999999986 33333333210 11111113489999999999999999999999999988778899999
Q ss_pred HHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 128 EMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 128 ~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
.+|+.+|.|++|.|+++||.+++...
T Consensus 219 eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 219 ELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 99999999999999999999999874
No 44
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.18 E-value=5.7e-10 Score=91.02 Aligned_cols=136 Identities=26% Similarity=0.473 Sum_probs=111.1
Q ss_pred cccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCC-------HHHHHHHHHhhCCCCCCceeHhHHHHHHchh
Q 031260 6 TVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPT-------GDQLHILLADMDSNGNGLVEFDELVALILPD 78 (163)
Q Consensus 6 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 78 (163)
.++++....+.-+|..||.+.+|+++..+|..+|+.+|+.++ +.+++.+...+|++.+|.|+..+|..++...
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 478999999999999999999999999999999999998763 2379999999999999999999999998766
Q ss_pred hhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh----ccC----CCCceeHHHHHHHH
Q 031260 79 ISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREA----DTN----GDGVISFNEFATIM 150 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~----d~~----~~g~i~~~ef~~~l 150 (163)
....... ...|..+|+.+|. +.-||+..++... +++++++.++..+ ++. -.+.++|.+|++.+
T Consensus 2326 ETeNI~s-~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2326 ETENILS-SEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred ccccccc-hHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 5554443 3589999999998 8889999886554 4667766666665 332 12469999998765
No 45
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.18 E-value=2.8e-10 Score=67.85 Aligned_cols=69 Identities=26% Similarity=0.421 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhCC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchh
Q 031260 10 EQLKQLKDIFMRFDM-DS-DGSLTQLELAALLRA-----LGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPD 78 (163)
Q Consensus 10 ~~~~~l~~~f~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 78 (163)
.....+..+|..+|. ++ +|.|+..|+..++.. +|..++.+++..++..++.+++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456779999999997 87 699999999999986 5678899999999999999999999999999887643
No 46
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.17 E-value=3.2e-10 Score=66.66 Aligned_cols=66 Identities=29% Similarity=0.521 Sum_probs=57.4
Q ss_pred HHHHHHHHh-hCCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 88 EQLMEVFRS-FDRDGNG-HITAAELAGSMAKM-----GHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 88 ~~~~~~f~~-~D~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
..+..+|.. +|++++| .|+.+||+.++... +...++.+++.++..+|.|+||.|+|+||++++...
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 678899999 6788876 99999999999885 334567899999999999999999999999988764
No 47
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.17 E-value=4.1e-10 Score=66.91 Aligned_cols=70 Identities=27% Similarity=0.429 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-h----CCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchh
Q 031260 9 SEQLKQLKDIFMRFD-MDSDG-SLTQLELAALLRA-L----GLKPTGDQLHILLADMDSNGNGLVEFDELVALILPD 78 (163)
Q Consensus 9 ~~~~~~l~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 78 (163)
+..+..+.++|+.+| .+++| .|+..||..++.. + ....+..++..+++.+|.+++|.|+|+||+.++...
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 456778899999999 78998 5999999999976 2 334578899999999999999999999999988654
No 48
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.16 E-value=4.6e-10 Score=81.56 Aligned_cols=133 Identities=19% Similarity=0.258 Sum_probs=101.4
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCC-CCCH--HHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHH
Q 031260 15 LKDIFMRFDMDSDGSLTQLELAALLRALGL-KPTG--DQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLM 91 (163)
Q Consensus 15 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 91 (163)
+.--|..+|+..+|.|+..+|..++..... +... ...+++-+.+... +..|+++||..++.-.-.- ..+.
T Consensus 320 l~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l------~dfd 392 (489)
T KOG2643|consen 320 LELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNL------NDFD 392 (489)
T ss_pred HHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhh------hHHH
Confidence 344588999999999999999998876542 2222 2356677777555 4459999999987533211 3445
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhccC
Q 031260 92 EVFRSFDRDGNGHITAAELAGSMAK-MGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKSAA 155 (163)
Q Consensus 92 ~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 155 (163)
.+...| ....+.|+..+|+++... +|..+++..++.+|..||.|+||.|+++||+..++++..
T Consensus 393 ~Al~fy-~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmh 456 (489)
T KOG2643|consen 393 IALRFY-HMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRMH 456 (489)
T ss_pred HHHHHH-HHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHHhh
Confidence 555555 235588999999999877 689999889999999999999999999999999998743
No 49
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.16 E-value=6.2e-10 Score=68.43 Aligned_cols=61 Identities=21% Similarity=0.305 Sum_probs=54.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
..+..+|..+|.|++|.|+.+|+..+. ....+..+..++..+|.|+||.||++||..++.+
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 688999999999999999999999876 2245677899999999999999999999999943
No 50
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=1.2e-09 Score=69.20 Aligned_cols=104 Identities=19% Similarity=0.313 Sum_probs=87.9
Q ss_pred HHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHH
Q 031260 49 DQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAK-MGHPLTYGELS 127 (163)
Q Consensus 49 ~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~ 127 (163)
++++..|..++.+++|.|+++++..+....--. ....++..+..-+|+++.|.|+.++|+..+.. ++..-+.+++.
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE---~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~ 109 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFE---PKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIK 109 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCC---cchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHH
Confidence 568889999999999999999996655433222 23378899999999999999999999999765 67667999999
Q ss_pred HHHHhhccCCCCceeHHHHHHHHhhccC
Q 031260 128 EMMREADTNGDGVISFNEFATIMAKSAA 155 (163)
Q Consensus 128 ~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 155 (163)
..|+.+|.+++|.|++.+|..+....+.
T Consensus 110 ~afrl~D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 110 KAFRLFDDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred HHHHcccccCCCCcCHHHHHHHHHHhCc
Confidence 9999999999999999999999887654
No 51
>PF14658 EF-hand_9: EF-hand domain
Probab=99.14 E-value=3.9e-10 Score=61.41 Aligned_cols=62 Identities=24% Similarity=0.491 Sum_probs=58.0
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhccCCC-CceeHHHHHHHHhhc
Q 031260 92 EVFRSFDRDGNGHITAAELAGSMAKMGH-PLTYGELSEMMREADTNGD-GVISFNEFATIMAKS 153 (163)
Q Consensus 92 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~l~~~ 153 (163)
.+|..+|+++.|.|...++..+|++++. ..++.+++.+...+|+++. |.|++++|+..|+.+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 4799999999999999999999999988 8889999999999999997 999999999999864
No 52
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=99.12 E-value=7.3e-10 Score=75.10 Aligned_cols=145 Identities=18% Similarity=0.322 Sum_probs=99.5
Q ss_pred cHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhh
Q 031260 8 QSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALG---LKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVL 84 (163)
Q Consensus 8 ~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~ 84 (163)
+....+.++.+|.+.|.|.+|.|+..++++++..-. +.-+-++.+.-|+.+|++++|.|+|++|..-+.........
T Consensus 96 prrsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsek 175 (362)
T KOG4251|consen 96 PRRSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEK 175 (362)
T ss_pred hhHHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchH
Confidence 345667899999999999999999999999887431 12233455677889999999999999997766321000000
Q ss_pred h-----------------------------------------------------c----HHHHHHHHHhhCCCCCCcccH
Q 031260 85 I-----------------------------------------------------N----QEQLMEVFRSFDRDGNGHITA 107 (163)
Q Consensus 85 ~-----------------------------------------------------~----~~~~~~~f~~~D~~~~g~i~~ 107 (163)
. + ..-+..+-..+|++++..++.
T Consensus 176 evadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSv 255 (362)
T KOG4251|consen 176 EVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSV 255 (362)
T ss_pred HHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecc
Confidence 0 0 112345667788888888888
Q ss_pred HHHHHHHHH-----hCCCCCHH----HHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 108 AELAGSMAK-----MGHPLTYG----ELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 108 ~e~~~~l~~-----~~~~~~~~----~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
.+|....-. .|..+... ...++-+.+|.|+||.++++++..++..
T Consensus 256 peFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP 309 (362)
T KOG4251|consen 256 PEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDP 309 (362)
T ss_pred hhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCc
Confidence 888765422 23333322 2456666678899999999999888644
No 53
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.11 E-value=4.8e-10 Score=62.48 Aligned_cols=60 Identities=23% Similarity=0.335 Sum_probs=54.7
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHch
Q 031260 16 KDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILP 77 (163)
Q Consensus 16 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 77 (163)
+++|..+|++++|.|+..++..++..+|. +.+++..++..++.+++|.|+|++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 57899999999999999999999998874 7889999999999999999999999988753
No 54
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.09 E-value=6.3e-10 Score=59.35 Aligned_cols=51 Identities=29% Similarity=0.675 Sum_probs=47.8
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCCceeHhHHHHHHc
Q 031260 26 SDGSLTQLELAALLRALGLK-PTGDQLHILLADMDSNGNGLVEFDELVALIL 76 (163)
Q Consensus 26 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 76 (163)
++|.|+.++|..++..+|.. ++.+++..++..+|.+++|.|+|+||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 47999999999999888999 9999999999999999999999999998874
No 55
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.08 E-value=1.3e-09 Score=59.30 Aligned_cols=61 Identities=31% Similarity=0.684 Sum_probs=56.9
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHH
Q 031260 15 LKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALI 75 (163)
Q Consensus 15 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 75 (163)
+..+|..+|.+++|.|+..++..++..++...+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998764
No 56
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.06 E-value=5.8e-09 Score=69.30 Aligned_cols=101 Identities=25% Similarity=0.389 Sum_probs=84.5
Q ss_pred HHHHHhhCCCCCCc-ccHHHHHHHHHHhCCCCCHH-HHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhh--h--cHHH
Q 031260 16 KDIFMRFDMDSDGS-LTQLELAALLRALGLKPTGD-QLHILLADMDSNGNGLVEFDELVALILPDISEQVL--I--NQEQ 89 (163)
Q Consensus 16 ~~~f~~~D~~~~g~-i~~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~--~--~~~~ 89 (163)
.+++..++++++|. |+.++|.+++..+....+.+ -+.-.|+.||.+++|.|+.+++.+.+......... . -.+-
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 56788889988888 99999999999887666555 68889999999999999999999999877664222 1 1245
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031260 90 LMEVFRSFDRDGNGHITAAELAGSMAK 116 (163)
Q Consensus 90 ~~~~f~~~D~~~~g~i~~~e~~~~l~~ 116 (163)
+...|..+|.++||.|+.+||..++..
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 667899999999999999999999865
No 57
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.05 E-value=1.3e-09 Score=64.12 Aligned_cols=66 Identities=23% Similarity=0.431 Sum_probs=57.3
Q ss_pred HHHHHHHHhhCCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 88 EQLMEVFRSFDRD--GNGHITAAELAGSMA-KMGHPLT----YGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 88 ~~~~~~f~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
..+...|..|+.. .+|.|+.+||+.++. .+|..++ +++++.++..+|.+++|.|+|++|+.++...
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5778889999865 479999999999997 4565566 8999999999999999999999999998764
No 58
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.02 E-value=4.7e-09 Score=61.67 Aligned_cols=70 Identities=20% Similarity=0.347 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHh-hCCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchh
Q 031260 9 SEQLKQLKDIFMR-FDMDSDG-SLTQLELAALLRAL-----GLKPTGDQLHILLADMDSNGNGLVEFDELVALILPD 78 (163)
Q Consensus 9 ~~~~~~l~~~f~~-~D~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 78 (163)
+..+..|..+|+. .|.+++| .|+..||..++... +...+..++..+++.+|.+++|.|+|+||+.++...
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5677889999999 6787876 99999999999865 335567899999999999999999999999987644
No 59
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.94 E-value=8.7e-09 Score=63.36 Aligned_cols=59 Identities=25% Similarity=0.389 Sum_probs=28.6
Q ss_pred HHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 031260 49 DQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSM 114 (163)
Q Consensus 49 ~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 114 (163)
..+...|..+|.+++|.|+.+|+..+.. . .....+..+|..+|.|++|.||.+||...+
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~l---~----~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIRL---D----PNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHc---c----chHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3344555555555555555555554430 0 011334455555555555555555555555
No 60
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.91 E-value=1.2e-08 Score=59.88 Aligned_cols=70 Identities=17% Similarity=0.416 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhhCCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHhhCCCCCCceeHhHHHHHHchh
Q 031260 9 SEQLKQLKDIFMRFDMD--SDGSLTQLELAALLR-ALGLKPT----GDQLHILLADMDSNGNGLVEFDELVALILPD 78 (163)
Q Consensus 9 ~~~~~~l~~~f~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 78 (163)
+..+..+..+|+.++.. ++|.|+..+|..++. .++..++ ..++..++..++.+++|.|+|++|+.++...
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45677889999999865 479999999999997 5555566 8999999999999999999999999988644
No 61
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.87 E-value=1.8e-08 Score=66.36 Aligned_cols=66 Identities=36% Similarity=0.588 Sum_probs=60.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
+.+..+|+.||.+.||+|+..|++.++..+|.+-|-=-+..++...|.|.+|+|++.+|+=+++..
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 567889999999999999999999999999987776678999999999999999999999888765
No 62
>PF14658 EF-hand_9: EF-hand domain
Probab=98.83 E-value=2.8e-08 Score=54.20 Aligned_cols=60 Identities=30% Similarity=0.547 Sum_probs=56.1
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCC-CceeHhHHHHHHc
Q 031260 17 DIFMRFDMDSDGSLTQLELAALLRALGL-KPTGDQLHILLADMDSNGN-GLVEFDELVALIL 76 (163)
Q Consensus 17 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~i~~~ef~~~~~ 76 (163)
.+|..+|+++.|.+...++..+|+.++. .+++.+++.+.+.+|+++. |.|+++.|+..+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 3689999999999999999999999998 9999999999999999888 9999999998764
No 63
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.77 E-value=7.4e-08 Score=60.87 Aligned_cols=65 Identities=17% Similarity=0.333 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHc
Q 031260 12 LKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALIL 76 (163)
Q Consensus 12 ~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 76 (163)
...+..+|..+|++++|.|+.+.+.++|...|...+.++++.+|+.+..+..|.++|..|+..+.
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 55688999999999999999999999999999999999999999999998899999999998875
No 64
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.77 E-value=1.2e-07 Score=68.81 Aligned_cols=100 Identities=21% Similarity=0.273 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHH
Q 031260 48 GDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELS 127 (163)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~ 127 (163)
+..+..+|..+|.+++|.+++.+....+.....+ .........+|...|.+.+|.++.++|+..+.. .+.++.
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~--~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~ 85 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHP--KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELY 85 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCC--CCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHH
Confidence 4558899999999999999999998777655444 334477889999999999999999999999964 567889
Q ss_pred HHHHhhccCCCCceeHHHHHHHHhhcc
Q 031260 128 EMMREADTNGDGVISFNEFATIMAKSA 154 (163)
Q Consensus 128 ~~~~~~d~~~~g~i~~~ef~~~l~~~~ 154 (163)
.+|..+|.++||.|+.+|.-++++...
T Consensus 86 ~~F~~iD~~hdG~i~~~Ei~~~l~~~g 112 (463)
T KOG0036|consen 86 RIFQSIDLEHDGKIDPNEIWRYLKDLG 112 (463)
T ss_pred HHHhhhccccCCccCHHHHHHHHHHhC
Confidence 999999999999999999999998764
No 65
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.73 E-value=4.5e-07 Score=66.42 Aligned_cols=131 Identities=21% Similarity=0.328 Sum_probs=91.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHH------hCCCC----C-----HHHHHH--HHHhhCCCCCCceeHhHHHHHH
Q 031260 13 KQLKDIFMRFDMDSDGSLTQLELAALLRA------LGLKP----T-----GDQLHI--LLADMDSNGNGLVEFDELVALI 75 (163)
Q Consensus 13 ~~l~~~f~~~D~~~~g~i~~~e~~~~l~~------~~~~~----~-----~~~~~~--~~~~~~~~~~~~i~~~ef~~~~ 75 (163)
+.+..+|+.+|.|+||.|+.+||..+... +|... + .-+++. +..-+..++++.+++++|..+.
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHH
Confidence 45677899999999999999999887642 22210 0 011111 2223578899999999999987
Q ss_pred chhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC-CCCHH--HHHHHHHhhccCCCCceeHHHHHHHHh
Q 031260 76 LPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGH-PLTYG--ELSEMMREADTNGDGVISFNEFATIMA 151 (163)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~--~~~~~~~~~d~~~~g~i~~~ef~~~l~ 151 (163)
..... +-++--|..+|+...|.|+..+|..++-.+.. +.... .+..+-+.+..+ +-.|+++||.++.+
T Consensus 313 e~Lq~-------Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 313 ENLQE-------EILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred HHHHH-------HHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 53321 44566799999999999999999999977532 22111 355666667554 55799999988775
No 66
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.73 E-value=6.8e-08 Score=58.23 Aligned_cols=70 Identities=20% Similarity=0.355 Sum_probs=59.6
Q ss_pred cccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHc
Q 031260 4 METVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALIL 76 (163)
Q Consensus 4 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 76 (163)
|..+++++...+..+|..+++ ++|.|+..+...++...+ ++.+.+..||...|.+++|.++++||+.+++
T Consensus 1 ~~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 1 MPKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp ----SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 467889999999999999986 689999999999998884 6679999999999999999999999988875
No 67
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.71 E-value=2.8e-07 Score=60.85 Aligned_cols=110 Identities=19% Similarity=0.346 Sum_probs=86.0
Q ss_pred ccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhh
Q 031260 5 ETVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVL 84 (163)
Q Consensus 5 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~ 84 (163)
+.++..+|..+..+|..+|.+.+|+|+..|++.++.++|.+-+.-..+.+...++-+.+|+|+|.+|+-++.........
T Consensus 91 ~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~ 170 (244)
T KOG0041|consen 91 SEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQ 170 (244)
T ss_pred hHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccc
Confidence 45778899999999999999999999999999999999999888899999999999999999999999888655443222
Q ss_pred hcHHHHHHH--HHhhCCCCCCcccHHHHHHHHH
Q 031260 85 INQEQLMEV--FRSFDRDGNGHITAAELAGSMA 115 (163)
Q Consensus 85 ~~~~~~~~~--f~~~D~~~~g~i~~~e~~~~l~ 115 (163)
. ...+..+ ....|....|......|=++=.
T Consensus 171 ~-ds~~~~LAr~~eVDVskeGV~GAknFFeAKI 202 (244)
T KOG0041|consen 171 E-DSGLLRLARLSEVDVSKEGVSGAKNFFEAKI 202 (244)
T ss_pred c-chHHHHHHHhcccchhhhhhhhHHHHHHHHH
Confidence 2 1222332 2336777777777666555433
No 68
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.69 E-value=4e-08 Score=45.14 Aligned_cols=27 Identities=48% Similarity=0.804 Sum_probs=16.3
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031260 90 LMEVFRSFDRDGNGHITAAELAGSMAK 116 (163)
Q Consensus 90 ~~~~f~~~D~~~~g~i~~~e~~~~l~~ 116 (163)
++.+|+.+|+|++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 455666666666666666666666543
No 69
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.65 E-value=4.5e-07 Score=52.99 Aligned_cols=65 Identities=22% Similarity=0.387 Sum_probs=54.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHH-h----CCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAK-M----GHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
..+..+|..|. .+.+.++..||+.++.. + +..-.+..++.+++.+|.|+||.|+|+||+.++...
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 56778899997 45679999999999976 2 334467889999999999999999999999988754
No 70
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.58 E-value=2.9e-06 Score=63.30 Aligned_cols=107 Identities=16% Similarity=0.256 Sum_probs=76.4
Q ss_pred cHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH-HhCCCCC-HHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhh
Q 031260 8 QSEQLKQLKDIFMRFDMDSDGSLTQLELAALLR-ALGLKPT-GDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLI 85 (163)
Q Consensus 8 ~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~-~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~ 85 (163)
.+++.+.+--.|...+.++..+++.++|.+... .++.+-. .+.+.-+-+..|..++|-|+|+||+.+=.-.+.+.
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pD--- 107 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPD--- 107 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCch---
Confidence 344444444444555778888999999976544 4455433 44444455556777899999999988765555442
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC
Q 031260 86 NQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGH 119 (163)
Q Consensus 86 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 119 (163)
.....+|..||+.++|.++.+++..++.....
T Consensus 108 --al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l 139 (694)
T KOG0751|consen 108 --ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNL 139 (694)
T ss_pred --HHHHHHHHHhcccCCCceehHHHHHHHhcccc
Confidence 56678999999999999999999999987533
No 71
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.57 E-value=1.5e-07 Score=43.19 Aligned_cols=28 Identities=54% Similarity=0.875 Sum_probs=25.8
Q ss_pred HHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 125 ELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 125 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
+++.+|+.+|.|++|.|+++||...+++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5788999999999999999999999865
No 72
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.55 E-value=7.5e-07 Score=53.74 Aligned_cols=62 Identities=29% Similarity=0.506 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHh
Q 031260 87 QEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMA 151 (163)
Q Consensus 87 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 151 (163)
......+|...++ ++|.|+.++.+.++...| ++.+.+..+|...|.+++|.++.+||+-.++
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 3778899999985 689999999999999876 8889999999999999999999999976554
No 73
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.52 E-value=3.6e-07 Score=56.85 Aligned_cols=64 Identities=27% Similarity=0.467 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHH
Q 031260 11 QLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALI 75 (163)
Q Consensus 11 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 75 (163)
....+.+-++.+|++++|.|+..+++.+|..+|..++++++..+..-. .+.+|.|+|+.|++.+
T Consensus 86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHI 149 (152)
T ss_pred cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHH
Confidence 345667778999999999999999999999999999999999998776 3567999999998865
No 74
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.52 E-value=2.2e-07 Score=43.49 Aligned_cols=30 Identities=40% Similarity=0.770 Sum_probs=24.4
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH-HhC
Q 031260 89 QLMEVFRSFDRDGNGHITAAELAGSMA-KMG 118 (163)
Q Consensus 89 ~~~~~f~~~D~~~~g~i~~~e~~~~l~-~~~ 118 (163)
+++.+|+.+|++++|+|+.+||..+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367889999999999999999999988 454
No 75
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.52 E-value=2.4e-06 Score=49.94 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchh
Q 031260 9 SEQLKQLKDIFMRFDMDSDGSLTQLELAALLRA-----LGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPD 78 (163)
Q Consensus 9 ~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 78 (163)
+..+..+..+|..+. .+.+.++..||+.++.. +....+...+..++...|.+++|.|+|.||+.++...
T Consensus 4 E~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 4 EHSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456677889999997 45679999999999872 2334567889999999999999999999999998754
No 76
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.45 E-value=1.3e-06 Score=65.09 Aligned_cols=123 Identities=17% Similarity=0.251 Sum_probs=80.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCC------CCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHH
Q 031260 15 LKDIFMRFDMDSDGSLTQLELAALLRALGLK------PTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQE 88 (163)
Q Consensus 15 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 88 (163)
...+|..+|+.++|.++.+++..++...... .+.+-+.. .+.......++|.+|.++++.... +
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~~~r~~ny~~f~Q~lh~~~~-------E 179 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDIRKRHLNYAEFTQFLHEFQL-------E 179 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhHHHHhccHHHHHHHHHHHHH-------H
Confidence 3456667777777777777777766654332 12222333 333333455677777777665432 3
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCC-CceeHHHHH
Q 031260 89 QLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGD-GVISFNEFA 147 (163)
Q Consensus 89 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~-g~i~~~ef~ 147 (163)
.-..+|+..|+.++|.|+.-+|+.++-....++....++..+-......+ .++++..|.
T Consensus 180 ~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 180 HAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred HHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHH
Confidence 46789999999999999999999999887777777777777666543333 356666553
No 77
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.43 E-value=8.9e-06 Score=63.56 Aligned_cols=144 Identities=16% Similarity=0.277 Sum_probs=118.0
Q ss_pred ccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhc
Q 031260 7 VQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLIN 86 (163)
Q Consensus 7 l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~ 86 (163)
........+..+|+..|.+++|.++..+...++..++.......+..+++..+....+.+.+.+|..+.......
