Query 031262
Match_columns 162
No_of_seqs 120 out of 1399
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 11:36:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15005 universal stress prot 100.0 6E-28 1.3E-32 168.7 13.4 133 1-139 1-144 (144)
2 PRK15456 universal stress prot 100.0 7.4E-28 1.6E-32 168.3 13.6 132 1-139 1-142 (142)
3 cd01989 STK_N The N-terminal d 99.9 4.1E-26 8.8E-31 159.9 14.2 132 4-140 1-145 (146)
4 PRK09982 universal stress prot 99.9 1.6E-26 3.5E-31 161.8 10.6 133 1-142 2-141 (142)
5 PRK15118 universal stress glob 99.9 1E-25 2.2E-30 157.7 10.4 133 1-143 2-142 (144)
6 PF00582 Usp: Universal stress 99.9 3.4E-25 7.3E-30 151.9 7.7 133 1-139 1-140 (140)
7 PRK10116 universal stress prot 99.9 3.6E-24 7.8E-29 149.3 11.3 133 1-142 2-141 (142)
8 cd01988 Na_H_Antiporter_C The 99.9 9.9E-24 2.1E-28 144.8 12.3 129 4-139 1-132 (132)
9 PRK11175 universal stress prot 99.9 2.4E-23 5.1E-28 162.0 13.0 147 1-152 2-159 (305)
10 cd01987 USP_OKCHK USP domain i 99.9 3.1E-23 6.7E-28 141.5 11.6 123 4-139 1-124 (124)
11 PRK11175 universal stress prot 99.9 9.6E-22 2.1E-26 153.0 11.3 134 2-142 152-302 (305)
12 COG0589 UspA Universal stress 99.8 1.3E-19 2.9E-24 126.7 14.7 134 1-141 4-153 (154)
13 cd00293 USP_Like Usp: Universa 99.8 6.1E-20 1.3E-24 124.4 12.6 129 4-138 1-130 (130)
14 PRK12652 putative monovalent c 99.7 3E-16 6.6E-21 124.3 12.5 136 1-142 4-153 (357)
15 PRK10490 sensor protein KdpD; 99.2 2.1E-10 4.5E-15 101.2 13.4 126 2-142 250-376 (895)
16 COG2205 KdpD Osmosensitive K+ 99.0 3.4E-09 7.3E-14 90.4 11.7 127 3-143 249-377 (890)
17 cd01984 AANH_like Adenine nucl 98.8 2.5E-08 5.4E-13 63.6 6.6 84 5-137 1-85 (86)
18 PLN03159 cation/H(+) antiporte 97.5 0.0033 7.2E-08 55.7 13.4 140 3-143 459-618 (832)
19 TIGR02432 lysidine_TilS_N tRNA 97.2 0.005 1.1E-07 44.7 9.6 97 4-111 1-114 (189)
20 PF01171 ATP_bind_3: PP-loop f 97.2 0.0071 1.5E-07 43.8 9.9 97 4-111 1-111 (182)
21 cd01992 PP-ATPase N-terminal d 96.8 0.02 4.2E-07 41.3 9.8 97 4-111 1-111 (185)
22 PLN03159 cation/H(+) antiporte 96.7 0.042 9.1E-07 48.9 12.6 39 3-41 631-669 (832)
23 COG0037 MesJ tRNA(Ile)-lysidin 96.3 0.075 1.6E-06 41.2 10.6 98 3-111 22-135 (298)
24 cd01993 Alpha_ANH_like_II This 95.6 0.34 7.4E-06 34.6 10.7 96 4-110 1-120 (185)
25 PRK10696 tRNA 2-thiocytidine b 95.2 0.28 6E-06 37.6 9.4 96 2-111 29-146 (258)
26 PF01012 ETF: Electron transfe 93.8 1.2 2.6E-05 31.4 9.5 88 4-107 1-101 (164)
27 PRK03359 putative electron tra 93.4 1.8 4E-05 33.2 10.4 101 11-136 34-143 (256)
28 PRK10660 tilS tRNA(Ile)-lysidi 93.1 1.1 2.3E-05 37.1 9.5 96 3-111 16-125 (436)
29 PRK07313 phosphopantothenoylcy 93.1 0.95 2.1E-05 32.9 8.1 114 2-140 1-121 (182)
30 PRK12342 hypothetical protein; 92.8 3.5 7.5E-05 31.7 11.2 100 11-136 33-140 (254)
31 PRK13820 argininosuccinate syn 92.8 3.1 6.8E-05 34.0 11.4 90 1-107 1-120 (394)
32 PRK05253 sulfate adenylyltrans 92.7 2.1 4.5E-05 33.7 10.1 92 3-107 28-138 (301)
33 TIGR00591 phr2 photolyase PhrI 92.2 0.67 1.4E-05 38.4 7.1 91 10-105 32-122 (454)
34 TIGR00268 conserved hypothetic 91.4 4.2 9.2E-05 30.9 10.3 89 2-107 12-118 (252)
35 PRK05579 bifunctional phosphop 90.9 3.1 6.6E-05 34.1 9.5 117 2-141 6-125 (399)
36 PF00875 DNA_photolyase: DNA p 90.6 0.46 1E-05 33.6 4.1 118 10-140 8-125 (165)
37 PRK13982 bifunctional SbtC-lik 90.6 2.7 5.9E-05 35.2 9.0 119 2-143 70-191 (475)
38 COG2086 FixA Electron transfer 90.4 6.8 0.00015 30.2 11.3 105 10-141 34-147 (260)
