Query 031261
Match_columns 163
No_of_seqs 222 out of 1516
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 11:35:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 1.2E-28 2.6E-33 208.9 9.5 92 51-148 3-102 (371)
2 KOG0713 Molecular chaperone (D 99.9 9E-25 2E-29 181.8 7.4 93 48-147 12-109 (336)
3 KOG0712 Molecular chaperone (D 99.9 1.9E-23 4.2E-28 175.2 7.9 93 51-153 3-95 (337)
4 PRK14288 chaperone protein Dna 99.9 1.2E-22 2.7E-27 173.6 8.2 69 52-126 3-72 (369)
5 PRK14296 chaperone protein Dna 99.9 1.7E-22 3.8E-27 172.9 8.7 70 51-126 3-72 (372)
6 PRK14287 chaperone protein Dna 99.9 6.5E-22 1.4E-26 169.3 8.5 91 51-147 3-98 (371)
7 PRK14286 chaperone protein Dna 99.9 7.5E-22 1.6E-26 169.0 8.0 90 52-147 4-106 (372)
8 PRK14298 chaperone protein Dna 99.9 1.2E-21 2.7E-26 167.9 8.8 91 51-147 4-102 (377)
9 PRK14276 chaperone protein Dna 99.9 1.4E-21 3E-26 167.7 8.9 91 51-147 3-106 (380)
10 PRK14278 chaperone protein Dna 99.9 2.3E-21 4.9E-26 166.3 9.3 90 52-147 3-98 (378)
11 PRK14280 chaperone protein Dna 99.8 2E-21 4.3E-26 166.5 8.7 90 52-147 4-103 (376)
12 PTZ00037 DnaJ_C chaperone prot 99.8 2.6E-21 5.6E-26 167.9 7.7 87 51-147 27-113 (421)
13 PRK14299 chaperone protein Dna 99.8 5.3E-21 1.1E-25 158.9 8.9 91 51-147 3-108 (291)
14 PRK14297 chaperone protein Dna 99.8 5.5E-21 1.2E-25 164.0 9.0 90 52-147 4-106 (380)
15 PRK14285 chaperone protein Dna 99.8 5.6E-21 1.2E-25 163.2 8.9 90 52-147 3-106 (365)
16 PRK14294 chaperone protein Dna 99.8 8E-21 1.7E-25 162.3 8.8 90 51-146 3-101 (366)
17 PRK14301 chaperone protein Dna 99.8 1.9E-20 4.2E-25 160.3 9.0 90 51-146 3-102 (373)
18 PRK14283 chaperone protein Dna 99.8 1E-20 2.2E-25 162.2 7.3 70 51-126 4-73 (378)
19 PRK14282 chaperone protein Dna 99.8 1.9E-20 4.1E-25 160.2 8.4 70 51-126 3-74 (369)
20 TIGR02349 DnaJ_bact chaperone 99.8 3E-20 6.5E-25 158.0 9.0 89 53-147 1-101 (354)
21 PRK10767 chaperone protein Dna 99.8 2.6E-20 5.7E-25 159.3 8.6 91 51-147 3-103 (371)
22 PRK14291 chaperone protein Dna 99.8 2.8E-20 6E-25 159.8 8.6 69 52-126 3-71 (382)
23 PRK14292 chaperone protein Dna 99.8 3.8E-20 8.3E-25 158.3 9.2 91 52-148 2-98 (371)
24 PRK14277 chaperone protein Dna 99.8 3.5E-20 7.6E-25 159.3 8.0 70 51-126 4-74 (386)
25 PRK14290 chaperone protein Dna 99.8 1E-19 2.2E-24 155.4 9.3 90 52-147 3-102 (365)
26 PRK14279 chaperone protein Dna 99.8 3.3E-20 7.1E-25 159.8 6.0 68 51-124 8-76 (392)
27 PRK14281 chaperone protein Dna 99.8 1.1E-19 2.3E-24 156.9 8.7 69 52-126 3-72 (397)
28 PRK14284 chaperone protein Dna 99.8 9.4E-20 2E-24 156.9 7.9 69 52-126 1-70 (391)
29 PRK14300 chaperone protein Dna 99.8 1E-19 2.2E-24 155.9 8.0 69 52-126 3-71 (372)
30 PRK14293 chaperone protein Dna 99.8 1.6E-19 3.5E-24 154.6 8.9 90 52-147 3-97 (374)
31 KOG0715 Molecular chaperone (D 99.8 1.5E-19 3.2E-24 150.1 7.4 89 50-147 41-129 (288)
32 PRK10266 curved DNA-binding pr 99.8 2.6E-19 5.5E-24 149.7 8.4 90 52-147 4-104 (306)
33 PF00226 DnaJ: DnaJ domain; I 99.8 4.9E-19 1.1E-23 115.3 4.9 62 53-120 1-64 (64)
34 PRK14289 chaperone protein Dna 99.8 1.4E-18 3.1E-23 149.4 8.0 70 51-126 4-74 (386)
35 PRK14295 chaperone protein Dna 99.8 8.5E-19 1.8E-23 150.9 6.6 70 51-126 8-82 (389)
36 KOG0716 Molecular chaperone (D 99.8 6.2E-19 1.3E-23 143.2 5.2 71 50-126 29-100 (279)
37 PTZ00341 Ring-infected erythro 99.7 1.9E-18 4.1E-23 159.5 7.9 92 50-150 571-662 (1136)
38 KOG0691 Molecular chaperone (D 99.7 1.1E-18 2.4E-23 144.8 5.8 89 51-147 4-93 (296)
39 KOG0719 Molecular chaperone (D 99.7 8.7E-18 1.9E-22 134.1 6.4 91 48-145 10-103 (264)
40 KOG0718 Molecular chaperone (D 99.7 5.5E-18 1.2E-22 146.1 5.1 72 49-126 6-81 (546)
41 KOG0717 Molecular chaperone (D 99.7 1.6E-17 3.4E-22 143.1 5.4 71 48-124 4-76 (508)
42 cd06257 DnaJ DnaJ domain or J- 99.7 4.6E-17 9.9E-22 102.6 6.1 54 53-106 1-55 (55)
43 PHA03102 Small T antigen; Revi 99.7 4.7E-17 1E-21 123.6 7.2 86 51-148 4-91 (153)
44 smart00271 DnaJ DnaJ molecular 99.7 4.3E-17 9.2E-22 104.6 5.9 56 52-107 1-58 (60)
45 KOG0721 Molecular chaperone (D 99.7 4.2E-17 9.1E-22 128.9 6.2 73 48-126 95-168 (230)
46 TIGR03835 termin_org_DnaJ term 99.7 7.9E-17 1.7E-21 146.1 8.1 89 52-147 2-90 (871)
47 KOG0624 dsRNA-activated protei 99.7 8.7E-17 1.9E-21 135.5 6.0 104 49-160 391-504 (504)
48 COG2214 CbpA DnaJ-class molecu 99.6 1.3E-15 2.7E-20 118.0 6.1 67 50-122 4-72 (237)
49 PRK05014 hscB co-chaperone Hsc 99.5 3.9E-14 8.5E-19 109.7 6.7 64 52-121 1-72 (171)
50 KOG0722 Molecular chaperone (D 99.5 1.8E-14 3.9E-19 116.7 2.8 74 48-127 29-102 (329)
51 PRK01356 hscB co-chaperone Hsc 99.5 8.3E-14 1.8E-18 107.4 5.7 64 52-121 2-71 (166)
52 KOG0720 Molecular chaperone (D 99.5 5.5E-14 1.2E-18 121.3 4.9 67 50-122 233-299 (490)
53 KOG0550 Molecular chaperone (D 99.4 1.7E-13 3.6E-18 117.5 6.3 102 48-155 369-477 (486)
54 PRK03578 hscB co-chaperone Hsc 99.4 2.9E-13 6.3E-18 105.3 7.1 69 51-125 5-83 (176)
55 PRK00294 hscB co-chaperone Hsc 99.4 3.2E-13 6.9E-18 104.8 6.9 66 50-121 2-75 (173)
56 PRK09430 djlA Dna-J like membr 99.4 2.6E-13 5.6E-18 111.8 5.3 59 49-107 197-263 (267)
57 PTZ00100 DnaJ chaperone protei 99.4 2.8E-13 6.1E-18 98.4 4.9 53 50-105 63-115 (116)
58 KOG0714 Molecular chaperone (D 99.4 3.2E-13 7E-18 109.2 4.5 70 51-126 2-73 (306)
59 PHA02624 large T antigen; Prov 99.4 1.2E-12 2.6E-17 117.5 7.5 63 49-120 8-72 (647)
60 COG5269 ZUO1 Ribosome-associat 99.2 1.4E-11 3.1E-16 100.9 6.0 94 50-149 41-142 (379)
61 COG5407 SEC63 Preprotein trans 99.2 1.3E-11 2.7E-16 106.9 3.9 73 48-126 94-172 (610)
62 KOG1150 Predicted molecular ch 99.2 2.1E-11 4.5E-16 95.9 4.5 59 50-108 51-111 (250)
63 PRK01773 hscB co-chaperone Hsc 99.2 5.4E-11 1.2E-15 92.3 6.7 63 52-120 2-72 (173)
64 TIGR00714 hscB Fe-S protein as 99.0 9.2E-10 2E-14 84.2 6.0 53 63-121 2-60 (157)
65 KOG0568 Molecular chaperone (D 98.6 5.7E-08 1.2E-12 78.4 4.7 59 49-107 44-103 (342)
66 KOG1789 Endocytosis protein RM 98.5 8.8E-08 1.9E-12 90.3 5.2 57 48-106 1277-1337(2235)
67 KOG0723 Molecular chaperone (D 98.3 7.9E-07 1.7E-11 63.4 3.5 56 49-107 53-108 (112)
68 KOG3192 Mitochondrial J-type c 97.7 3.3E-05 7.1E-10 58.8 3.8 69 50-124 6-84 (168)
69 COG1076 DjlA DnaJ-domain-conta 97.3 0.00013 2.8E-09 56.5 2.3 53 52-104 113-173 (174)
70 KOG0431 Auxilin-like protein a 97.1 0.00055 1.2E-08 60.5 4.6 49 56-104 392-448 (453)
71 COG1076 DjlA DnaJ-domain-conta 96.4 0.0022 4.7E-08 49.7 2.1 63 53-121 2-72 (174)
72 PF03656 Pam16: Pam16; InterP 95.5 0.026 5.6E-07 41.8 4.5 56 49-107 55-110 (127)
73 PF11833 DUF3353: Protein of u 93.0 0.14 3.1E-06 40.4 4.0 43 61-110 1-44 (194)
74 PF13446 RPT: A repeated domai 91.6 0.34 7.4E-06 30.9 3.8 47 51-107 4-50 (62)
75 KOG0724 Zuotin and related mol 88.2 0.62 1.3E-05 39.3 3.8 44 64-107 4-52 (335)
76 PF14687 DUF4460: Domain of un 85.5 2.4 5.1E-05 30.6 5.1 45 63-107 5-54 (112)
77 PF10041 DUF2277: Uncharacteri 75.2 22 0.00048 24.0 6.6 59 52-110 3-65 (78)
78 COG5552 Uncharacterized conser 71.8 14 0.00031 24.9 5.0 43 52-94 3-45 (88)
79 KOG3442 Uncharacterized conser 56.6 28 0.00061 25.7 4.6 38 49-86 56-93 (132)
80 PF07709 SRR: Seven Residue Re 55.7 7.2 0.00016 17.6 0.9 13 93-105 2-14 (14)
81 PF15178 TOM_sub5: Mitochondri 28.2 95 0.002 19.0 3.0 24 55-78 2-25 (51)
82 PF12434 Malate_DH: Malate deh 28.0 73 0.0016 17.2 2.2 17 66-82 10-26 (28)
83 cd00084 HMG-box High Mobility 26.1 1.4E+02 0.003 17.9 3.8 34 70-107 12-45 (66)
84 PF07739 TipAS: TipAS antibiot 25.4 81 0.0018 21.7 2.8 51 59-123 51-103 (118)
85 cd01780 PLC_epsilon_RA Ubiquit 25.1 1.3E+02 0.0028 21.1 3.6 34 51-84 10-43 (93)
86 KOG2320 RAS effector RIN1 (con 24.7 90 0.0019 29.0 3.5 41 59-107 396-436 (651)
87 KOG3960 Myogenic helix-loop-he 24.2 57 0.0012 27.1 2.0 16 91-106 127-142 (284)
88 cd01390 HMGB-UBF_HMG-box HMGB- 23.9 1.6E+02 0.0034 17.8 3.7 32 72-107 14-45 (66)
89 PF12725 DUF3810: Protein of u 23.3 2.8E+02 0.006 23.5 6.1 57 51-107 81-149 (318)
90 COG4401 AroH Chorismate mutase 22.8 1E+02 0.0022 22.4 2.9 56 29-85 64-120 (125)