T Consensus 130 ~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r----- 204 (746)
T KOG0169|consen 130 QRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR----- 204 (746)
T ss_pred hcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC-----
Confidence 345566788999999999999999999999999999999999999999999977788999999998876543221
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhhccCC----CCceeHHHHHHHHhhccCcc
Q 031260 87 QEQLMEVFRSFDRDGNGHITAAELAGSMAKMG--HPLTYGELSEMMREADTNG----DGVISFNEFATIMAKSAADF 157 (163)
Q Consensus 87 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~----~g~i~~~ef~~~l~~~~~~~ 157 (163)
.++..+|..+-.+ .++++.+++..++...+ ..++......+++.+.... .+.++++.|.++|.+.....
T Consensus 205 -pev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~~~~ 279 (746)
T KOG0169|consen 205 -PEVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPDCNP 279 (746)
T ss_pred -chHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCccCCC
Confidence 3778888888544 89999999999998863 2577888888888885443 35699999999999876554
No 78
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.39 E-value=6.6e-07 Score=41.81 Aligned_cols=30 Identities=47% Similarity=0.754 Sum_probs=25.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH-HhC
Q 031260 14 QLKDIFMRFDMDSDGSLTQLELAALLR-ALG 43 (163)
Q Consensus 14 ~l~~~f~~~D~~~~g~i~~~e~~~~l~-~~~ 43 (163)
+++.+|+.+|.+++|.|+.+||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 565
No 79
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.37 E-value=2.3e-06 Score=63.30 Aligned_cols=54 Identities=31% Similarity=0.488 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 87 QEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 87 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
...+..+|+.+|.+++|.|+.+||.. ++.+|..+|.|++|.|+++||...+...
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 35678999999999999999999842 5789999999999999999999998654
No 80
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.31 E-value=4.7e-06 Score=52.41 Aligned_cols=102 Identities=17% Similarity=0.258 Sum_probs=77.2
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcH--HHHHH
Q 031260 16 KDIFMRFDMDSDGSLTQLELAALLRALGLK-PTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQ--EQLME 92 (163)
Q Consensus 16 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~--~~~~~ 92 (163)
+++...+..++.|.++.++|..++.-+.-. +..--+...|+.+|-++++.|.-++....+....+....... .-+..
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 345667888999999999999988866443 334446778899999999999999988888766554333211 23455
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHh
Q 031260 93 VFRSFDRDGNGHITAAELAGSMAKM 117 (163)
Q Consensus 93 ~f~~~D~~~~g~i~~~e~~~~l~~~ 117 (163)
+..-.|.+|+|.++..+|..++.+.
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhC
Confidence 6677799999999999999988664
No 81
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=1.6e-05 Score=62.30 Aligned_cols=141 Identities=21% Similarity=0.319 Sum_probs=112.4
Q ss_pred cccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchh-------
Q 031260 6 TVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPD------- 78 (163)
Q Consensus 6 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~------- 78 (163)
.++.+++.+-...|..+ ....|+|+-.+-+.++-..|++ ..-+.+||...|.++||.++..||.-++.-.
T Consensus 9 avT~~Er~K~~~qF~~L-kp~~gfitg~qArnfflqS~LP--~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~ 85 (1118)
T KOG1029|consen 9 AVTDEERQKHDAQFGQL-KPGQGFITGDQARNFFLQSGLP--TPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGI 85 (1118)
T ss_pred ccchHHHHHHHHHHhcc-CCCCCccchHhhhhhHHhcCCC--hHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCC
Confidence 47788888888889888 4588999999999998877654 4567788888899999999999998776100
Q ss_pred --------------------------------------------------------------------------------
Q 031260 79 -------------------------------------------------------------------------------- 78 (163)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (163)
T Consensus 86 ~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl 165 (1118)
T KOG1029|consen 86 QLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPL 165 (1118)
T ss_pred cCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred -----hhhH---------h------hhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCC
Q 031260 79 -----ISEQ---------V------LINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGD 138 (163)
Q Consensus 79 -----~~~~---------~------~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 138 (163)
.... . ...+-.++.+|+.+|+...|+++...-+.+|...+ ++...+..|+..-|.|+|
T Consensus 166 ~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~D 243 (1118)
T KOG1029|consen 166 PHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGD 243 (1118)
T ss_pred CCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCC
Confidence 0000 0 00134568899999999999999999999998755 788899999999999999
Q ss_pred CceeHHHHHHHHh
Q 031260 139 GVISFNEFATIMA 151 (163)
Q Consensus 139 g~i~~~ef~~~l~ 151 (163)
|+++-+||+=.+.
T Consensus 244 GkL~~dEfilam~ 256 (1118)
T KOG1029|consen 244 GKLSADEFILAMH 256 (1118)
T ss_pred CcccHHHHHHHHH
Confidence 9999999975543
No 82
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.25 E-value=8.1e-06 Score=42.12 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 105 ITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
++..|++.+|+.+++.+++..+..+|...|.+++|.+.-+||..+++.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999875
No 83
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.25 E-value=6.1e-06 Score=42.55 Aligned_cols=48 Identities=17% Similarity=0.287 Sum_probs=39.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHc
Q 031260 29 SLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALIL 76 (163)
Q Consensus 29 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 76 (163)
.++.+|++.+|+.+++.+++..+..+|+.+|.+++|.+.-+||..++.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 368899999999999999999999999999999999999999988864
No 84
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.21 E-value=2.5e-06 Score=37.66 Aligned_cols=23 Identities=35% Similarity=0.693 Sum_probs=13.6
Q ss_pred HHHHHhhCCCCCCcccHHHHHHH
Q 031260 91 MEVFRSFDRDGNGHITAAELAGS 113 (163)
Q Consensus 91 ~~~f~~~D~~~~g~i~~~e~~~~ 113 (163)
+.+|+.+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34566666666666666666553
No 85
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.15 E-value=1.8e-05 Score=54.20 Aligned_cols=68 Identities=22% Similarity=0.368 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 031260 48 GDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMA 115 (163)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 115 (163)
+..+..+|+..|.+.+++|+-.+..+.+..............-+..|+..|++++|.|+++|++--+.
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 34477899999999999999999999988777666655556667789999999999999999876443
No 86
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.10 E-value=1.6e-05 Score=58.68 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhh-cHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031260 48 GDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLI-NQEQLMEVFRSFDRDGNGHITAAELAGSMAK 116 (163)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~-~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 116 (163)
......+|+..|.+.+|.|+.+||..++.-........ ....+-.+.+.+|-++||.|+.+||.++++-
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 34455666666666666666666666654333221111 2255666666666666666666666666654
No 87
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.07 E-value=4.9e-06 Score=51.09 Aligned_cols=61 Identities=23% Similarity=0.304 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHH
Q 031260 87 QEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATI 149 (163)
Q Consensus 87 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 149 (163)
...+..-|..+|.+++|.|+..|+..+...+ ...+.-+..++...|.|+||.|+..||..+
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 3678888999999999999999998887654 234456889999999999999999999753
No 88
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.06 E-value=1.1e-05 Score=57.37 Aligned_cols=103 Identities=15% Similarity=0.126 Sum_probs=83.5
Q ss_pred HHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Q 031260 49 DQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSE 128 (163)
Q Consensus 49 ~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~ 128 (163)
.-...+|..+|.+.+|.++|.+....+.-.+.+... ..-++.+|+.|+.+.||+++..+|.-+|+... .+..=.+-.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t--~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l-gv~~l~v~~ 335 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVT--PVIIQYAFKRFSVAEDGISGEHILSLILQVVL-GVEVLRVPV 335 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCc--HHHHHHHHHhcccccccccchHHHHHHHHHhc-Ccceeeccc
Confidence 346778888999999999999998877666554333 27889999999999999999999988888742 244445778
Q ss_pred HHHhhccCCCCceeHHHHHHHHhhcc
Q 031260 129 MMREADTNGDGVISFNEFATIMAKSA 154 (163)
Q Consensus 129 ~~~~~d~~~~g~i~~~ef~~~l~~~~ 154 (163)
+|..++...+|+|++.+|.++....+
T Consensus 336 lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 336 LFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred cchhhhcccCcceeHHHHHHHHHhCc
Confidence 89999998899999999999987663
No 89
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=98.05 E-value=3.3e-05 Score=44.75 Aligned_cols=69 Identities=17% Similarity=0.392 Sum_probs=55.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHh-CC-CCCHHHHHHHHHhhccC----CCCceeHHHHHHHHhhccCccc
Q 031260 89 QLMEVFRSFDRDGNGHITAAELAGSMAKM-GH-PLTYGELSEMMREADTN----GDGVISFNEFATIMAKSAADFL 158 (163)
Q Consensus 89 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~-~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~~~~~~~ 158 (163)
++..+|..+.. +.+.+|.++|..+|... +. .++...+..++..+.++ ..+.+++++|..+|.+.....+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N~~~ 75 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDENSIF 75 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTCBSS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcCCCC
Confidence 36788999955 78999999999999774 43 46899999999998655 4689999999999988765443
No 90
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.05 E-value=1.1e-05 Score=35.63 Aligned_cols=25 Identities=44% Similarity=0.838 Sum_probs=22.2
Q ss_pred HHHHHHhhccCCCCceeHHHHHHHH
Q 031260 126 LSEMMREADTNGDGVISFNEFATIM 150 (163)
Q Consensus 126 ~~~~~~~~d~~~~g~i~~~ef~~~l 150 (163)
++.+|+.+|.|++|.|+++||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 91
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.02 E-value=3.5e-05 Score=58.02 Aligned_cols=74 Identities=27% Similarity=0.501 Sum_probs=65.8
Q ss_pred cccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHHHhhCCCCCCceeHhHHHHHHchh
Q 031260 4 METVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLK---PTGDQLHILLADMDSNGNGLVEFDELVALILPD 78 (163)
Q Consensus 4 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 78 (163)
.++++.++.+.++..|...| +++|+++..++..++...+.. ...++++.+....+.+.+|.|+|++|+..+...
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 45799999999999999999 999999999999999977653 358889999999999999999999999977544
No 92
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.97 E-value=0.00017 Score=55.33 Aligned_cols=141 Identities=22% Similarity=0.322 Sum_probs=96.2
Q ss_pred ccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH-HhCCCCCHHHHHHHHHhhCC---CC--CCceeHhHHHHHHchh
Q 031260 5 ETVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLR-ALGLKPTGDQLHILLADMDS---NG--NGLVEFDELVALILPD 78 (163)
Q Consensus 5 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~-~~~~~~~~~~~~~~~~~~~~---~~--~~~i~~~ef~~~~~~~ 78 (163)
+.+.+.-++.|.++|...|.|++|.++-.|+..+=. .++.++...++..+-...+. ++ ...++..-|+.+....
T Consensus 187 qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lf 266 (625)
T KOG1707|consen 187 QELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLF 266 (625)
T ss_pred ccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHH
Confidence 457888999999999999999999999999877655 46667777776665555432 21 2335555565544221
Q ss_pred hhh---------------------------------------HhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC
Q 031260 79 ISE---------------------------------------QVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGH 119 (163)
Q Consensus 79 ~~~---------------------------------------~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 119 (163)
... -...-.+.+..+|..||.++||.++-.|+..++..++.
T Consensus 267 iergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 267 IERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred HHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 100 00011466788999999999999999999999998754
Q ss_pred CC----CHHHHHHHHHhhccCCCCceeHHHHHHHHh
Q 031260 120 PL----TYGELSEMMREADTNGDGVISFNEFATIMA 151 (163)
Q Consensus 120 ~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 151 (163)
.. ...+ .--.+..|.++|+.|+..+.
T Consensus 347 ~pW~~~~~~~------~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 347 SPWTSSPYKD------STVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred CCCCCCcccc------cceecccceeehhhHHHHHH
Confidence 32 1111 01123678999999988775
No 93
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.96 E-value=2.8e-05 Score=64.97 Aligned_cols=68 Identities=22% Similarity=0.506 Sum_probs=60.2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCC-------HHHHHHHHHhhccCCCCceeHHHHHHHHhhccC
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLT-------YGELSEMMREADTNGDGVISFNEFATIMAKSAA 155 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 155 (163)
.++.-+|+.||++.+|.++..+|+.+|+.+|..++ ++++..++...||+.+|.|+.++|+.+|-+...
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ET 2327 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKET 2327 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccc
Confidence 35667899999999999999999999999988662 347999999999999999999999999987654
No 94
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.87 E-value=9.8e-05 Score=54.86 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=51.0
Q ss_pred hCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031260 42 LGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAK 116 (163)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 116 (163)
.|.......+..+|+.+|.+++|.|+.+||.. ...+|..+|.|++|.|+.+||...+..
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~----------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG----------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH----------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 34566678889999999999999999999942 356899999999999999999998865
No 95
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.86 E-value=6.7e-06 Score=50.50 Aligned_cols=61 Identities=25% Similarity=0.370 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHH
Q 031260 46 PTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELA 111 (163)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~ 111 (163)
.-...+.-.|..+|.+++|.++-.|+..+.....+.. .-++..|+..|.|+||.|+..|+.
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e-----~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPE-----HCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTG-----GGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhH-----HHHHHHHHHcCCCCCCCCCHHHHc
Confidence 3345566667777777777777777666554332111 345666677777777777777664
No 96
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.80 E-value=0.00029 Score=52.46 Aligned_cols=132 Identities=19% Similarity=0.298 Sum_probs=88.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHH--HHHhCC------------CCCHHHHHHH---HHhhCCCCCCceeHhHHHHHHc
Q 031260 14 QLKDIFMRFDMDSDGSLTQLELAAL--LRALGL------------KPTGDQLHIL---LADMDSNGNGLVEFDELVALIL 76 (163)
Q Consensus 14 ~l~~~f~~~D~~~~g~i~~~e~~~~--l~~~~~------------~~~~~~~~~~---~~~~~~~~~~~i~~~ef~~~~~ 76 (163)
.+.++|..+++..+|.|+..++.+. +..+.. -.+-+....+ |...|++-+|.|+-++......
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 3688899999999999999998753 322211 1111222222 5556777777777777665544
Q ss_pred hhhhhHhhhcHHHHHHHHHh----hCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHh
Q 031260 77 PDISEQVLINQEQLMEVFRS----FDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMA 151 (163)
Q Consensus 77 ~~~~~~~~~~~~~~~~~f~~----~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 151 (163)
.... ..-+.++|.. +-...+|.++.++|..++-+.-..-++.-++.+|+-+|.+++|.|+..|.--++.
T Consensus 306 ~tlt------~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fye 378 (493)
T KOG2562|consen 306 HTLT------ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYE 378 (493)
T ss_pred cchh------hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHH
Confidence 3332 2456777772 2244578899999988888877777778888899999999999888877655443
No 97
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.64 E-value=0.00032 Score=53.06 Aligned_cols=64 Identities=33% Similarity=0.564 Sum_probs=56.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC---CHHHHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPL---TYGELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
..+...|...| +++|+|+..++..++...+... ..++++.++...++|.+|+|++++|+..+..
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 67888999999 9999999999999999876543 4788999999999999999999999996654
No 98
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.58 E-value=0.0008 Score=43.92 Aligned_cols=136 Identities=17% Similarity=0.206 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC---CCCCCceeHhHH---HHHHchhh------
Q 031260 12 LKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMD---SNGNGLVEFDEL---VALILPDI------ 79 (163)
Q Consensus 12 ~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~ef---~~~~~~~~------ 79 (163)
...|++...-+|+|++|.|.+-|-.+.++.+|..+--.-+..++-... ....+.+.-.-| +.-++.-.
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 456788888999999999999999999999998764443333221110 011121111111 11111100
Q ss_pred ----hhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC-------CCCHHHHHHHHHhhccCCCCceeHHHHHH
Q 031260 80 ----SEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGH-------PLTYGELSEMMREADTNGDGVISFNEFAT 148 (163)
Q Consensus 80 ----~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-------~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 148 (163)
..+-. .+.+..+|..+++.+.+.+|..|+.++++.-.. ..+.-|-..++... .+++|.+..++--.
T Consensus 86 ~YD~eGrFv--p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~ 162 (174)
T PF05042_consen 86 AYDTEGRFV--PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRG 162 (174)
T ss_pred ccccCCcCC--HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhh
Confidence 01111 388999999999999999999999999987322 22344555666655 56899999888766
Q ss_pred HH
Q 031260 149 IM 150 (163)
Q Consensus 149 ~l 150 (163)
++
T Consensus 163 vY 164 (174)
T PF05042_consen 163 VY 164 (174)
T ss_pred hc
Confidence 55
No 99
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.00028 Score=42.71 Aligned_cols=60 Identities=33% Similarity=0.603 Sum_probs=45.5
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHh------CC---CC-CHHH----HHHHHHhhccCCCCceeHHHHHHH
Q 031260 90 LMEVFRSFDRDGNGHITAAELAGSMAKM------GH---PL-TYGE----LSEMMREADTNGDGVISFNEFATI 149 (163)
Q Consensus 90 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~------~~---~~-~~~~----~~~~~~~~d~~~~g~i~~~ef~~~ 149 (163)
-..-|+..|-|++|.++.-|+..++.-. |. ++ ++.+ ++.+++.-|.|+||.|+|-||++-
T Consensus 69 qfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 69 QFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3467999999999999999998888542 22 22 4445 455566668899999999999864
No 100
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.00083 Score=50.67 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=64.5
Q ss_pred cccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchh
Q 031260 6 TVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPD 78 (163)
Q Consensus 6 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 78 (163)
++++++++.+-..|+..-++.+|+|+-.--++++.+. .++..|+..||..+|.+.+|.+++.||+.+++-.
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 4788999999999999999999999999888888876 5778999999999999999999999999998644
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.33 E-value=0.00038 Score=30.84 Aligned_cols=25 Identities=40% Similarity=0.724 Sum_probs=13.8
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHH
Q 031260 91 MEVFRSFDRDGNGHITAAELAGSMA 115 (163)
Q Consensus 91 ~~~f~~~D~~~~g~i~~~e~~~~l~ 115 (163)
..+|+.+|.+++|.|+..+|..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455555555555555555555554
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.17 E-value=0.00071 Score=29.87 Aligned_cols=27 Identities=44% Similarity=0.672 Sum_probs=20.6
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031260 15 LKDIFMRFDMDSDGSLTQLELAALLRA 41 (163)
Q Consensus 15 l~~~f~~~D~~~~g~i~~~e~~~~l~~ 41 (163)
+..+|..+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456778888888888888888777654
No 103
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.12 E-value=0.0017 Score=46.52 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=80.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHH
Q 031260 13 KQLKDIFMRFDMDSDGSLTQLELAALLRA-LGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLM 91 (163)
Q Consensus 13 ~~l~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 91 (163)
..+...|..+|.+++|.++..+--..+.- .|...+...++..|..++...+|.++-.+|.-++.....-.. -.+.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~----l~v~ 334 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEV----LRVP 334 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcce----eecc
Confidence 67888999999999999998887666654 355677778899999999999999988887766653332211 3567
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHh
Q 031260 92 EVFRSFDRDGNGHITAAELAGSMAKM 117 (163)
Q Consensus 92 ~~f~~~D~~~~g~i~~~e~~~~l~~~ 117 (163)
..|..+++..+|.|+.++|+.+....
T Consensus 335 ~lf~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred ccchhhhcccCcceeHHHHHHHHHhC
Confidence 78999999999999999999998664
No 104
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.88 E-value=0.023 Score=46.28 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=78.2
Q ss_pred cccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCH-----HHHHHHHHhhCCCCCCceeHhHHHHHHchhhh
Q 031260 6 TVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTG-----DQLHILLADMDSNGNGLVEFDELVALILPDIS 80 (163)
Q Consensus 6 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~ 80 (163)
..++.....+...|..++....|.++.+++..++-.+|+.... +++..+....+...-|.+++.+|.+.+.+...
T Consensus 740 ~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 740 GTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred chhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 3456677789999999999999999999999999999987664 33444555555555588999999999876544
Q ss_pred hHhhhcHHHHHHHHHhhCCCCCCcccHHHHHH
Q 031260 81 EQVLINQEQLMEVFRSFDRDGNGHITAAELAG 112 (163)
Q Consensus 81 ~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 112 (163)
.... ...+..+|+.+-+++. +|..+++..
T Consensus 820 ~l~~--~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 820 DLDT--ELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhcH--HHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 3222 2667788888865554 788888777
No 105
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.016 Score=35.33 Aligned_cols=69 Identities=25% Similarity=0.421 Sum_probs=44.5
Q ss_pred cccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC------C---C-CCHHHH----HHHHHhhCCCCCCceeHh
Q 031260 4 METVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALG------L---K-PTGDQL----HILLADMDSNGNGLVEFD 69 (163)
Q Consensus 4 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~------~---~-~~~~~~----~~~~~~~~~~~~~~i~~~ 69 (163)
..++++++.+ -..|...|-++++.++--|+.+++.... . + +++.+. ..+++.-|.+++|.|+|-
T Consensus 60 ~a~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYg 137 (144)
T KOG4065|consen 60 VAKMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYG 137 (144)
T ss_pred hhhCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHH
Confidence 3456666554 3568888999999999999988887432 1 1 223443 334444466777888887
Q ss_pred HHHHH
Q 031260 70 ELVAL 74 (163)
Q Consensus 70 ef~~~ 74 (163)
||+..
T Consensus 138 EflK~ 142 (144)
T KOG4065|consen 138 EFLKR 142 (144)
T ss_pred HHHhh
Confidence 77653
No 106
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.70 E-value=0.0082 Score=34.62 Aligned_cols=61 Identities=16% Similarity=0.374 Sum_probs=37.9
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhCCC----CCCceeHhHHHHHHc
Q 031260 15 LKDIFMRFDMDSDGSLTQLELAALLRALGL--KPTGDQLHILLADMDSN----GNGLVEFDELVALIL 76 (163)
Q Consensus 15 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~~~----~~~~i~~~ef~~~~~ 76 (163)
+..+|..+.. +.+.|+.++|.+.|+.-.. ..+..++..++..+..+ ..+.++++.|..++.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 4566777744 6677777777777764432 34667777776666432 245666666666654
No 107
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.69 E-value=0.069 Score=43.60 Aligned_cols=123 Identities=14% Similarity=0.220 Sum_probs=89.4
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCC--CCCCc-----eeHhHHHHHHchhhhhHhhhcHHHHHHHHH
Q 031260 23 DMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDS--NGNGL-----VEFDELVALILPDISEQVLINQEQLMEVFR 95 (163)
Q Consensus 23 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~-----i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~ 95 (163)
-.+..|+|+.+.+.+++.+- ..+.-+......+.- +.... .+++.|..++...+.. .++..+|.
T Consensus 158 qvn~~grip~knI~k~F~~~---k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR------~eie~iF~ 228 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSAD---KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPR------PEIEEIFR 228 (1189)
T ss_pred cccccccccHHHHHHHhhcC---CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCc------hhHHHHHH
Confidence 46788999999988888653 223455555555432 22233 4555666665544332 57899999
Q ss_pred hhCCCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHHHhhccCCC----CceeHHHHHHHHhhcc
Q 031260 96 SFDRDGNGHITAAELAGSMAKM----------GHPLTYGELSEMMREADTNGD----GVISFNEFATIMAKSA 154 (163)
Q Consensus 96 ~~D~~~~g~i~~~e~~~~l~~~----------~~~~~~~~~~~~~~~~d~~~~----g~i~~~ef~~~l~~~~ 154 (163)
.+..++.-++|.++|..+|..- -..+.+..+..+++.+.++++ |.++-+.|++++....
T Consensus 229 ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gdE 301 (1189)
T KOG1265|consen 229 KISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGDE 301 (1189)
T ss_pred HhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCCc
Confidence 9988888999999999999753 234678889999999988864 8999999999999843
No 108
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.0051 Score=50.42 Aligned_cols=145 Identities=20% Similarity=0.269 Sum_probs=113.5
Q ss_pred cccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhh---
Q 031260 4 METVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDIS--- 80 (163)
Q Consensus 4 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~--- 80 (163)
+..++.++...+..+|..+.++ +|.++......++..- .++..-..++|..+|.+.+|.++..+|...++....