39 cd01713 PAPS_reductase This do 89.7 5.1 0.00011 27.7 9.8 95 4-112 1-121 (173)
40 TIGR01162 purE phosphoribosyla 89.2 5 0.00011 28.5 8.3 70 59-143 14-87 (156)
41 TIGR02039 CysD sulfate adenyly 88.8 8.5 0.00018 30.2 10.1 92 3-107 20-130 (294)
42 cd01995 ExsB ExsB is a transcr 88.8 6.5 0.00014 27.7 9.9 85 4-108 1-88 (169)
43 PLN00200 argininosuccinate syn 88.3 13 0.00028 30.6 12.3 92 1-107 4-124 (404)
44 TIGR02113 coaC_strep phosphopa 88.3 4.4 9.5E-05 29.3 7.7 115 3-140 1-120 (177)
45 PF02601 Exonuc_VII_L: Exonucl 87.8 2.6 5.7E-05 33.2 6.9 81 54-139 24-114 (319)
46 TIGR00521 coaBC_dfp phosphopan 87.7 7.6 0.00017 31.7 9.6 118 2-140 3-120 (390)
47 cd01990 Alpha_ANH_like_I This 87.4 9.1 0.0002 27.8 10.3 88 5-108 1-107 (202)
48 COG0041 PurE Phosphoribosylcar 86.7 8.4 0.00018 27.3 8.0 62 71-145 28-93 (162)
49 TIGR02765 crypto_DASH cryptoch 86.3 5.1 0.00011 32.9 8.0 92 10-106 10-106 (429)
50 KOG1650 Predicted K+/H+-antipo 86.0 3.4 7.4E-05 36.8 7.1 103 3-107 615-723 (769)
51 TIGR00342 thiazole biosynthesi 85.3 18 0.0004 29.3 11.2 92 2-107 172-286 (371)
52 PF00731 AIRC: AIR carboxylase 84.6 12 0.00025 26.4 8.8 74 56-144 13-90 (150)
53 TIGR00884 guaA_Cterm GMP synth 83.3 21 0.00045 28.3 10.7 92 3-109 17-130 (311)
54 TIGR03556 photolyase_8HDF deox 83.1 4.3 9.3E-05 34.0 6.3 90 10-105 10-99 (471)
55 PRK12563 sulfate adenylyltrans 82.4 19 0.0004 28.6 9.2 91 3-106 38-147 (312)
56 PRK10867 signal recognition pa 82.3 22 0.00047 29.6 10.0 92 5-111 104-198 (433)
57 PF00448 SRP54: SRP54-type pro 82.0 16 0.00035 26.7 8.3 93 4-112 4-99 (196)
58 PF02844 GARS_N: Phosphoribosy 81.9 1.4 3.1E-05 28.8 2.4 25 82-106 48-72 (100)
59 PRK00286 xseA exodeoxyribonucl 81.6 6.7 0.00015 32.4 6.8 82 54-140 145-232 (438)
60 cd01986 Alpha_ANH_like Adenine 81.5 11 0.00025 24.1 7.9 74 5-109 1-74 (103)
61 PRK09423 gldA glycerol dehydro 80.8 15 0.00032 29.6 8.4 69 58-141 44-117 (366)
62 TIGR02852 spore_dpaB dipicolin 79.4 22 0.00047 26.0 8.2 123 3-143 1-127 (187)
63 PRK00074 guaA GMP synthase; Re 78.1 42 0.00091 28.5 10.9 94 3-111 216-331 (511)
64 cd05565 PTS_IIB_lactose PTS_II 77.8 7 0.00015 25.5 4.7 68 56-141 14-81 (99)
65 cd08550 GlyDH-like Glycerol_de 77.6 15 0.00033 29.3 7.6 69 58-141 37-110 (349)
66 cd01712 ThiI ThiI is required 77.3 23 0.0005 25.1 10.9 35 4-42 1-35 (177)
67 PF03808 Glyco_tran_WecB: Glyc 77.3 23 0.00051 25.2 8.5 50 58-107 60-112 (172)
68 PRK08091 ribulose-phosphate 3- 77.2 26 0.00056 26.5 8.2 49 56-105 160-209 (228)
69 TIGR00237 xseA exodeoxyribonuc 76.5 13 0.00029 30.8 7.1 83 53-140 138-227 (432)
70 cd01985 ETF The electron trans 76.3 25 0.00054 25.0 10.8 86 4-108 1-103 (181)
71 PRK00509 argininosuccinate syn 75.8 44 0.00095 27.5 11.6 38 1-41 1-38 (399)
72 PRK06029 3-octaprenyl-4-hydrox 75.3 5.7 0.00012 29.0 4.2 117 2-141 1-124 (185)
73 PRK05920 aromatic acid decarbo 75.2 6.3 0.00014 29.2 4.4 36 1-37 2-37 (204)
74 PRK08576 hypothetical protein; 74.5 42 0.00091 28.0 9.4 85 4-105 236-339 (438)
75 COG1646 Predicted phosphate-bi 74.3 31 0.00068 26.2 7.8 71 84-161 29-105 (240)
76 PRK06395 phosphoribosylamine-- 74.2 22 0.00048 29.4 7.8 31 1-36 1-31 (435)
77 TIGR01769 GGGP geranylgeranylg 73.9 8.2 0.00018 28.7 4.7 69 86-161 14-88 (205)
78 PRK04527 argininosuccinate syn 73.7 50 0.0011 27.2 11.2 101 1-107 1-120 (400)
79 TIGR00853 pts-lac PTS system, 72.0 9.9 0.00021 24.4 4.3 68 58-143 19-86 (95)