91 PF08447 PAS_3: PAS fold; Int 21.1 25 0.00054 22.6 -0.6 28 52-83 6-34 (91)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-28 Score=208.86 Aligned_cols=92 Identities=33% Similarity=0.533 Sum_probs=80.6
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCC-
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCR-GNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDE- 128 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~-~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~- 128 (163)
.+|||+||||+++|+.+|||+|||+|+++||||+|+ ...|+++|++|++||+||+|+ +||++||+||....+
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~------eKRa~YD~fG~~~~~~ 76 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDP------EKRAAYDQFGHAGFKA 76 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCH------HHHHHhhccCcccccc
Confidence 579999999999999999999999999999999999 557999999999999999999 899999999997754
Q ss_pred -CCC-----CCCCcchHHHHHhhcCC
Q 031261 129 -PFR-----GMNDPDWDLWEEWMGWE 148 (163)
Q Consensus 129 -~~~-----~~~~~~~~~~~~~f~~~ 148 (163)
++. ++++++.++|++||+++
T Consensus 77 gg~gg~g~~~fgg~~~DIF~~~FgGg 102 (371)
T COG0484 77 GGFGGFGFGGFGGDFGDIFEDFFGGG 102 (371)
T ss_pred CCcCCCCcCCCCCCHHHHHHHhhcCC
Confidence 222 23335789999999744
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9e-25 Score=181.84 Aligned_cols=93 Identities=30% Similarity=0.464 Sum_probs=79.0
Q ss_pred CCCcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCc-HHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCC
Q 031261 48 SSSVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNN-CGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGI 126 (163)
Q Consensus 48 ~~~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~-a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~ 126 (163)
....+|||+||||+.+|+..|||+|||+|++++|||+|++++ |.+.|++|+.||+||+|| ++|..||.||+..
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDp------ekRk~YD~~GEeg 85 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDP------EKRKHYDTYGEEG 85 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCH------HHHHHHHhhhHhh
Confidence 556799999999999999999999999999999999999886 899999999999999999 8999999999866
Q ss_pred CCCC----CCCCCcchHHHHHhhcC
Q 031261 127 DEPF----RGMNDPDWDLWEEWMGW 147 (163)
Q Consensus 127 ~~~~----~~~~~~~~~~~~~~f~~ 147 (163)
.+.. .+.+.. .++|..||+.
T Consensus 86 L~~~~~~~~~g~~~-~~~f~~~f~d 109 (336)
T KOG0713|consen 86 LKDENKDGEGGGGG-NDIFSAFFGD 109 (336)
T ss_pred hcccccccccCCcc-cchHHHhhcc
Confidence 4432 221211 4788888763
No 3
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.9e-23 Score=175.18 Aligned_cols=93 Identities=32% Similarity=0.518 Sum_probs=78.4
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCCC
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEPF 130 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~~ 130 (163)
...+|+||||+++|+.+|||++||+|+++||||||++ +.++|++|..||+||+|| ++|.+||+||+...+..
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~------ekr~~yD~~g~~~~~~g 74 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDP------EKREIYDQYGEEGLQGG 74 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCH------HHHHHHHhhhhhhhccc
Confidence 4689999999999999999999999999999999987 679999999999999999 89999999998776544
Q ss_pred CCCCCcchHHHHHhhcCCCCCCC
Q 031261 131 RGMNDPDWDLWEEWMGWEGAGIR 153 (163)
Q Consensus 131 ~~~~~~~~~~~~~~f~~~~~~~~ 153 (163)
.+.+++.. |++||+.++.+.+
T Consensus 75 ~~~~g~~~--f~~~F~~g~~~~~ 95 (337)
T KOG0712|consen 75 GGGGGFGG--FSQFFGFGGNGGR 95 (337)
T ss_pred CCCCCCcc--HHHhccCCCcCcc
Confidence 43333322 9999985554433
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=1.2e-22 Score=173.62 Aligned_cols=69 Identities=32% Similarity=0.659 Sum_probs=64.5
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-CcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCC
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRG-NNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGI 126 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~-~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~ 126 (163)
.|||+||||+++|+.+|||+|||+|+++||||+++. ..++++|++|++||+||+|+ ++|..||+||+..
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~------~kR~~YD~~G~~~ 72 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDE------KKRALYDRYGKKG 72 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccH------HHHHHHHHhcccc
Confidence 699999999999999999999999999999999974 45889999999999999999 8999999999754
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=1.7e-22 Score=172.88 Aligned_cols=70 Identities=31% Similarity=0.559 Sum_probs=65.9
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCC
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGI 126 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~ 126 (163)
..|||+||||+++|+.+|||+|||+|+++||||+++.+.++++|++|++||+||+|+ ++|..||+||+..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~------~KR~~YD~~G~~~ 72 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDK------DKRKQYDQFGHAA 72 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCH------HHhhhhhhccchh
Confidence 369999999999999999999999999999999998777999999999999999999 8999999999753
No 6
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=6.5e-22 Score=169.27 Aligned_cols=91 Identities=32% Similarity=0.529 Sum_probs=76.3
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCC-
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEP- 129 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~- 129 (163)
..|||+||||+++|+.+|||+|||+|+++||||+++.+.++++|++|++||++|+|+ ++|..||+||+....+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~------~kR~~YD~~G~~~~~~~ 76 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDP------QKKAHYDQFGHTDPNQG 76 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcH------hHHHHHHhhCCcccccc
Confidence 369999999999999999999999999999999998767889999999999999999 8999999999754321
Q ss_pred CC--CCC--CcchHHHHHhhcC
Q 031261 130 FR--GMN--DPDWDLWEEWMGW 147 (163)
Q Consensus 130 ~~--~~~--~~~~~~~~~~f~~ 147 (163)
+. +.. +.+.++|+.||++
T Consensus 77 ~~~~~~~~f~~~~d~f~~~fgg 98 (371)
T PRK14287 77 FGGGGAGDFGGFSDIFDMFFGG 98 (371)
T ss_pred cCCCCCccccchHHHHHhhhcc
Confidence 10 101 2245899999974
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=7.5e-22 Score=168.95 Aligned_cols=90 Identities=26% Similarity=0.497 Sum_probs=74.9
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCC--
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDE-- 128 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~-~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~-- 128 (163)
.|||+||||+++|+.+|||+|||+|+++||||+++.+ .++++|++|++||+||+|+ ++|..||+||+....
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~------~kR~~YD~~G~~g~~~~ 77 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDP------KKRQAYDQFGKAGVNAG 77 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccH------HHHHHHHHhCchhhccc
Confidence 6999999999999999999999999999999999754 5889999999999999999 799999999975422
Q ss_pred --CCC--C---C---CCcchHHHHHhhcC
Q 031261 129 --PFR--G---M---NDPDWDLWEEWMGW 147 (163)
Q Consensus 129 --~~~--~---~---~~~~~~~~~~~f~~ 147 (163)
++. + + .+++.++|++||++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~d~f~~ffgg 106 (372)
T PRK14286 78 AGGFGQGAYTDFSDIFGDFGDIFGDFFGG 106 (372)
T ss_pred cCCCCCCCcccccccccchhhHHHHhhCC
Confidence 111 0 1 12345899999975
No 8
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.2e-21 Score=167.89 Aligned_cols=91 Identities=31% Similarity=0.509 Sum_probs=76.3
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCC-
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEP- 129 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~- 129 (163)
..|||+||||+++|+.+|||++||+|+++||||+++...++++|++|++||++|+|+ ++|..||+||......