T Consensus 120 ~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~ 196 (847)
T KOG0998|consen 120 VPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLN 196 (847)
T ss_pred CCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhccccccccccccCCCChhhhhhhhhHHHHHhh
Confidence 3457888999999999999775 8899888888887655 455666778999999999999999999776632100
Q ss_pred -------------------------------------------------------------------------------h
Q 031260 81 -------------------------------------------------------------------------------E 81 (163)
Q Consensus 81 -------------------------------------------------------------------------------~ 81 (163)
.
T Consensus 197 ~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~ 276 (847)
T KOG0998|consen 197 GNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPK 276 (847)
T ss_pred cccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcc
Confidence 0
Q ss_pred HhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 82 QVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 82 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
........+..+|...|.+.+|.|+..+....+... .++...+..+|...+..+.|.+++.+|.-.+...
T Consensus 277 vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~--gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 277 VSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPF--GLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred cChHHHHHHHHHHHhccccCCCcccccccccccccC--CCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 001113456778999999999999999999999884 4888899999999999999999999887666543
No 109
>PLN02952 phosphoinositide phospholipase C
Probab=96.23 E-value=0.057 Score=42.62 Aligned_cols=90 Identities=14% Similarity=0.186 Sum_probs=60.9
Q ss_pred CCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhcc----
Q 031260 62 GNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGH--PLTYGELSEMMREADT---- 135 (163)
Q Consensus 62 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~---- 135 (163)
+.|.++|++|..++..... .......++..+|..+-. +.+.++.++|..+|..... ..+.+.+..++..+-.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~-~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~ 90 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKI-TEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHH 90 (599)
T ss_pred cCCCcCHHHHHHHHHHhcc-ccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccc
Confidence 3478999999776654321 111233788999999954 4478999999999988543 3566667777654411
Q ss_pred ---CCCCceeHHHHHHHHhhc
Q 031260 136 ---NGDGVISFNEFATIMAKS 153 (163)
Q Consensus 136 ---~~~g~i~~~ef~~~l~~~ 153 (163)
...+.+++++|..+|...
T Consensus 91 ~~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 91 VTRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred cccccccCcCHHHHHHHHcCc
Confidence 123468999999999854
No 110
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.20 E-value=0.063 Score=34.91 Aligned_cols=63 Identities=19% Similarity=0.372 Sum_probs=47.2
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 91 MEVFRSFDRDGNGHITAAELAGSMAKMGH---PLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 91 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
-..|..|-+.+...++...|..+|+.++. .++...++.+|..+-..+...|+|++|...|...
T Consensus 5 F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 5 FKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 33444445566678999999999999754 5889999999999866666679999999988653
No 111
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.17 E-value=0.077 Score=31.11 Aligned_cols=69 Identities=13% Similarity=0.196 Sum_probs=46.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHh-------CC----CCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhccCc
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKM-------GH----PLTYGELSEMMREADTNGDGVISFNEFATIMAKSAAD 156 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~~----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 156 (163)
+.++.+|+.+ .|.+|.++...|..+|..+ |. .-.+..++.+|... .....|+.++|+..++..+.-
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq~ 79 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQS 79 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--TT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCCe
Confidence 6778899999 6889999999999988753 22 12677788899886 345689999999999988665
Q ss_pred ccc
Q 031260 157 FLG 159 (163)
Q Consensus 157 ~~~ 159 (163)
..+
T Consensus 80 lVW 82 (90)
T PF09069_consen 80 LVW 82 (90)
T ss_dssp TTH
T ss_pred eeH
Confidence 443
No 112
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=96.16 E-value=0.011 Score=50.25 Aligned_cols=63 Identities=19% Similarity=0.441 Sum_probs=54.9
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhccC
Q 031260 92 EVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKSAA 155 (163)
Q Consensus 92 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 155 (163)
..|+.||++|.|.|+..+|...+.... +.++.+++-++.-...|.+..++|++|++-++.+..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfhepak 4123 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEPAK 4123 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhcCchh
Confidence 357888999999999999999997654 468899999999999999999999999999987643
No 113
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.12 E-value=0.014 Score=42.31 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 87 QEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 87 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
+..+-..|+.+|.+.||.++..|++.+-. .-.+.-+..+|...|...||.|+-.||...+.+.
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 46788899999999999999999888763 3456678899999999999999999999888654
No 114
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.05 E-value=0.13 Score=33.39 Aligned_cols=63 Identities=16% Similarity=0.385 Sum_probs=47.0
Q ss_pred HHHHHhh---CCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchh
Q 031260 16 KDIFMRF---DMDSDGSLTQLELAALLRALGL---KPTGDQLHILLADMDSNGNGLVEFDELVALILPD 78 (163)
Q Consensus 16 ~~~f~~~---D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 78 (163)
+.+|..+ -..+...|+-..|.++++..++ .++..++.-+|..+-..+...|+|++|..++...
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 3445444 4556679999999999997654 6889999999999865556779999999988643
No 115
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.026 Score=42.98 Aligned_cols=63 Identities=25% Similarity=0.425 Sum_probs=55.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
+-+..-|+.+.+|-.|+|+...-++++.... ++-.|+..||+..|.+.||-+++.||+..++-
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 3445678999999999999999999998754 67789999999999999999999999998763
No 116
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=95.90 E-value=0.0053 Score=34.07 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=38.4
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCC-------CCceeHHHHHHH
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNG-------DGVISFNEFATI 149 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~-------~g~i~~~ef~~~ 149 (163)
+++..+|+.+ .++.++||.++|++.|.. +.++-+...+.+.. .|.++|..|++-
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 7899999999 788899999999998732 23355555543222 267999988753
No 117
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.81 E-value=0.084 Score=34.72 Aligned_cols=40 Identities=15% Similarity=0.320 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc--cCccccc
Q 031260 121 LTYGELSEMMREADTNGDGVISFNEFATIMAKS--AADFLGL 160 (163)
Q Consensus 121 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~--~~~~~~~ 160 (163)
..++..+++|..++....+.+++.|..+.++.+ ..+++|+
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW 134 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGW 134 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchh
Confidence 457778999999988777899999999999874 3455553
No 118
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.68 E-value=0.042 Score=42.65 Aligned_cols=76 Identities=24% Similarity=0.303 Sum_probs=68.7
Q ss_pred cccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhh
Q 031260 6 TVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISE 81 (163)
Q Consensus 6 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 81 (163)
.+++++....+..|..+|.++.|+++..+..+++...+...+.....++.+..+....|.+...+|.++.......
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g 661 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNG 661 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999999999989999999999999988888999999999887655443
No 119
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=0.035 Score=44.51 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=58.8
Q ss_pred ccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHc
Q 031260 7 VQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALIL 76 (163)
Q Consensus 7 l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 76 (163)
++.....++.++|..+|+..+|+++-.+-..+|...+ ++...+..||..-|.++||.++-+||+-.++
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 4556677899999999999999999999998888774 5567788999999999999999999987764
No 120
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.95 E-value=0.43 Score=38.43 Aligned_cols=96 Identities=16% Similarity=0.280 Sum_probs=69.3
Q ss_pred HHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031260 51 LHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMM 130 (163)
Q Consensus 51 ~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 130 (163)
+..+|...|++++|.+++.+-..++...-..... ..++..|+..+..++|.+...++.++....+... ++..+|
T Consensus 138 i~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~---~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f 211 (746)
T KOG0169|consen 138 IHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSE---SKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLF 211 (746)
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHhhhH---HHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHH
Confidence 6778889999999999999887776544333222 5667788888888899999999999888765332 667777
Q ss_pred HhhccCCCCceeHHHHHHHHhhc
Q 031260 131 READTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 131 ~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
..+..+ .+.++.+++..++...
T Consensus 212 ~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 212 VQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred HHHhCC-CCccCHHHHHHHHHHh
Confidence 776433 5566766666666543
No 121
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.92 E-value=0.058 Score=42.39 Aligned_cols=56 Identities=23% Similarity=0.354 Sum_probs=31.6
Q ss_pred HHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHH
Q 031260 51 LHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAEL 110 (163)
Q Consensus 51 ~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 110 (163)
..++|+..|.+.+|.++|.+++..+......... +.+.-+|+.+|++++ ..+.++.
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~---ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSILKAGDAL---EKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHH---HHHHHHHhhccCCcc-ccccccc
Confidence 4555555665556666666666555554444333 455555666666665 5555555
No 122
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.80 E-value=0.085 Score=41.51 Aligned_cols=77 Identities=14% Similarity=0.233 Sum_probs=61.1
Q ss_pred eeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHH
Q 031260 66 VEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNE 145 (163)
Q Consensus 66 i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 145 (163)
++|..|...+....+-. .+...+.++|..+|.+++|.|+..++..-|..+...-.-+.+..+|..++++++ ..+.++
T Consensus 535 i~~~~f~~~f~~l~pw~--~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWA--VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHhhHHHHhhccCchh--HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 66777777776555444 344778899999999999999999999999887666677788999999988887 655554
No 123
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.59 E-value=0.031 Score=40.36 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=27.7
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHc
Q 031260 18 IFMRFDMDSDGSLTQLELAALLRAL-GLKPTGDQLHILLADMDSNGNGLVEFDELVALIL 76 (163)
Q Consensus 18 ~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 76 (163)
.|..+|.|+++.|...|.+.+-+-+ ......+-...++.++|.+++..|++.|+...+.
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 3455555555555555533322211 1123334445555555555555555555555543
No 124
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.40 E-value=0.14 Score=39.85 Aligned_cols=65 Identities=22% Similarity=0.277 Sum_probs=58.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 89 QLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 89 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
..+.-|..+|.++.|+++.++...+|+..+...++..+..+.+..+.+.+|.+...+|.+++...
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 34567889999999999999999999998888999999999999999999999999999988753
No 125
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.11 E-value=0.14 Score=37.38 Aligned_cols=98 Identities=24% Similarity=0.280 Sum_probs=74.4
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHH
Q 031260 14 QLKDIFMRFDMDSDGSLTQLELAALLRALG---LKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQL 90 (163)
Q Consensus 14 ~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 90 (163)
+|...|..+=.+.++......+...-..+. .++=..++.-||...|.+.++.++..|...+-. ..++.-+
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l-------dknE~Ci 284 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL-------DKNEACI 284 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhc-------cCchhHH
Confidence 567778777666676666666655543332 234467899999999999999999999876643 2233678
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhC
Q 031260 91 MEVFRSFDRDGNGHITAAELAGSMAKMG 118 (163)
Q Consensus 91 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 118 (163)
+..|+..|...||.|+..|+=..+...+
T Consensus 285 kpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 285 KPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred HHHHhhhcccccCccccchhhhhhccCC
Confidence 9999999999999999999988887765
No 126
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=93.33 E-value=0.2 Score=43.32 Aligned_cols=59 Identities=15% Similarity=0.375 Sum_probs=48.5
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHch
Q 031260 18 IFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILP 77 (163)
Q Consensus 18 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 77 (163)
.|+.+|+++.|.|+..+|.+++..- ...+..++.-+.+-...+.+..++|++|+.-++.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 3577899999999999999999753 2456778888888777788888999999998854
No 127
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.27 E-value=0.62 Score=38.18 Aligned_cols=148 Identities=14% Similarity=0.141 Sum_probs=89.4
Q ss_pred ccHHHHH-HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHH-HHHHhhCCCCCCceeHhHHHHHHchhhhhHhh
Q 031260 7 VQSEQLK-QLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLH-ILLADMDSNGNGLVEFDELVALILPDISEQVL 84 (163)
Q Consensus 7 l~~~~~~-~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~ 84 (163)
..+-.+. .+++.+...|......|+..+++..+...++..+..-.. +-+..-.. ..+.++|++|..+....+-....
T Consensus 137 ~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~-~k~dlsf~~f~~ly~~lmfs~~~ 215 (1267)
T KOG1264|consen 137 PTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGA-RKDDLSFEQFHLLYKKLMFSQQK 215 (1267)
T ss_pred CChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhh-ccccccHHHHHHHHHHHhhccch
Confidence 3444444 467778888877777899999999998887766554432 33333322 34669999999887766544333
Q ss_pred hcHHHHHHHHHhh--CCCCCCcccHHHHHHHHHHhCCCCCHH---HHHHHHHhhccC-----CCCceeHHHHHHHHhhcc
Q 031260 85 INQEQLMEVFRSF--DRDGNGHITAAELAGSMAKMGHPLTYG---ELSEMMREADTN-----GDGVISFNEFATIMAKSA 154 (163)
Q Consensus 85 ~~~~~~~~~f~~~--D~~~~g~i~~~e~~~~l~~~~~~~~~~---~~~~~~~~~d~~-----~~g~i~~~ef~~~l~~~~ 154 (163)
.........|-.= +...--.++..+|.++|.......... .++.+...|-.| ..-.++..||+.+|-+..
T Consensus 216 a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSre 295 (1267)
T KOG1264|consen 216 AILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSRE 295 (1267)
T ss_pred hhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhcc
Confidence 2111222222111 222235799999999997643332222 345555554222 233799999999998764
Q ss_pred C
Q 031260 155 A 155 (163)
Q Consensus 155 ~ 155 (163)
.
T Consensus 296 N 296 (1267)
T KOG1264|consen 296 N 296 (1267)
T ss_pred c
Confidence 3
No 128
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=93.24 E-value=0.12 Score=37.51 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=48.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHH---HHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 89 QLMEVFRSFDRDGNGHITAAELA---GSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 89 ~~~~~f~~~D~~~~g~i~~~e~~---~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
.+..-|+.+|+|.++.|.+.|++ .++.... -...-...+++..|.|+|..|+++|+...|...
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 45667999999999999999854 4443322 233456778888899999999999999988654
No 129
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=0.18 Score=41.74 Aligned_cols=138 Identities=22% Similarity=0.272 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhh---------
Q 031260 10 EQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDIS--------- 80 (163)
Q Consensus 10 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~--------- 80 (163)
.....+...|+..|+.++|.|+..+-..++...| +..+..-++|...+..+.|.++...|...+.....
T Consensus 8 ~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~ 85 (847)
T KOG0998|consen 8 PGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSA 85 (847)
T ss_pred CccchHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhhhhhcccCcCc
Confidence 3446778899999999999999999999988765 55777888999999988899998888776632100
Q ss_pred ------------------------------------hHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHH
Q 031260 81 ------------------------------------EQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYG 124 (163)
Q Consensus 81 ------------------------------------~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~ 124 (163)
............+|..+.+. .|.++.+..+-++..- .++..
T Consensus 86 ~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~ 162 (847)
T KOG0998|consen 86 KKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSD 162 (847)
T ss_pred cccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChh
Confidence 00000123455567777655 7999999999988764 46777
Q ss_pred HHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 125 ELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 125 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
.+..++...|.+.+|.++..+|.-.++-
T Consensus 163 ~l~~iw~l~d~d~~g~Ld~~ef~~am~l 190 (847)
T KOG0998|consen 163 VLGRIWELSDIDKDGNLDRDEFAVAMHL 190 (847)
T ss_pred hhccccccccccccCCCChhhhhhhhhH
Confidence 8889999999999999999999776654
No 130
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=92.83 E-value=0.12 Score=31.55 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 120 PLTYGELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 120 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
.+++++.+.++..+-.|..|+|.|.+|+.-+..
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 378899999999999999999999999998874
No 131
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=92.02 E-value=0.25 Score=35.64 Aligned_cols=62 Identities=21% Similarity=0.343 Sum_probs=44.2
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHH-----hCCCCCHHH-----------HHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 91 MEVFRSFDRDGNGHITAAELAGSMAK-----MGHPLTYGE-----------LSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 91 ~~~f~~~D~~~~g~i~~~e~~~~l~~-----~~~~~~~~~-----------~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
+..|...|.+++|+++..++..++.. +...-.+.. -+.++...|.|.|--|+.++|+.--.+
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 34567778999999999999988754 121111111 245677889999999999999876543
No 132
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=91.62 E-value=0.65 Score=36.55 Aligned_cols=67 Identities=22% Similarity=0.327 Sum_probs=52.3
Q ss_pred cccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC----CHHHHHHHHHhhCCCCCCceeHhHHHHHHchh
Q 031260 6 TVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKP----TGDQLHILLADMDSNGNGLVEFDELVALILPD 78 (163)
Q Consensus 6 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 78 (163)
.+++.-++.+..+|..+|.++||-++..|+..++......+ ...+.- ..+..|.++|.-|+..+...
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t------~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST------VKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc------eecccceeehhhHHHHHHHH
Confidence 47889999999999999999999999999999999876544 111111 12357899999998888644
No 133
>PLN02952 phosphoinositide phospholipase C
Probab=91.38 E-value=2.4 Score=33.90 Aligned_cols=88 Identities=10% Similarity=0.138 Sum_probs=59.0
Q ss_pred CCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhh----C-
Q 031260 26 SDGSLTQLELAALLRALGL--KPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSF----D- 98 (163)
Q Consensus 26 ~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~----D- 98 (163)
+.|.++.++|..+.+.+.. ..++.++..+|..+..+ .+.++.++|..++...-.... ........++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~-~~~~~~~~i~~~~~~~~~~ 90 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELD-CTLAEAQRIVEEVINRRHH 90 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcC-CCHHHHHHHHHHHHhhccc
Confidence 4689999999888887643 34789999999999654 367999999999865543221 1223333443322 1
Q ss_pred --CCCCCcccHHHHHHHHH
Q 031260 99 --RDGNGHITAAELAGSMA 115 (163)
Q Consensus 99 --~~~~g~i~~~e~~~~l~ 115 (163)
..+.+.++.+.|..+|.
T Consensus 91 ~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 91 VTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred cccccccCcCHHHHHHHHc
Confidence 12335689999988885
No 134
>PLN02228 Phosphoinositide phospholipase C
Probab=91.23 E-value=1.7 Score=34.53 Aligned_cols=64 Identities=14% Similarity=0.340 Sum_probs=45.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhccC----CCCceeHHHHHHHHhhc
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKMGH--PLTYGELSEMMREADTN----GDGVISFNEFATIMAKS 153 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~~ 153 (163)
.++..+|..+.. ++.++.++|..+|..... ..+.+.+..++..+... ..|.++.+.|..+|.+.
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 678888888853 357888888888877532 24556677888877543 23578999999998765
No 135
>PLN02222 phosphoinositide phospholipase C 2
Probab=91.18 E-value=1.5 Score=34.83 Aligned_cols=65 Identities=12% Similarity=0.255 Sum_probs=49.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhcc-CCCCceeHHHHHHHHhhcc
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKMGH--PLTYGELSEMMREADT-NGDGVISFNEFATIMAKSA 154 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l~~~~ 154 (163)
.++..+|..+.. ++.++.++|..+|..... ..+.+.+..++..+.. -..+.++++.|..+|.+..
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~~ 92 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGDN 92 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCCC
Confidence 688899998853 479999999999988543 3467778888887632 2356799999999998753
No 136
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=90.17 E-value=1.5 Score=31.81 Aligned_cols=85 Identities=19% Similarity=0.273 Sum_probs=52.3
Q ss_pred cHHHHHHHHH-HhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhh-------------HhhhcHHHH-HHHHH
Q 031260 31 TQLELAALLR-ALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISE-------------QVLINQEQL-MEVFR 95 (163)
Q Consensus 31 ~~~e~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~-------------~~~~~~~~~-~~~f~ 95 (163)
+..++..+-. .-|+.++.-.-...|...|.+++|.++-.+.-.++...+.. +... .-.+ ..+.+
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEE-rlRMREHVMk 303 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEE-RLRMREHVMK 303 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HHHHHHHHHH
Confidence 4566665554 34556666666677777777777777776666666433211 0000 0112 24677
Q ss_pred hhCCCCCCcccHHHHHHHHHH
Q 031260 96 SFDRDGNGHITAAELAGSMAK 116 (163)
Q Consensus 96 ~~D~~~~g~i~~~e~~~~l~~ 116 (163)
.+|.+.+..||.++|...-..
T Consensus 304 ~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 304 QVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred hcccchhhhhhHHHHHhhhhh
Confidence 889999999999988776654
No 137
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=90.04 E-value=1.2 Score=36.83 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=53.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHH--HHHHHHHh---hccCCCCceeHHHHHHHHhhc
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYG--ELSEMMRE---ADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~--~~~~~~~~---~d~~~~g~i~~~ef~~~l~~~ 153 (163)
.+++..|+.+++...|..+.+++...+..+|....++ -+..+|+. .+++..|.+++.+|...|.+.
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 5788999999999999999999999999999876642 24444444 356566899999999999765
No 138
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=89.89 E-value=2.8 Score=24.97 Aligned_cols=82 Identities=20% Similarity=0.221 Sum_probs=51.0
Q ss_pred CCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCC
Q 031260 26 SDGSLTQLELAALLRALG--LKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNG 103 (163)
Q Consensus 26 ~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g 103 (163)
-||.++..|...+-..+. ...+..+...+...+........++.+|...+......... ..-+..++... -.||
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~l~~L~~vA--~ADG 87 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEER--LELVEALWEVA--YADG 87 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHH--HHHHHHHHHHH--HhcC
Confidence 378888888765554321 24567777888777766555668888888887665422111 14445555554 4567
Q ss_pred cccHHHHH
Q 031260 104 HITAAELA 111 (163)
Q Consensus 104 ~i~~~e~~ 111 (163)
.++..|-.
T Consensus 88 ~~~~~E~~ 95 (104)
T cd07313 88 ELDEYEEH 95 (104)
T ss_pred CCCHHHHH
Confidence 77777733
No 139
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=89.39 E-value=0.55 Score=28.78 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHhhCCCCCCceeHhHHHHHHch
Q 031260 46 PTGDQLHILLADMDSNGNGLVEFDELVALILP 77 (163)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 77 (163)
+++++++.+|..+..+..|.+.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 68899999999999999999999999988763
No 140
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=88.36 E-value=0.42 Score=26.65 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhccC
Q 031260 119 HPLTYGELSEMMREADTNGDGVISFNEFATIMAKSAA 155 (163)
Q Consensus 119 ~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 155 (163)
..++......+...|+.-..++|+.++|++.++..-+
T Consensus 20 ~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 20 KHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3455555556555555556667777777777665544
No 141
>PLN02230 phosphoinositide phospholipase C 4
Probab=88.31 E-value=3.5 Score=33.00 Aligned_cols=66 Identities=14% Similarity=0.298 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC-C--CCCHHHHHHHHHhhccC-------CCCceeHHHHHHHHhhc
Q 031260 87 QEQLMEVFRSFDRDGNGHITAAELAGSMAKMG-H--PLTYGELSEMMREADTN-------GDGVISFNEFATIMAKS 153 (163)
Q Consensus 87 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~--~~~~~~~~~~~~~~d~~-------~~g~i~~~ef~~~l~~~ 153 (163)
..++..+|..|..++ +.++.++|..+|...+ . ..+.+++..++..+... +.+.++.+.|..+|.+.
T Consensus 28 ~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 28 VADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred cHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 478999999995444 8999999999998864 2 23566667777654221 23469999999999874
No 142
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=87.31 E-value=8.8 Score=27.49 Aligned_cols=98 Identities=10% Similarity=0.127 Sum_probs=54.9
Q ss_pred CCCcccHHHHHH---HHHHhCCCCCHHH---HHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCC
Q 031260 26 SDGSLTQLELAA---LLRALGLKPTGDQ---LHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDR 99 (163)
Q Consensus 26 ~~g~i~~~e~~~---~l~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~ 99 (163)
-||.++..|+.. ++..++ ++.++ +..+|+.- .....++.+|+..+...+..+...-..-+...|...
T Consensus 68 ADG~Vse~Ei~~~~~l~~~~~--l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA-- 140 (267)
T PRK09430 68 AKGRVTEADIRIASQLMDRMN--LHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAA-- 140 (267)
T ss_pred cCCCcCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHH--
Confidence 589999999872 233343 44555 45555443 344488999988887665333221111223344443
Q ss_pred CCCCcccHHHH---HHHHHHhCCCCCHHHHHHHHHh
Q 031260 100 DGNGHITAAEL---AGSMAKMGHPLTYGELSEMMRE 132 (163)
Q Consensus 100 ~~~g~i~~~e~---~~~l~~~~~~~~~~~~~~~~~~ 132 (163)
-.||.++..|- +.+...+| ++..+...+...