80 PRK00919 GMP synthase subunit 71.1 50 0.0011 26.1 10.6 38 2-42 21-58 (307)
81 PRK00109 Holliday junction res 70.7 6.5 0.00014 27.2 3.4 52 85-141 43-98 (138)
82 COG1570 XseA Exonuclease VII, 70.5 28 0.00061 29.0 7.4 66 71-140 161-233 (440)
83 COG0541 Ffh Signal recognition 70.4 54 0.0012 27.4 9.0 95 5-115 104-201 (451)
84 COG0452 Dfp Phosphopantothenoy 70.4 26 0.00056 28.7 7.3 121 2-145 4-126 (392)
85 PRK06027 purU formyltetrahydro 70.2 50 0.0011 25.8 9.6 84 2-107 89-176 (286)
86 COG1927 Mtd Coenzyme F420-depe 70.2 22 0.00048 26.7 6.1 48 85-141 49-96 (277)
87 PRK14057 epimerase; Provisiona 69.9 48 0.0011 25.5 11.1 51 54-105 172-223 (254)
88 TIGR02699 archaeo_AfpA archaeo 69.8 39 0.00085 24.4 8.1 121 4-143 1-126 (174)
89 TIGR00959 ffh signal recogniti 69.8 58 0.0013 27.1 9.2 92 5-111 103-197 (428)
90 PRK11070 ssDNA exonuclease Rec 69.6 74 0.0016 27.6 10.1 94 2-107 69-162 (575)
91 PF12683 DUF3798: Protein of u 69.5 19 0.00042 27.9 5.9 93 4-107 4-97 (275)
92 cd00408 DHDPS-like Dihydrodipi 69.4 49 0.0011 25.3 8.8 83 56-143 50-134 (281)
93 PRK05370 argininosuccinate syn 68.9 39 0.00084 28.3 7.9 101 2-109 11-135 (447)
94 PRK09590 celB cellobiose phosp 68.2 15 0.00032 24.2 4.5 71 57-143 16-86 (104)
95 cd06375 PBP1_mGluR_groupII Lig 68.1 69 0.0015 26.6 10.3 26 83-108 243-268 (458)
96 TIGR00032 argG argininosuccina 67.8 68 0.0015 26.4 10.8 86 4-107 1-117 (394)
97 COG1606 ATP-utilizing enzymes 67.8 55 0.0012 25.3 10.4 88 3-106 18-123 (269)
98 COG0434 SgcQ Predicted TIM-bar 67.7 38 0.00082 26.0 7.0 48 82-138 163-211 (263)
99 PRK00994 F420-dependent methyl 67.6 26 0.00057 26.8 6.2 47 86-141 50-96 (277)
100 COG0069 GltB Glutamate synthas 67.3 35 0.00076 28.8 7.4 69 55-135 287-355 (485)
101 cd03364 TOPRIM_DnaG_primases T 65.7 18 0.00039 22.0 4.4 33 3-35 44-76 (79)
102 PLN02285 methionyl-tRNA formyl 65.5 44 0.00096 26.7 7.6 44 62-107 60-104 (334)
103 TIGR00696 wecB_tagA_cpsF bacte 65.1 34 0.00073 24.7 6.3 43 61-106 64-110 (177)
104 COG1911 RPL30 Ribosomal protei 64.9 12 0.00027 24.3 3.5 52 85-146 24-75 (100)
105 PF02441 Flavoprotein: Flavopr 64.4 15 0.00032 24.8 4.1 116 3-142 1-120 (129)
106 PLN02948 phosphoribosylaminoim 64.0 97 0.0021 26.8 12.3 72 57-143 424-499 (577)
107 PF01008 IF-2B: Initiation fac 63.7 65 0.0014 24.7 9.0 59 72-141 158-219 (282)
108 cd08171 GlyDH-like2 Glycerol d 62.9 46 0.001 26.5 7.3 68 59-141 38-111 (345)
109 PRK14665 mnmA tRNA-specific 2- 62.2 84 0.0018 25.5 12.2 91 2-107 5-124 (360)
110 PRK06988 putative formyltransf 62.1 72 0.0016 25.2 8.1 86 1-106 1-87 (312)
111 cd01997 GMP_synthase_C The C-t 61.7 77 0.0017 24.9 9.7 90 4-108 1-112 (295)
112 COG0415 PhrB Deoxyribodipyrimi 61.0 45 0.00098 28.0 7.0 90 10-106 11-100 (461)
113 cd06533 Glyco_transf_WecG_TagA 60.8 58 0.0013 23.2 8.0 69 58-137 58-129 (171)
114 PRK08745 ribulose-phosphate 3- 60.6 70 0.0015 24.0 11.1 49 56-105 152-201 (223)
115 PRK10674 deoxyribodipyrimidine 60.4 84 0.0018 26.3 8.7 90 10-105 11-105 (472)
116 cd05564 PTS_IIB_chitobiose_lic 60.3 24 0.00052 22.6 4.4 68 58-143 15-82 (96)
117 COG0329 DapA Dihydrodipicolina 60.1 82 0.0018 24.7 9.2 116 14-143 22-141 (299)
118 PF01645 Glu_synthase: Conserv 59.9 43 0.00093 27.3 6.6 52 54-106 186-237 (368)
119 COG1184 GCD2 Translation initi 59.8 86 0.0019 24.8 10.4 60 72-143 170-232 (301)
120 TIGR00250 RNAse_H_YqgF RNAse H 59.7 15 0.00032 25.1 3.4 51 85-141 37-92 (130)
