BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031262
         (162 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q97LS0|GLMM_CLOAB Phosphoglucosamine mutase OS=Clostridium acetobutylicum (strain
           ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
           GN=glmM PE=3 SV=1
          Length = 448

 Score = 33.1 bits (74), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 81  QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKK 130
            G    T +   R+L   V V+        INC CG++  EE +D  +KK
Sbjct: 182 NGAAYKTAVKTFRELGAQVTVINNDPDGININCNCGSTHPEELMDYVVKK 231


>sp|Q80YR4|ZN598_MOUSE Zinc finger protein 598 OS=Mus musculus GN=Znf598 PE=2 SV=1
          Length = 908

 Score = 31.6 bits (70), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 27  TNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLG 86
           T  G ++ L + +PPP P     D     P L  S  S C A  P     AL   GP  G
Sbjct: 417 TGPGPVVALSNTLPPPSPELKEED----FPSLCASTSSCCTAVTPGSVGLALAYPGPPRG 472


>sp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1
           SV=1
          Length = 450

 Score = 30.4 bits (67), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 25/137 (18%)

Query: 30  GDLLTLLHVVPP---------PKPNT-SHHDSSACCPYLANSLGSLCKACKPEVEV---- 75
            DL T L   PP         P P T S+      CP  ++SL S  K  +P VEV    
Sbjct: 317 NDLHTELESTPPSSSSLHPLTPTPQTLSYRVKEELCP--SSSLPS-PKGQQPRVEVRLRE 373

Query: 76  -EALVIQ---GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKA 131
            +A+ I    G + G ++S +R L+     LG     A I+CF G +      +QC +  
Sbjct: 374 GKAVNIHMFCGRRPGLLLSTMRALDN----LGLDVQQAVISCFNGFALDVFRAEQCQEDH 429

Query: 132 DCLTVGVRKQSKGMGGY 148
           D L   ++       GY
Sbjct: 430 DVLPEQIKAVLLDTAGY 446


>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35
           PE=1 SV=2
          Length = 835

 Score = 30.4 bits (67), Expect = 5.4,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 19/127 (14%)

Query: 3   KRVMVVVDQTSHSKHAMMWALTHVTNKGDL-LTLLHV------VPPPKPNT---SHHDSS 52
           + V+V +  +S SK+ + WA+     +G++   LLH+      VP P  N    S     
Sbjct: 20  RTVVVALSGSSKSKYVVTWAIEKFATEGNVGFKLLHIHPMITSVPTPMGNAIPISEVRDD 79

Query: 53  ACCPYLANSLGSLCKACKP--------EVEVEALVIQGPKLGTVMS-QVRKLEVSVLVLG 103
               Y    L    +  KP        +V VE LVI+   +   ++ +V +  +  +V+G
Sbjct: 80  VVTAYRQEILWQSEEMLKPYTKLFVRRKVAVEVLVIESDNVAAAIAEEVTRDSIDRIVIG 139

Query: 104 QKKHSAF 110
               S F
Sbjct: 140 GSSRSFF 146


>sp|P95192|Y3134_MYCTU Universal stress protein Rv3134c/MT3220 OS=Mycobacterium
          tuberculosis GN=Rv3134c PE=2 SV=1
          Length = 268

 Score = 30.0 bits (66), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 3  KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPP 41
          + V+V +D +  + HA +WA+    N+   L L++V+ P
Sbjct: 8  RAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDP 46


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.132    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,970,842
Number of Sequences: 539616
Number of extensions: 2161846
Number of successful extensions: 5512
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 5510
Number of HSP's gapped (non-prelim): 26
length of query: 162
length of database: 191,569,459
effective HSP length: 108
effective length of query: 54
effective length of database: 133,290,931
effective search space: 7197710274
effective search space used: 7197710274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)