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~------~kR~~YD~~G~~g~~~~ 77 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDA------EKRAQYDRFGHAGIDNQ 77 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcch------HhhhhhhhcCccccccc
Confidence 469999999999999999999999999999999998777889999999999999999 7999999999754221
Q ss_pred ------CCC-CCCcchHHHHHhhcC
Q 031261 130 ------FRG-MNDPDWDLWEEWMGW 147 (163)
Q Consensus 130 ------~~~-~~~~~~~~~~~~f~~ 147 (163)
+.+ ..+.+.++|++||++
T Consensus 78 ~~~~~~~~~~~~~~~~d~f~~~Fgg 102 (377)
T PRK14298 78 YSAEDIFRGADFGGFGDIFEMFFGG 102 (377)
T ss_pred cCcccccccCCcCcchhhhHhhhcC
Confidence 111 012345889999974
No 9
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.4e-21 Score=167.72 Aligned_cols=91 Identities=25% Similarity=0.501 Sum_probs=76.5
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCC-
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEP- 129 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~- 129 (163)
..|||+||||+++|+.+|||+|||+|+++||||+++...++++|++|++||++|+|+ ++|..||+||+....+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~------~kR~~YD~~G~~~~~~~ 76 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDP------QKRAAYDQYGAAGANGG 76 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCH------hhhhhHhhcCCccccCC
Confidence 369999999999999999999999999999999998777899999999999999999 8999999999754221
Q ss_pred C-------CCC-----CCcchHHHHHhhcC
Q 031261 130 F-------RGM-----NDPDWDLWEEWMGW 147 (163)
Q Consensus 130 ~-------~~~-----~~~~~~~~~~~f~~ 147 (163)
+ .++ ...+.++|+.||++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~d~f~~~fgg 106 (380)
T PRK14276 77 FGGGAGGFGGFDGSGGFGGFEDIFSSFFGG 106 (380)
T ss_pred CCCCCCCCCCccccccccchhhHHHHHhCc
Confidence 1 111 12345899999974
No 10
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2.3e-21 Score=166.32 Aligned_cols=90 Identities=28% Similarity=0.436 Sum_probs=75.2
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCCC-
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEPF- 130 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~~- 130 (163)
.|||+||||+++|+.+|||+|||+|+++||||+++...++++|++|++||+||+|+ ++|..||+||.....+.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~------~~r~~YD~~G~~~~~~~~ 76 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDP------EKRRIVDLGGDPLESAGG 76 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchh------hhhhhhhccCCccccccC
Confidence 59999999999999999999999999999999998666889999999999999999 79999999997422110
Q ss_pred --CCCC---CcchHHHHHhhcC
Q 031261 131 --RGMN---DPDWDLWEEWMGW 147 (163)
Q Consensus 131 --~~~~---~~~~~~~~~~f~~ 147 (163)
.+++ +.+.++|+.||++
T Consensus 77 ~~~g~~~~f~~~~d~f~~ffgg 98 (378)
T PRK14278 77 GGGGFGGGFGGLGDVFEAFFGG 98 (378)
T ss_pred CCCCCCcCcCchhHHHHHHhCC
Confidence 0111 2345899999974
No 11
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2e-21 Score=166.54 Aligned_cols=90 Identities=28% Similarity=0.560 Sum_probs=76.0
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCC-C
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEP-F 130 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~-~ 130 (163)
.|||+||||+++|+.+|||+|||+|+++||||+++.+.++++|++|++||++|+|+ ++|..||+||+....+ +
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~------~kr~~yD~~G~~~~~~~~ 77 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDD------QKRAQYDQFGHAGPNQGF 77 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccH------hHHHHHHhcCccccccCc
Confidence 69999999999999999999999999999999998777999999999999999999 7999999999754221 1
Q ss_pred C--C-----CCC--cchHHHHHhhcC
Q 031261 131 R--G-----MND--PDWDLWEEWMGW 147 (163)
Q Consensus 131 ~--~-----~~~--~~~~~~~~~f~~ 147 (163)
. + +.. .+.++|++||++
T Consensus 78 ~~~~~~~~~~~~~~~~~d~f~~~fgg 103 (376)
T PRK14280 78 GGGGFGGGDFGGGFGFEDIFSSFFGG 103 (376)
T ss_pred CCCCCCCCCccccccchhhHHHHhCC
Confidence 1 1 111 345889999974
No 12
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.84 E-value=2.6e-21 Score=167.88 Aligned_cols=87 Identities=28% Similarity=0.406 Sum_probs=73.7
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCCC
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEPF 130 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~~ 130 (163)
..|||+||||+++|+.+|||+|||+|+++||||++++ .++|++|++||+||+|+ ++|..||.||....++.
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~------~kR~~YD~~G~~~~~~~ 97 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDP------EKRKIYDEYGEEGLEGG 97 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccH------HHHHHHhhhcchhcccC
Confidence 5799999999999999999999999999999999853 58999999999999999 89999999987643321
Q ss_pred CCCCCcchHHHHHhhcC
Q 031261 131 RGMNDPDWDLWEEWMGW 147 (163)
Q Consensus 131 ~~~~~~~~~~~~~~f~~ 147 (163)
.+ ...+.++|+.||++
T Consensus 98 ~~-~~d~~d~f~~~Fgg 113 (421)
T PTZ00037 98 EQ-PADASDLFDLIFGG 113 (421)
T ss_pred CC-CcchhhhHHHhhcc
Confidence 11 22346899999974
No 13
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.3e-21 Score=158.92 Aligned_cols=91 Identities=31% Similarity=0.486 Sum_probs=75.7
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCC--
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDE-- 128 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~-- 128 (163)
..|||+||||+++|+.+|||+|||+|++++|||+++.+.++++|++|++||++|+|+ ++|..||+||.....
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~------~kr~~yD~~g~~~~~~~ 76 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDP------EKRRIYDTYGTTAASAG 76 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCH------HHHHHHHhcCCcccccc
Confidence 369999999999999999999999999999999998777899999999999999999 799999999975311
Q ss_pred --CC-------CCC----CCcchHHHHHhhcC
Q 031261 129 --PF-------RGM----NDPDWDLWEEWMGW 147 (163)
Q Consensus 129 --~~-------~~~----~~~~~~~~~~~f~~ 147 (163)
+. .++ .+.+.++|++||++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fgg 108 (291)
T PRK14299 77 WQGPPPGPPGGGDFSGFNVGDFSDFFQQLFGG 108 (291)
T ss_pred ccCCCCCCCCCCCccccCcCCHHHHHHHHhCC
Confidence 10 111 12345889999974
No 14
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.5e-21 Score=163.99 Aligned_cols=90 Identities=34% Similarity=0.639 Sum_probs=75.1
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCC-
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEP- 129 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~-~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~- 129 (163)
.|||+||||+++|+.+|||+|||+|+++||||+++.+ .++++|++|++||++|+|+ ++|..||+||+.+...
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~------~~r~~yD~~G~~~~~~~ 77 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDP------QKKAQYDQFGTADFNGA 77 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCH------hhhCchhhcCccccccc
Confidence 6999999999999999999999999999999999754 4789999999999999999 7999999999754321
Q ss_pred -------CCCCC----CcchHHHHHhhcC
Q 031261 130 -------FRGMN----DPDWDLWEEWMGW 147 (163)
Q Consensus 130 -------~~~~~----~~~~~~~~~~f~~ 147 (163)
+.++. .++.++|++||++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~d~f~~~fgg 106 (380)
T PRK14297 78 GGFGSGGFGGFDFSDMGGFGDIFDSFFGG 106 (380)
T ss_pred CCCCCCCCCCcCcccccchhHHHHHHhcc
Confidence 11111 1245899999974
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.6e-21 Score=163.24 Aligned_cols=90 Identities=30% Similarity=0.592 Sum_probs=74.6
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCC-
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEP- 129 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~-~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~- 129 (163)
.|||+||||+++|+.+|||+|||+|+++||||+++.+ .+.++|++|++||++|+|+ ++|..||+||+....+
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~------~kr~~yd~~g~~~~~~~ 76 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDD------NKRAQYDRFGHTAFEGG 76 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCc------chhHHHHhcCcchhccC
Confidence 6999999999999999999999999999999998754 4789999999999999998 7999999999754221
Q ss_pred -----C-CCC---C---CcchHHHHHhhcC
Q 031261 130 -----F-RGM---N---DPDWDLWEEWMGW 147 (163)
Q Consensus 130 -----~-~~~---~---~~~~~~~~~~f~~ 147 (163)
+ .++ . ..+.++|+.||++
T Consensus 77 ~~~~~~~~g~~~~~~~~~~~~d~f~~~fgg 106 (365)
T PRK14285 77 GGFEGFSGGFSGFSDIFEDFGDIFDSFFTG 106 (365)
T ss_pred CCccccCCCccccccccccHHHHHHHhhcC
Confidence 1 011 1 1245889999974
No 16
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=8e-21 Score=162.29 Aligned_cols=90 Identities=32% Similarity=0.575 Sum_probs=74.8
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCC-
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDE- 128 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~-~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~- 128 (163)
..|||+||||+++|+.+|||+|||+|+++||||+++.+ .++++|++|++||+||+|+ .+|..||+||+....
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~------~~r~~yD~~G~~g~~~ 76 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDP------KKRGIYDQYGHEGLSG 76 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccH------HHHHHHHhhccccccC
Confidence 46999999999999999999999999999999999754 5789999999999999999 799999999975422
Q ss_pred -CC---CCCC---CcchHHHHHhhc
Q 031261 129 -PF---RGMN---DPDWDLWEEWMG 146 (163)
Q Consensus 129 -~~---~~~~---~~~~~~~~~~f~ 146 (163)
++ .++. +.+.++|+.||+
T Consensus 77 ~~~~~~~~~~~~~~~~~d~f~~~fg 101 (366)
T PRK14294 77 TGFSGFSGFDDIFSSFGDIFEDFFG 101 (366)
T ss_pred CCCCCcCccccchhhhhhhHHHhhc
Confidence 11 1111 234578899997
No 17
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.9e-20 Score=160.31 Aligned_cols=90 Identities=34% Similarity=0.552 Sum_probs=73.5
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCC
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEP 129 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~-~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~ 129 (163)
..|||+||||+++|+.++||+|||+|++++|||+++.+ .++++|++|++||+||+|+ .+|..||.||.....+
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~------~kr~~yD~~g~~g~~~ 76 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDA------EKRARYDRFGHAGVNG 76 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcch------hhhhhhhhcccccccc
Confidence 36999999999999999999999999999999999754 4788999999999999999 7999999999754221
Q ss_pred ---CCCCC------CcchHHHHHhhc
Q 031261 130 ---FRGMN------DPDWDLWEEWMG 146 (163)
Q Consensus 130 ---~~~~~------~~~~~~~~~~f~ 146 (163)
+.++. +.|.++|..||+
T Consensus 77 ~~~~~g~~~~~~~~~~f~d~f~~~fg 102 (373)
T PRK14301 77 NGGFGGFSSAEDIFSHFSDIFGDLFG 102 (373)
T ss_pred CCCCCCcccccccccchHHHHHHHhh
Confidence 11111 223467888886
No 18
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1e-20 Score=162.24 Aligned_cols=70 Identities=34% Similarity=0.589 Sum_probs=66.0
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCC
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGI 126 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~ 126 (163)
..|||+||||+++|+.+|||++||+|+++||||+++...++++|++|++||++|+|+ .+|..||+||+..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~------~kR~~YD~~G~~g 73 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDD------EKRQRYDQFGHAG 73 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchh------HHHHHHhhhcccc
Confidence 469999999999999999999999999999999998777899999999999999999 7999999998754
No 19
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.9e-20 Score=160.17 Aligned_cols=70 Identities=29% Similarity=0.522 Sum_probs=64.7
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC--cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCC
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN--NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGI 126 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~--~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~ 126 (163)
..|||+||||+++|+.+|||+|||+|+++||||+++.. .++++|++|++||++|+|+ ++|..||+||...