121 TIGR01425 SRP54_euk signal rec 59.7 1E+02 0.0022 25.7 9.5 92 5-112 104-198 (429)
122 PRK14664 tRNA-specific 2-thiou 59.3 95 0.0021 25.2 10.4 86 2-107 5-119 (362)
123 PRK00143 mnmA tRNA-specific 2- 58.8 93 0.002 24.9 10.6 99 3-108 1-128 (346)
124 COG0036 Rpe Pentose-5-phosphat 58.8 76 0.0017 23.9 11.5 50 54-105 149-199 (220)
125 PF13662 Toprim_4: Toprim doma 58.1 15 0.00033 22.5 3.0 32 3-34 47-78 (81)
126 TIGR00683 nanA N-acetylneurami 58.0 57 0.0012 25.4 6.9 79 57-143 55-139 (290)
127 TIGR00655 PurU formyltetrahydr 57.5 90 0.0019 24.3 9.1 83 2-106 84-170 (280)
128 PF15366 DUF4597: Domain of un 57.5 9.8 0.00021 22.0 1.8 30 129-160 18-47 (62)
129 TIGR00290 MJ0570_dom MJ0570-re 57.1 82 0.0018 23.7 8.9 90 4-106 2-95 (223)
130 PRK04147 N-acetylneuraminate l 56.5 44 0.00096 25.9 6.1 53 85-143 88-141 (293)
131 TIGR00524 eIF-2B_rel eIF-2B al 56.5 98 0.0021 24.4 8.5 43 93-140 194-239 (303)
132 cd02067 B12-binding B12 bindin 56.2 54 0.0012 21.4 5.9 47 61-110 18-64 (119)
133 TIGR03573 WbuX N-acetyl sugar 55.1 1.1E+02 0.0023 24.5 10.1 88 4-107 61-171 (343)
134 PF07355 GRDB: Glycine/sarcosi 54.9 47 0.001 26.8 5.9 49 85-138 69-117 (349)
135 PF03652 UPF0081: Uncharacteri 54.9 30 0.00064 23.8 4.3 54 83-142 38-97 (135)
136 PRK09722 allulose-6-phosphate 54.8 91 0.002 23.6 11.1 51 54-105 148-199 (229)
137 PHA02031 putative DnaG-like pr 53.5 26 0.00056 27.2 4.1 37 2-38 206-242 (266)
138 PRK13010 purU formyltetrahydro 53.3 1.1E+02 0.0024 24.0 9.6 82 3-106 94-179 (289)
139 cd06361 PBP1_GPC6A_like Ligand 53.3 1.2E+02 0.0027 24.6 10.9 37 72-108 234-270 (403)
140 cd07186 CofD_like LPPG:FO 2-ph 53.0 45 0.00098 26.4 5.5 49 84-140 173-223 (303)
141 cd07044 CofD_YvcK Family of Co 52.2 27 0.00059 27.7 4.2 50 84-141 164-215 (309)
142 PF05728 UPF0227: Uncharacteri 51.6 74 0.0016 23.1 6.2 44 85-141 46-90 (187)
143 COG0615 TagD Cytidylyltransfer 51.4 19 0.00042 25.1 2.9 59 73-142 63-121 (140)
144 PF02887 PK_C: Pyruvate kinase 51.3 25 0.00055 23.2 3.5 43 85-141 5-48 (117)
145 PF07302 AroM: AroM protein; 50.9 1.1E+02 0.0023 23.2 9.7 43 85-139 164-209 (221)
146 TIGR01743 purR_Bsub pur operon 50.9 88 0.0019 24.3 6.7 46 86-144 118-163 (268)
147 cd08173 Gro1PDH Sn-glycerol-1- 50.7 1E+02 0.0022 24.5 7.4 68 57-141 39-111 (339)
148 TIGR02766 crypt_chrom_pln cryp 50.4 80 0.0017 26.4 7.0 88 10-105 7-96 (475)
149 PF01884 PcrB: PcrB family; I 50.4 38 0.00082 25.7 4.6 67 85-161 21-94 (230)
150 PF02571 CbiJ: Precorrin-6x re 50.2 82 0.0018 24.1 6.5 57 80-147 177-234 (249)
151 cd01994 Alpha_ANH_like_IV This 50.0 98 0.0021 22.6 11.2 91 4-106 1-98 (194)
152 COG1440 CelA Phosphotransferas 49.7 51 0.0011 21.7 4.5 66 58-141 17-82 (102)
153 TIGR01826 CofD_related conserv 49.5 37 0.0008 27.0 4.6 50 84-141 162-213 (310)
154 TIGR00646 MG010 DNA primase-re 49.4 45 0.00098 25.1 4.8 35 3-37 155-189 (218)
155 cd01029 TOPRIM_primases TOPRIM 49.3 52 0.0011 19.6 4.5 30 3-32 44-73 (79)
156 COG1066 Sms Predicted ATP-depe 49.2 24 0.00052 29.3 3.6 38 85-129 199-236 (456)
157 COG0669 CoaD Phosphopantethein 48.5 98 0.0021 22.1 9.2 93 1-111 1-97 (159)
158 COG0816 Predicted endonuclease 48.2 40 0.00088 23.5 4.1 55 84-141 41-97 (141)
159 PRK10653 D-ribose transporter 48.1 1.1E+02 0.0025 23.1 7.2 74 55-141 41-116 (295)
160 TIGR00674 dapA dihydrodipicoli 48.0 1.3E+02 0.0027 23.2 8.9 80 58-143 53-135 (285)
161 PRK01269 tRNA s(4)U8 sulfurtra 47.9 1.7E+02 0.0037 24.6 11.1 34 3-40 178-211 (482)
