BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031262
         (162 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJG|A Chain A, Crystal Structure Of A Probable Atp Binding Protein From
           Thermus Themophilus Hb8
 pdb|2Z08|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
           From Thermus Thermophilus Hb8
 pdb|2Z09|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
           From Thermus Thermophilus Hb8
 pdb|2Z3V|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
           From Thermus Thermophilus Hb8
          Length = 137

 Score = 28.5 bits (62), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 8/142 (5%)

Query: 1   MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPP-PKPNTSHHDSSACCPYLA 59
           M K +++  D + H++ A   A       G  L ++H   P P          A    L 
Sbjct: 1   MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLE 60

Query: 60  NSLGSL--CKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGT 117
            + G L   +A     + +AL+++G     ++   R  +  ++V+G +   A  + F G+
Sbjct: 61  RAEGVLEEARALTGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGS 120

Query: 118 SSSEEFVDQCIKKADCLTVGVR 139
            S      + + +A C  + VR
Sbjct: 121 QSQ-----RVVAEAPCPVLLVR 137


>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|B Chain B, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|C Chain C, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|D Chain D, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|E Chain E, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|F Chain F, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
          Length = 175

 Score = 28.5 bits (62), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 76  EALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLT 135
           EA +  G     +  +V+++    LV+G +    F   F GT S+      C+K A+C  
Sbjct: 104 EAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSA-----FCVKHAECPV 158

Query: 136 VGVRKQS 142
             +++ +
Sbjct: 159 XTIKRNA 165


>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
           Complexed With Nicotinamide Adenine Dinucleotide
 pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
           Complexed With Nicotinamide Adenine Dinucleotide
 pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
           With Nadh
 pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
           With Nadh
          Length = 605

 Score = 25.8 bits (55), Expect = 10.0,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 70  KPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKK 106
           KP     A +  G  LGT++ Q+R ++  + +L  KK
Sbjct: 473 KPGQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAKK 509


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.132    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,783,043
Number of Sequences: 62578
Number of extensions: 164666
Number of successful extensions: 352
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 10
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)