T Consensus 141 ~ADG~l~~~E~~~L~~Ia~~Lg--is~~df~~~~~~ 174 (267)
T PRK09430 141 FADGSLHPNERQVLYVIAEELG--FSRFQFDQLLRM 174 (267)
T ss_pred HhcCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 35688888882 22333344 666666666554
No 143
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.02 E-value=0.67 Score=34.34 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHH-HHHHHHhhccCCCCceeHHHHHHHHh
Q 031260 87 QEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGE-LSEMMREADTNGDGVISFNEFATIMA 151 (163)
Q Consensus 87 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~~~~~~d~~~~g~i~~~ef~~~l~ 151 (163)
..+++++|..+|+.+.|+|+..-++.++...+..+++.. +..+-..+++..-|-|-..+|..-+.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 478999999999999999999999999999886565544 44444445666666666666554443
No 144
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=86.89 E-value=4.3 Score=23.53 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=35.6
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHH
Q 031260 28 GSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALI 75 (163)
Q Consensus 28 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 75 (163)
..||.+||.++-+..+.+.+.++...+....-.+.-.-.+-++=..++
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~ll 60 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLL 60 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 468999999999999999999999999998854443434444433333
No 145
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.83 E-value=0.83 Score=33.89 Aligned_cols=66 Identities=15% Similarity=0.336 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHH-HHHHHHhhCCCCCCceeHhHHHHHHch
Q 031260 12 LKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQ-LHILLADMDSNGNGLVEFDELVALILP 77 (163)
Q Consensus 12 ~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~ef~~~~~~ 77 (163)
-..+++.|+.+|+.++|+|+.+-++.++..++...++.+ +.-+-...+++.-|.|-..+|...+.+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~p 374 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFFP 374 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccccC
Confidence 456788999999999999999999999999985555444 445555567777777777776665543
No 146
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=85.58 E-value=2.9 Score=22.82 Aligned_cols=33 Identities=18% Similarity=0.441 Sum_probs=29.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031260 26 SDGSLTQLELAALLRALGLKPTGDQLHILLADM 58 (163)
Q Consensus 26 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 58 (163)
.+-.|+++.++..+..+|..+++..++++.+..
T Consensus 28 ~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 366899999999999999999999999998765
No 147
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=84.75 E-value=4.9 Score=22.24 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=29.8
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHH
Q 031260 105 ITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIM 150 (163)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 150 (163)
++-+++.+++...|..+++.++.++++.-+..+--..+-+.+..+|
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 3445778888888888888888888887543333344444444444
No 148
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=84.61 E-value=2.2 Score=27.22 Aligned_cols=70 Identities=16% Similarity=0.243 Sum_probs=36.3
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCC-------CCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCC
Q 031260 28 GSLTQLELAALLRALGLKPTGDQLHILLADMDS-------NGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRD 100 (163)
Q Consensus 28 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 100 (163)
+.|++.||.++-.-+.+ +...++.++..+.. +..+.|+|+.|..++..++....+. +..+.+|..|-..
T Consensus 6 ~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~--~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPE--DLCQHLFLSFQKK 81 (138)
T ss_dssp S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--H--HHHHHHHHHS---
T ss_pred eccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCH--HHHHHHHHHHhCc
Confidence 46677777665543321 23344555554422 2345799999999998877665433 6778888888544
Q ss_pred C
Q 031260 101 G 101 (163)
Q Consensus 101 ~ 101 (163)
.
T Consensus 82 ~ 82 (138)
T PF14513_consen 82 P 82 (138)
T ss_dssp -
T ss_pred c
Confidence 3
No 149
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.24 E-value=4.2 Score=22.53 Aligned_cols=34 Identities=9% Similarity=0.341 Sum_probs=30.3
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 031260 26 SDGSLTQLELAALLRALGLKPTGDQLHILLADMD 59 (163)
Q Consensus 26 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 59 (163)
.+-.|+++-++..+...|.++++..++++++...
T Consensus 35 ~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4568999999999999999999999999988763
No 150
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=83.13 E-value=4.9 Score=24.01 Aligned_cols=63 Identities=10% Similarity=0.210 Sum_probs=39.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccC---CCCceeHHHHHHHHhhccC
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTN---GDGVISFNEFATIMAKSAA 155 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~---~~g~i~~~ef~~~l~~~~~ 155 (163)
..+..-|..+.. +|++++..|-+++ |..-+.+-..++|..+... ....|+.+++..++.+.+.
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD 95 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISD 95 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhc
Confidence 456666777755 8899999988877 3334555566677666322 2457999999888877643
No 151
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=82.90 E-value=3.7 Score=31.80 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=61.0
Q ss_pred ccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhc
Q 031260 7 VQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLIN 86 (163)
Q Consensus 7 l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~ 86 (163)
+..+..+....+|...-+.+...++..+++.++..+|.....++--..|...+.... .+.|..++..+..... +
T Consensus 479 l~~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~-gv~yl~v~~~i~sel~-----D 552 (612)
T COG5069 479 LVWQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVS-GVFYLDVLKGIHSELV-----D 552 (612)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccccc-cchHHHHHHHHhhhhc-----C
Confidence 455666777788888777677789999999999999988877766666655433222 3778888777765433 3
Q ss_pred HHHHHHHHHhhCC
Q 031260 87 QEQLMEVFRSFDR 99 (163)
Q Consensus 87 ~~~~~~~f~~~D~ 99 (163)
+..++..|..++.
T Consensus 553 ~d~v~~~~~~f~d 565 (612)
T COG5069 553 YDLVTRGFTEFDD 565 (612)
T ss_pred hhhhhhhHHHHHH
Confidence 3566666666643
No 152
>PRK00523 hypothetical protein; Provisional
Probab=81.65 E-value=4.8 Score=22.47 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=29.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031260 26 SDGSLTQLELAALLRALGLKPTGDQLHILLADM 58 (163)
Q Consensus 26 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 58 (163)
.+-.|+++.++..+..+|..|++..++++.+..
T Consensus 36 ~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 36 ENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 466899999999999999999999999998765
No 153
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=81.53 E-value=11 Score=24.05 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=36.2
Q ss_pred CceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCC-------CCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhhc
Q 031260 64 GLVEFDELVALILPDISEQVLINQEQLMEVFRSFDR-------DGNGHITAAELAGSMAK-MGHPLTYGELSEMMREAD 134 (163)
Q Consensus 64 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~-------~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d 134 (163)
+.++..||.++-.-..... ..++.+.+.|.. +..+.|+.+.|+.+|++ +...++++-...+|..|-
T Consensus 6 ~~lsp~eF~qLq~y~eys~-----kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYST-----KKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQ 79 (138)
T ss_dssp S-S-HHHHHHHHHHHHH---------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS-
T ss_pred eccCHHHHHHHHHHHHHHH-----HHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 5577788877643221111 234444444422 23458999999999999 466678878888998884
No 154
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=81.17 E-value=9.9 Score=23.13 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=38.1
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031260 91 MEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREA 133 (163)
Q Consensus 91 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (163)
..+|-.++..++-..+..+++.+|...|.....+.++.++..+
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel 46 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh
Confidence 4566677778888999999999999999999999999999997
No 155
>PLN02223 phosphoinositide phospholipase C
Probab=79.07 E-value=14 Score=29.38 Aligned_cols=65 Identities=6% Similarity=0.073 Sum_probs=46.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHH---HHh-C-CCCCHHHHHHHHHhhccCC--------CCceeHHHHHHHHhhc
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSM---AKM-G-HPLTYGELSEMMREADTNG--------DGVISFNEFATIMAKS 153 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l---~~~-~-~~~~~~~~~~~~~~~d~~~--------~g~i~~~ef~~~l~~~ 153 (163)
+.++.+|..+. .+.|.++.+.+..++ ... | ...+.++.+.+++.+-... .+.++.++|..+|.+.
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s~ 93 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFST 93 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcCc
Confidence 78889999984 677888988888888 443 2 2356666666666653221 2569999999999875
No 156
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=78.92 E-value=11 Score=22.20 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=33.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHh-------CC----CCCHHHHHHHHHhhCCCCCCceeHhHHHHHHc
Q 031260 13 KQLKDIFMRFDMDSDGSLTQLELAALLRAL-------GL----KPTGDQLHILLADMDSNGNGLVEFDELVALIL 76 (163)
Q Consensus 13 ~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~~----~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 76 (163)
.+++-+|..+ .+++|.++...|..+|+.. |- ...+..+...|.... ....|+-++|+..+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHH
Confidence 5677788888 7889999999998887732 11 113444555555442 234466677766654
No 157
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=78.49 E-value=11 Score=21.93 Aligned_cols=69 Identities=12% Similarity=-0.029 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q 031260 46 PTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMG 118 (163)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 118 (163)
++..+....++..-. ..-.|+|.+|...+......... .....+=..+|--.+|+|+.-||--..+-++
T Consensus 4 ITK~eA~~FW~~~Fg-~r~IVPW~~F~~~L~~~h~~~~~---~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFq 72 (85)
T PF02761_consen 4 ITKAEAAEFWKTSFG-KRTIVPWSEFRQALQKVHPISSG---LEAMALKSTIDLTCNDYISNFEFDVFTRLFQ 72 (85)
T ss_dssp -SSHHHHHHHHHHHT-T-SEEEHHHHHHHHHHHS--SSH---HHHHHHHHHH-TTSSSEEEHHHHHHHHHHT-
T ss_pred eccHHHHHHHHHHCC-CCeEeeHHHHHHHHHHhcCCCch---HHHHHHHHHHhcccCCccchhhhHHHHHHHh
Confidence 445566666655432 23457888888877654433222 2223344456777888888888766655443
No 158
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.32 E-value=6.2 Score=35.42 Aligned_cols=72 Identities=13% Similarity=0.259 Sum_probs=53.4
Q ss_pred cccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCC----HHHHHHHHHhhCCCCCCceeHhHHHHHHchh
Q 031260 6 TVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPT----GDQLHILLADMDSNGNGLVEFDELVALILPD 78 (163)
Q Consensus 6 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 78 (163)
.|+++..+.+.+++..+|++..|+|+..++..+++.+..++. ... +-+--......++.|++.+-+.++...
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 488999999999999999999999999999999997643321 111 222222344567889999888777544
No 159
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=78.30 E-value=11 Score=21.90 Aligned_cols=43 Identities=16% Similarity=0.127 Sum_probs=30.5
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHH
Q 031260 103 GHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNE 145 (163)
Q Consensus 103 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 145 (163)
..||..||....+..|.++++++.+.+...+-.+.-.-.+-++
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~ 55 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQE 55 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHH
Confidence 4578888888888888888888888888877544433333333
No 160
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=77.65 E-value=7.2 Score=19.47 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhCC--CCCCcccHHHHHHHHHH
Q 031260 10 EQLKQLKDIFMRFDM--DSDGSLTQLELAALLRA 41 (163)
Q Consensus 10 ~~~~~l~~~f~~~D~--~~~g~i~~~e~~~~l~~ 41 (163)
..+..+..+|..+.. .....++..||..++..
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 445667777777742 34468888888887764
No 161
>PRK01844 hypothetical protein; Provisional
Probab=77.28 E-value=8.1 Score=21.60 Aligned_cols=33 Identities=15% Similarity=0.435 Sum_probs=29.8
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031260 26 SDGSLTQLELAALLRALGLKPTGDQLHILLADM 58 (163)
Q Consensus 26 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 58 (163)
.+-.|+++.++..+...|.+|++..++++.+..
T Consensus 35 ~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 456899999999999999999999999998776
No 162
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=77.12 E-value=3.8 Score=22.76 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=35.2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCC-------CCCCceeHhHHHHH
Q 031260 13 KQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDS-------NGNGLVEFDELVAL 74 (163)
Q Consensus 13 ~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~ef~~~ 74 (163)
..+...|+.+ .++.++|+..|+.+.|..- ++..+.+.... ...|..+|..|+..
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe-------~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTPE-------QAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-CC-------CHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCcH-------HHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 4678889999 7888999999999886421 12334333322 12367888888653
No 163
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=77.09 E-value=12 Score=22.75 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=8.5
Q ss_pred hCCCCCCceeHhHHHHHH
Q 031260 58 MDSNGNGLVEFDELVALI 75 (163)
Q Consensus 58 ~~~~~~~~i~~~ef~~~~ 75 (163)
||.+.+..|+.++...++
T Consensus 12 YDT~tS~YITLedi~~lV 29 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLV 29 (107)
T ss_pred cCCCccceeeHHHHHHHH
Confidence 344444455555544443
No 164
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=75.62 E-value=6.1 Score=23.47 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=21.4
Q ss_pred CCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031260 63 NGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAK 116 (163)
Q Consensus 63 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 116 (163)
||.++-.|-..+-. .+......+......+...+........+..++...+..
T Consensus 13 DG~v~~~E~~~i~~-~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDR-LLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHH-HHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55566555433322 222211112233333444443333344555555555443
No 165
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.93 E-value=5.6 Score=32.31 Aligned_cols=66 Identities=20% Similarity=0.375 Sum_probs=44.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHh---C-----CCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhcc
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKM---G-----HPLTYGELSEMMREADTNGDGVISFNEFATIMAKSA 154 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~---~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 154 (163)
..++..|..+|. ++|.++.+++..++... + ...+.+....++...+.+..|.+.+.++.-.+...+
T Consensus 18 ~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~~~ 91 (646)
T KOG0039|consen 18 DKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQIP 91 (646)
T ss_pred HHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHhch
Confidence 567777888876 78888888888777653 1 122344456667777777777777777776666544
No 166
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=74.64 E-value=9.6 Score=20.52 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=26.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031260 27 DGSLTQLELAALLRALGLKPTGDQLHILLADM 58 (163)
Q Consensus 27 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 58 (163)
+..+|.+|+...+..++-.++.+++-.+|..+
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 34678888888998888888888888888766
No 167
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=73.12 E-value=50 Score=28.17 Aligned_cols=86 Identities=9% Similarity=0.247 Sum_probs=60.3
Q ss_pred CcccHHH-----HHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhh-------hcHHHHHHHHH
Q 031260 28 GSLTQLE-----LAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVL-------INQEQLMEVFR 95 (163)
Q Consensus 28 g~i~~~e-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~-------~~~~~~~~~f~ 95 (163)
..|+.++ |..++..+ -.+.+++.||..+..+....++-+++..++....+.... .....+..+..
T Consensus 198 dsI~~d~f~~e~f~~~l~kl---cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~lie 274 (1189)
T KOG1265|consen 198 DSIEPDDFTLEKFYRLLNKL---CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIE 274 (1189)
T ss_pred CccChhhccHHHHHHHHHhc---CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHH
Confidence 4455544 44444444 445789999999987777889999999998654322111 12467888888
Q ss_pred hhCCCC----CCcccHHHHHHHHHH
Q 031260 96 SFDRDG----NGHITAAELAGSMAK 116 (163)
Q Consensus 96 ~~D~~~----~g~i~~~e~~~~l~~ 116 (163)
.|.+++ +|.++.+-|...+..
T Consensus 275 kyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 275 KYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred HcCCchhhhhccccchhhhHHHhhC
Confidence 887765 688999998888865
No 168
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=72.80 E-value=16 Score=22.90 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=44.7
Q ss_pred CCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCC
Q 031260 26 SDGSLTQLELAALLRAL--GLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNG 103 (163)
Q Consensus 26 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g 103 (163)
-||.++..|...+...+ ....+..+...+...+........++.+++..+......... ..-+..++...-. ||
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r--~~ll~~l~~ia~A--DG 111 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEER--EDLLRMLIAIAYA--DG 111 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHH--HHHHHHHHHHCTC--TT
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHH--HHHHHHHHHHHhc--CC
Confidence 58899988887766644 233445556666655544333457788888777665443222 1455666777644 45
Q ss_pred cccHHH
Q 031260 104 HITAAE 109 (163)
Q Consensus 104 ~i~~~e 109 (163)
.++..|
T Consensus 112 ~~~~~E 117 (140)
T PF05099_consen 112 EISPEE 117 (140)
T ss_dssp C-SCCH
T ss_pred CCCHHH
Confidence 555555
No 169
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=72.41 E-value=20 Score=22.07 Aligned_cols=53 Identities=11% Similarity=0.171 Sum_probs=40.9
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHH
Q 031260 91 MEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFAT 148 (163)
Q Consensus 91 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 148 (163)
..+|-.....++..+|.+++..+|...|..+.+..+..+++.+.. .+.++.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 345555556677789999999999999999999999999888832 45555554
No 170
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=72.05 E-value=19 Score=21.61 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCC---CCCCcccHHHHHHHHHH
Q 031260 48 GDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDR---DGNGHITAAELAGSMAK 116 (163)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~---~~~g~i~~~e~~~~l~~ 116 (163)
-..++.-|..+.. +|.+....|-.+++..-.. +....+|..+-. -....|+.+|+++++..
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~dSk------eFA~eLFdALaRrr~i~~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIGMKDSK------EFAGELFDALARRRGIKGDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT--S-H------HHHHHHHHHHHHHTT--SSEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcCCcccH------HHHHHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence 4455555666644 7889999999988754111 334445554421 22467888888887765
No 171
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=72.03 E-value=13 Score=20.06 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=27.0
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031260 103 GHITAAELAGSMAKMGHPLTYGELSEMMREAD 134 (163)
Q Consensus 103 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 134 (163)
-.+|.+|+.+++..++..++..++-.+|...-
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~ 39 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQVH 39 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 35788999999999998899888888888764
No 172
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=70.92 E-value=21 Score=21.76 Aligned_cols=54 Identities=15% Similarity=0.433 Sum_probs=42.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHH
Q 031260 15 LKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVA 73 (163)
Q Consensus 15 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~ 73 (163)
+...|-.++..++...+..++.++|...|.....+.++.+++.+ .|+ +.+|.+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA 56 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIA 56 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHH
Confidence 34556677777788889999999999999999999999999887 233 5555543
No 173
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=70.83 E-value=11 Score=20.50 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=25.5
Q ss_pred HhhCCCCCCcccHHHHHHHHHH----------hCCCCCHHHHHHHHH
Q 031260 95 RSFDRDGNGHITAAELAGSMAK----------MGHPLTYGELSEMMR 131 (163)
Q Consensus 95 ~~~D~~~~g~i~~~e~~~~l~~----------~~~~~~~~~~~~~~~ 131 (163)
+.||.....+||.+++.++.+. .|..++...+-.++-
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~ 56 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIIL 56 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHH
Confidence 4678888999999999998865 144555555444443
No 174
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=70.16 E-value=7.3 Score=16.12 Aligned_cols=14 Identities=43% Similarity=0.838 Sum_probs=7.4
Q ss_pred CCCCCCcccHHHHH
Q 031260 98 DRDGNGHITAAELA 111 (163)
Q Consensus 98 D~~~~g~i~~~e~~ 111 (163)
|.+++|.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 34566666655543
No 175
>PLN02228 Phosphoinositide phospholipase C
Probab=68.65 E-value=26 Score=28.17 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=12.0
Q ss_pred CHHHHHHHHHhhCCCCCCceeHhHHHHHH
Q 031260 47 TGDQLHILLADMDSNGNGLVEFDELVALI 75 (163)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 75 (163)
+..++..+|..+.. ++.++.++|..++
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL 48 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFV 48 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHH
Confidence 34445555544432 1235555544444
No 176
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=67.92 E-value=7.7 Score=22.21 Aligned_cols=43 Identities=14% Similarity=0.246 Sum_probs=25.4
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREAD 134 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 134 (163)
..++.+...- ...|+||..++..+|... .+++..++.++..+.
T Consensus 7 ~~i~~Li~~g--K~~G~lT~~eI~~~L~~~--~~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 7 EAIKKLIEKG--KKKGYLTYDEINDALPED--DLDPEQIDEIYDTLE 49 (82)
T ss_dssp HHHHHHHHHH--HHHSS-BHHHHHHH-S-S-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hhcCcCCHHHHHHHcCcc--CCCHHHHHHHHHHHH
Confidence 3444444442 346889999999988643 377888888888874
No 177
>PLN02230 phosphoinositide phospholipase C 4
Probab=66.05 E-value=27 Score=28.28 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhCCCCCCceeHhHHHHHHc
Q 031260 48 GDQLHILLADMDSNGNGLVEFDELVALIL 76 (163)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 76 (163)
..++..+|..+..++ +.++.++|..++.
T Consensus 28 ~~ei~~lf~~~s~~~-~~mt~~~l~~FL~ 55 (598)
T PLN02230 28 VADVRDLFEKYADGD-AHMSPEQLQKLMA 55 (598)
T ss_pred cHHHHHHHHHHhCCC-CccCHHHHHHHHH
Confidence 344444444443222 3444444444443
No 178
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=66.02 E-value=28 Score=21.29 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=41.7
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHh
Q 031260 92 EVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMA 151 (163)
Q Consensus 92 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 151 (163)
.+|-.....++..+|.+++..+|...|..+.+..+..+++.+.. .++++.+.--.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g~ 59 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAGK 59 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHhH
Confidence 34445555677789999999999999999999889988888732 45666665433
No 179
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=64.48 E-value=22 Score=19.64 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHH
Q 031260 30 LTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALI 75 (163)
Q Consensus 30 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 75 (163)
++..++..++...|..++..++..+++.-+..+-..++-+.+..++
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 4456788888888889999999998887654433344444444444
No 180
>PLN02222 phosphoinositide phospholipase C 2
Probab=64.25 E-value=45 Score=26.93 Aligned_cols=62 Identities=18% Similarity=0.302 Sum_probs=44.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhCC-CCCCceeHhHHHHHHch
Q 031260 14 QLKDIFMRFDMDSDGSLTQLELAALLRALGL--KPTGDQLHILLADMDS-NGNGLVEFDELVALILP 77 (163)
Q Consensus 14 ~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~~-~~~~~i~~~ef~~~~~~ 77 (163)
.+..+|..+-. ++.++.++|..+|..... ..+.+.+..++..+.. ...+.++++.|..++..
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 55666766643 479999999999997654 3467778888887632 23456899999988854
No 181
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=63.07 E-value=29 Score=20.55 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=38.7
Q ss_pred CCCcccHHHHHHHHHHhCC-----CCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCC
Q 031260 26 SDGSLTQLELAALLRALGL-----KPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRD 100 (163)
Q Consensus 26 ~~g~i~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 100 (163)
-||.++..|...+.+.+.. ......+..++......- ...+..++...+.....+... ..-+..++... .
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~ia--~ 89 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELR--ETAFAVAVDIA--A 89 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHH--HHHHHHHHHHH--H
Confidence 3788888888777665531 233445555555442210 023445555555444321111 13334444444 3
Q ss_pred CCCcccHHH
Q 031260 101 GNGHITAAE 109 (163)
Q Consensus 101 ~~g~i~~~e 109 (163)
.||.++..|
T Consensus 90 aDG~~~~~E 98 (111)
T cd07176 90 ADGEVDPEE 98 (111)
T ss_pred ccCCCCHHH
Confidence 456666655
No 182
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=62.77 E-value=14 Score=19.95 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=20.1
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHH
Q 031260 104 HITAAELAGSMAKMGHPLTYGELSE 128 (163)
Q Consensus 104 ~i~~~e~~~~l~~~~~~~~~~~~~~ 128 (163)
.|+.++|..+|+.....++++++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 4888999999999888888888765
No 183
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=62.11 E-value=37 Score=21.34 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=20.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031260 89 QLMEVFRSFDRDGNGHITAAELAGSMAK 116 (163)
Q Consensus 89 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 116 (163)
.+-.+...||++++|.|+.-.++-.+..
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 4567789999999999999999888754
No 184
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=60.25 E-value=20 Score=19.59 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=30.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCC
Q 031260 101 GNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNG 137 (163)
Q Consensus 101 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 137 (163)
.++.++..++.+.|...|..++++.+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4577889999999988888898888888888886654
No 185
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=59.41 E-value=32 Score=26.49 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=34.5
Q ss_pred CCCCceeHhHHHHHHchhhhhH-hhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031260 61 NGNGLVEFDELVALILPDISEQ-VLINQEQLMEVFRSFDRDGNGHITAAELAGSMAK 116 (163)
Q Consensus 61 ~~~~~i~~~ef~~~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 116 (163)
.++....-.+|+..-.+.+... ..-..+.++.+-+..|.|.+|.|+.+|--.+++.