162 cd08170 GlyDH Glycerol dehydro 47.5 1.4E+02 0.0031 23.7 8.1 71 57-141 36-110 (351)
163 cd01714 ETF_beta The electron 47.5 1.1E+02 0.0024 22.4 9.0 82 8-107 30-119 (202)
164 cd00952 CHBPH_aldolase Trans-o 47.4 1.3E+02 0.0028 23.6 7.4 81 57-143 62-146 (309)
165 COG2876 AroA 3-deoxy-D-arabino 47.3 1.4E+02 0.0029 23.4 7.3 86 12-108 54-140 (286)
166 PLN02828 formyltetrahydrofolat 46.8 1.4E+02 0.0029 23.3 9.8 86 2-106 70-157 (268)
167 PRK08185 hypothetical protein; 46.8 21 0.00045 27.9 2.8 55 81-140 22-76 (283)
168 cd06322 PBP1_ABC_sugar_binding 46.7 1.2E+02 0.0025 22.4 7.2 74 55-141 14-89 (267)
169 PRK03170 dihydrodipicolinate s 46.4 1.4E+02 0.0029 23.1 9.3 77 61-143 59-138 (292)
170 cd08194 Fe-ADH6 Iron-containin 46.4 1E+02 0.0022 24.9 6.8 44 59-104 40-89 (375)
171 COG2102 Predicted ATPases of P 46.4 1.3E+02 0.0028 22.8 9.4 90 4-105 2-95 (223)
172 cd00950 DHDPS Dihydrodipicolin 46.1 1.3E+02 0.0029 23.0 9.1 53 85-143 84-137 (284)
173 COG0223 Fmt Methionyl-tRNA for 45.7 1.2E+02 0.0026 24.1 6.9 88 1-107 1-90 (307)
174 TIGR02855 spore_yabG sporulati 45.7 56 0.0012 25.5 4.9 36 71-106 127-163 (283)
175 PF13407 Peripla_BP_4: Peripla 45.3 1.2E+02 0.0026 22.2 7.1 74 55-141 13-89 (257)
176 cd01974 Nitrogenase_MoFe_beta 45.2 1.8E+02 0.0038 24.1 11.9 101 2-140 303-403 (435)
177 KOG0781 Signal recognition par 45.1 1.5E+02 0.0032 25.4 7.5 104 5-119 382-489 (587)
178 PRK15424 propionate catabolism 44.9 58 0.0013 27.9 5.4 68 55-141 22-92 (538)
179 PF05582 Peptidase_U57: YabG p 44.5 51 0.0011 25.8 4.6 36 71-106 128-164 (287)
180 PF01933 UPF0052: Uncharacteri 44.3 27 0.00058 27.6 3.1 51 84-142 173-225 (300)
181 COG0299 PurN Folate-dependent 44.1 1.3E+02 0.0028 22.3 10.3 129 3-153 1-152 (200)
182 cd02070 corrinoid_protein_B12- 42.8 97 0.0021 22.6 5.7 47 62-111 102-148 (201)
183 cd06389 PBP1_iGluR_AMPA_GluR2 42.8 1.7E+02 0.0038 23.3 9.5 91 2-106 118-214 (370)
184 cd07187 YvcK_like family of mo 42.8 52 0.0011 26.1 4.5 50 84-141 165-216 (308)
185 cd01996 Alpha_ANH_like_III Thi 42.4 1.1E+02 0.0024 20.9 9.7 34 4-40 3-36 (154)
186 PLN02331 phosphoribosylglycina 41.8 1.4E+02 0.0031 22.1 9.0 83 4-106 1-88 (207)
187 KOG0780 Signal recognition par 41.6 2.1E+02 0.0045 23.9 8.2 89 6-110 106-197 (483)
188 PF00834 Ribul_P_3_epim: Ribul 41.6 1.1E+02 0.0024 22.5 5.8 50 54-104 145-195 (201)
189 PRK09213 pur operon repressor; 41.4 1.3E+02 0.0029 23.3 6.5 46 86-144 120-165 (271)
190 smart00493 TOPRIM topoisomeras 41.3 45 0.00098 19.7 3.2 23 4-26 49-71 (76)
191 TIGR01918 various_sel_PB selen 41.3 98 0.0021 25.8 5.9 50 85-139 65-114 (431)
192 PF02878 PGM_PMM_I: Phosphoglu 41.1 65 0.0014 21.8 4.4 38 2-39 40-77 (137)
193 cd05569 PTS_IIB_fructose PTS_I 40.7 85 0.0018 20.0 4.6 49 58-108 17-65 (96)
194 cd00946 FBP_aldolase_IIA Class 40.6 68 0.0015 25.9 4.8 57 81-142 25-97 (345)
195 cd08172 GlyDH-like1 Glycerol d 40.5 1.7E+02 0.0038 23.2 7.3 44 85-141 65-109 (347)
196 TIGR02329 propionate_PrpR prop 40.5 1.3E+02 0.0028 25.8 6.8 67 56-141 13-82 (526)
197 PRK00211 sulfur relay protein 40.5 84 0.0018 21.0 4.7 37 2-39 1-41 (119)
198 PF13362 Toprim_3: Toprim doma 40.3 81 0.0018 19.7 4.5 36 2-37 41-78 (96)
199 cd07406 MPP_CG11883_N Drosophi 40.3 1.5E+02 0.0033 22.4 6.7 43 86-138 61-103 (257)
200 PRK10481 hypothetical protein; 40.2 1.6E+02 0.0035 22.2 10.2 108 16-138 76-212 (224)
201 COG0151 PurD Phosphoribosylami 39.9 28 0.0006 28.9 2.6 24 83-106 50-73 (428)