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~------~kR~~YD~~g~~~ 74 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDP------QKRAMYDRFGYVG 74 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcCh------hhHHHHhhcCccc
Confidence 36999999999999999999999999999999998753 4789999999999999999 8999999999754
No 20
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.82 E-value=3e-20 Score=157.96 Aligned_cols=89 Identities=31% Similarity=0.502 Sum_probs=74.8
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCCC--
Q 031261 53 DPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEPF-- 130 (163)
Q Consensus 53 d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~~-- 130 (163)
|||+||||+++|+.++||+|||+|++++|||+++...++++|++|++||++|+|+ .+|..||.||....++.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~------~~R~~yd~~g~~~~~~~~~ 74 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDP------EKRAQYDQFGHAGFNGGGG 74 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhCh------HHHHhhhhcccccccccCc
Confidence 7999999999999999999999999999999998666889999999999999999 79999999997653311
Q ss_pred --C-CC-------CCcchHHHHHhhcC
Q 031261 131 --R-GM-------NDPDWDLWEEWMGW 147 (163)
Q Consensus 131 --~-~~-------~~~~~~~~~~~f~~ 147 (163)
. ++ .+.+.++|++||++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~f~~~fg~ 101 (354)
T TIGR02349 75 GGGGGFNGFDIGFFGDFGDIFGDFFGG 101 (354)
T ss_pred CCCCCcCCccccCcCchhhhHHHHhcc
Confidence 1 11 12345899999974
No 21
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.6e-20 Score=159.28 Aligned_cols=91 Identities=35% Similarity=0.593 Sum_probs=73.8
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCC
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEP 129 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~-~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~ 129 (163)
..|||+||||+++|+.+|||++||+|+++||||+++.. .++++|++|++||++|+|+ .+|..||.||....+.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~------~~r~~yd~~g~~~~~~ 76 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDP------QKRAAYDQYGHAAFEQ 76 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcch------hhhhHhhhcccccccc
Confidence 36999999999999999999999999999999998754 4789999999999999999 7999999998754321
Q ss_pred ------CCC---CCCcchHHHHHhhcC
Q 031261 130 ------FRG---MNDPDWDLWEEWMGW 147 (163)
Q Consensus 130 ------~~~---~~~~~~~~~~~~f~~ 147 (163)
+.+ +.+.|.++|..||++
T Consensus 77 ~~~~~~~~~~~~~~~~f~~~f~~~fgg 103 (371)
T PRK10767 77 GGGGGGFGGGGGFGDIFGDIFGDIFGG 103 (371)
T ss_pred CCCCCCCCCccccccchhhhhhhhccC
Confidence 111 112244677777754
No 22
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.8e-20 Score=159.78 Aligned_cols=69 Identities=35% Similarity=0.637 Sum_probs=65.6
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCC
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGI 126 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~ 126 (163)
.|||+||||+++|+.++||+|||+|+++||||+++.+.++++|++|++||++|+|+ .+|..||+||...
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~------~kR~~YD~~g~~~ 71 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDP------EKRKLYDQFGHAA 71 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCH------HHHHHHhhhcccc
Confidence 69999999999999999999999999999999998777899999999999999999 7999999999754
No 23
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=3.8e-20 Score=158.30 Aligned_cols=91 Identities=35% Similarity=0.586 Sum_probs=75.5
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCC--
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEP-- 129 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~-- 129 (163)
.|||+||||+++|+.++||++||+|++++|||+++...+.++|++|++||++|+|+ .+|..||.||.....+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~------~~r~~yd~~G~~~~~~~~ 75 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDA------EKRAHYDRFGTAPGAGMP 75 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcch------hhhhhHhhcCCccccccc
Confidence 59999999999999999999999999999999998767899999999999999999 7999999999754211
Q ss_pred ----CCCCCCcchHHHHHhhcCC
Q 031261 130 ----FRGMNDPDWDLWEEWMGWE 148 (163)
Q Consensus 130 ----~~~~~~~~~~~~~~~f~~~ 148 (163)
+.+++.+..++|.+||++.
T Consensus 76 ~~~~~~~~~~d~~d~f~~~fg~~ 98 (371)
T PRK14292 76 GGDPFGGMGFDPMDIFEQLFGGA 98 (371)
T ss_pred CCcccCccCCChHHHHHHhhCCC
Confidence 1111111248899999753
No 24
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.5e-20 Score=159.33 Aligned_cols=70 Identities=36% Similarity=0.662 Sum_probs=64.7
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCC
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGI 126 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~-~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~ 126 (163)
..|||+||||+++|+.+|||+|||+|+++||||+++.. .++++|++|++||++|+|+ ++|..||.||...
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~------~kr~~yD~~G~~~ 74 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDP------QKRAQYDQFGHAA 74 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCH------HHHHHHHhhcccc
Confidence 36999999999999999999999999999999999754 4789999999999999999 7999999999754
No 25
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=1e-19 Score=155.40 Aligned_cols=90 Identities=30% Similarity=0.441 Sum_probs=74.8
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC--cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCC
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN--NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEP 129 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~--~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~ 129 (163)
.|||+||||+++|+.+|||++||+|++++|||+++.+ .+.++|++|++||++|+|+ .+|..||.||+.+..+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~------~~r~~yd~~G~~~~~~ 76 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDP------QKRRQYDQTGTVDFGA 76 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcCh------hhhhhhcccCCccccc
Confidence 5999999999999999999999999999999999765 4789999999999999999 7999999999754321
Q ss_pred -CCCC-------CCcchHHHHHhhcC
Q 031261 130 -FRGM-------NDPDWDLWEEWMGW 147 (163)
Q Consensus 130 -~~~~-------~~~~~~~~~~~f~~ 147 (163)
..++ ..++.++|..||++
T Consensus 77 ~~~~~~~~~~~~~~~~~d~f~~~fg~ 102 (365)
T PRK14290 77 GGSNFNWDNFTHFSDINDIFNQIFGG 102 (365)
T ss_pred CCCCccccccccccchhHHHHHHhcC
Confidence 0010 12346889999974
No 26
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=3.3e-20 Score=159.81 Aligned_cols=68 Identities=32% Similarity=0.484 Sum_probs=63.8
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCC
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDG 124 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~-~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~ 124 (163)
..|||+||||+++|+.+|||+|||+|+++||||+++++ .++++|++|++||+||+|+ ++|+.||+||+
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~------~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDP------AKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcch------hhhhHHHHhhh
Confidence 36999999999999999999999999999999999754 5889999999999999999 89999999985
No 27
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.1e-19 Score=156.90 Aligned_cols=69 Identities=36% Similarity=0.638 Sum_probs=64.2
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCC
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGI 126 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~-~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~ 126 (163)
.|||+||||+++|+.+|||+|||+|++++|||+++.. .++++|++|++||++|+|+ .+|..||.||...
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~------~~r~~yD~~g~~~ 72 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSND------DKRRRYDQFGHAG 72 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhh------hhhhhhhhccchh
Confidence 5999999999999999999999999999999999754 4789999999999999999 7999999999754
No 28
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=9.4e-20 Score=156.92 Aligned_cols=69 Identities=35% Similarity=0.627 Sum_probs=64.1
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCC
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGI 126 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~-~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~ 126 (163)
.|||+||||+++|+.+|||++||+|+++||||+++.. .++++|++|++||++|+|+ ++|..||+||...
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~------~kR~~YD~~G~~g 70 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDA------QKRESYDRYGKDG 70 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCH------HHHHHHHhccccc
Confidence 4899999999999999999999999999999999854 4889999999999999998 8999999999753
No 29
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1e-19 Score=155.86 Aligned_cols=69 Identities=32% Similarity=0.586 Sum_probs=64.9
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCC
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGI 126 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~ 126 (163)
.|||+||||+++|+.+|||++||+|++++|||+++...++++|++|++||++|+|+ .+|..||+||...
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~------~~r~~yD~~G~~~ 71 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDE------QKRAAYDRFGHDA 71 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhH------hHhhHHHhccccc
Confidence 59999999999999999999999999999999998667889999999999999998 7999999998754
No 30
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.6e-19 Score=154.64 Aligned_cols=90 Identities=30% Similarity=0.505 Sum_probs=75.3
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCC--
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEP-- 129 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~-- 129 (163)
.|||+||||+++++.+|||+|||+|++++|||+++...++++|++|++||++|+|+ .+|..||.||+....+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~------~~R~~yd~~g~~g~~~~~ 76 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDP------ETRARYDQFGEAGVSGAA 76 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhch------HHHHHHhhccccccccCC
Confidence 59999999999999999999999999999999998777899999999999999999 7999999998753221
Q ss_pred -CCCCC--CcchHHHHHhhcC
Q 031261 130 -FRGMN--DPDWDLWEEWMGW 147 (163)
Q Consensus 130 -~~~~~--~~~~~~~~~~f~~ 147 (163)
+.++. ..+.++|++||++
T Consensus 77 ~~~~~~~~~~~~d~f~~~fg~ 97 (374)
T PRK14293 77 GFPDMGDMGGFADIFETFFSG 97 (374)
T ss_pred CcCCcccccchHHHHHHHhcc
Confidence 11111 2245789999863
No 31
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.5e-19 Score=150.13 Aligned_cols=89 Identities=35% Similarity=0.564 Sum_probs=76.7
Q ss_pred CcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCC
Q 031261 50 SVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEP 129 (163)
Q Consensus 50 ~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~ 129 (163)
...|||+||||+++|+..|||+||++|+++||||.+....+.++|++|.+|||+|+|+ ++|..||.++...
T Consensus 41 ~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~------eKR~~YD~~~~~~--- 111 (288)
T KOG0715|consen 41 SKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDE------EKRQEYDVYGLEQ--- 111 (288)
T ss_pred CCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCH------HHHHHHHHhhhhc---
Confidence 3449999999999999999999999999999999999999999999999999999999 8999999998765
Q ss_pred CCCCCCcchHHHHHhhcC
Q 031261 130 FRGMNDPDWDLWEEWMGW 147 (163)
Q Consensus 130 ~~~~~~~~~~~~~~~f~~ 147 (163)
...+.+...++|..+|++
T Consensus 112 ~~~~~g~~~~~~~~~~~~ 129 (288)
T KOG0715|consen 112 HGEFGGNPFDVFLEFFGG 129 (288)
T ss_pred cccccCCccchHHHhhcc
Confidence 111122226788888876
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.79 E-value=2.6e-19 Score=149.74 Aligned_cols=90 Identities=21% Similarity=0.402 Sum_probs=74.8
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCC-CC
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDE-PF 130 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~-~~ 130 (163)
.|||+||||+++++.+|||++||+|++++|||+++...++++|++|++||++|+|+ .+|..||.||..... ++
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~------~kr~~yD~~g~~~~~~~~ 77 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDE------QRRAEYDQLWQHRNDPQF 77 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhH------HHHHHHHHhhccccCccc
Confidence 69999999999999999999999999999999988777999999999999999998 799999999753110 11
Q ss_pred C------C----CCCcchHHHHHhhcC
Q 031261 131 R------G----MNDPDWDLWEEWMGW 147 (163)
Q Consensus 131 ~------~----~~~~~~~~~~~~f~~ 147 (163)
. + ...++.++|+.||++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~f~~~~g~ 104 (306)
T PRK10266 78 NRQFQHGDGQSFNAEDFDDIFSSIFGQ 104 (306)
T ss_pred ccccccCCCCCCCCCCHHHHHHHHhCC
Confidence 0 1 112456889999874
No 33
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.77 E-value=4.9e-19 Score=115.35 Aligned_cols=62 Identities=40% Similarity=0.724 Sum_probs=59.0
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCc--HHHHHHHHHHHHHHhcCcCCCCCCchhhhcc
Q 031261 53 DPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNN--CGVQFHLINEAYDMVMNNFREEPNEPEIMYQ 120 (163)
Q Consensus 53 d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~--a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd 120 (163)
|||+||||+++++.++||++|+++++++|||++.... +.+.|..|++||++|+++ .+|..||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~------~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDP------ERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSH------HHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCH------HHHHhcC
Confidence 6899999999999999999999999999999998877 889999999999999999 7999997
No 34
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.4e-18 Score=149.36 Aligned_cols=70 Identities=31% Similarity=0.542 Sum_probs=64.9
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCC
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGI 126 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~-~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~ 126 (163)
..|||+||||+++|+.+|||++||+|+++||||+++.+ .++++|++|++||++|+|+ ++|..||.||...