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 3444455556655554443322 2223466777778888888888888887777654
No 186
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=59.36 E-value=45 Score=21.49 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=24.9
Q ss_pred HHHHHHHhCCCCCHHHHHHHHH----------hhccCCCCceeHHHHHHH
Q 031260 110 LAGSMAKMGHPLTYGELSEMMR----------EADTNGDGVISFNEFATI 149 (163)
Q Consensus 110 ~~~~l~~~~~~~~~~~~~~~~~----------~~d~~~~g~i~~~ef~~~ 149 (163)
+.+-+..+|..++++++..++. .+-.+..|..+...|.++
T Consensus 95 l~~e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 95 LEQEFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQF 144 (145)
T ss_pred HHHHHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhh
Confidence 4445556788888887777661 122346777777776655
No 187
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=58.59 E-value=36 Score=20.07 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=39.3
Q ss_pred CCCcccHHHHHHH---HHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCC
Q 031260 26 SDGSLTQLELAAL---LRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGN 102 (163)
Q Consensus 26 ~~g~i~~~e~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 102 (163)
-||.++..|...+ +..+. .+..+...+...+........++.+|...+.............-+..++... -.|
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA--~AD 87 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMG--LDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIA--YAD 87 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHc
Confidence 3778887776544 44432 3333333443333222222267777777766543111111113444455554 346
Q ss_pred CcccHHH
Q 031260 103 GHITAAE 109 (163)
Q Consensus 103 g~i~~~e 109 (163)
|.++..|
T Consensus 88 G~~~~~E 94 (106)
T cd07316 88 GELSEAE 94 (106)
T ss_pred CCCCHHH
Confidence 7777776
No 188
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=57.89 E-value=30 Score=25.73 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=24.5
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHH
Q 031260 102 NGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIM 150 (163)
Q Consensus 102 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 150 (163)
.|.||++|-.+.++......+++.++.+++.+ .||-+||.+++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~l------g~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYL------GISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHh------CCCHHHHHHHh
Confidence 46666666666666544444455566666665 35555555543
No 189
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=57.82 E-value=4.4 Score=27.55 Aligned_cols=105 Identities=19% Similarity=0.199 Sum_probs=58.6
Q ss_pred cccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh---hCC-CCCCceeHhHHHHHHchhh
Q 031260 4 METVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLAD---MDS-NGNGLVEFDELVALILPDI 79 (163)
Q Consensus 4 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~---~~~-~~~~~i~~~ef~~~~~~~~ 79 (163)
|.+++...+..+.++...+-. .+ .++...-...+...|..--++.+.-+... .|. .-+|.++-.|++.+-.+..
T Consensus 141 ltefp~rm~dwl~~vl~~l~~-r~-el~~~~~~e~~~ea~~~d~~k~i~pv~wqf~qld~~p~d~~~sh~el~pl~ap~i 218 (259)
T KOG4004|consen 141 LTEFPLRMRDWLKNVLVTLYE-RD-ELTEKHENEKRLEAGDHDFEKYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLI 218 (259)
T ss_pred HHhhhHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHhhcccccccceeeeeeeeeccccCCCccccccccccccccCCcc
Confidence 445666666666666544411 11 24544544444444433222233222222 222 2367788888777665554
Q ss_pred hhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 031260 80 SEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMA 115 (163)
Q Consensus 80 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 115 (163)
+-. --+...|.-.|.|+||+|...|+...+.
T Consensus 219 pme-----~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 219 PME-----HCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred cHH-----hhchhhhhcccCCCCCceeHHHhhcccC
Confidence 321 4567788888888889988888876653
No 190
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=56.75 E-value=77 Score=25.01 Aligned_cols=60 Identities=17% Similarity=0.318 Sum_probs=42.7
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh---CC-----CCCCceeHhHHHHHHch
Q 031260 18 IFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADM---DS-----NGNGLVEFDELVALILP 77 (163)
Q Consensus 18 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---~~-----~~~~~i~~~ef~~~~~~ 77 (163)
+|..+-..+++.++...|..+|+..|+..++..+..++... +. .....++-+.|..++..
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 56777555679999999999999999977766555554432 21 23356788888888754
No 191
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=55.54 E-value=17 Score=24.00 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=29.9
Q ss_pred hhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031260 84 LINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREA 133 (163)
Q Consensus 84 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (163)
..+..++..+++.+-.++...++..+|.+.+ ..|..+|++++......+
T Consensus 81 lkt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-GVGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 81 LKTNLQLDAALKYLKSNPSEPIDVAEFEKAC-GVGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp --SHHHHHHHHHHHHHHGG-G--HHHHHHTT-TTT----HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHc-CCCeEECHHHHHHHHHHH
Confidence 3345788888888865665679999988776 357788999987776665
No 192
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=53.92 E-value=44 Score=19.64 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=40.7
Q ss_pred ccccHHHHHHHHHHHHhhCC--CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCC
Q 031260 5 ETVQSEQLKQLKDIFMRFDM--DSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGN 63 (163)
Q Consensus 5 ~~l~~~~~~~l~~~f~~~D~--~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 63 (163)
+.|+++++..++...+..-+ ..++-|+..-|.-+-..+-.....+.+..+.+.+.-+.+
T Consensus 2 ~pL~~~el~~ik~~v~~~~~~gv~~~GiT~~GFl~L~~lfierGR~ETtW~vLR~FgY~d~ 62 (89)
T PF08356_consen 2 KPLQPQELEDIKKVVRENIPDGVNDNGITLDGFLFLNKLFIERGRHETTWTVLRKFGYDDD 62 (89)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcCCCccchhhHHHHHHHHHHhCcchHHHHHHHHcCCCCc
Confidence 35788888888887766633 344568888887766554445556677888888866554
No 193
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=53.43 E-value=51 Score=20.31 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=37.9
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHH
Q 031260 94 FRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFAT 148 (163)
Q Consensus 94 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 148 (163)
|-..-..++..+|.+++..+|...|..+.+..+..+++.+.. -++.+.+.
T Consensus 7 yll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 7 YLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 333434567789999999999999999998888888888732 45666653
No 194
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.55 E-value=26 Score=23.51 Aligned_cols=107 Identities=11% Similarity=0.193 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh----CCCCCCceeHhHHHHHHchhhh-----
Q 031260 10 EQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADM----DSNGNGLVEFDELVALILPDIS----- 80 (163)
Q Consensus 10 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~ef~~~~~~~~~----- 80 (163)
..+..++++|..+|+..--..+.+++.+++..-+.-.++.-+..+.... .... + ++.+|+=.+....+
T Consensus 50 ~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~-e--sf~~ylW~fv~~~Pi~~~~ 126 (179)
T TIGR00624 50 RKRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQ-N--DLVEFLWSFVNHQPQPRQR 126 (179)
T ss_pred HhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHH-c--cHHHHHHhccCCCCccCCc
Confidence 4566789999999999888999999999998776655555554443321 0011 1 66666533211000
Q ss_pred ---hHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC
Q 031260 81 ---EQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGH 119 (163)
Q Consensus 81 ---~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 119 (163)
...+.....-..+.+.+-+.|-..+...-...+|++.|.
T Consensus 127 ~~~~~~p~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G~ 168 (179)
T TIGR00624 127 PTDSEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATGM 168 (179)
T ss_pred cccccCCCCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHCC
Confidence 000111122344455555566666666667777777664
No 195
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=52.21 E-value=33 Score=23.18 Aligned_cols=37 Identities=30% Similarity=0.334 Sum_probs=24.5
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 031260 23 DMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMD 59 (163)
Q Consensus 23 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 59 (163)
..+.+|+++.+++.+.+..-+...+.+++.++...-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 4577999999999999998777788999999887654
No 196
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=51.89 E-value=35 Score=23.01 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=21.1
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031260 98 DRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREA 133 (163)
Q Consensus 98 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (163)
..+.+|++..+++.+.+..-+..++.+++..+...-
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 457788888888888887766667788887777653
No 197
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.75 E-value=25 Score=26.78 Aligned_cols=55 Identities=27% Similarity=0.430 Sum_probs=42.6
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHH
Q 031260 90 LMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFA 147 (163)
Q Consensus 90 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 147 (163)
...+|..+. .-+|.|+...-+.-+-. ..++...+-.+|...|.|+||.++-+||.
T Consensus 446 yde~fy~l~-p~~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 446 YDEIFYTLS-PVNGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred hHhhhhccc-ccCceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 455666664 34588887776666644 45788899999999999999999999995
No 198
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=51.59 E-value=50 Score=21.08 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=38.3
Q ss_pred CCCCcccHHHHHHHHHHhCC---------CCCHHHHHHHHHhhccCCCC-ceeHHHHHHH
Q 031260 100 DGNGHITAAELAGSMAKMGH---------PLTYGELSEMMREADTNGDG-VISFNEFATI 149 (163)
Q Consensus 100 ~~~g~i~~~e~~~~l~~~~~---------~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~ 149 (163)
=|+..||.+||.+++..-.. .+.+++++.+.+.+.....+ .++..|-++.
T Consensus 79 lGd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 79 LGDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred ECCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 36788999999999976422 36889999999998776555 4888887664
No 199
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.39 E-value=1.2e+02 Score=23.89 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=32.2
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 99 RDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 99 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
....|.+.++.|..++...........+.++...=-. ..--+++..++++++
T Consensus 234 ~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~--Pnl~TfNalL~c~ak 285 (625)
T KOG4422|consen 234 RAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMT--PNLFTFNALLSCAAK 285 (625)
T ss_pred HHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcC--CchHhHHHHHHHHHH
Confidence 3557889999998888877666666666666555211 123355555555544
No 200
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=51.32 E-value=51 Score=19.67 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=21.2
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCC
Q 031260 30 LTQLELAALLRALGLKPTGDQLHILLADMDS 60 (163)
Q Consensus 30 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 60 (163)
++..+...++..+...++++++.++...+..
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~ 50 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAA 50 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHh
Confidence 6777777777777777888887777766643
No 201
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=49.84 E-value=40 Score=17.96 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHh
Q 031260 7 VQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFD 69 (163)
Q Consensus 7 l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 69 (163)
|++.....|+.+|.... ..+.++..++.+.|. .+...+..++..+.. .|.|.++
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L~~--~GlV~~~ 55 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERLG-----VSPPTVTEMLKRLAE--KGLVEYE 55 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHHT-----S-HHHHHHHHHHHHH--TTSEEEE
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHHC-----CChHHHHHHHHHHHH--CCCEEec
Confidence 56677777888888775 677888888888773 556666677666643 4555543
No 202
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=47.99 E-value=28 Score=18.14 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=21.3
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 031260 101 GNGHITAAELAGSMAKMGHPLTYGELSEMMR 131 (163)
Q Consensus 101 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 131 (163)
..|.|+.+||.+-+...-..-+..++..++.
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 5688888888887776544456666666553
No 203
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=47.77 E-value=9.1 Score=26.09 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=40.0
Q ss_pred HHHhhCCC-CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 93 VFRSFDRD-GNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 93 ~f~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
-|-.+|+. -||+++-.|+.-+-..+ +++. .-+..+|+-.|.|+||.|+++||-..+.-.
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~ap~-ipme-~c~~~f~e~cd~~nd~~ial~ew~~c~gik 251 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLRAPL-IPME-HCTTRFFETCDLDNDKYIALDEWAGCFGIK 251 (259)
T ss_pred eeccccCCCccccccccccccccCCc-ccHH-hhchhhhhcccCCCCCceeHHHhhcccCcc
Confidence 34555543 58999998876544333 2232 123467888899999999999998877544
No 204
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=47.60 E-value=49 Score=18.40 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=24.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhh
Q 031260 27 DGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDIS 80 (163)
Q Consensus 27 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~ 80 (163)
+-.++...+..++... ++...+..+...|+.=..+.|+-++|+..+...+.
T Consensus 6 sp~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKH---LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CCcccHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3445544444444433 34444444444443333455666666666655544
No 205
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=47.46 E-value=51 Score=22.17 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=14.2
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031260 100 DGNGHITAAELAGSMAKMGHPLTYGELSEMM 130 (163)
Q Consensus 100 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 130 (163)
|.+|++..+++.+.+...+..++.+++..+.
T Consensus 29 d~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV 59 (179)
T PRK00819 29 DEEGWVDIDALIEALAKAYKWVTRELLEAVV 59 (179)
T ss_pred CCCCCEEHHHHHHHHHHccCCCCHHHHHHHH
Confidence 4445555555554444333334444444443
No 206
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=47.24 E-value=24 Score=22.92 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHhCC----CCCHHHHHHHHHhhccCCCCceeHHHHHHHH
Q 031260 105 ITAAELAGSMAKMGH----PLTYGELSEMMREADTNGDGVISFNEFATIM 150 (163)
Q Consensus 105 i~~~e~~~~l~~~~~----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 150 (163)
++...+..+++.++. .++.-.+...|..+-.-.-+.|+|++|...|
T Consensus 34 m~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal 83 (180)
T KOG4070|consen 34 MNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKAL 83 (180)
T ss_pred cccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHH
Confidence 555566666666533 3444555566666654455567777774433
No 207
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.15 E-value=60 Score=24.91 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=37.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHH
Q 031260 14 QLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVAL 74 (163)
Q Consensus 14 ~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~ 74 (163)
.+.++|..+.+ -+|.|+-..-+..+-.. .++..-+.++|...|.+.+|.++=+||.-+
T Consensus 445 ~yde~fy~l~p-~~gk~sg~~ak~~mv~s--klpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 445 TYDEIFYTLSP-VNGKLSGRNAKKEMVKS--KLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred chHhhhhcccc-cCceeccchhHHHHHhc--cCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 34566777744 56777766666555443 345556777777777777887877777544
No 208
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=46.95 E-value=1.7e+02 Score=24.78 Aligned_cols=100 Identities=13% Similarity=0.103 Sum_probs=64.3
Q ss_pred HHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHH-------Hh-----
Q 031260 50 QLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMA-------KM----- 117 (163)
Q Consensus 50 ~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~-------~~----- 117 (163)
-++-+++.||...+|.|..-+|.-.+...+..... +.++.+|+.....+.-. +.-.|..+|. .+
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lck~~le---ek~~ylF~~vA~~~sq~-~q~~l~lLL~dliqipr~lGE~aA 546 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLE---DKYRYLFKQVASSTSQC-DQRRLGLLLHDLIQIPRQLGEVAA 546 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHhcchhH---HHHHHHHHHHcCchhhH-HHHHHHHHHHHHHHHHHHHhHHHh
Confidence 35788999999989998887776666555443333 67889999985444333 2444444443 22
Q ss_pred -CCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhccC
Q 031260 118 -GHPLTYGELSEMMREADTNGDGVISFNEFATIMAKSAA 155 (163)
Q Consensus 118 -~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 155 (163)
|.+=-+.-++.+|.. .++--.|....|+..+.-.+.
T Consensus 547 fGgsNvepsvrsCF~~--v~~~pei~~~~f~dw~~~epq 583 (966)
T KOG4286|consen 547 FGGSNIEPSVRSCFQF--VNNKPEIEAALFLDWMRLEPQ 583 (966)
T ss_pred hcCCCCChHHHHHHHh--cCCCCcchHHHHHHHhccCcc
Confidence 222223456788883 344457999999998876644
No 209
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=45.85 E-value=69 Score=23.01 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=21.8
Q ss_pred CCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 101 GNGHITAAELAGSMAKM--GHPLTYGELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 101 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
.||.|+..|+. +.+.+ ...+++++...+.+.+...+....++.+|++.+..
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRS 120 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 35666666654 22221 12244444333333333333333555555555544
No 210
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=45.46 E-value=32 Score=18.48 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=15.6
Q ss_pred ccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031260 5 ETVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRA 41 (163)
Q Consensus 5 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~ 41 (163)
.+++-+.+....+.| ..++ +...++.+|+..+|..
T Consensus 10 gsl~l~RIh~mLkmf-~~~~-~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 10 GSLPLDRIHSMLKMF-PKDP-GGYDISLEELQEFLDR 44 (60)
T ss_dssp -SEEHHHHHHHHHHH--GGG---TT--HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhc-cCCC-CCCCCCHHHHHHHHHH
Confidence 345555555555555 2233 3345555666666553
No 211
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=44.93 E-value=59 Score=18.54 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHhhccCC-CCceeHHHHHHHH
Q 031260 106 TAAELAGSMAKMGHPLTYGELSEMMREADTNG-DGVISFNEFATIM 150 (163)
Q Consensus 106 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~-~g~i~~~ef~~~l 150 (163)
+.+++.+.| .|.+.+.+.+...+...+... -+.++.++|++++
T Consensus 43 ~i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 466777777 355678888888888886543 3678888888764
No 212
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=44.86 E-value=46 Score=18.48 Aligned_cols=46 Identities=15% Similarity=0.279 Sum_probs=26.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhh
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKM----GHPLTYGELSEMMREA 133 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~ 133 (163)
..+..+...++....--+-..+++.++..+ |...+++.++.+|..|
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 445555555544433445566677776654 6677777888888765
No 213
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=44.58 E-value=44 Score=24.98 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=42.3
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCc---eeHHHHHHHHhhcc
Q 031260 93 VFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGV---ISFNEFATIMAKSA 154 (163)
Q Consensus 93 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~---i~~~ef~~~l~~~~ 154 (163)
....+|..+.|.++....+-.|..+...--.+.++.+|.... ++.|- |.|..|++-..+.+
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlslp 178 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLP 178 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCC
Confidence 345679999999999999988887544444567889999884 45565 45555555444433
No 214
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=44.48 E-value=49 Score=25.79 Aligned_cols=31 Identities=6% Similarity=0.150 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 031260 11 QLKQLKDIFMRFDMDSDGSLTQLELAALLRAL 42 (163)
Q Consensus 11 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~ 42 (163)
....+..++ .+.....+.-+.+||.+.+...
T Consensus 287 ~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~ 317 (445)
T PF13608_consen 287 EEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEV 317 (445)
T ss_pred HHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhc
Confidence 334455555 5545556677777777777754
No 215
>PLN02223 phosphoinositide phospholipase C
Probab=44.09 E-value=1.5e+02 Score=23.88 Aligned_cols=65 Identities=9% Similarity=0.056 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHH---HHhC--CCCCHHHHHHHHHhhCCC--------CCCceeHhHHHHHHch
Q 031260 12 LKQLKDIFMRFDMDSDGSLTQLELAALL---RALG--LKPTGDQLHILLADMDSN--------GNGLVEFDELVALILP 77 (163)
Q Consensus 12 ~~~l~~~f~~~D~~~~g~i~~~e~~~~l---~~~~--~~~~~~~~~~~~~~~~~~--------~~~~i~~~ef~~~~~~ 77 (163)
...++.+|..+ ..+.|.++...+.+++ .... ...+.++++.++..+-.. ..+.++.+.|..++..
T Consensus 15 p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 15 PDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred cHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 34566778888 4678999999999988 3322 256666766666654221 1255899999888854
No 216
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=43.63 E-value=58 Score=18.10 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=22.3
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031260 103 GHITAAELAGSMAKMGHPLTYGELSEMMREAD 134 (163)
Q Consensus 103 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 134 (163)
..-+.+|+...|...|+.+++.-+..-++.+.
T Consensus 18 ~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 18 EISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp ---SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 45688899999999999999988888777763
No 217
>PF07572 BCNT: Bucentaur or craniofacial development; InterPro: IPR011421 Vertebrate BCNT (named after Bucentaur) or human craniofacial development protein 1 (CFDP1) are characterised by an N-terminal acidic region, a central and single IR element (inverted repeat) from the retrotransposable element-1 family (RTE-1) and a highly conserved 82-amino acid region at the C terminus. This entry represents the BCNT C-terminal domain that is also found in Drosophila YETI, a protein that binds to a microtubule-based motor kinesin-1, and the yeast SWR1-complex protein 5 (SWC5), a component of the SWR1 chromatin remodeling complex [, ]. In the bovine genome recombination of BCNT through the IR element with a member of the retrotransposable element-1 family, leads to gene duplications, the insertion of the RTE-1 apurinic/apyrimidinic endonuclease (APE)-like domain (see IPR005135 from INTERPRO) with the concomitant loss of the conserved C-terminal domain of BCNT and with the additional recruitment of either 2 (p97bcnt) or 3 (p97bcnt-2) C-terminal IR-elements [].
Probab=43.55 E-value=24 Score=20.31 Aligned_cols=27 Identities=4% Similarity=0.239 Sum_probs=18.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH
Q 031260 89 QLMEVFRSFDRDGNGHITAAELAGSMA 115 (163)
Q Consensus 89 ~~~~~f~~~D~~~~g~i~~~e~~~~l~ 115 (163)
.|..-...+.+.++||+...+|.+-..
T Consensus 40 gi~deL~~~~k~k~gYLekq~FL~R~d 66 (81)
T PF07572_consen 40 GIEDELEKHNKGKDGYLEKQDFLQRVD 66 (81)
T ss_pred chHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 445555666667889999988776553
No 218
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.18 E-value=1.2e+02 Score=21.74 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=29.0
Q ss_pred HHHHHHHhh-CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh--hccCCCCceeHHHHHHHHhhc
Q 031260 89 QLMEVFRSF-DRDGNGHITAAELAGSMAKMGHPLTYGELSEMMRE--ADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 89 ~~~~~f~~~-D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~--~d~~~~g~i~~~ef~~~l~~~ 153 (163)
.+...|..| |+..+..|..+-+..++..+|... +++..+.-. +....-+..+.++|+.-+...
T Consensus 65 ~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p--~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 65 RLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEP--EDISVLVLAWKLGAATMCEFSREEFLKGMTAL 130 (260)
T ss_pred HHHHHHHHhcCcccccccChHHHHHHHHHhCCCc--hhHHHHHHHHHhccchhhhhhHHHHHHHHHHc
Confidence 344444433 444445566666666666665432 222222222 222233556666666555444
No 219
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.55 E-value=47 Score=16.74 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=22.0
Q ss_pred CCCccc-HHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031260 101 GNGHIT-AAELAGSMAKMGHPLTYGELSEMMREA 133 (163)
Q Consensus 101 ~~g~i~-~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (163)
..|.|+ ..++.+.|...|+.++++.++.+++..
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 456676 444555556678888888888877653
No 220
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=42.45 E-value=27 Score=22.55 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=20.4
Q ss_pred ccccccHHHHHHHHHHHHhhCCCCC
Q 031260 3 VMETVQSEQLKQLKDIFMRFDMDSD 27 (163)
Q Consensus 3 ~~~~l~~~~~~~l~~~f~~~D~~~~ 27 (163)
++++|+++++..|..-...+|+++.
T Consensus 20 lL~~LS~EEL~~L~~el~e~DPd~~ 44 (147)
T PF03250_consen 20 LLAKLSPEELEELENELEEMDPDNS 44 (147)
T ss_pred HHHhCCHHHHHHHHHHHHhhCCCcc
Confidence 4678999999999988888888653
No 221
>PHA02105 hypothetical protein
Probab=41.98 E-value=56 Score=17.39 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=28.1
Q ss_pred ccHHHHHHHHHHh---CCCCCHHHHHHHHHhhCCCCC--CceeHhHHHHHH
Q 031260 30 LTQLELAALLRAL---GLKPTGDQLHILLADMDSNGN--GLVEFDELVALI 75 (163)
Q Consensus 30 i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~--~~i~~~ef~~~~ 75 (163)
++.+++..++..- .+++..+.++++-..+....- -.++|+||-.++
T Consensus 5 lt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 5 LTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred ecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 5667777776632 235556667776666655443 346888876553
No 222
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.27 E-value=68 Score=19.81 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=22.4
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031260 105 ITAAELAGSMAKMGHPLTYGELSEMMREA 133 (163)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (163)
-|..|++.++..-+..++.++++.+++-.