202 cd03466 Nitrogenase_NifN_2 Nit 39.8 2.2E+02 0.0047 23.5 12.1 46 77-140 353-398 (429)
203 PRK05720 mtnA methylthioribose 39.8 2E+02 0.0044 23.2 8.5 61 71-141 205-268 (344)
204 PRK13964 coaD phosphopantethei 39.6 1.3E+02 0.0028 20.9 9.0 93 3-111 2-97 (140)
205 PRK13011 formyltetrahydrofolat 39.4 1.8E+02 0.004 22.7 9.1 82 3-106 90-175 (286)
206 TIGR00420 trmU tRNA (5-methyla 38.9 2.1E+02 0.0045 23.1 11.4 96 3-106 1-127 (352)
207 TIGR01917 gly_red_sel_B glycin 38.8 35 0.00077 28.3 3.1 50 85-139 65-114 (431)
208 COG1162 Predicted GTPases [Gen 38.8 2E+02 0.0043 22.8 10.0 136 5-158 85-229 (301)
209 PRK00772 3-isopropylmalate deh 38.7 1.3E+02 0.0028 24.4 6.2 78 14-105 167-244 (358)
210 cd03557 L-arabinose_isomerase 38.7 1.7E+02 0.0036 24.9 7.1 77 54-141 17-100 (484)
211 PRK09197 fructose-bisphosphate 38.5 78 0.0017 25.6 4.9 86 55-143 6-103 (350)
212 cd06362 PBP1_mGluR Ligand bind 38.5 2.2E+02 0.0047 23.2 10.3 25 83-107 241-267 (452)
213 PRK08305 spoVFB dipicolinate s 38.4 73 0.0016 23.5 4.4 122 2-141 5-130 (196)
214 cd07405 MPP_UshA_N Escherichia 38.3 1.9E+02 0.004 22.4 9.2 45 85-139 64-108 (285)
215 cd08551 Fe-ADH iron-containing 38.2 1.5E+02 0.0031 23.8 6.6 20 85-104 69-89 (370)
216 cd01539 PBP1_GGBP Periplasmic 38.2 1.8E+02 0.0039 22.2 7.2 49 56-104 15-65 (303)
217 cd02812 PcrB_like PcrB_like pr 37.5 1E+02 0.0023 23.1 5.2 69 85-161 14-89 (219)
218 PRK13398 3-deoxy-7-phosphohept 37.5 1.9E+02 0.0042 22.3 11.4 85 12-108 37-122 (266)
219 TIGR01284 alt_nitrog_alph nitr 37.5 2.4E+02 0.0053 23.5 10.8 37 84-138 383-419 (457)
220 COG1597 LCB5 Sphingosine kinas 37.3 1.6E+02 0.0035 23.1 6.5 50 54-105 17-67 (301)
221 cd07408 MPP_SA0022_N Staphyloc 37.1 1.8E+02 0.0039 21.9 6.9 44 86-139 60-103 (257)
222 COG0562 Glf UDP-galactopyranos 37.1 37 0.00081 27.3 2.8 35 97-144 2-36 (374)
223 CHL00076 chlB photochlorophyll 36.9 44 0.00096 28.4 3.5 10 29-38 23-32 (513)
224 PLN02496 probable phosphopanto 36.8 87 0.0019 23.4 4.6 116 1-140 18-140 (209)
225 PRK08349 hypothetical protein; 36.8 1.6E+02 0.0035 21.2 10.3 34 3-40 1-34 (198)
226 TIGR00829 FRU PTS system, fruc 36.6 96 0.0021 19.4 4.2 46 60-107 18-63 (85)
227 cd08175 G1PDH Glycerol-1-phosp 36.6 1.6E+02 0.0035 23.4 6.5 66 60-141 40-113 (348)
228 TIGR02313 HpaI-NOT-DapA 2,4-di 36.2 2.1E+02 0.0045 22.3 9.5 82 56-143 53-138 (294)
229 PF02729 OTCace_N: Aspartate/o 35.9 43 0.00092 23.2 2.8 39 85-138 81-122 (142)
230 PRK10550 tRNA-dihydrouridine s 35.8 2.2E+02 0.0048 22.5 11.6 82 56-140 117-202 (312)
231 cd07766 DHQ_Fe-ADH Dehydroquin 35.7 2E+02 0.0044 22.5 6.9 44 85-141 67-113 (332)
232 cd01976 Nitrogenase_MoFe_alpha 35.2 2.6E+02 0.0055 23.1 9.6 47 77-141 350-396 (421)
233 PRK15411 rcsA colanic acid cap 35.2 1.8E+02 0.0038 21.2 8.1 71 57-141 11-86 (207)
234 cd01715 ETF_alpha The electron 35.1 51 0.0011 23.2 3.1 24 85-108 72-95 (168)
235 TIGR00169 leuB 3-isopropylmala 35.0 1.4E+02 0.0031 24.1 5.9 77 14-104 164-240 (349)
236 COG0788 PurU Formyltetrahydrof 34.7 81 0.0018 24.6 4.2 45 60-106 128-176 (287)
237 KOG2310 DNA repair exonuclease 34.7 35 0.00076 29.3 2.5 21 85-105 41-61 (646)
238 COG1504 Uncharacterized conser 34.6 60 0.0013 21.7 3.1 42 92-141 57-98 (121)
239 cd02072 Glm_B12_BD B12 binding 34.5 48 0.001 22.7 2.7 26 83-108 37-62 (128)
240 COG0284 PyrF Orotidine-5'-phos 34.5 1.1E+02 0.0025 23.2 5.1 32 3-39 12-43 (240)