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~------~~R~~yD~~G~~~ 74 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDP------DKRSRYDQFGHAG 74 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCH------HHHHHHHHhcccc
Confidence 46999999999999999999999999999999999755 4889999999999999998 7999999998754
No 35
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=8.5e-19 Score=150.94 Aligned_cols=70 Identities=37% Similarity=0.674 Sum_probs=64.4
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccC----CCCC
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQP----YDGG 125 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~-~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~----~g~~ 125 (163)
..|||+||||+++|+.+|||+|||+|+++||||+++.+ .++++|++|++||+||+|+ ++|..||+ ||+.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~------~~r~~yD~~~~~~G~~ 81 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDE------KKRKEYDEARSLFGNG 81 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCch------hhHHHHHHHHhhhccc
Confidence 36999999999999999999999999999999998754 4889999999999999999 79999998 8864
Q ss_pred C
Q 031261 126 I 126 (163)
Q Consensus 126 ~ 126 (163)
+
T Consensus 82 g 82 (389)
T PRK14295 82 G 82 (389)
T ss_pred c
Confidence 3
No 36
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.2e-19 Score=143.20 Aligned_cols=71 Identities=34% Similarity=0.550 Sum_probs=66.1
Q ss_pred CcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCC
Q 031261 50 SVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGI 126 (163)
Q Consensus 50 ~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~-~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~ 126 (163)
...|+|+||||+++++.++||++||+|++++|||+++++ ++.++|++||+||+||+|+ .+|.+||.||+..
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~------~kR~~YD~~g~~~ 100 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDP------TKRNVYDEYGELG 100 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcCh------hhhhhHHHhhhHH
Confidence 367999999999999999999999999999999999885 5899999999999999999 6999999997754
No 37
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.75 E-value=1.9e-18 Score=159.54 Aligned_cols=92 Identities=22% Similarity=0.233 Sum_probs=77.0
Q ss_pred CcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCC
Q 031261 50 SVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEP 129 (163)
Q Consensus 50 ~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~ 129 (163)
...+||+||||+++|+..+||++||+|++++|||+++.+.+.++|+.|++||+||+|+ .+|..||.||..+...
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp------~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDI------DKKKMYNKFGYDGIKG 644 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCH------HHHHHHhhccccccCC
Confidence 4689999999999999999999999999999999998877889999999999999999 8999999998764322
Q ss_pred CCCCCCcchHHHHHhhcCCCC
Q 031261 130 FRGMNDPDWDLWEEWMGWEGA 150 (163)
Q Consensus 130 ~~~~~~~~~~~~~~~f~~~~~ 150 (163)
.++.+| + +|.++||.+.+
T Consensus 645 -~~~iDP-~-~FfmlFgse~F 662 (1136)
T PTZ00341 645 -VNFIHP-S-IFYLLASLEKF 662 (1136)
T ss_pred -CCccCH-H-HHHHHhhhHHH
Confidence 244566 3 34466665444
No 38
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.1e-18 Score=144.78 Aligned_cols=89 Identities=31% Similarity=0.498 Sum_probs=75.5
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCc-HHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCC
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNN-CGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEP 129 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~-a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~ 129 (163)
..|||.||||+++++..+|+++||+.+++||||+|++++ |.++|+.|.+||+||+|+ ++|..||.++...-..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~------~~R~~YDk~~k~~~~~ 77 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDE------ESRAAYDKLRKSGSSA 77 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCH------HHHHHHHHHhhhcccc
Confidence 579999999999999999999999999999999999876 899999999999999999 8999999998755433
Q ss_pred CCCCCCcchHHHHHhhcC
Q 031261 130 FRGMNDPDWDLWEEWMGW 147 (163)
Q Consensus 130 ~~~~~~~~~~~~~~~f~~ 147 (163)
. +..++ ++.|.+-|+.
T Consensus 78 ~-~~~d~-~~~~r~~f~~ 93 (296)
T KOG0691|consen 78 Q-GREDQ-ADGFRKKFGS 93 (296)
T ss_pred h-hhhhH-HHHHHHHhhh
Confidence 3 22333 5666666653
No 39
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.7e-18 Score=134.10 Aligned_cols=91 Identities=25% Similarity=0.476 Sum_probs=72.6
Q ss_pred CCCcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC---cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCC
Q 031261 48 SSSVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN---NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDG 124 (163)
Q Consensus 48 ~~~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~---~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~ 124 (163)
+....|+|+||||..+|+..+|+++|++|++++|||+++.. .+.++|++|+.||.||+|. ++|.+||.-|.
T Consensus 10 ~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDe------ekR~~YDetG~ 83 (264)
T KOG0719|consen 10 SFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDE------EKRAVYDETGS 83 (264)
T ss_pred cccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHH------HHHHHHhccCC
Confidence 34556999999999999999999999999999999998633 2789999999999999998 89999999988
Q ss_pred CCCCCCCCCCCcchHHHHHhh
Q 031261 125 GIDEPFRGMNDPDWDLWEEWM 145 (163)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~f 145 (163)
.++.... -...+-+.|..+|
T Consensus 84 idd~~~d-~~~~~~e~~~~iy 103 (264)
T KOG0719|consen 84 IDDESGD-IDEDWLEFWRAIY 103 (264)
T ss_pred CCCccch-hhhHHHHHHHHHH
Confidence 6633311 1223234555544
No 40
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=5.5e-18 Score=146.12 Aligned_cols=72 Identities=25% Similarity=0.514 Sum_probs=66.7
Q ss_pred CCcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCc----HHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCC
Q 031261 49 SSVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNN----CGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDG 124 (163)
Q Consensus 49 ~~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~----a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~ 124 (163)
....|+|.+|+|+++|+.+|||+|||++++.+||||..+++ |++.|++|.+|||||+|| ++|++||.||+
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp------~kRaIYD~~G~ 79 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDP------QKRAIYDNYGE 79 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcCh------HHHHHHHHhhh
Confidence 35569999999999999999999999999999999987665 789999999999999999 89999999998
Q ss_pred CC
Q 031261 125 GI 126 (163)
Q Consensus 125 ~~ 126 (163)
.+
T Consensus 80 qG 81 (546)
T KOG0718|consen 80 QG 81 (546)
T ss_pred cc
Confidence 65
No 41
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.6e-17 Score=143.11 Aligned_cols=71 Identities=32% Similarity=0.524 Sum_probs=64.9
Q ss_pred CCCcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCc--HHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCC
Q 031261 48 SSSVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNN--CGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDG 124 (163)
Q Consensus 48 ~~~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~--a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~ 124 (163)
+...+.||+||||..++++.+||++||+|+++||||+++... ++++|+.|+.||+||+|| +.|..||.+..
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp------~eR~wyd~hre 76 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDP------QERAWYDSHRE 76 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcCh------HhhhhHHHHHH
Confidence 346789999999999999999999999999999999987764 789999999999999999 89999998644
No 42
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.69 E-value=4.6e-17 Score=102.60 Aligned_cols=54 Identities=43% Similarity=0.710 Sum_probs=50.9
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-CcHHHHHHHHHHHHHHhcC
Q 031261 53 DPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRG-NNCGVQFHLINEAYDMVMN 106 (163)
Q Consensus 53 d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~-~~a~~~f~~I~~Ay~vL~d 106 (163)
|||+||||+++++.++||++|++|++++|||++.. ..+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999977 5578999999999999986
No 43
>PHA03102 Small T antigen; Reviewed
Probab=99.69 E-value=4.7e-17 Score=123.62 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=69.6
Q ss_pred cCCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCC
Q 031261 51 VMDPYKTLRIQRGA--SESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDE 128 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a--~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~ 128 (163)
...+|+||||+++| +.++||++||++++++|||++++ .++|++|++||++|+|+ .+|..||.+|.....
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~---~e~~k~in~Ay~~L~d~------~~r~~yd~~g~~~~~ 74 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD---EEKMKELNTLYKKFRES------VKSLRDLDGEEDSSS 74 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch---hHHHHHHHHHHHHHhhH------HHhccccccCCcccc
Confidence 45789999999999 99999999999999999999643 48999999999999999 699999999875533
Q ss_pred CCCCCCCcchHHHHHhhcCC
Q 031261 129 PFRGMNDPDWDLWEEWMGWE 148 (163)
Q Consensus 129 ~~~~~~~~~~~~~~~~f~~~ 148 (163)
.... .+ .++|...|+++
T Consensus 75 ~~~~--~~-~~~f~~~fg~~ 91 (153)
T PHA03102 75 EEED--VP-SGYVGATFGDR 91 (153)
T ss_pred cccc--cH-HHHhhhhcCCc
Confidence 3221 12 56666666544
No 44
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.69 E-value=4.3e-17 Score=104.58 Aligned_cols=56 Identities=45% Similarity=0.732 Sum_probs=52.3
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--CcHHHHHHHHHHHHHHhcCc
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRG--NNCGVQFHLINEAYDMVMNN 107 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~--~~a~~~f~~I~~Ay~vL~d~ 107 (163)
.|||+||||+++++.++||++|+++++++|||++.. ..+.+.|++|++||++|+|+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~ 58 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCC
Confidence 489999999999999999999999999999999974 45789999999999999997
No 45
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.2e-17 Score=128.92 Aligned_cols=73 Identities=32% Similarity=0.553 Sum_probs=66.8
Q ss_pred CCCcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCC
Q 031261 48 SSSVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN-NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGI 126 (163)
Q Consensus 48 ~~~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~-~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~ 126 (163)
.....|||+||||++++++.|||++||+|++++||||++.. ..++.|..|.+||+.|+|. ..|..|+.||+.+
T Consensus 95 ~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~------~sreN~ekYG~PD 168 (230)
T KOG0721|consen 95 ERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDK------KSRENWEKYGNPD 168 (230)
T ss_pred HhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcch------hhHHHHHHhCCCC
Confidence 44678999999999999999999999999999999999874 4678899999999999998 7999999999754
No 46
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.68 E-value=7.9e-17 Score=146.08 Aligned_cols=89 Identities=33% Similarity=0.468 Sum_probs=74.0
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCCCCCC
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEPFR 131 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~~~~~ 131 (163)
.|||+||||+++++..+||++||+|++++|||+++...+.++|++|++||++|+|+ .+|..||.||..+.+...
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP------~KRa~YD~fG~aG~d~e~ 75 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNP------KKRANYDKYGHDGVDRED 75 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCH------HHHHHHhhhccccccccc
Confidence 59999999999999999999999999999999998777888999999999999999 799999999875533222
Q ss_pred CCCCcchHHHHHhhcC
Q 031261 132 GMNDPDWDLWEEWMGW 147 (163)
Q Consensus 132 ~~~~~~~~~~~~~f~~ 147 (163)
++. ...++|.+||+.