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 35678888888888888888888877654
No 223
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=41.11 E-value=1.1e+02 Score=24.31 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=48.4
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh---cc----C-CCCceeHHHHHHHHhhc
Q 031260 91 MEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREA---DT----N-GDGVISFNEFATIMAKS 153 (163)
Q Consensus 91 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d~----~-~~g~i~~~ef~~~l~~~ 153 (163)
.-+|..|-....+.++.-.|..+|+..|..-++..+..+++.+ +. + ..+.++.+-|.+++.+.
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sS 159 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSS 159 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccc
Confidence 3467777445569999999999999999988888888887775 22 2 23579999999888654
No 224
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=40.47 E-value=75 Score=18.47 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=38.0
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhccCcccc
Q 031260 101 GNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKSAADFLG 159 (163)
Q Consensus 101 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~ 159 (163)
++|.|+.++...+-. .+-+++.++.++... -.-|..-.+-|..++.+....+..
T Consensus 26 ~n~~it~E~y~~V~a---~~T~qdkmRkLld~v--~akG~~~k~~F~~iL~e~~~~y~~ 79 (85)
T cd08324 26 KNDYFSTEDAEIVCA---CPTQPDKVRKILDLV--QSKGEEVSEYFLYLLQQLADAYVD 79 (85)
T ss_pred ccCCccHHHHHHHHh---CCCCHHHHHHHHHHH--HhcCchHHHHHHHHHHHHHHhhhh
Confidence 678999998776664 235667788888885 345667788888888876555443
No 225
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=40.43 E-value=1.4e+02 Score=22.74 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=29.3
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHhCCCC-------CHH----HHHHHHHhhCCCCC
Q 031260 19 FMRFDMDSDGSLTQLELAALLRALGLKP-------TGD----QLHILLADMDSNGN 63 (163)
Q Consensus 19 f~~~D~~~~g~i~~~e~~~~l~~~~~~~-------~~~----~~~~~~~~~~~~~~ 63 (163)
|..+|.+....++.++...++...|++. +.. ++..+...++..+.
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gR 218 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGR 218 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCc
Confidence 3444556688999999999999888754 233 34455555655443
No 226
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=40.39 E-value=62 Score=17.47 Aligned_cols=12 Identities=8% Similarity=0.230 Sum_probs=4.1
Q ss_pred ccHHHHHHHHHH
Q 031260 105 ITAAELAGSMAK 116 (163)
Q Consensus 105 i~~~e~~~~l~~ 116 (163)
++.++...++..
T Consensus 15 Ls~~e~~~~~~~ 26 (66)
T PF02885_consen 15 LSREEAKAAFDA 26 (66)
T ss_dssp --HHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 444444444433
No 227
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=39.63 E-value=81 Score=21.20 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=31.9
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHh
Q 031260 24 MDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFD 69 (163)
Q Consensus 24 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 69 (163)
.+.+|+++.+++.+.++.-+...+.+.+.++...- ..+...+.
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d---~K~Rf~l~ 70 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESD---DKGRFEIS 70 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcC---CCcceEec
Confidence 46799999999999888656678888888887643 34445443
No 228
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=38.85 E-value=47 Score=19.01 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=26.4
Q ss_pred hCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 117 MGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 117 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
-|..++++..+.+-..+..-....|+++|++.+....
T Consensus 42 RgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~~ 78 (82)
T PF11020_consen 42 RGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYALGV 78 (82)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3556777777777777666666779999998876543
No 229
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair]
Probab=38.59 E-value=97 Score=23.37 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=32.0
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHhCCCCC-----------HHHHHHHHHhhCCCCCCce
Q 031260 19 FMRFDMDSDGSLTQLELAALLRALGLKPT-----------GDQLHILLADMDSNGNGLV 66 (163)
Q Consensus 19 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i 66 (163)
|...+.+..+.++.++=.+++...|++.- .+++..+...++.++..-|
T Consensus 171 FDire~~tgr~Lp~eer~~l~ekYgl~~V~~fg~~~~~e~~eei~eIve~L~keGREGV 229 (382)
T COG1423 171 FDIREKNTGRPLPVEERLELAEKYGLPHVEIFGEFPADEAGEEIYEIVERLNKEGREGV 229 (382)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHcCCCceEEeeeechhHhHHHHHHHHHHHhhcCCcce
Confidence 33445667788998888888887765421 1567788888877654333
No 230
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=38.56 E-value=34 Score=23.13 Aligned_cols=46 Identities=15% Similarity=0.358 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031260 10 EQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILL 55 (163)
Q Consensus 10 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 55 (163)
..++.++++|..+|+.+--.++..++.+++..-|+-..+.-++.+.
T Consensus 52 ~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i 97 (188)
T COG2818 52 KKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATI 97 (188)
T ss_pred HhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHH
Confidence 4566799999999999999999999999999877766655554443
No 231
>PF13551 HTH_29: Winged helix-turn helix
Probab=38.24 E-value=85 Score=18.45 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH-H-HhCCCCCHHHHHHHHHh
Q 031260 7 VQSEQLKQLKDIFMRFDMDSDGSLTQLELAALL-R-ALGLKPTGDQLHILLAD 57 (163)
Q Consensus 7 l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l-~-~~~~~~~~~~~~~~~~~ 57 (163)
++++....+.+.+...-..+....+...+...+ . ..+..++...+..++..
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~ 110 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKR 110 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHH
Confidence 566666666666555433322356666666643 2 34556666666666543
No 232
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=38.18 E-value=1e+02 Score=23.18 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=24.0
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCC----------HHHHHHHHHhhCCC
Q 031260 24 MDSDGSLTQLELAALLRALGLKPT----------GDQLHILLADMDSN 61 (163)
Q Consensus 24 ~~~~g~i~~~e~~~~l~~~~~~~~----------~~~~~~~~~~~~~~ 61 (163)
.+..+.++..+..+++..++.+.. ..++..++......
T Consensus 136 ~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 183 (342)
T cd07894 136 KNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKE 183 (342)
T ss_pred cCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHC
Confidence 344567888888888888865432 24556665555443
No 233
>PF07199 DUF1411: Protein of unknown function (DUF1411); InterPro: IPR009850 This family represents a conserved region approximately 150 residues long that is sometimes repeated within some Babesia bovis proteins of unknown function.
Probab=38.04 E-value=1.3e+02 Score=20.52 Aligned_cols=66 Identities=12% Similarity=0.117 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHc
Q 031260 11 QLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALIL 76 (163)
Q Consensus 11 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 76 (163)
.+..+.+....++|.+.++-..+.+-+.|..-+--.-.+.+.+-+..++....+.-.|+.|.+.+.
T Consensus 120 rl~~iL~~It~y~P~~~~f~vseNIVk~LNK~~~i~lp~~LA~~L~~i~tgk~~~~e~~~f~d~fa 185 (194)
T PF07199_consen 120 RLSKILKHITNYDPKNPIFAVSENIVKKLNKKGTIELPEDLAQQLCQIDTGKMRGYEWEVFTDCFA 185 (194)
T ss_pred HHHHHHHHHHccCCCCcchhhHHHHHHHHcCCCCccchHHHHHHHhccccCccccchHHHHHHHHH
Confidence 333444444555555555555555555555444222223333333333333333334444444443
No 234
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.84 E-value=1.1e+02 Score=19.75 Aligned_cols=93 Identities=14% Similarity=0.233 Sum_probs=57.2
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHH--HhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHH
Q 031260 17 DIFMRFDMDSDGSLTQLELAALLR--ALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVF 94 (163)
Q Consensus 17 ~~f~~~D~~~~g~i~~~e~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f 94 (163)
-+|+.+.. +|.++..|...+.. +-.+..+..++..+..+...-+...+++-.|...+.+.+....-. +.+...+
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~--eli~~mw 109 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRL--ELIGLMW 109 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHH
Confidence 56667655 66677666554433 334567788888888877666667788888877776554432211 4455555
Q ss_pred HhhCCCCCCcccHHHHHHHHH
Q 031260 95 RSFDRDGNGHITAAELAGSMA 115 (163)
Q Consensus 95 ~~~D~~~~g~i~~~e~~~~l~ 115 (163)
.+. ..||.++.-|-.-+.+
T Consensus 110 eIa--~ADg~l~e~Ed~vi~R 128 (148)
T COG4103 110 EIA--YADGELDESEDHVIWR 128 (148)
T ss_pred HHH--HccccccHHHHHHHHH
Confidence 554 4667777766444433
No 235
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=37.62 E-value=20 Score=20.36 Aligned_cols=41 Identities=22% Similarity=0.473 Sum_probs=25.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeH
Q 031260 27 DGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEF 68 (163)
Q Consensus 27 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 68 (163)
+|.-+..+|-++|..+|-..-+..++-+.+... .+.|.+.+
T Consensus 38 S~k~~~p~fPkFLn~LGteIiEnAVefiLrSMt-R~tgF~E~ 78 (88)
T PF15144_consen 38 SGKNPEPDFPKFLNLLGTEIIENAVEFILRSMT-RSTGFMEF 78 (88)
T ss_pred cCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhh-cccCceec
Confidence 455556677777777776666666667776663 34454443
No 236
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=37.34 E-value=87 Score=19.18 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHh
Q 031260 107 AAELAGSMAKMGHPLTYGELSEMMRE 132 (163)
Q Consensus 107 ~~e~~~~l~~~~~~~~~~~~~~~~~~ 132 (163)
.+|++.++......+++++++.+++.
T Consensus 81 ~dElrai~~~~~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 81 RDELRAIFAKERYTLSPEELDEILDI 106 (112)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 34444444444444444444444443
No 237
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=37.27 E-value=40 Score=30.75 Aligned_cols=66 Identities=14% Similarity=0.247 Sum_probs=45.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCC----HHHHHHHHHhhccCCCCceeHHHHHHHHhhcc
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLT----YGELSEMMREADTNGDGVISFNEFATIMAKSA 154 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 154 (163)
+....++..+|++..|+|...++..+++.+..++. ... +.+-..+-...++.|++.+-+-.+....
T Consensus 1417 ~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r~ 1486 (1592)
T KOG2301|consen 1417 EKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKRV 1486 (1592)
T ss_pred HHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHHh
Confidence 67788999999999999999999999998755431 111 2222333344667788777776666553
No 238
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=36.86 E-value=99 Score=18.78 Aligned_cols=43 Identities=7% Similarity=0.123 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 105 ITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
+|.+++..+|...|..+.+..+..+++.+. ..+.++.+.-...
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHHHh
Confidence 999999999999999999999999988873 2466777655543
No 239
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=36.68 E-value=89 Score=18.20 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=18.7
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031260 105 ITAAELAGSMAKMGHPLTYGELSEMMREA 133 (163)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (163)
|+.++++.+.+-....+++++++.+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 45667777777666777777765554443
No 240
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=36.26 E-value=64 Score=16.41 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=31.0
Q ss_pred ccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031260 5 ETVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILL 55 (163)
Q Consensus 5 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 55 (163)
..+++.....|...|.. +.+.+..+...+...+| ++...+..=|
T Consensus 5 ~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF 48 (59)
T cd00086 5 TRFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWF 48 (59)
T ss_pred CcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHH
Confidence 35677888888888887 55788888888887775 4445554433
No 241
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=36.14 E-value=66 Score=21.79 Aligned_cols=47 Identities=30% Similarity=0.507 Sum_probs=23.8
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHH---HHHHhhCCCCCCceeHhHHHHH
Q 031260 25 DSDGSLTQLELAALLRALGLKPTGDQLH---ILLADMDSNGNGLVEFDELVAL 74 (163)
Q Consensus 25 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~ef~~~ 74 (163)
|.+|+++ .....+...++ .+.+++. .+++.+++-|-|.-+..|.+.+
T Consensus 46 D~~GyL~-~~~~eia~~l~--~~~~~v~~~l~~lQ~leP~GigAr~l~EcLll 95 (194)
T PF04963_consen 46 DDDGYLT-ESLEEIAEELG--VSEEEVEKALELLQSLEPAGIGARDLQECLLL 95 (194)
T ss_dssp TTTSTCS-S-HHHHHHHCT--S-HHHHHHHHHHHHTTSS--TTTS-TTHHHHH
T ss_pred CCCCccC-CCHHHHHHHhC--CCHHHHHHHHHHHHcCCCCccCcCCHHHHHHH
Confidence 5577776 23344444444 4444444 4455567777777787775444
No 242
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=36.11 E-value=62 Score=16.21 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHhCCCCCHHHH
Q 031260 106 TAAELAGSMAKMGHPLTYGEL 126 (163)
Q Consensus 106 ~~~e~~~~l~~~~~~~~~~~~ 126 (163)
+.+++..+.+..|+.++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 667788888888888887664
No 243
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=36.08 E-value=78 Score=20.33 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=23.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 031260 105 ITAAELAGSMAKMGHPLTYGELSEMMREADT 135 (163)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 135 (163)
.|.++++.+.......+|+++++.++..++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 5677777777666667788888888887754
No 244
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=36.08 E-value=1.4e+02 Score=20.43 Aligned_cols=84 Identities=11% Similarity=0.180 Sum_probs=46.1
Q ss_pred CCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHH-HHHHHHHhCCCCCHHHHHHHHHhhccCCCC
Q 031260 61 NGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAE-LAGSMAKMGHPLTYGELSEMMREADTNGDG 139 (163)
Q Consensus 61 ~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e-~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g 139 (163)
+-+|.|+.+++...+....... ++..+++-+ -++.|+..+ |..++..++.+. ++-++.+...+..
T Consensus 9 DFDGTITl~Ds~~~itdtf~~~------e~k~l~~~v---ls~tiS~rd~~g~mf~~i~~s~-~Eile~llk~i~I---- 74 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGPG------EWKALKDGV---LSKTISFRDGFGRMFGSIHSSL-EEILEFLLKDIKI---- 74 (220)
T ss_pred cCCCceEecchhHHHHhccCch------HHHHHHHHH---hhCceeHHHHHHHHHHhcCCCH-HHHHHHHHhhccc----
Confidence 4578888888877776544332 223333333 455666444 566665554333 3334444443322
Q ss_pred ceeHHHHHHHHhhccCccc
Q 031260 140 VISFNEFATIMAKSAADFL 158 (163)
Q Consensus 140 ~i~~~ef~~~l~~~~~~~~ 158 (163)
.-.+.+|++.+.....++.
T Consensus 75 dp~fKef~e~ike~di~fi 93 (220)
T COG4359 75 DPGFKEFVEWIKEHDIPFI 93 (220)
T ss_pred CccHHHHHHHHHHcCCCEE
Confidence 2357788888877765553
No 245
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=35.08 E-value=1.3e+02 Score=25.13 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=44.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
...+.+|+...+.+.-++..+.+... +.+++.+..+..++...++.|++..|......
T Consensus 404 ~aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~ 461 (714)
T KOG4629|consen 404 IAARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEWIVN 461 (714)
T ss_pred HHHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHHHHH
Confidence 44567888888888778888776554 47788899999998767767999999877654
No 246
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=34.92 E-value=63 Score=18.47 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=13.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHH
Q 031260 109 ELAGSMAKMGHPLTYGELSEMMR 131 (163)
Q Consensus 109 e~~~~l~~~~~~~~~~~~~~~~~ 131 (163)
|+..+|+.+|..+++++..-+-.
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHH
Confidence 46667888999999888655433
No 247
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=34.60 E-value=1.4e+02 Score=19.78 Aligned_cols=86 Identities=13% Similarity=0.068 Sum_probs=42.8
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHH
Q 031260 30 LTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAE 109 (163)
Q Consensus 30 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e 109 (163)
++..++...|.......+..++..+-..+..+. ..+. +++..-+.............+++...+.-..-.++.++.++
T Consensus 1 m~~~eL~~~Lk~~~~~~si~DL~~i~~~l~~~~-~~lp-~~Yr~~~~~~~~~~~~~~~~eIk~~~~~~~~~~~~~~d~~~ 78 (163)
T PF09888_consen 1 MTKGELLEILKEEASNYSIYDLMKIRGFLEKDI-KYLP-PEYREKYIESFFEYFFGTYHEIKNMYRSGSFIEDFEIDEEE 78 (163)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCHHH
Confidence 456677777776655666666666555443211 1121 33333333333332222223333333333333344588888
Q ss_pred HHHHHHHh
Q 031260 110 LAGSMAKM 117 (163)
Q Consensus 110 ~~~~l~~~ 117 (163)
+++++..+
T Consensus 79 ~~~~~~~i 86 (163)
T PF09888_consen 79 FKEFLNMI 86 (163)
T ss_pred HHHHHHHH
Confidence 88888664
No 248
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=34.35 E-value=64 Score=19.77 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=5.3
Q ss_pred eeHHHHHHHHhh
Q 031260 141 ISFNEFATIMAK 152 (163)
Q Consensus 141 i~~~ef~~~l~~ 152 (163)
++|++|...++.
T Consensus 99 ~s~~~~r~~ir~ 110 (118)
T PF09312_consen 99 ISYEEYREQIRK 110 (118)
T ss_dssp --HHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 455555555543
No 249
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=34.14 E-value=89 Score=18.36 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=22.1
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCC
Q 031260 102 NGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDG 139 (163)
Q Consensus 102 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g 139 (163)
.|.|+.+| ++..++ ++.+|+...-+.++.++..
T Consensus 47 ~Glis~~E---A~~rY~--Ls~eEf~~W~~av~rhge~ 79 (90)
T PF06627_consen 47 GGLISVEE---ACRRYG--LSEEEFESWQRAVDRHGEN 79 (90)
T ss_dssp CTTS-HHH---HHHCTT--SSHHHHHHHHHHCCT--TT
T ss_pred cCCCCHHH---HHHHhC--CCHHHHHHHHHHHHHHhHH
Confidence 47888776 566544 8999999988888766543
No 250
>PRK00441 argR arginine repressor; Provisional
Probab=34.00 E-value=1.2e+02 Score=19.69 Aligned_cols=40 Identities=30% Similarity=0.376 Sum_probs=32.1
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc----cCCCCc
Q 031260 101 GNGHITAAELAGSMAKMGHPLTYGELSEMMREAD----TNGDGV 140 (163)
Q Consensus 101 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d----~~~~g~ 140 (163)
..+..+.+++.+.|...|+.+++.-+..-+..+. ++++|.
T Consensus 15 ~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~lvKv~~~~G~ 58 (149)
T PRK00441 15 SKEIETQEELAEELKKMGFDVTQATVSRDIKELKLIKVLSNDGK 58 (149)
T ss_pred HcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcCcEEeECCCCC
Confidence 3578899999999999999999998888777763 355665
No 251
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=33.87 E-value=1.1e+02 Score=18.30 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH
Q 031260 107 AAELAGSMAKMGHPLTYGELSEMMR 131 (163)
Q Consensus 107 ~~e~~~~l~~~~~~~~~~~~~~~~~ 131 (163)
...+.+.|+.++.....+.+..++.
T Consensus 69 ~~~Li~aLr~~~l~~~Ad~I~~~l~ 93 (97)
T cd08316 69 YRTLIKTLRKAKLCTKADKIQDIIE 93 (97)
T ss_pred HHHHHHHHHHccchhHHHHHHHHHH
Confidence 4677788888877766666666544
No 252
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=33.82 E-value=68 Score=16.01 Aligned_cols=40 Identities=8% Similarity=0.111 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHH
Q 031260 107 AAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIM 150 (163)
Q Consensus 107 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 150 (163)
.+|....|..+| .++.++..+...... ...++.++.++.-
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 356777888888 577888888888754 3345667666543
No 253
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=33.71 E-value=48 Score=22.44 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=33.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEM 129 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 129 (163)
+.++.+|..||+++--..+.+++..++...|+--...-+.+.
T Consensus 55 e~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~ 96 (188)
T COG2818 55 EAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKAT 96 (188)
T ss_pred HHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHH
Confidence 788999999999999999999999999887765444444333
No 254
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=33.69 E-value=1.1e+02 Score=18.59 Aligned_cols=41 Identities=10% Similarity=0.177 Sum_probs=33.6
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHH
Q 031260 104 HITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATI 149 (163)
Q Consensus 104 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 149 (163)
.||.+++..+|...|..+.+..+..+.+.+. .++.++.+..
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~-----GkdIeElI~~ 56 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE-----DVNIEEAIKK 56 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHHh
Confidence 8999999999999999999999999888873 2456666543
No 255
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=33.54 E-value=2.5e+02 Score=22.37 Aligned_cols=111 Identities=22% Similarity=0.282 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHhCCCCCHHH---HHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcc
Q 031260 29 SLTQLELAALLRALGLKPTGDQ---LHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHI 105 (163)
Q Consensus 29 ~i~~~e~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 105 (163)
+.+.+|+..+|..--+.+++.+ +.-+|+.+|.++---++.+++...+.... +.-...-..| |.|
T Consensus 105 RaTvsemGPlLLsrlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~--------e~~~e~~~~y-----G~i 171 (502)
T PF05872_consen 105 RATVSEMGPLLLSRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVS--------ENAKELSAEY-----GNI 171 (502)
T ss_pred EeeHHhhchHHHHHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHH--------hhHHHHHHHc-----CCc
Q ss_pred cHHHHHHHHHHh----------CCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhc
Q 031260 106 TAAELAGSMAKM----------GHPLTYGELSEMMREADTNGDGVISFNEFATIMAKS 153 (163)
Q Consensus 106 ~~~e~~~~l~~~----------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 153 (163)
+...+-.+++.+ -+.-+.-++.. +-..+.++.|.|+.-+.-+++.++
T Consensus 172 s~aS~gaI~R~ll~LE~qG~d~FFGEPaldi~D-l~r~~~~GrG~IniL~a~~l~~~P 228 (502)
T PF05872_consen 172 SSASIGAIQRALLVLEQQGGDQFFGEPALDIED-LMRTDADGRGVINILAADKLMNSP 228 (502)
T ss_pred cHHHHHHHHHHHHHHHHcchHhhCCCccCCHHH-HhccCCCCCEEEEEEEhHhhhhCc
No 256
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=33.43 E-value=1.2e+02 Score=25.47 Aligned_cols=104 Identities=6% Similarity=0.047 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHhhCCCC-CCceeHhHHHHHHchhhhh----------HhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 031260 46 PTGDQLHILLADMDSNG-NGLVEFDELVALILPDISE----------QVLINQEQLMEVFRSFDRDGNGHITAAELAGSM 114 (163)
Q Consensus 46 ~~~~~~~~~~~~~~~~~-~~~i~~~ef~~~~~~~~~~----------~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 114 (163)
++-..+..+|...+-.+ +...+..+.+.++...... -...-...+-.+.+.||+.++|.|..-+|+-.+
T Consensus 417 v~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~ 496 (966)
T KOG4286|consen 417 LSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGI 496 (966)
T ss_pred ccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhH
Confidence 33444566666665433 2344555555555432211 001112345677899999999999999999888
Q ss_pred HHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHH
Q 031260 115 AKMGHPLTYGELSEMMREADTNGDGVISFNEFATIM 150 (163)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 150 (163)
..+.....++.+..+|......+.- ++...|-.++
T Consensus 497 i~lck~~leek~~ylF~~vA~~~sq-~~q~~l~lLL 531 (966)
T KOG4286|consen 497 ISLCKAHLEDKYRYLFKQVASSTSQ-CDQRRLGLLL 531 (966)
T ss_pred HHHhcchhHHHHHHHHHHHcCchhh-HHHHHHHHHH
Confidence 7765556677778999998655543 3344444443
No 257
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=33.15 E-value=55 Score=15.01 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=10.9
Q ss_pred CCceeHHHHHHHHhhc
Q 031260 138 DGVISFNEFATIMAKS 153 (163)
Q Consensus 138 ~g~i~~~ef~~~l~~~ 153 (163)
.|.|++++++....+.
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 4677788877776553
No 258
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=31.77 E-value=1.3e+02 Score=18.58 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=31.6
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031260 17 DIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADM 58 (163)
Q Consensus 17 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 58 (163)
..|..+-..++..++.+++.+++...|..+....+..+++.+
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L 48 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSL 48 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 344444455666788999999999998888888787777776
No 259
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.71 E-value=2e+02 Score=20.75 Aligned_cols=66 Identities=17% Similarity=0.274 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhh-CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHc
Q 031260 11 QLKQLKDIFMRF-DMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALIL 76 (163)
Q Consensus 11 ~~~~l~~~f~~~-D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 76 (163)
.+..+...|..+ |+.-+..|-.+-+..+...+|+.+..-.+--+.-.+....-+.++-++|+..+.