241 cd00954 NAL N-Acetylneuraminic 34.4 2.2E+02 0.0047 22.0 9.7 53 85-143 85-139 (288)
242 PF00180 Iso_dh: Isocitrate/is 34.1 1.5E+02 0.0032 23.9 5.9 78 14-104 161-239 (348)
243 PRK06801 hypothetical protein; 34.1 46 0.001 26.1 2.9 55 82-141 28-83 (286)
244 TIGR00512 salvage_mtnA S-methy 34.1 2.5E+02 0.0054 22.6 8.7 43 93-140 222-267 (331)
245 PRK00843 egsA NAD(P)-dependent 33.8 2.3E+02 0.005 22.6 7.0 66 59-141 50-120 (350)
246 TIGR01862 N2-ase-Ialpha nitrog 33.8 2.8E+02 0.006 23.0 10.5 95 2-138 317-411 (443)
247 COG0391 Uncharacterized conser 33.6 75 0.0016 25.4 4.1 52 84-143 179-232 (323)
248 PRK02929 L-arabinose isomerase 33.6 2.1E+02 0.0046 24.4 6.9 75 54-140 23-105 (499)
249 PRK08057 cobalt-precorrin-6x r 33.5 1.2E+02 0.0026 23.2 5.1 44 89-143 183-226 (248)
250 PRK09195 gatY tagatose-bisphos 33.4 39 0.00086 26.4 2.5 55 81-140 27-82 (284)
251 PF03746 LamB_YcsF: LamB/YcsF 33.4 2.1E+02 0.0046 21.9 6.3 104 15-137 40-161 (242)
252 PF00701 DHDPS: Dihydrodipicol 33.3 2.2E+02 0.0049 21.8 7.5 78 59-141 57-136 (289)
253 PF13155 Toprim_2: Toprim-like 33.3 58 0.0013 20.3 2.9 28 3-30 48-75 (96)
254 COG2870 RfaE ADP-heptose synth 33.2 46 0.001 27.6 2.8 46 94-148 8-53 (467)
255 PRK06806 fructose-bisphosphate 33.2 53 0.0011 25.6 3.1 55 81-140 27-82 (281)
256 cd06313 PBP1_ABC_sugar_binding 33.0 2.1E+02 0.0045 21.3 7.0 73 56-141 15-89 (272)
257 smart00732 YqgFc Likely ribonu 32.5 1.2E+02 0.0026 18.8 4.3 55 85-142 40-94 (99)
258 PRK08591 acetyl-CoA carboxylas 32.5 2.8E+02 0.0061 22.8 7.8 34 1-39 1-34 (451)
259 PRK08384 thiamine biosynthesis 32.4 2.8E+02 0.0061 22.7 9.8 34 2-39 180-213 (381)
260 TIGR01858 tag_bisphos_ald clas 32.4 46 0.001 26.0 2.7 56 81-141 25-81 (282)
261 COG1609 PurR Transcriptional r 32.1 2.5E+02 0.0055 22.1 8.2 75 54-143 72-148 (333)
262 PRK09420 cpdB bifunctional 2', 32.1 3.6E+02 0.0077 23.8 8.6 97 29-139 22-143 (649)
263 PF03437 BtpA: BtpA family; I 32.0 2.1E+02 0.0046 22.0 6.2 23 85-107 161-183 (254)
264 cd01971 Nitrogenase_VnfN_like 31.8 2.9E+02 0.0064 22.7 10.3 102 3-142 294-399 (427)
265 cd02803 OYE_like_FMN_family Ol 31.6 2.5E+02 0.0054 21.9 9.5 85 56-140 192-289 (327)
266 cd01998 tRNA_Me_trans tRNA met 31.5 2.7E+02 0.0059 22.3 11.2 96 4-108 1-125 (349)
267 PRK12738 kbaY tagatose-bisphos 31.4 52 0.0011 25.8 2.8 56 81-141 27-83 (286)
268 TIGR01286 nifK nitrogenase mol 31.3 3.3E+02 0.0072 23.2 11.8 63 57-139 400-462 (515)
269 COG3340 PepE Peptidase E [Amin 31.2 2.3E+02 0.005 21.4 9.9 80 12-105 14-93 (224)
270 TIGR00364 exsB protein. This p 30.9 2.1E+02 0.0045 20.7 10.0 23 86-108 101-123 (201)
271 PRK03620 5-dehydro-4-deoxygluc 30.9 2.4E+02 0.0052 22.0 6.6 77 57-140 61-140 (303)
272 cd06318 PBP1_ABC_sugar_binding 30.8 2.2E+02 0.0048 21.0 7.8 74 55-141 14-89 (282)
273 PRK09419 bifunctional 2',3'-cy 30.7 4.2E+02 0.009 25.2 8.9 45 86-140 117-161 (1163)
274 TIGR01501 MthylAspMutase methy 30.6 60 0.0013 22.4 2.8 25 83-107 39-63 (134)
275 TIGR01390 CycNucDiestase 2',3' 30.4 3.8E+02 0.0081 23.5 9.9 43 87-139 78-120 (626)
276 PF01177 Asp_Glu_race: Asp/Glu 30.1 98 0.0021 22.3 4.1 41 86-136 161-205 (216)
277 cd06317 PBP1_ABC_sugar_binding 30.0 2.2E+02 0.0049 20.8 7.8 74 55-141 15-90 (275)
278 TIGR00514 accC acetyl-CoA carb 29.7 3.2E+02 0.0069 22.5 8.2 34 1-39 1-34 (449)
279 TIGR00289 conserved hypothetic 29.7 2.4E+02 0.0053 21.1 11.3 91 4-106 2-95 (222)
280 TIGR01283 nifE nitrogenase mol 29.6 86 0.0019 26.1 4.0 11 28-38 56-66 (456)