T Consensus 76 gf~-f~~DIF~sfFee 90 (871)
T TIGR03835 76 DFD-FQADVFNSFFEE 90 (871)
T ss_pred ccc-hhHHHHHHHhhh
Confidence 211 123678887753
No 47
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.66 E-value=8.7e-17 Score=135.52 Aligned_cols=104 Identities=26% Similarity=0.395 Sum_probs=77.9
Q ss_pred CCcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCc----HHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCC
Q 031261 49 SSVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNN----CGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDG 124 (163)
Q Consensus 49 ~~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~----a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~ 124 (163)
...+|||+||||.++|+..||.++||+++.+||||...+.. ++.+|.-|..|-+||+|| ++|..||.- +
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~------EkRrqFDnG-e 463 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDP------EKRRQFDNG-E 463 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCH------HHHhhccCC-C
Confidence 46789999999999999999999999999999999887664 788999999999999999 899999973 3
Q ss_pred CC---CCCCCCCCC---cchHHHHHhhcCCCCCCCCCCCCCC
Q 031261 125 GI---DEPFRGMND---PDWDLWEEWMGWEGAGIRDYSSHVN 160 (163)
Q Consensus 125 ~~---~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~ 160 (163)
++ +.+..|+++ .||. |..|-..+++|.+.|+||-|
T Consensus 464 DPLD~Es~q~GGGg~~Hgf~n-~hgF~~F~~Gg~~~~~F~Fn 504 (504)
T KOG0624|consen 464 DPLDPESQQGGGGGPFHGFWN-EHGFNPFGGGGPFQFKFHFN 504 (504)
T ss_pred CCCChhhccCCCCCCCCCCcc-ccCCCCCCCCCCCCcccccC
Confidence 22 112222222 3333 44443444455556666654
No 48
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.3e-15 Score=118.03 Aligned_cols=67 Identities=39% Similarity=0.651 Sum_probs=63.2
Q ss_pred CcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCc--HHHHHHHHHHHHHHhcCcCCCCCCchhhhccCC
Q 031261 50 SVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNN--CGVQFHLINEAYDMVMNNFREEPNEPEIMYQPY 122 (163)
Q Consensus 50 ~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~--a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~ 122 (163)
...++|+||||.++++..||+++||++++++|||+++.+. +.+.|+.|++||++|+|+ .+|..||.+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~------~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDP------ERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCH------HHHHHhhhh
Confidence 4679999999999999999999999999999999998775 789999999999999998 799999986
No 49
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.50 E-value=3.9e-14 Score=109.66 Aligned_cols=64 Identities=20% Similarity=0.300 Sum_probs=56.5
Q ss_pred CCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCCc------HHHHHHHHHHHHHHhcCcCCCCCCchhhhccC
Q 031261 52 MDPYKTLRIQRG--ASESEVKKAFRQLALQYHPDVCRGNN------CGVQFHLINEAYDMVMNNFREEPNEPEIMYQP 121 (163)
Q Consensus 52 ~d~Y~iLgv~~~--a~~~eIk~aYr~l~~~~HPDk~~~~~------a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~ 121 (163)
.|||+||||++. ++..+|+++|+++++++|||+..... +.+.+..||+||++|+|| .+|..|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp------~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHP------LKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCCh------hHHHHHHH
Confidence 489999999996 68899999999999999999976543 456799999999999999 59999974
No 50
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.8e-14 Score=116.69 Aligned_cols=74 Identities=32% Similarity=0.427 Sum_probs=68.2
Q ss_pred CCCcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCCC
Q 031261 48 SSSVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGID 127 (163)
Q Consensus 48 ~~~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~~ 127 (163)
..+..|+|+||||.++++..||.++||+|++++|||++++++..+.|+.|..||++|.|+ +.|..||-.-+.++
T Consensus 29 YCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~------e~rt~ydyaldhpd 102 (329)
T KOG0722|consen 29 YCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDN------ETRTQYDYALDHPD 102 (329)
T ss_pred cccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccch------hhHHhHHHHhcCch
Confidence 567899999999999999999999999999999999999999899999999999999998 79999997655443
No 51
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.46 E-value=8.3e-14 Score=107.37 Aligned_cols=64 Identities=16% Similarity=0.263 Sum_probs=55.7
Q ss_pred CCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCCc----HHHHHHHHHHHHHHhcCcCCCCCCchhhhccC
Q 031261 52 MDPYKTLRIQRG--ASESEVKKAFRQLALQYHPDVCRGNN----CGVQFHLINEAYDMVMNNFREEPNEPEIMYQP 121 (163)
Q Consensus 52 ~d~Y~iLgv~~~--a~~~eIk~aYr~l~~~~HPDk~~~~~----a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~ 121 (163)
.|||+||||++. ++..+|+++|+++++++|||+..... +.+.+..||+||++|+|| .+|..|..
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp------~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDA------LKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHH
Confidence 589999999997 78999999999999999999986432 234578999999999999 59999975
No 52
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5.5e-14 Score=121.34 Aligned_cols=67 Identities=21% Similarity=0.396 Sum_probs=64.0
Q ss_pred CcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCC
Q 031261 50 SVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPY 122 (163)
Q Consensus 50 ~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~ 122 (163)
...|+|.+|||+.++++++||+.||+++...|||||..+.|+|.|+.|+.||++|+|+ ++|..||.-
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~------~kR~eYd~e 299 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDS------VKRKEYDLE 299 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcch------hhhhHHHHH
Confidence 4889999999999999999999999999999999999888999999999999999999 799999964
No 53
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.7e-13 Score=117.52 Aligned_cols=102 Identities=27% Similarity=0.434 Sum_probs=78.1
Q ss_pred CCCcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC--cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCC
Q 031261 48 SSSVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN--NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGG 125 (163)
Q Consensus 48 ~~~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~--~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~ 125 (163)
.+...|+|+||||..+++..|||++||++++.+|||++... .++.+|++|-+||.+|+|+ .+|..||.--.-
T Consensus 369 kSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~------~kr~r~dsg~dl 442 (486)
T KOG0550|consen 369 KSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDP------MKRVRFDSGQDL 442 (486)
T ss_pred HhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCH------HHHhhcccccch
Confidence 34678999999999999999999999999999999999877 3788999999999999999 799999985433
Q ss_pred CCCCCCCCCCcchHHHHHh-----hcCCCCCCCCC
Q 031261 126 IDEPFRGMNDPDWDLWEEW-----MGWEGAGIRDY 155 (163)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~-----f~~~~~~~~~~ 155 (163)
.+.+..+.+-..+.+|.-+ |+..|++..++
T Consensus 443 e~~~~~~a~~dp~~~~~a~qa~~~f~f~gg~~~n~ 477 (486)
T KOG0550|consen 443 EEVGSGGAGFDPFNIFRAFQALVQFGFPGGFSENS 477 (486)
T ss_pred hhhcCCCcCcChhhhhhhcccceEEeccCCCCCCC
Confidence 3333322222226777777 65554443333
No 54
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.43 E-value=2.9e-13 Score=105.26 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=58.4
Q ss_pred cCCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCCc------HHHHHHHHHHHHHHhcCcCCCCCCchhhhccC-
Q 031261 51 VMDPYKTLRIQRG--ASESEVKKAFRQLALQYHPDVCRGNN------CGVQFHLINEAYDMVMNNFREEPNEPEIMYQP- 121 (163)
Q Consensus 51 ~~d~Y~iLgv~~~--a~~~eIk~aYr~l~~~~HPDk~~~~~------a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~- 121 (163)
..|||+||||++. ++..+|+++|++|++++|||++.... +.+.+..||+||++|+|| .+|..|..
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p------~~Ra~Yll~ 78 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDP------LKRARYLLH 78 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCh------hhHHHHHHH
Confidence 4799999999986 68999999999999999999987544 234468999999999999 59999984
Q ss_pred -CCCC
Q 031261 122 -YDGG 125 (163)
Q Consensus 122 -~g~~ 125 (163)
.|..
T Consensus 79 l~G~~ 83 (176)
T PRK03578 79 LRGVD 83 (176)
T ss_pred hcCCC
Confidence 5553
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.43 E-value=3.2e-13 Score=104.77 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=58.3
Q ss_pred CcCCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCCc------HHHHHHHHHHHHHHhcCcCCCCCCchhhhccC
Q 031261 50 SVMDPYKTLRIQRG--ASESEVKKAFRQLALQYHPDVCRGNN------CGVQFHLINEAYDMVMNNFREEPNEPEIMYQP 121 (163)
Q Consensus 50 ~~~d~Y~iLgv~~~--a~~~eIk~aYr~l~~~~HPDk~~~~~------a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~ 121 (163)
...|||++|||++. .+..+|+++||++++++|||++.+.. +.+.+..||+||++|+|| .+|..|+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p------~~Ra~YlL 75 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSP------PRRARYLL 75 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCh------hhhHHHHH
Confidence 45799999999998 67899999999999999999986654 456799999999999999 59999984
No 56
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.40 E-value=2.6e-13 Score=111.78 Aligned_cols=59 Identities=25% Similarity=0.486 Sum_probs=52.6
Q ss_pred CCcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC--------cHHHHHHHHHHHHHHhcCc
Q 031261 49 SSVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN--------NCGVQFHLINEAYDMVMNN 107 (163)
Q Consensus 49 ~~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~--------~a~~~f~~I~~Ay~vL~d~ 107 (163)
....|+|+||||++++|.++||++||+|++++|||+.... .++++|++|++||++|+..
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4668999999999999999999999999999999997431 2678999999999999874
No 57
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.40 E-value=2.8e-13 Score=98.41 Aligned_cols=53 Identities=34% Similarity=0.481 Sum_probs=48.0
Q ss_pred CcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhc
Q 031261 50 SVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVM 105 (163)
Q Consensus 50 ~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~ 105 (163)
...++|+||||+++++.+||+++||+|++++|||+. ...+.|++|++||++|.
T Consensus 63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 457999999999999999999999999999999984 24578999999999985
No 58
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.2e-13 Score=109.21 Aligned_cols=70 Identities=39% Similarity=0.599 Sum_probs=63.7
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCC--cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCCCCC
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGN--NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGI 126 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~--~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g~~~ 126 (163)
..|+|+||+|.++++..+|+++|+++++++|||+++.+ .+..+|++|.+||++|+|+ .+|..||.||+..