T Consensus 62 s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~ 128 (260)
T KOG3077|consen 62 SEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMT 128 (260)
T ss_pred cHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 344566666555 455556888889999999999988776666666666655567788888877553
No 260
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=31.63 E-value=90 Score=16.75 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=19.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHH
Q 031260 105 ITAAELAGSMAKMGHPLTYGELSEM 129 (163)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~~~~ 129 (163)
.+.+++..+.+..|+.++.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4477888888888999998888764
No 261
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=31.39 E-value=2e+02 Score=21.61 Aligned_cols=85 Identities=14% Similarity=0.185 Sum_probs=52.7
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCC-
Q 031260 23 DMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDG- 101 (163)
Q Consensus 23 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~- 101 (163)
|.|+.-++--++|.+....+.......-++-+.+.|..+-+|++=|+|...-+... ...+.++|.....|.
T Consensus 53 DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~--------nP~lae~F~lMaRDEA 124 (357)
T PLN02508 53 DYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKT--------NPVVAEIFTLMSRDEA 124 (357)
T ss_pred CccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccC--------ChHHHHHHHHhCchhH
Confidence 67777777778887655554323333446677777878888999988876654321 146677787775543
Q ss_pred --CCcccHHHHHHHHHHhCCC
Q 031260 102 --NGHITAAELAGSMAKMGHP 120 (163)
Q Consensus 102 --~g~i~~~e~~~~l~~~~~~ 120 (163)
-|.|+ ..|...|..
T Consensus 125 RHAGFlN-----kam~Df~l~ 140 (357)
T PLN02508 125 RHAGFLN-----KALSDFNLA 140 (357)
T ss_pred HHHhHHH-----HHHHHcCcc
Confidence 35443 355555443
No 262
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=30.85 E-value=1.7e+02 Score=19.71 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=31.0
Q ss_pred ceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCC
Q 031260 65 LVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHP 120 (163)
Q Consensus 65 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 120 (163)
.++.+.|+.............-......+=..+-+...-.||..+|-.++.++|+.
T Consensus 36 av~~~~Fi~~aa~~f~q~~q~~~Na~~~I~~il~~k~~~~iT~~Df~~F~A~FGP~ 91 (181)
T PF11422_consen 36 AVSLDFFIKKAANRFKQPSQSLKNAIQVIQYILTPKNTNVITIPDFYKFLARFGPE 91 (181)
T ss_dssp EEEHHHHHHHHHHHHS-TTS-HHHHHHHHHHHS--SS-SEEEHHHHHHHHHHSSSG
T ss_pred eeeHHHHHHHHHHHhccccccccchHHHHHHHHcCCCCceeeHHHHHHHHHHhCCc
Confidence 67888887777655422211111222233333444556778888888888888754
No 263
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=30.37 E-value=94 Score=17.40 Aligned_cols=16 Identities=13% Similarity=0.387 Sum_probs=10.7
Q ss_pred CCCcccHHHHHHHHHH
Q 031260 101 GNGHITAAELAGSMAK 116 (163)
Q Consensus 101 ~~g~i~~~e~~~~l~~ 116 (163)
..|.+..+||++++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 4577777777777654
No 264
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=29.84 E-value=58 Score=19.56 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=26.8
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHH---HHHHHhhccCCCCceeHHHHHHHHhhcc
Q 031260 103 GHITAAELAGSMAKMGHPLTYGEL---SEMMREADTNGDGVISFNEFATIMAKSA 154 (163)
Q Consensus 103 g~i~~~e~~~~l~~~~~~~~~~~~---~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 154 (163)
-.+|.+++..++...|. ..-+ ...++.+..+....++-++.++.+.+++
T Consensus 34 ~p~s~~eL~~~l~~~g~---~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p 85 (105)
T cd03035 34 DGLDAATLERWLAKVGW---ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHP 85 (105)
T ss_pred CCCCHHHHHHHHHHhCh---HHHHccCchHHHhCChhhhccCCHHHHHHHHHhCc
Confidence 34677777777776551 1111 1233333333223467788888887764
No 265
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=29.48 E-value=31 Score=17.81 Aligned_cols=38 Identities=21% Similarity=0.396 Sum_probs=20.5
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 031260 93 VFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMR 131 (163)
Q Consensus 93 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 131 (163)
+|..+...+++.+|..|+...+.. ..+.....++.+++
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~~-~~p~~~~~L~RimR 48 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLPT-SNPSAPPMLDRIMR 48 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTSTC-T-TTHHHHHHHHHH
T ss_pred cHHHHHHcCCCCCCHHHHHHHcCC-CCcchHHHHHHHHH
Confidence 455555555688888887776653 12223334555544
No 266
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=29.29 E-value=1.5e+02 Score=18.60 Aligned_cols=14 Identities=7% Similarity=0.109 Sum_probs=6.2
Q ss_pred CCCHHHHHHHHHhh
Q 031260 45 KPTGDQLHILLADM 58 (163)
Q Consensus 45 ~~~~~~~~~~~~~~ 58 (163)
..+.+.+..++...
T Consensus 50 eid~e~~y~l~~~~ 63 (122)
T PF06648_consen 50 EIDVEDMYNLFGAV 63 (122)
T ss_pred CCCHHHHHHHHhcc
Confidence 44444444444433
No 267
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=28.94 E-value=1.4e+02 Score=18.21 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=18.6
Q ss_pred HhhCCCCCCcccHHHHHHHHH
Q 031260 20 MRFDMDSDGSLTQLELAALLR 40 (163)
Q Consensus 20 ~~~D~~~~g~i~~~e~~~~l~ 40 (163)
+.+|+..+.+|+.+++.++.+
T Consensus 10 RLYDT~tS~YITLedi~~lV~ 30 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVR 30 (107)
T ss_pred cccCCCccceeeHHHHHHHHH
Confidence 457899999999999999887
No 268
>COG5562 Phage envelope protein [General function prediction only]
Probab=28.93 E-value=58 Score=20.76 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=28.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhhcc
Q 031260 101 GNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAKSA 154 (163)
Q Consensus 101 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 154 (163)
.+|.|.....+.+..-. ...+..-+.. ....+..|..+|++|+.-+....
T Consensus 53 ~~~~Il~~g~k~~~~V~-~~~n~~~i~~---al~~~qsGqttF~ef~~~la~AG 102 (137)
T COG5562 53 SDGVILIKGVKKVVGVA-EVFNTTLIKT---ALRRHQSGQTTFEEFCSALAEAG 102 (137)
T ss_pred cCCEEEeecccccccee-cccCHHHHHH---HHHHHhcCCccHHHHHHHHHhCC
Confidence 34555555544444221 1223333333 34456789999999999887763
No 269
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=28.81 E-value=90 Score=15.88 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=23.1
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 031260 102 NGHITAAELAGSMAKMGHPLTYGELSEMMRE 132 (163)
Q Consensus 102 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 132 (163)
+.+++.++...+...+| ++...|...|..
T Consensus 22 ~~~p~~~~~~~la~~l~--l~~~~V~~WF~n 50 (57)
T PF00046_consen 22 NPYPSKEEREELAKELG--LTERQVKNWFQN 50 (57)
T ss_dssp SSSCHHHHHHHHHHHHT--SSHHHHHHHHHH
T ss_pred hcccccccccccccccc--ccccccccCHHH
Confidence 67888888888888886 778888877753
No 270
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=28.30 E-value=30 Score=22.10 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=7.1
Q ss_pred CCCceeHHHHHHHHhh
Q 031260 137 GDGVISFNEFATIMAK 152 (163)
Q Consensus 137 ~~g~i~~~ef~~~l~~ 152 (163)
.|..|+|+.+..+|..
T Consensus 38 ~d~~iD~~~L~~yL~g 53 (140)
T PF13075_consen 38 DDQSIDFERLAPYLGG 53 (140)
T ss_pred CCceecHHHHhhhcCC
Confidence 3444444444444443
No 271
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=28.07 E-value=1.3e+02 Score=17.49 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=20.4
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031260 105 ITAAELAGSMAKMGHPLTYGELSEMMREA 133 (163)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (163)
|+.++++.+.+-....+++++++.+...+
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 67778888887777778877765554443
No 272
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=27.82 E-value=1.5e+02 Score=18.14 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=35.7
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 104 HITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 104 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
.||.+.++.++...|..+.+..++.+...+.. +++++.+.-...
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLeg-----~~idE~i~~~~~ 59 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALEG-----VDIDEVIKNAAE 59 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhcC-----CCHHHHHHHhcc
Confidence 89999999999999999999999998888742 467776655443
No 273
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=27.75 E-value=1.5e+02 Score=21.92 Aligned_cols=47 Identities=6% Similarity=0.111 Sum_probs=38.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhhc
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAK-MGHPLTYGELSEMMREAD 134 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d 134 (163)
..+..-.+.||++.+-.+.-+-++.++-. ++...++..|...|..+.
T Consensus 79 ~~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG 126 (335)
T KOG0113|consen 79 HKLERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYG 126 (335)
T ss_pred HHHHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcC
Confidence 34677788999999988888888887744 777888999999998874
No 274
>PRK04280 arginine repressor; Provisional
Probab=27.64 E-value=1.2e+02 Score=19.61 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=29.0
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc----cCCCCc
Q 031260 103 GHITAAELAGSMAKMGHPLTYGELSEMMREAD----TNGDGV 140 (163)
Q Consensus 103 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d----~~~~g~ 140 (163)
..=+.+|+.+.|...|+.+|+.-+..-++.+. ++++|.
T Consensus 17 ~I~tQeeL~~~L~~~Gi~vTQATiSRDikeL~lvKv~~~~G~ 58 (148)
T PRK04280 17 EIETQDELVDRLREEGFNVTQATVSRDIKELHLVKVPLPDGR 58 (148)
T ss_pred CCCCHHHHHHHHHHcCCCeehHHHHHHHHHcCCEEeecCCCc
Confidence 34578889999999999999888877777663 445564
No 275
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.54 E-value=1.7e+02 Score=18.65 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=25.8
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 031260 26 SDGSLTQLELAALLRALGLKPTGDQLHILLADMD 59 (163)
Q Consensus 26 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 59 (163)
.++.++.+++...+..-+...+...+.+.+..+.
T Consensus 30 ~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~ 63 (148)
T PRK09462 30 DNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFD 63 (148)
T ss_pred CCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 3567888999888888777777777777776663
No 276
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=27.23 E-value=1.1e+02 Score=18.44 Aligned_cols=15 Identities=7% Similarity=0.386 Sum_probs=6.3
Q ss_pred cccccHHHHHHHHHH
Q 031260 4 METVQSEQLKQLKDI 18 (163)
Q Consensus 4 ~~~l~~~~~~~l~~~ 18 (163)
++.|++++++++...
T Consensus 27 lk~l~~~ei~~i~~~ 41 (108)
T PF14842_consen 27 LKHLDEEEIERISRE 41 (108)
T ss_dssp HHHS-HHHHHHHHHH
T ss_pred HccCCHHHHHHHHHH
Confidence 344444444444443
No 277
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=27.17 E-value=18 Score=16.46 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=9.5
Q ss_pred HHHHhhccCCCCceeHH
Q 031260 128 EMMREADTNGDGVISFN 144 (163)
Q Consensus 128 ~~~~~~d~~~~g~i~~~ 144 (163)
.++..=|.|++-+|+.+
T Consensus 3 ~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIE 19 (30)
T ss_pred hHhhccccCCCcEEEEe
Confidence 34555566666666544
No 278
>PF15244 HSD3: Hydroxy-steroid dehydrogenase
Probab=27.08 E-value=1.2e+02 Score=23.51 Aligned_cols=30 Identities=10% Similarity=0.211 Sum_probs=19.4
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSMAKM 117 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 117 (163)
..+..+|..+=..+.|.++...++++|..+
T Consensus 382 r~Lervfe~HI~~Nk~~Lde~kMr~ll~~L 411 (419)
T PF15244_consen 382 RVLERVFERHIDQNKHRLDEEKMRHLLEQL 411 (419)
T ss_pred HHHHHHHHHHHHhhhcccCHHHHHHHHHHH
Confidence 456666766655566777777777766554
No 279
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=27.06 E-value=61 Score=18.39 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.5
Q ss_pred ccCCCCceeHHHHHHHHh
Q 031260 134 DTNGDGVISFNEFATIMA 151 (163)
Q Consensus 134 d~~~~g~i~~~ef~~~l~ 151 (163)
..|..|.|+++.|+..+.
T Consensus 12 ~~n~~G~iTl~gfLa~W~ 29 (76)
T PF08355_consen 12 VTNEKGWITLQGFLAQWS 29 (76)
T ss_pred EEcCCCcCcHHHHHHHHH
Confidence 467789999999988765
No 280
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=27.04 E-value=1.1e+02 Score=19.87 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 031260 11 QLKQLKDIFMRFDMDSDGSLTQLELAALL 39 (163)
Q Consensus 11 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l 39 (163)
.+..+.......|..+.++||.++++.++
T Consensus 67 ~Lq~L~~rL~~le~~rg~Y~TiSeLKT~v 95 (148)
T PF12486_consen 67 QLQQLADRLNQLEEQRGKYMTISELKTAV 95 (148)
T ss_pred HHHHHHHHHHHHHHhcCCceeHHHHHHHH
Confidence 45556666677777777788888887654
No 281
>PF02758 PYRIN: PAAD/DAPIN/Pyrin domain; InterPro: IPR004020 Pyrin domain was identified as putative protein-protein interaction domain at the N-terminal region of several proteins thought to function in apoptotic and inflammatory signalling pathways. Using secondary structure prediction and potential-based fold recognition methods, the PYRIN domain is predicted to be a member of the six-helix bundle death domain-fold superfamily that includes death domains (DDs), death effector domains (DEDs), and caspase recruitment domains (CARDs). Members of the death domain-fold superfamily are well established mediators of protein-protein interactions found in many proteins involved in apoptosis and inflammation, indicating further that the PYRIN domains serve a similar function. Comparison of a circular dichroism spectrum of the PYRIN domain of CARD7/DEFCAP/NAC/NALP1 with spectra of several proteins known to adopt the death domain-fold provides experimental support for the structure prediction [] It is found in interferon-inducible proteins, pyrin and myeloid cell nuclear differentiation antigen.; PDB: 2DO9_A 2YU0_A 2KN6_A 1UCP_A 2L6A_A 2KM6_A 1PN5_A 2DBG_A 3QF2_B 2HM2_Q.
Probab=26.92 E-value=54 Score=18.70 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=22.9
Q ss_pred ccccccHHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 031260 3 VMETVQSEQLKQLKDIFMRFDMDSDGSLTQLELAA 37 (163)
Q Consensus 3 ~~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~ 37 (163)
.+.+|++++...++.........+...|+..++..
T Consensus 8 ~Le~L~~~efk~FK~~L~~~~~~~~~~Ip~~~le~ 42 (83)
T PF02758_consen 8 YLEELSEEEFKRFKWLLKEPVKEGFPPIPRGELEK 42 (83)
T ss_dssp HHHTS-HHHHHHHHHHHHSTSSTTTCSSSHCHHHH
T ss_pred HHHhCCHHHHHHHHHHhcchhhcCCCCCCHHHHhh
Confidence 45677788888887777644455666777666654
No 282
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=26.77 E-value=1.9e+02 Score=18.88 Aligned_cols=114 Identities=14% Similarity=0.220 Sum_probs=65.4
Q ss_pred cccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhh----
Q 031260 6 TVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISE---- 81 (163)
Q Consensus 6 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~---- 81 (163)
.+++.....+..++.... ..|.+...++...|. ++...+..+.+.... .|.|.|..+.-........
T Consensus 3 ~~s~~~edYL~~Iy~l~~--~~~~~~~~diA~~L~-----Vsp~sVt~ml~rL~~--~GlV~~~~y~gi~LT~~G~~~a~ 73 (154)
T COG1321 3 MLSETEEDYLETIYELLE--EKGFARTKDIAERLK-----VSPPSVTEMLKRLER--LGLVEYEPYGGVTLTEKGREKAK 73 (154)
T ss_pred ccchHHHHHHHHHHHHHh--ccCcccHHHHHHHhC-----CCcHHHHHHHHHHHH--CCCeEEecCCCeEEChhhHHHHH
Confidence 456667777777777664 788999999888774 444456666666633 4556665443332211111
Q ss_pred HhhhcHHHHHHHHH-hhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031260 82 QVLINQEQLMEVFR-SFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMMREAD 134 (163)
Q Consensus 82 ~~~~~~~~~~~~f~-~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 134 (163)
........+...+. ..+ ++.++...-...+.+.++++.++.+.+.++
T Consensus 74 ~~~r~hrlle~fL~~~lg------~~~~~~~~ea~~leh~~s~~~~~rl~~~l~ 121 (154)
T COG1321 74 ELLRKHRLLERFLVDVLG------LDWEEAHEEAEGLEHALSDETAERLDELLG 121 (154)
T ss_pred HHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHhhcCCHHHHHHHHHHhC
Confidence 11111122333333 232 556666655566677788888888877775
No 283
>PF14713 DUF4464: Domain of unknown function (DUF4464)
Probab=25.80 E-value=1.5e+02 Score=20.93 Aligned_cols=52 Identities=8% Similarity=0.178 Sum_probs=28.4
Q ss_pred CceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCC-CCcccHHHHHHHHHH
Q 031260 64 GLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDG-NGHITAAELAGSMAK 116 (163)
Q Consensus 64 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~-~g~i~~~e~~~~l~~ 116 (163)
..-+|+||+.-......-.=..+.+.++.+++ +.-.+ .+.++.+||.+.-..
T Consensus 8 ~F~tYEdYLdS~it~~Dl~YL~~~~~ar~Lve-LGyr~~g~vl~~eeF~~rk~~ 60 (233)
T PF14713_consen 8 QFETYEDYLDSFITPEDLRYLEDEELARQLVE-LGYRGTGEVLSREEFEARKKA 60 (233)
T ss_pred ccCcHHHHHHccCcHhHhhhcCCHHHHHHHHH-cCCCCCCcccCHHHHHHHHHH
Confidence 45578888877654433222233344455555 32333 357889998654443
No 284
>KOG4776 consensus Uncharacterized conserved protein BCNT [Function unknown]
Probab=25.26 E-value=96 Score=21.67 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=20.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHH
Q 031260 88 EQLMEVFRSFDRDGNGHITAAELAGSM 114 (163)
Q Consensus 88 ~~~~~~f~~~D~~~~g~i~~~e~~~~l 114 (163)
..|..-...+.+.++|||.+.+|.+-.
T Consensus 188 ~gi~dEL~ihNrgKdGYlerqeFL~R~ 214 (235)
T KOG4776|consen 188 KGIEDELDIHNRGKDGYLERQEFLERA 214 (235)
T ss_pred cchHHHHHHhcccccchhHHHHHHHHh
Confidence 456667778878899999998876654
No 285
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=25.03 E-value=1.3e+02 Score=17.46 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=32.5
Q ss_pred ceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031260 65 LVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKMGHPLTYGELSEMM 130 (163)
Q Consensus 65 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 130 (163)
.+++.+++..=. ....... ..=..+.+.+ +=|+.+..+|...|..+| ++.+++..++
T Consensus 30 ~it~~dL~~~GL--~g~~~s~--~rR~~l~~~L---~iGy~N~KqllkrLN~f~--it~~e~~~al 86 (87)
T PF13331_consen 30 EITWEDLIELGL--IGGPDSK--ERREKLGEYL---GIGYGNAKQLLKRLNMFG--ITREEFEEAL 86 (87)
T ss_pred cCCHHHHHHCCC--CCCccHH--HHHHHHHHHH---CCCCCCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 488888766521 1110110 1112334444 448888888888888876 6777766543
No 286
>PF14473 RD3: RD3 protein
Probab=24.72 E-value=2e+02 Score=18.41 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=28.7
Q ss_pred cccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031260 6 TVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADM 58 (163)
Q Consensus 6 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 58 (163)
.+++.+...|..++...-|...|.+ ..-|.+++... .+...++-.+|+.+
T Consensus 71 ~i~~~ErlqLE~lCski~P~~~g~v-I~RFRellae~--e~~~~Ev~~iFr~v 120 (133)
T PF14473_consen 71 QISPGERLQLEDLCSKIPPCECGPV-ISRFRELLAEN--EPEVWEVPRIFRSV 120 (133)
T ss_pred CCCHHHHHHHHHHHhcCChhhhHHH-HHHHHHHHHcc--CCCHHHHHHHHHHH
Confidence 4667777777777777666555543 23344444332 55666666666543
No 287
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=24.43 E-value=3.8e+02 Score=21.64 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=50.2
Q ss_pred cccccHHHHHHHHHHHHhhC-CCCCCcccHHHHHHHHHHhCCCCCHHH---HHHHHHhhCCCCCCceeHhHHHHHHc
Q 031260 4 METVQSEQLKQLKDIFMRFD-MDSDGSLTQLELAALLRALGLKPTGDQ---LHILLADMDSNGNGLVEFDELVALIL 76 (163)
Q Consensus 4 ~~~l~~~~~~~l~~~f~~~D-~~~~g~i~~~e~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~ef~~~~~ 76 (163)
.+++-++....|-++|...- |-.+--|+.+.+.++-.-+|..++.++ +..+++.| +.|.|+=++...-+.
T Consensus 80 ~~qfg~ea~avldr~fyl~glprp~vg~~~~~~~~i~~~~~~~~~~~~~e~l~~~lh~y---kkg~~~gddl~~e~~ 153 (529)
T PRK06253 80 YKQFGPEAMAVLDRCFYLAGLPRPNVGISDEKIEQIEEILGRDLSEEKIESLREVLHSY---KKGEIDGDDLVLEIS 153 (529)
T ss_pred HHhhCHHHHHHHHHhhhhcCCCCCCCCcCHHHHHHHHHHhCCCCChhHHHHHHHHHHHh---hcCCCccchhHHHHH
Confidence 45778888889999998875 345667888888888877888888777 55566666 345566566555443
No 288
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=24.36 E-value=1.9e+02 Score=18.00 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=20.1
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031260 102 NGHITAAELAGSMAKMGHPLTYGELSEMMREA 133 (163)
Q Consensus 102 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (163)
.|.++.+++.+-+..-+..++..++..++..+
T Consensus 26 ~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 26 SGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred cCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 46677777766665545566766666655554
No 289
>PRK03968 DNA primase large subunit; Validated
Probab=23.99 E-value=3.2e+02 Score=20.95 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=32.1
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHch
Q 031260 24 MDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILP 77 (163)
Q Consensus 24 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 77 (163)
..+.+.++..+...+-+..+..+..++...+... ..+.|.+|+.++..
