BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031261
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 53 DPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREE 111
D Y+TL + RGAS+ E+K+A+R+ AL+YHPD + +F I EAYD++ + + E
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE 62
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 38/55 (69%)
Query: 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMN 106
DPY+ L + R AS++++KKA+++LA ++HPD + +F I++AY+++ N
Sbjct: 17 FDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSN 71
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 53 DPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMN 106
D Y+ L + RGAS+ ++KKA+R+LAL++HPD F I AY ++ N
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSN 61
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 55 YKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMN-NFREE 111
Y L + + ASE ++KKAF +LA++YHPD + + +F I EAY+ + + N R+E
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKE 67
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNN-CGVQFHLINEAYDMVMNN 107
D Y+ L + + A E E++KA+++LA++YHPD +G+ +F I EAY+++ ++
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS 59
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNN-CGVQFHLINEAYDMVMNN 107
D Y+ L + + A E E++KA+++LA++YHPD +G+ +F I EAY+++ ++
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS 59
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNN-CGVQFHLINEAYDMVMNN 107
D Y+ L + + A E E++KA+++LA++YHPD +G+ +F I EAY+++ ++
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS 59
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 55 YKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREE 111
Y L ++ A++ E+KKA+R+LAL+YHPD + N G +F I++AY+++ + + E
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPD--KNPNEGEKFKQISQAYEVLSDAKKRE 63
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 53 DPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMNNFREE 111
D Y+ L + R AS+ E+KKA+ QLA +YHPD + + +F + EAY+++ + + +
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 55 YKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNN--CGVQFHLINEAYDMVMNN 107
Y+ L +Q AS ++KKA+R+LAL++HPD N +F L++EAY+++ ++
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDS 66
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 55 YKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMN 106
Y L ++ AS++E+KKA+R++AL++HPD + + QF I++AY+++ +
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPD--KNPDGAEQFKQISQAYEVLSD 60
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 55 YKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNN--CGVQFHLINEAYDMVMNNFREE 111
Y+ L + R AS ++KKA+R+ ALQ+HPD N +F + EAY+++ + + E
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNN--CGVQFHLINEAYDMVMN 106
++D Y+ L + R AS +KKA+R+LAL++HPD N +F + EAY+++ +
Sbjct: 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSD 65
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 53 DPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEP 112
D + L ++ GAS EV KA+R+LA+ HPD C F + A ++ N + P
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87
Query: 113 NE 114
+
Sbjct: 88 SS 89
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFR 109
+ D Y L +Q +K A+R+LA +YHPDV + N+ +F + EA++++ + R
Sbjct: 27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQR 85
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMN 106
+ + Y L + + AS E+++AF++LAL+ HPD N N F IN AY+++ +
Sbjct: 1 IQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD 57
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 55 YKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMN 106
Y L + + AS E+++AF++LAL+ HPD N N F IN AY+++ +
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD 76
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 55 YKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMV 104
Y L + A+E E+KK +R+ AL+YHPD G+ +F I+EA++++
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT--EKFKEISEAFEIL 58
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 53 DPYKTLRIQRGASESEVKKAFRQLALQYHPD 83
D YK L ++R A + E+ KA+R+LALQ+HPD
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 53 DPYKTLRIQRGASESEVKKAFRQLALQYHPD 83
D YK L ++R A + E+ KA+R+LALQ+HPD
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 55 YKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMN 106
Y L + + A+ ++KK++R+LAL+YHPD N +F IN A+ ++ +
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTD 72
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 69 VKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFR 109
+K A+R+LA +YHPDV + + +F + EA++++ + R
Sbjct: 22 IKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQR 62