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~------~kr~~~d~~~~~~ 73 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDP------KKRKIYDQYGEEG 73 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCH------HHhhhccccCccc
Confidence 46999999999999999999999999999999998877 4556899999999999999 7999999999744
No 59
>PHA02624 large T antigen; Provisional
Probab=99.37 E-value=1.2e-12 Score=117.49 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=56.1
Q ss_pred CCcCCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhcc
Q 031261 49 SSVMDPYKTLRIQRGA--SESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQ 120 (163)
Q Consensus 49 ~~~~d~Y~iLgv~~~a--~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd 120 (163)
....++|++|||++++ +.++||++||++++++|||+.. ++++|++|++||++|+|+ .+|..|+
T Consensus 8 ee~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG---deekfk~Ln~AYevL~d~------~k~~r~~ 72 (647)
T PHA02624 8 EESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG---DEEKMKRLNSLYKKLQEG------VKSARQS 72 (647)
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---cHHHHHHHHHHHHHHhcH------HHhhhcc
Confidence 3467999999999999 9999999999999999999953 358999999999999998 5777773
No 60
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.4e-11 Score=100.86 Aligned_cols=94 Identities=23% Similarity=0.399 Sum_probs=77.1
Q ss_pred CcCCcccccccCC---CCCHHHHHHHHHHHHHHhCCCCCCCC---cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccCCC
Q 031261 50 SVMDPYKTLRIQR---GASESEVKKAFRQLALQYHPDVCRGN---NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYD 123 (163)
Q Consensus 50 ~~~d~Y~iLgv~~---~a~~~eIk~aYr~l~~~~HPDk~~~~---~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~~g 123 (163)
...|+|.+|||+. .+++.+|.+++++.+.+||||+.... ...+.|+.|++||+||+|+ .+|..||..+
T Consensus 41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~------~~R~qyDS~d 114 (379)
T COG5269 41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDR------KLRLQYDSND 114 (379)
T ss_pred hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccH------HHHhhccccc
Confidence 4579999999985 47889999999999999999997332 3678999999999999998 7999999866
Q ss_pred CCC--CCCCCCCCCcchHHHHHhhcCCC
Q 031261 124 GGI--DEPFRGMNDPDWDLWEEWMGWEG 149 (163)
Q Consensus 124 ~~~--~~~~~~~~~~~~~~~~~~f~~~~ 149 (163)
... ..+-....+.|+++|+..|..+.
T Consensus 115 f~advppp~~~t~~~Ffe~w~pvFe~ea 142 (379)
T COG5269 115 FDADVPPPRIYTPDEFFEVWEPVFEREA 142 (379)
T ss_pred cccCCCCccCCCchhHHHHHHHHHHhhh
Confidence 543 33344566888999999996553
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.19 E-value=1.3e-11 Score=106.91 Aligned_cols=73 Identities=26% Similarity=0.512 Sum_probs=64.9
Q ss_pred CCCcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---C---cHHHHHHHHHHHHHHhcCcCCCCCCchhhhccC
Q 031261 48 SSSVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRG---N---NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQP 121 (163)
Q Consensus 48 ~~~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~---~---~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~ 121 (163)
.....|||+|||++.+++..+||++||+|+.++||||.+. . .-++.+++|++||+.|+|. ..|+.|=.
T Consensus 94 ~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~------k~renyl~ 167 (610)
T COG5407 94 YRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDK------KRRENYLN 167 (610)
T ss_pred HHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhH------HHHHHHHh
Confidence 3467899999999999999999999999999999999865 1 1578899999999999998 68999999
Q ss_pred CCCCC
Q 031261 122 YDGGI 126 (163)
Q Consensus 122 ~g~~~ 126 (163)
||..+
T Consensus 168 yGtPd 172 (610)
T COG5407 168 YGTPD 172 (610)
T ss_pred cCCCC
Confidence 98744
No 62
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.1e-11 Score=95.86 Aligned_cols=59 Identities=24% Similarity=0.566 Sum_probs=55.0
Q ss_pred CcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCc--HHHHHHHHHHHHHHhcCcC
Q 031261 50 SVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNN--CGVQFHLINEAYDMVMNNF 108 (163)
Q Consensus 50 ~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~--a~~~f~~I~~Ay~vL~d~~ 108 (163)
-.-|+|+||.|.++.+.++||+.||+|++..|||+|+++. |...|..|.+||.+|.|+.
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~ 111 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDK 111 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHH
Confidence 4679999999999999999999999999999999999874 7889999999999999983
No 63
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.18 E-value=5.4e-11 Score=92.30 Aligned_cols=63 Identities=11% Similarity=0.191 Sum_probs=55.7
Q ss_pred CCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCCc------HHHHHHHHHHHHHHhcCcCCCCCCchhhhcc
Q 031261 52 MDPYKTLRIQRG--ASESEVKKAFRQLALQYHPDVCRGNN------CGVQFHLINEAYDMVMNNFREEPNEPEIMYQ 120 (163)
Q Consensus 52 ~d~Y~iLgv~~~--a~~~eIk~aYr~l~~~~HPDk~~~~~------a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd 120 (163)
.|||++|||++. .+...|+++|++|.+++|||+....+ +.+....||+||.+|+||+ +|+.|=
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl------~RA~YL 72 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPI------LRAEAI 72 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChH------HHHHHH
Confidence 599999999987 89999999999999999999987665 3456789999999999994 898884
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.98 E-value=9.2e-10 Score=84.17 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCc------HHHHHHHHHHHHHHhcCcCCCCCCchhhhccC
Q 031261 63 GASESEVKKAFRQLALQYHPDVCRGNN------CGVQFHLINEAYDMVMNNFREEPNEPEIMYQP 121 (163)
Q Consensus 63 ~a~~~eIk~aYr~l~~~~HPDk~~~~~------a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~ 121 (163)
..+..+|+++|+++++++|||+..... +.+.+..||+||++|+|| .+|..|..
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p------~~Ra~ylL 60 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDP------LMRAEYML 60 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCCh------hhhHHHHH
Confidence 357889999999999999999975543 567899999999999999 59999985
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=5.7e-08 Score=78.37 Aligned_cols=59 Identities=31% Similarity=0.557 Sum_probs=53.2
Q ss_pred CCcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH-HhcCc
Q 031261 49 SSVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYD-MVMNN 107 (163)
Q Consensus 49 ~~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~-vL~d~ 107 (163)
...+.+|.||||.++++.++++.+|..|++++|||........+.|.+|.+||. ||...
T Consensus 44 e~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 44 EKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999877777899999999999 77654
No 66
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=8.8e-08 Score=90.27 Aligned_cols=57 Identities=23% Similarity=0.426 Sum_probs=48.5
Q ss_pred CCCcCCcccccccCCC----CCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcC
Q 031261 48 SSSVMDPYKTLRIQRG----ASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMN 106 (163)
Q Consensus 48 ~~~~~d~Y~iLgv~~~----a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d 106 (163)
.....+.|+||.|+-+ .+.+.||++|++|+.+||||||+... ++|.+||+|||.|..
T Consensus 1277 ~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGR--emFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1277 TMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGR--EMFERVNKAYELLSS 1337 (2235)
T ss_pred ccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHH--HHHHHHHHHHHHHHH
Confidence 4456789999999754 34588999999999999999987554 999999999999983
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7.9e-07 Score=63.44 Aligned_cols=56 Identities=25% Similarity=0.293 Sum_probs=47.7
Q ss_pred CCcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCc
Q 031261 49 SSVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNN 107 (163)
Q Consensus 49 ~~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~ 107 (163)
-+.+..-.||||++.++.+.||+++|++....|||+...+ -.-.+||+|+++|...
T Consensus 53 Msr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 53 MSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP---YLASKINEAKDLLEGT 108 (112)
T ss_pred cchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH---HHHHHHHHHHHHHhcc
Confidence 3456677899999999999999999999999999998766 3445699999998764
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=3.3e-05 Score=58.79 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=55.4
Q ss_pred CcCCcccccccCC--CCCHHHHHHHHHHHHHHhCCCCCCCC------cHHHHHHHHHHHHHHhcCcCCCCCCchhhhcc-
Q 031261 50 SVMDPYKTLRIQR--GASESEVKKAFRQLALQYHPDVCRGN------NCGVQFHLINEAYDMVMNNFREEPNEPEIMYQ- 120 (163)
Q Consensus 50 ~~~d~Y~iLgv~~--~a~~~eIk~aYr~l~~~~HPDk~~~~------~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd- 120 (163)
...+||.++|... ..++..++.-|....+++|||+.... .+.+...+||+||++|.||+ +|+.|=
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL------~RA~Yil 79 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPL------ARARYLL 79 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHH------HHHHHHH
Confidence 4579999998654 46777788899999999999985432 26788999999999999995 888885
Q ss_pred -CCCC
Q 031261 121 -PYDG 124 (163)
Q Consensus 121 -~~g~ 124 (163)
.+|.
T Consensus 80 kl~g~ 84 (168)
T KOG3192|consen 80 KLKGQ 84 (168)
T ss_pred HHhCC
Confidence 4554
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00013 Score=56.50 Aligned_cols=53 Identities=30% Similarity=0.481 Sum_probs=46.4
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCc--------HHHHHHHHHHHHHHh
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNN--------CGVQFHLINEAYDMV 104 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~--------a~~~f~~I~~Ay~vL 104 (163)
.+.|++|++....+..+|+++|+++....|||+-.... +.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999854332 678899999999854
No 70
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.14 E-value=0.00055 Score=60.51 Aligned_cols=49 Identities=24% Similarity=0.425 Sum_probs=36.6
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCc--------HHHHHHHHHHHHHHh
Q 031261 56 KTLRIQRGASESEVKKAFRQLALQYHPDVCRGNN--------CGVQFHLINEAYDMV 104 (163)
Q Consensus 56 ~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~--------a~~~f~~I~~Ay~vL 104 (163)
+=+.+..-++..+||++||+.++.+||||.+..+ +++.|..+++|++..
T Consensus 392 qpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 392 QPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred ccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555578999999999999999999987764 455566666666543
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0022 Score=49.67 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=48.2
Q ss_pred CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCCc------HHHHHHHHHHHHHHhcCcCCCCCCchhhhccC
Q 031261 53 DPYKTLRIQRGA--SESEVKKAFRQLALQYHPDVCRGNN------CGVQFHLINEAYDMVMNNFREEPNEPEIMYQP 121 (163)
Q Consensus 53 d~Y~iLgv~~~a--~~~eIk~aYr~l~~~~HPDk~~~~~------a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd~ 121 (163)
|++.++|+.+.+ +.+.++..|+.+.+.+|||+....+ +.+.+..++.||.+|.+++ +|..|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l------~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPL------LRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHH------HHHHHHH
Confidence 344555555543 4567999999999999999987665 3456889999999999995 8877753
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.51 E-value=0.026 Score=41.79 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=39.0
Q ss_pred CCcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCc
Q 031261 49 SSVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNN 107 (163)
Q Consensus 49 ~~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~ 107 (163)
.+.....+||+|++..+.++|.+.|..|-...+|++.... -.-.+|..|.+.|...
T Consensus 55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSf---YLQSKV~rAKErl~~E 110 (127)
T PF03656_consen 55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSF---YLQSKVFRAKERLEQE 110 (127)
T ss_dssp --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-H---HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCH---HHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999976433 3344577888887665
No 73
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=92.99 E-value=0.14 Score=40.42 Aligned_cols=43 Identities=33% Similarity=0.439 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH-HhcCcCCC
Q 031261 61 QRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYD-MVMNNFRE 110 (163)
Q Consensus 61 ~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~-vL~d~~~~ 110 (163)
+++|+.+||.+|+.++..+|--| ++.-.+|..||| +|++.++.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~ILM~rL~~ 44 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAILMERLRQ 44 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999444 266778999999 66776533
No 74
>PF13446 RPT: A repeated domain in UCH-protein
Probab=91.60 E-value=0.34 Score=30.87 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=36.1
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCc
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNN 107 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~ 107 (163)
..+.|++|||+++.+.+.|..+|+.... -.| .....+.+|..+|.+.