T Consensus 116 ~~~~~e~p~~d~~~l~~~~~~el~~e~~~~~~~~------y~i~~~df~~l~gs 163 (399)
T PRK03968 116 VVNAIEIPEKDRKILERVRGRELPPEELEDLLPE------YKIKWKDLLDLIGS 163 (399)
T ss_pred ccccccccchhhhhhhhhcccccCHHHHHHHhhh------ccccHHHHHHhcCC
Confidence 3456677777777777777777777777666543 34677777776543
No 290
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=23.87 E-value=2.7e+02 Score=19.71 Aligned_cols=54 Identities=11% Similarity=0.128 Sum_probs=41.3
Q ss_pred ccccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC
Q 031260 3 VMETVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSN 61 (163)
Q Consensus 3 ~~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~ 61 (163)
++-.+++++..++...+..++.-....++..+...-|..+ +.+++.+|.....+
T Consensus 141 l~Idl~~~~~q~v~~~i~~l~~~r~~~~~~~~~~~~L~~~-----~~dl~~lF~~vkkD 194 (233)
T TIGR02878 141 LTIDVPEDQVQRVDSHLSYLENFRFQQRSEDEKEEQLSLM-----RGDLKALFDGVKED 194 (233)
T ss_pred eeeecCHHHHHHHHHHHHHHHhhhhhccChHHHHHHHHHH-----HHHHHHHHcccccC
Confidence 3446889999999998888887777788888888777766 56678888776544
No 291
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=23.72 E-value=1.2e+02 Score=15.56 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=23.3
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCC
Q 031260 101 GNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNG 137 (163)
Q Consensus 101 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 137 (163)
..|.|+..+|+..+. ++-..+-.+++.+|..+
T Consensus 7 ~~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 7 KNGEITVAEFRDLLG-----LSRKYAIPLLEYLDREG 38 (50)
T ss_dssp TTSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHTT
T ss_pred cCCcCcHHHHHHHHC-----ccHHHHHHHHHHHhccC
Confidence 368899999999883 57677777777776543
No 292
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=23.54 E-value=3.6e+02 Score=20.98 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=43.8
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHH---HHHchhhhhHhhhcHHHHHHHHHhhCCCCCC
Q 031260 27 DGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELV---ALILPDISEQVLINQEQLMEVFRSFDRDGNG 103 (163)
Q Consensus 27 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~---~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g 103 (163)
.-.++...|.++|.......+.-+.-.+-...|-..++.|+-=||= .++.+. ..+.+-++.+..-.-|
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqPw---------~tllkNWq~LavtHPG 258 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPW---------KTLLKNWQTLAVTHPG 258 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhccH---------HHHHHhhhhhhccCCc
Confidence 3466677777777765433333444444455555566666544442 222211 2333334444445555
Q ss_pred c---ccHHHHHHHHHHh
Q 031260 104 H---ITAAELAGSMAKM 117 (163)
Q Consensus 104 ~---i~~~e~~~~l~~~ 117 (163)
| +|.+|++..|..+
T Consensus 259 YmAFLTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 259 YMAFLTYDEVKARLQKY 275 (563)
T ss_pred eeEEeeHHHHHHHHHHH
Confidence 4 7888888877764
No 293
>PRK05066 arginine repressor; Provisional
Probab=23.40 E-value=1.9e+02 Score=18.94 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=30.0
Q ss_pred CCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhhc----cCCCCc
Q 031260 102 NGHITAAELAGSMAKMGHP-LTYGELSEMMREAD----TNGDGV 140 (163)
Q Consensus 102 ~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d----~~~~g~ 140 (163)
...=|.+|+.+.|...|+. +|+.-+..-++.+. ++++|.
T Consensus 21 ~~I~tQeeL~~~L~~~Gi~~vTQATiSRDikeL~lvKv~~~~G~ 64 (156)
T PRK05066 21 EKFGSQGEIVTALQEQGFDNINQSKVSRMLTKFGAVRTRNAKME 64 (156)
T ss_pred CCCCCHHHHHHHHHHCCCCeecHHHHHHHHHHcCCEEeeCCCCC
Confidence 3456788999999999999 89988877777763 445664
No 294
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=23.35 E-value=3.4e+02 Score=20.62 Aligned_cols=96 Identities=16% Similarity=0.199 Sum_probs=57.7
Q ss_pred HHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh---------CC--C
Q 031260 52 HILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAAELAGSMAKM---------GH--P 120 (163)
Q Consensus 52 ~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~---------~~--~ 120 (163)
..++..+|+.+.|.++--.-...+...+..... +.++.+|... .+..|.+..-.+.+++... |. .
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~gk~~---dklryIfs~i-sds~gim~~i~~~~fl~evlslpT~v~e~psfg 188 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGGKIK---DKLRYIFSLI-SDSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFG 188 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccchHH---HHHHHHHHHH-ccchHHHHHHHHHHHHHHHHcCCchhhcCCCcc
Confidence 445566788887876643333333333333333 7889999998 4677888777777777653 11 1
Q ss_pred CCHHHHHHHHHhhccCCCCceeHHHHHHHHhhccCc
Q 031260 121 LTYGELSEMMREADTNGDGVISFNEFATIMAKSAAD 156 (163)
Q Consensus 121 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 156 (163)
.++.-++..|.. +.++..+.|+..+...++.
T Consensus 189 ~te~~a~~cf~q-----qrKv~Ln~fldtl~sdp~p 219 (434)
T KOG4301|consen 189 YTELSARLCFLQ-----QRKVELNQFLDTLMSDPPP 219 (434)
T ss_pred hHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCc
Confidence 233334444433 4468888888887766543
No 295
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=23.33 E-value=1.7e+02 Score=17.33 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=20.6
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031260 104 HITAAELAGSMAKMGHPLTYGELSEMMREA 133 (163)
Q Consensus 104 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (163)
.|+.++++.+.+-.-..+++++++.+...+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l 31 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQL 31 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 477788888777766777877766554443
No 296
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.16 E-value=2.1e+02 Score=18.24 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031260 108 AELAGSMAKMGHPLTYGELSEMMREAD 134 (163)
Q Consensus 108 ~e~~~~l~~~~~~~~~~~~~~~~~~~d 134 (163)
.++..++...+++++..|+.++|+.-+
T Consensus 102 ~Dm~~I~~~~~f~vS~pElsAlfR~~~ 128 (155)
T COG4807 102 DDMLAILTEQQFRVSMPELSALFRAPD 128 (155)
T ss_pred chHHHHHhccCcccccHHHHHHHhCCC
Confidence 457889999999999999999999853
No 297
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=23.16 E-value=1.8e+02 Score=17.52 Aligned_cols=45 Identities=9% Similarity=0.026 Sum_probs=33.8
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHH
Q 031260 101 GNGHITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIM 150 (163)
Q Consensus 101 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 150 (163)
..-.+|.+++..++...|..+.+..+..+.+.+. ..++.+++.-.
T Consensus 14 ~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~-----gk~i~elIa~~ 58 (103)
T cd05831 14 DGIEITADNINALLKAAGVNVEPYWPGLFAKALE-----GKDIKDLLSNV 58 (103)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc-----CCCHHHHhhcc
Confidence 4447999999999999999888888887777762 24566666443
No 298
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=23.15 E-value=2e+02 Score=17.83 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=14.2
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHH
Q 031260 124 GELSEMMREADTNGDGVISFNEFATIM 150 (163)
Q Consensus 124 ~~~~~~~~~~d~~~~g~i~~~ef~~~l 150 (163)
.....+++.+ .+|.|+.++=++.|
T Consensus 89 ~~~~~IL~~L---~~GeIs~eeA~~~L 112 (113)
T PF09862_consen 89 DERKEILDKL---EKGEISVEEALEIL 112 (113)
T ss_pred hhHHHHHHHH---HcCCCCHHHHHHHh
Confidence 3455566665 36667777666554
No 299
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=22.98 E-value=2.2e+02 Score=18.37 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=29.2
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031260 100 DGNGHITAAELAGSMAKMGHPLTYGELSEMMREAD 134 (163)
Q Consensus 100 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 134 (163)
......|.+|+.+.|+..|+.++..-+...++.+.
T Consensus 12 ~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 12 TEEKISTQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred HcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 34567899999999999999999988888888764
No 300
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=22.98 E-value=2.4e+02 Score=18.83 Aligned_cols=42 Identities=12% Similarity=0.302 Sum_probs=34.1
Q ss_pred cccccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC
Q 031260 4 METVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKP 46 (163)
Q Consensus 4 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~ 46 (163)
.+.++++-+.++.++|..+-. +++-+..+++..++..+..+.
T Consensus 5 f~ki~~EiEDEILe~Ya~~~~-~~~D~~l~~Lp~~f~~L~IP~ 46 (170)
T PF08730_consen 5 FEKIPPEIEDEILEAYAEYTE-DEQDMTLKDLPNYFEDLQIPK 46 (170)
T ss_pred cccCChHHHHHHHHHHHHhcC-CccceeHHHHHHHHHHcCCCh
Confidence 356888889999999988844 377888899999999987654
No 301
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=22.94 E-value=1.4e+02 Score=16.06 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=6.7
Q ss_pred ccHHHHHHHHHHhCC
Q 031260 105 ITAAELAGSMAKMGH 119 (163)
Q Consensus 105 i~~~e~~~~l~~~~~ 119 (163)
|..+++...|+..|.
T Consensus 25 I~L~el~~~L~~~g~ 39 (64)
T PF09494_consen 25 INLEELHAWLKASGI 39 (64)
T ss_pred ccHHHHHHHHHHcCC
Confidence 444444444443333
No 302
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=22.85 E-value=4.1e+02 Score=21.38 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=49.0
Q ss_pred cccccHHHHHHHHHHHHhhC-CCCCCcccHHHHHHHHHHhCCCCCHHHHH---HHHHhhCCCCCCceeHhHHHHHHch
Q 031260 4 METVQSEQLKQLKDIFMRFD-MDSDGSLTQLELAALLRALGLKPTGDQLH---ILLADMDSNGNGLVEFDELVALILP 77 (163)
Q Consensus 4 ~~~l~~~~~~~l~~~f~~~D-~~~~g~i~~~e~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~ef~~~~~~ 77 (163)
.+++-++....|-++|...- |-.|--|+.+.+.++-. +|..++.++.+ .+++.| +.|.|+=++...-+..
T Consensus 80 ~kqfg~ea~avldrcfyl~glprp~vgis~~~~~~i~~-~g~~~~~~~~e~lr~~lh~y---kkg~idgddl~~eia~ 153 (533)
T TIGR00470 80 YKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKIEIIEN-LGIDIDDEKKERLREVFHLY---KKGAIDGDDLVFEIAK 153 (533)
T ss_pred HHhhCHHHHHHHHHhhhhcCCCCCCcCcCHHHHHHHHH-hCCCCChhHHHHHHHHHHHh---hcCCCccchhHHHHHH
Confidence 45778888889999998875 34566788888887776 88888877654 466666 4566666666555543
No 303
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=22.84 E-value=1.8e+02 Score=17.24 Aligned_cols=75 Identities=15% Similarity=0.261 Sum_probs=41.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCCCCcccHH
Q 031260 29 SLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDGNGHITAA 108 (163)
Q Consensus 29 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ 108 (163)
.++..+...+.+.+| +++.+|..+-.... + + .+....++..+-......-|..
T Consensus 16 ~V~~~~Wk~laR~LG--Lse~~I~~i~~~~~----~--~-------------------~eq~~qmL~~W~~~~G~~At~~ 68 (96)
T cd08315 16 EVPFDSWNRLMRQLG--LSENEIDVAKANER----V--T-------------------REQLYQMLLTWVNKTGRKASVN 68 (96)
T ss_pred HCCHHHHHHHHHHcC--CCHHHHHHHHHHCC----C--C-------------------HHHHHHHHHHHHHhhCCCcHHH
Confidence 455566666666665 45555555543321 1 0 1333444444421122245678
Q ss_pred HHHHHHHHhCCCCCHHHHHHHH
Q 031260 109 ELAGSMAKMGHPLTYGELSEMM 130 (163)
Q Consensus 109 e~~~~l~~~~~~~~~~~~~~~~ 130 (163)
.+.+.|..++.....+.++..+
T Consensus 69 ~L~~aL~~~~~~~~Ae~I~~~l 90 (96)
T cd08315 69 TLLDALEAIGLRLAKESIQDEL 90 (96)
T ss_pred HHHHHHHHcccccHHHHHHHHH
Confidence 8888888888777766666543
No 304
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=22.83 E-value=67 Score=21.81 Aligned_cols=46 Identities=11% Similarity=0.313 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031260 10 EQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILL 55 (163)
Q Consensus 10 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 55 (163)
..+..++++|..+|+..=-..+.+++.+++..-+.-.+..-+..+.
T Consensus 51 ~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi 96 (187)
T PRK10353 51 KKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAII 96 (187)
T ss_pred HHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHH
Confidence 4566789999999998888889999999998666555555554443
No 305
>PHA02335 hypothetical protein
Probab=22.74 E-value=1.9e+02 Score=17.63 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=17.0
Q ss_pred CCceeHhHHHHHHchhhhhHhhhcHHHHHHHHHhhCCCC
Q 031260 63 NGLVEFDELVALILPDISEQVLINQEQLMEVFRSFDRDG 101 (163)
Q Consensus 63 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 101 (163)
...|++++|..-+.+. .-+.+.|+.|.+.+
T Consensus 22 p~sVt~ddf~~DlkRi---------~yIkrllKRy~~~~ 51 (118)
T PHA02335 22 PQSVTYDDFEEDLKRF---------KYIKRLFKRYLNTG 51 (118)
T ss_pred cccccHHHHHHHHHHH---------HHHHHHHHhhcCCC
Confidence 4457777776655433 45566666665444
No 306
>KOG1931 consensus Putative transmembrane protein [General function prediction only]
Probab=22.30 E-value=30 Score=29.85 Aligned_cols=42 Identities=5% Similarity=-0.058 Sum_probs=19.9
Q ss_pred HHHHHhCCCCCHHHHHHHHHhhCCCCCCc--eeHhHHHHHHchh
Q 031260 37 ALLRALGLKPTGDQLHILLADMDSNGNGL--VEFDELVALILPD 78 (163)
Q Consensus 37 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~ef~~~~~~~ 78 (163)
.++.+++...+.....+..+.......+. =.|.+|.+.+...
T Consensus 138 sv~dKir~DF~tkq~drCv~l~~~~k~~~~~e~Wn~f~qki~~~ 181 (1156)
T KOG1931|consen 138 SVMDKIRKDFPTKQTDRCVSLDRPPKERQEAEFWNQFLQKIRAL 181 (1156)
T ss_pred hHHHHHhcccCCCCcceeEEeecCCCCCccchHHHHHHHHHHHH
Confidence 34444444444444444333333322222 3788887776543
No 307
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=22.07 E-value=2e+02 Score=18.16 Aligned_cols=49 Identities=14% Similarity=0.310 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhcc-CCCCceeHHHHHHHHhhc
Q 031260 105 ITAAELAGSMAKMGHPLTYGELSEMMREADT-NGDGVISFNEFATIMAKS 153 (163)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l~~~ 153 (163)
|...=+.+..+..|..+++.+++..+...-. ..+|..+-+.|.+++...
T Consensus 84 I~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~f~~~g~~~~~~f~~~L~~~ 133 (154)
T PF13624_consen 84 IDQKLLLQEAKKLGISVSDAEVDDAIKQIPAFQENGKFDKEAFEEFLKQQ 133 (154)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHH--HHHHH----HHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 3333344444566888888888877776310 013666777777777654
No 308
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=22.03 E-value=41 Score=18.38 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=13.0
Q ss_pred CCceeHHHHHHHHhhccCccc
Q 031260 138 DGVISFNEFATIMAKSAADFL 158 (163)
Q Consensus 138 ~g~i~~~ef~~~l~~~~~~~~ 158 (163)
.|.|+++.|++..+..+.+.+
T Consensus 37 ~g~I~~d~~lK~vR~LaReQF 57 (65)
T PF09454_consen 37 RGSIDLDTFLKQVRSLAREQF 57 (65)
T ss_dssp TTSS-HHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 566888888777776554433
No 309
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=21.70 E-value=88 Score=16.77 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=10.0
Q ss_pred HhhCCCCCCcccHHHHHH
Q 031260 20 MRFDMDSDGSLTQLELAA 37 (163)
Q Consensus 20 ~~~D~~~~g~i~~~e~~~ 37 (163)
..++.+++|+|+..-+..
T Consensus 22 ~~~~~~~~g~Vpi~~i~~ 39 (61)
T PF05383_consen 22 SQMDSNPDGWVPISTILS 39 (61)
T ss_dssp HHHCTTTTTBEEHHHHTT
T ss_pred HHHHhcCCCcEeHHHHHc
Confidence 344555566666655543
No 310
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=21.69 E-value=2.8e+02 Score=19.07 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=20.1
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHhCCCC
Q 031260 93 VFRSFDRDGNGHITAAELAGSMAKMGHPL 121 (163)
Q Consensus 93 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~ 121 (163)
+-+.+. +|-.+.+.+|+++.|+.+|...
T Consensus 60 ~q~~lG-~gfly~~~eEL~e~Lk~~g~Rf 87 (210)
T COG1059 60 AQNELG-DGFLYLSEEELREKLKEVGYRF 87 (210)
T ss_pred HHHHhc-cccccCCHHHHHHHHHHhcchh
Confidence 334443 6666789999999999887754
No 311
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=21.61 E-value=1.7e+02 Score=16.69 Aligned_cols=14 Identities=0% Similarity=0.226 Sum_probs=9.0
Q ss_pred ceeHHHHHHHHhhc
Q 031260 140 VISFNEFATIMAKS 153 (163)
Q Consensus 140 ~i~~~ef~~~l~~~ 153 (163)
.-+++..++.|+..
T Consensus 57 ~At~~~L~~aLr~~ 70 (80)
T cd08313 57 YATLQHLLSVLRDM 70 (80)
T ss_pred cchHHHHHHHHHHc
Confidence 46777777666654
No 312
>PF12987 DUF3871: Domain of unknown function, B. Theta Gene description (DUF3871); InterPro: IPR024353 This entry represents proteins of unknown function found primarily in Bacteroides species. The B. thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=21.58 E-value=3.4e+02 Score=20.08 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=14.8
Q ss_pred HHHHHHHhhCCC---------CCCcccHHHHHHHHHH
Q 031260 14 QLKDIFMRFDMD---------SDGSLTQLELAALLRA 41 (163)
Q Consensus 14 ~l~~~f~~~D~~---------~~g~i~~~e~~~~l~~ 41 (163)
...++|..+++. ++-.|+..+|.+++..
T Consensus 193 ~~leLf~~yn~~khl~lm~~L~~t~ltE~QFaQiiGR 229 (323)
T PF12987_consen 193 KVLELFQNYNPAKHLHLMQTLGDTSLTEHQFAQIIGR 229 (323)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccCcccHHHHHHHHhH
Confidence 344555555443 3446666666666553
No 313
>PRK09389 (R)-citramalate synthase; Provisional
Probab=21.22 E-value=3e+02 Score=21.91 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhcc--CCCCceeHHHHHHHHhhc
Q 031260 108 AELAGSMAKMGHPLTYGELSEMMREADT--NGDGVISFNEFATIMAKS 153 (163)
Q Consensus 108 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~--~~~g~i~~~ef~~~l~~~ 153 (163)
.-++..++.+|..++++++..++..+-. +....++-+|+..++...
T Consensus 321 ~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~ 368 (488)
T PRK09389 321 AALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDV 368 (488)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 3467778888999999888888877633 334479999998888654
No 314
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=21.10 E-value=1.9e+02 Score=17.02 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=8.9
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhh
Q 031260 110 LAGSMAKMGHPLTYGELSEMMREA 133 (163)
Q Consensus 110 ~~~~l~~~~~~~~~~~~~~~~~~~ 133 (163)
++.+|+..|..++.+.+..++..+
T Consensus 14 Lk~lLk~rGi~v~~~~L~~f~~~i 37 (90)
T PF02337_consen 14 LKHLLKERGIRVKKKDLINFLSFI 37 (90)
T ss_dssp HHHHHHCCT----HHHHHHHHHHH
T ss_pred HHHHHHHcCeeecHHHHHHHHHHH
Confidence 333444444445555544444443
No 315
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=21.05 E-value=2.6e+02 Score=18.74 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=18.0
Q ss_pred CCCCCcccHHHHHHHHHHhCCC
Q 031260 99 RDGNGHITAAELAGSMAKMGHP 120 (163)
Q Consensus 99 ~~~~g~i~~~e~~~~l~~~~~~ 120 (163)
.||+|.+.+-=+.-+|...|.+
T Consensus 126 ~DGNGRt~Rll~~l~L~~~g~~ 147 (186)
T TIGR02613 126 PNGNGRHARLATDLLLEQQGYS 147 (186)
T ss_pred CCCCcHHHHHHHHHHHHHCCCC
Confidence 5899999998888888888753
No 316
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=20.86 E-value=2.8e+02 Score=19.53 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=31.4
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031260 99 RDGNGHITAAELAGSMAKMGHPLTYGELSEMMREA 133 (163)
Q Consensus 99 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (163)
-+++|.+...++..-+..+...++..|+.++-+.+
T Consensus 162 G~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 162 GNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRL 196 (224)
T ss_pred cCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHH
Confidence 57899999999999999999999999988886665
No 317
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.86 E-value=97 Score=14.07 Aligned_cols=11 Identities=9% Similarity=0.271 Sum_probs=5.6
Q ss_pred ccHHHHHHHHH
Q 031260 105 ITAAELAGSMA 115 (163)
Q Consensus 105 i~~~e~~~~l~ 115 (163)
|+.++++++|.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 66666666654
No 318
>TIGR02679 conserved hypothetical protein TIGR02679. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=20.67 E-value=3.8e+02 Score=20.65 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=33.7
Q ss_pred cccccHHHHHHHHHHHHhhCC-CCCCcccHHHHHHHHHHhCCCCCHHH
Q 031260 4 METVQSEQLKQLKDIFMRFDM-DSDGSLTQLELAALLRALGLKPTGDQ 50 (163)
Q Consensus 4 ~~~l~~~~~~~l~~~f~~~D~-~~~g~i~~~e~~~~l~~~~~~~~~~~ 50 (163)
+.++++++.+.+...|..-=. +.+-.|+..+|.+.++..++..+-.+
T Consensus 9 L~~ls~~Er~al~~llGr~~~~~~~~~V~l~~~~~aL~~s~f~~~l~e 56 (385)
T TIGR02679 9 LQSLSAEQREALAALLGRDSRRDRSMSVPLADLDAALTRAGFGRGLRE 56 (385)
T ss_pred eCCCCHHHHHHHHHHhCCCCCCCCceEeEHHHHHHHHHhccccCCHHH
Confidence 567899999999998874322 23356899999999997765554433
No 319
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=20.64 E-value=46 Score=26.19 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=20.6
Q ss_pred CCCceeHHHHHHHHhhccCccccc
Q 031260 137 GDGVISFNEFATIMAKSAADFLGL 160 (163)
Q Consensus 137 ~~g~i~~~ef~~~l~~~~~~~~~~ 160 (163)
+.|+|+|..+-.|++..+..|+-+
T Consensus 414 GaGRVtFsnqqsYi~AIsarFvql 437 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISARFVQL 437 (520)
T ss_pred CcceeeecccHHHHHHHhhheEEE
Confidence 679999999999999988877654
No 320
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=20.53 E-value=1.1e+02 Score=14.00 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=11.2
Q ss_pred cccHHHHHHHHHHhCCCC
Q 031260 104 HITAAELAGSMAKMGHPL 121 (163)
Q Consensus 104 ~i~~~e~~~~l~~~~~~~ 121 (163)
.++..++++.++..|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 355667777777666543
No 321
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=20.39 E-value=2.2e+02 Score=17.40 Aligned_cols=43 Identities=14% Similarity=0.181 Sum_probs=27.0
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhhccCCCCceeHHHHHHHHhh
Q 031260 110 LAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAK 152 (163)
Q Consensus 110 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 152 (163)
+..++.-+...++.+|-+.+.+.++.-.+|.|++..-+.+++.
T Consensus 55 l~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~ 97 (117)
T PF08349_consen 55 LQHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKH 97 (117)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 4444444445567777666666666666777777766666654
No 322
>PRK14074 rpsF 30S ribosomal protein S6; Provisional
Probab=20.34 E-value=3.3e+02 Score=19.43 Aligned_cols=69 Identities=9% Similarity=0.183 Sum_probs=47.9
Q ss_pred cccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHhHHHHHHch
Q 031260 6 TVQSEQLKQLKDIFMRFDMDSDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILP 77 (163)
Q Consensus 6 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 77 (163)
.|++.+...+.+.|...=.+..|.+-..|..-++..-....+.++...-.... ...-|.|.+|+.-+..
T Consensus 13 ~ls~~q~e~l~e~~~~~l~~~~~~v~~~e~wG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 81 (257)
T PRK14074 13 GLLQQEVEEMVQELAVLLKNIKADVMFQQIKGILEKGNDKLTKQELEVRAEDI---KESLIAYSDFLEDLTK 81 (257)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCeeehhhhhhhhhcccchhhHHHHHhhHHHH---HHHHHHHHHHHHHHHH
Confidence 57888888888888887788888888888888877655566666654433222 1234677777766643
Done!