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 66 ESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFR 109
+S ++K +RQL Q+HPD+ + Q +N+AY + + R
Sbjct: 32 QSRLRKEYRQLQAQHHPDMAQQG--SEQSSTLNQAYHTLKDPLR 73
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 66 ESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFR 109
+S ++K +RQL Q+HPD+ + Q +N+AY + + R
Sbjct: 24 QSRLRKEYRQLQAQHHPDMAQQG--SEQSSTLNQAYHTLKDPLR 65
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 28.1 bits (61), Expect = 2.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 93 QFHLINEAYDMVMNNFREEPNEPEIMY 119
+F +I EAY +NNFR E MY
Sbjct: 629 RFEIIKEAYMRSLNNFRAEQPHQHAMY 655
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 93 QFHLINEAYDMVMNNFREEPNEPEIMY 119
+F +I EAY +NNFR E MY
Sbjct: 629 RFEIIKEAYMRSLNNFRAEQPHQHAMY 655
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 93 QFHLINEAYDMVMNNFREEPNEPEIMY 119
+F +I EAY +NNFR E MY
Sbjct: 629 RFEIIKEAYMRSLNNFRAEQPHQHAMY 655
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 93 QFHLINEAYDMVMNNFREEPNEPEIMY 119
+F +I EAY +NNFR E MY
Sbjct: 658 RFEIIKEAYMRSLNNFRAEQPHQHAMY 684
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 93 QFHLINEAYDMVMNNFREEPNEPEIMY 119
+F +I EAY +NNFR E MY
Sbjct: 629 RFEIIKEAYMRSLNNFRAEQPHQHAMY 655
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 93 QFHLINEAYDMVMNNFREEPNEPEIMY 119
+F +I EAY +NNFR E MY
Sbjct: 658 RFEIIKEAYMRSLNNFRAEQPHQHAMY 684
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 93 QFHLINEAYDMVMNNFREEPNEPEIMY 119
+F +I EAY +NNFR E MY
Sbjct: 617 RFEIIKEAYMRSLNNFRAEQPHQHAMY 643
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 93 QFHLINEAYDMVMNNFREEPNEPEIMY 119
+F +I EAY +NNFR E MY
Sbjct: 616 RFEIIKEAYMRSLNNFRAEQPHQHAMY 642
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 93 QFHLINEAYDMVMNNFREEPNEPEIMY 119
+F +I EAY +NNFR E MY
Sbjct: 658 RFEIIKEAYMRSLNNFRAEQPHQHAMY 684
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 93 QFHLINEAYDMVMNNFREEPNEPEIMY 119
+F +I EAY +NNFR E MY
Sbjct: 629 RFEIIKEAYMRSLNNFRAEQPHQHAMY 655
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 93 QFHLINEAYDMVMNNFREEPNEPEIMY 119
+F +I EAY +NNFR E MY
Sbjct: 629 RFEIIKEAYMRSLNNFRAEQPHQHAMY 655
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 67 SEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGI 126
S K R+L ++H R + + + + D+V+N N PE ++Q ++G +
Sbjct: 61 SVTKPLDRELIARFH---LRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSV 117
Query: 127 DE 128
E
Sbjct: 118 PE 119
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 67 SEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGI 126
S K R+L ++H R + + + + D+V+N N PE ++Q ++G +
Sbjct: 61 SVTKPLDRELIARFH---LRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSV 117
Query: 127 DE 128
E
Sbjct: 118 PE 119
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 55 YKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-------NCGVQFHLINEAYDMVMN 106
Y L A+ S++K+ +++L L YHPD + C +F I++A+ ++ N
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
>pdb|1JSX|A Chain A, Crystal Structure Of The Escherichia Coli
Glucose-Inhibited Division Protein B (Gidb)
Length = 207
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 92 VQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEPFRGMND 135
VQ L E + V + E P+EP P+DG I F +ND
Sbjct: 108 VQHELKLENIEPVQSRVEEFPSEP-----PFDGVISRAFASLND 146
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 53 DPYKTLRIQRGASESEVKKAFRQLALQYHPD 83
D Y L A+ S++K+ +++L L YHPD
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPD 41
>pdb|1W0R|A Chain A, Solution Structure Of Dimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0R|B Chain B, Solution Structure Of Dimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0S|A Chain A, Solution Structure Of Trimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0S|B Chain B, Solution Structure Of Trimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0S|C Chain C, Solution Structure Of Trimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
Length = 442
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 117 IMYQPYDGGIDEPFRGMNDPDWDLWEEW 144
YQ GG+ +P R P W LW W
Sbjct: 35 FAYQKRSGGLCQPCR---SPRWSLWSTW 59
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 26.2 bits (56), Expect = 8.2, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 74 RQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDE 128
R+L ++H R + + + + D+V+N N PE ++Q ++G + E
Sbjct: 68 RELIARFH---LRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPE 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,681,875
Number of Sequences: 62578
Number of extensions: 186444
Number of successful extensions: 375
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 50
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)