T Consensus 4 ~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P---------~~~~~~r~AL~~Ia~~ 50 (62)
T PF13446_consen 4 VEEAYEILGIDEDTDDDFIISAFQSKVN-DDP---------SQKDTLREALRVIAES 50 (62)
T ss_pred HHHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh---------HhHHHHHHHHHHHHHH
Confidence 4578999999999999999999999888 122 3444567777777664
No 75
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=88.20 E-value=0.62 Score=39.26 Aligned_cols=44 Identities=30% Similarity=0.419 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC-----CcHHHHHHHHHHHHHHhcCc
Q 031261 64 ASESEVKKAFRQLALQYHPDVCRG-----NNCGVQFHLINEAYDMVMNN 107 (163)
Q Consensus 64 a~~~eIk~aYr~l~~~~HPDk~~~-----~~a~~~f~~I~~Ay~vL~d~ 107 (163)
++..+|..+|+..++..||++... ....+.+++|.+||.+|.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~ 52 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDD 52 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhcc
Confidence 567889999999999999998742 23567799999999999984
No 76
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=85.54 E-value=2.4 Score=30.64 Aligned_cols=45 Identities=20% Similarity=0.357 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCc-----HHHHHHHHHHHHHHhcCc
Q 031261 63 GASESEVKKAFRQLALQYHPDVCRGNN-----CGVQFHLINEAYDMVMNN 107 (163)
Q Consensus 63 ~a~~~eIk~aYr~l~~~~HPDk~~~~~-----a~~~f~~I~~Ay~vL~d~ 107 (163)
..+..+++.+-|.+-++.|||.....+ .++-++.|+.-.+.|..+
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 356678999999999999999876554 245588888888888775
No 77
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=75.23 E-value=22 Score=24.01 Aligned_cols=59 Identities=8% Similarity=-0.006 Sum_probs=42.0
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHH----HHHHHHHHHHhcCcCCC
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQ----FHLINEAYDMVMNNFRE 110 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~----f~~I~~Ay~vL~d~~~~ 110 (163)
+|--.+.|+.+.++.+||..+=.+.++|..=-..+.....+. ..+|..+-..|.+.+.-
T Consensus 3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~~L~~ 65 (78)
T PF10041_consen 3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLDSLPT 65 (78)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 344556788999999999999999999986555544433333 45677777777776633
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=71.79 E-value=14 Score=24.91 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=31.1
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHH
Q 031261 52 MDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQF 94 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f 94 (163)
+|--+++|+++.++..||+.+-++.++++.--..+.....+.|
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AF 45 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAF 45 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHH
Confidence 4566789999999999999999988888854444333323343
No 79
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.56 E-value=28 Score=25.73 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=31.6
Q ss_pred CCcCCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 031261 49 SSVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCR 86 (163)
Q Consensus 49 ~~~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~ 86 (163)
.+....-+||+|++..+.++|.+.|..|-....+.+..
T Consensus 56 iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGG 93 (132)
T KOG3442|consen 56 ITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGG 93 (132)
T ss_pred ccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCc
Confidence 34567789999999999999999999999887665543
No 80
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=55.70 E-value=7.2 Score=17.57 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhc
Q 031261 93 QFHLINEAYDMVM 105 (163)
Q Consensus 93 ~f~~I~~Ay~vL~ 105 (163)
.|..|..||+.|.
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888763
No 81
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=28.22 E-value=95 Score=19.04 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=19.6
Q ss_pred ccccccCCCCCHHHHHHHHHHHHH
Q 031261 55 YKTLRIQRGASESEVKKAFRQLAL 78 (163)
Q Consensus 55 Y~iLgv~~~a~~~eIk~aYr~l~~ 78 (163)
+++=|+.+..+++|.|+.-|+-+.
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999887554
No 82
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=27.96 E-value=73 Score=17.21 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhCC
Q 031261 66 ESEVKKAFRQLALQYHP 82 (163)
Q Consensus 66 ~~eIk~aYr~l~~~~HP 82 (163)
.++.+..-|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47788999999999994
No 83
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=26.14 E-value=1.4e+02 Score=17.89 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCc
Q 031261 70 KKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNN 107 (163)
Q Consensus 70 k~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~ 107 (163)
.+.++..++.-||+.. ..+....|.+.|..|++.
T Consensus 12 ~~~~~~~~~~~~~~~~----~~~i~~~~~~~W~~l~~~ 45 (66)
T cd00084 12 SQEHRAEVKAENPGLS----VGEISKILGEMWKSLSEE 45 (66)
T ss_pred HHHHHHHHHHHCcCCC----HHHHHHHHHHHHHhCCHH
Confidence 4556777777888832 457888899999999885
No 84
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=25.42 E-value=81 Score=21.70 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=30.3
Q ss_pred ccCCCCC-HHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCcCCCCCCchhhhcc-CCC
Q 031261 59 RIQRGAS-ESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQ-PYD 123 (163)
Q Consensus 59 gv~~~a~-~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~~~~~~~~~R~~Yd-~~g 123 (163)
|++++.+ -.+|-+.+..++..+++. ..+.+..|.+.| +.|+ .-+..|| .++
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~------~~~~~~~l~~~y--~~~~------~~~~~~~~~~~ 103 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG------DPELLRGLAQMY--VEDP------RFAAMYDKKFG 103 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS---------HHHHHHHHHHT--TSTH------HHHHHHG-GGS
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHH--HcCH------HHHhhccccCC
Confidence 4556543 346778888888877772 126777788777 4565 4567777 553
No 85
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=25.06 E-value=1.3e+02 Score=21.11 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=25.1
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHhCCCC
Q 031261 51 VMDPYKTLRIQRGASESEVKKAFRQLALQYHPDV 84 (163)
Q Consensus 51 ~~d~Y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk 84 (163)
...||.||-++...|..+|-+.=-..+++-+||-
T Consensus 10 ~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~ 43 (93)
T cd01780 10 PDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNP 43 (93)
T ss_pred CCCCeeEEEccccccHHHHHHHHHHHhccCCCCc
Confidence 4689999999999888876655555555567764
No 86
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.66 E-value=90 Score=29.04 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=32.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCc
Q 031261 59 RIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNN 107 (163)
Q Consensus 59 gv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~ 107 (163)
-++..+..++||..++++.+.|||. ++...+.+|.+.|..-
T Consensus 396 ~~Ps~~~mEqvk~k~~~m~r~YSP~--------kkl~~Llk~ckLly~~ 436 (651)
T KOG2320|consen 396 STPSDVLMEQVKQKFTAMQRRYSPS--------KKLHALLKACKLLYAG 436 (651)
T ss_pred cCCcHHHHHHHHHHHHHHHHhhChH--------HHHHHHHHHHHHHHHH
Confidence 3344566788999999999999998 6777788888877664
No 87
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=24.23 E-value=57 Score=27.08 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhcC
Q 031261 91 GVQFHLINEAYDMVMN 106 (163)
Q Consensus 91 ~~~f~~I~~Ay~vL~d 106 (163)
..++++||+|+|+|+.
T Consensus 127 RRRLkKVNEAFE~LKR 142 (284)
T KOG3960|consen 127 RRRLKKVNEAFETLKR 142 (284)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4569999999999864
No 88
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=23.89 E-value=1.6e+02 Score=17.82 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHhcCc
Q 031261 72 AFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNN 107 (163)
Q Consensus 72 aYr~l~~~~HPDk~~~~~a~~~f~~I~~Ay~vL~d~ 107 (163)
..+..++.-||+. ...+..+.|.+.|..|++.
T Consensus 14 ~~r~~~~~~~p~~----~~~~i~~~~~~~W~~ls~~ 45 (66)
T cd01390 14 EQRPKLKKENPDA----SVTEVTKILGEKWKELSEE 45 (66)
T ss_pred HHHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHH
Confidence 3455666778883 2458889999999999885
No 89
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=23.35 E-value=2.8e+02 Score=23.46 Aligned_cols=57 Identities=16% Similarity=0.062 Sum_probs=39.0
Q ss_pred cCCcccccccCC-CCCHHHHHHHHHHHHHHh-------CCCCCCC----CcHHHHHHHHHHHHHHhcCc
Q 031261 51 VMDPYKTLRIQR-GASESEVKKAFRQLALQY-------HPDVCRG----NNCGVQFHLINEAYDMVMNN 107 (163)
Q Consensus 51 ~~d~Y~iLgv~~-~a~~~eIk~aYr~l~~~~-------HPDk~~~----~~a~~~f~~I~~Ay~vL~d~ 107 (163)
..+.++-||++. ..+.+|+++--+.++.+. ++|.... -.-.+.++++.++|+.|.+.
T Consensus 81 R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~ 149 (318)
T PF12725_consen 81 RPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAER 149 (318)
T ss_pred CcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 346677899988 688888777666555443 3332211 12478899999999999875
No 90
>COG4401 AroH Chorismate mutase [Amino acid transport and metabolism]
Probab=22.83 E-value=1e+02 Score=22.45 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=35.3
Q ss_pred hhhccCcceeeecccccCCCCCcCCcccc-cccCCCCCHHHHHHHHHHHHHHhCCCCC
Q 031261 29 KKMMMGRVKVICSASYSSSSSSVMDPYKT-LRIQRGASESEVKKAFRQLALQYHPDVC 85 (163)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~d~Y~i-Lgv~~~a~~~eIk~aYr~l~~~~HPDk~ 85 (163)
...+...+++.|..-.-. ..+...+-.+ +-+....+..+|.-.|.+.++++.||-.
T Consensus 64 ~~~gw~~Vpv~~~Qem~V-~gsL~~CIRvmi~~~t~~pq~~i~HvYL~~A~~LRPDl~ 120 (125)
T COG4401 64 ELPGWEYVPVMCMQEMPV-PGSLEKCIRVMITVNTQKPQSEIHHVYLREAVVLRPDLS 120 (125)
T ss_pred cCCCCcccceeeeeeccC-CCChhhheeEEEEecCCCCchHHHHHHHhhhhccCcccc
Confidence 344555666667653222 2222333333 3445566789999999999999999964
No 91
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=21.09 E-value=25 Score=22.56 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=19.6
Q ss_pred CCcccccccCCCCCHHHH-HHHHHHHHHHhCCC
Q 031261 52 MDPYKTLRIQRGASESEV-KKAFRQLALQYHPD 83 (163)
Q Consensus 52 ~d~Y~iLgv~~~a~~~eI-k~aYr~l~~~~HPD 83 (163)
.+++++||+++ +++ ......+....|||
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpd 34 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPD 34 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TT
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHH
Confidence 46889998854 556 55667788889998
Done!