281 PF02568 ThiI: Thiamine biosyn 29.5 2.3E+02 0.005 20.8 10.5 92 3-105 4-117 (197)
282 PRK11907 bifunctional 2',3'-cy 29.5 4.3E+02 0.0093 24.2 8.4 42 88-139 193-234 (814)
283 PRK05772 translation initiatio 29.5 3.1E+02 0.0068 22.3 9.0 43 94-141 244-289 (363)
284 PF01507 PAPS_reduct: Phosphoa 29.5 1.9E+02 0.0041 19.8 8.0 88 4-108 1-111 (174)
285 PRK02628 nadE NAD synthetase; 29.5 3.6E+02 0.0079 23.9 8.0 37 2-38 361-400 (679)
286 COG1692 Calcineurin-like phosp 29.4 89 0.0019 24.1 3.7 24 85-108 48-71 (266)
287 PRK13602 putative ribosomal pr 29.4 1.1E+02 0.0025 18.9 3.7 20 86-105 17-36 (82)
288 COG4126 Hydantoin racemase [Am 29.4 60 0.0013 24.5 2.7 27 85-111 163-189 (230)
289 TIGR02634 xylF D-xylose ABC tr 29.3 2.6E+02 0.0057 21.3 7.6 17 88-104 46-62 (302)
290 PF09043 Lys-AminoMut_A: D-Lys 29.1 2E+02 0.0043 24.2 5.8 46 74-119 148-196 (509)
291 COG1697 DNA topoisomerase VI, 28.9 1.2E+02 0.0027 24.5 4.5 63 77-150 186-250 (356)
292 PRK14561 hypothetical protein; 28.9 2.3E+02 0.005 20.5 9.7 84 4-108 2-106 (194)
293 PRK13606 LPPG:FO 2-phospho-L-l 28.8 1.5E+02 0.0033 23.5 5.0 47 84-140 175-223 (303)
294 PRK12737 gatY tagatose-bisphos 28.7 57 0.0012 25.5 2.7 56 81-141 27-83 (284)
295 cd04795 SIS SIS domain. SIS (S 28.7 86 0.0019 18.7 3.1 30 4-34 49-78 (87)
296 PRK07178 pyruvate carboxylase 28.5 3.5E+02 0.0076 22.6 8.2 34 1-39 1-34 (472)
297 PRK05647 purN phosphoribosylgl 28.4 2.4E+02 0.0052 20.7 9.0 85 2-106 1-90 (200)
298 TIGR00511 ribulose_e2b2 ribose 28.3 3E+02 0.0064 21.7 10.7 40 96-140 183-225 (301)
299 CHL00073 chlN photochlorophyll 28.3 88 0.0019 26.3 3.8 50 56-107 83-139 (457)
300 TIGR00715 precor6x_red precorr 28.0 2.8E+02 0.006 21.3 7.4 56 77-143 177-234 (256)
301 PRK05452 anaerobic nitric oxid 27.9 3.7E+02 0.008 22.7 9.7 51 55-107 265-315 (479)
302 COG2179 Predicted hydrolase of 27.8 84 0.0018 22.7 3.1 79 4-105 37-119 (175)
303 PRK12857 fructose-1,6-bisphosp 27.7 61 0.0013 25.4 2.7 56 81-141 27-83 (284)
304 KOG1466 Translation initiation 27.7 3E+02 0.0066 21.6 7.9 41 96-141 198-241 (313)
305 PRK09558 ushA bifunctional UDP 27.6 3.9E+02 0.0084 22.8 9.5 100 30-140 32-143 (551)
306 TIGR01520 FruBisAldo_II_A fruc 27.4 1.7E+02 0.0037 23.8 5.2 83 56-141 13-108 (357)
307 TIGR00640 acid_CoA_mut_C methy 27.3 2E+02 0.0044 19.5 5.4 47 60-110 20-67 (132)
308 cd01971 Nitrogenase_VnfN_like 27.3 1E+02 0.0022 25.4 4.1 51 55-107 71-127 (427)
309 COG2201 CheB Chemotaxis respon 27.2 2.1E+02 0.0045 23.3 5.6 69 60-143 15-85 (350)
310 cd01999 Argininosuccinate_Synt 26.9 3.6E+02 0.0077 22.1 9.6 34 5-41 1-34 (385)
311 cd04724 Tryptophan_synthase_al 26.8 2.8E+02 0.006 20.9 7.8 73 61-137 120-192 (242)
312 PRK02910 light-independent pro 26.7 4E+02 0.0087 22.7 10.0 39 84-140 350-388 (519)
313 PRK11750 gltB glutamate syntha 26.7 2.8E+02 0.0061 27.1 7.0 69 54-134 979-1047(1485)
314 KOG1014 17 beta-hydroxysteroid 26.6 3.3E+02 0.0072 21.7 7.5 64 20-101 64-131 (312)
315 COG1058 CinA Predicted nucleot 26.6 2.8E+02 0.006 21.4 6.0 46 56-104 20-68 (255)
316 cd01297 D-aminoacylase D-amino 26.6 3.5E+02 0.0077 22.0 8.2 37 5-41 215-252 (415)
317 PRK04169 geranylgeranylglycery 26.6 1.4E+02 0.0031 22.6 4.4 68 86-161 22-95 (232)
318 cd06323 PBP1_ribose_binding Pe 26.4 2.6E+02 0.0056 20.4 6.6 73 56-141 15-89 (268)
319 KOG1465 Translation initiation 26.4 3.4E+02 0.0074 21.8 6.8 40 96-140 230-272 (353)
320 cd08185 Fe-ADH1 Iron-containin 26.2 3.5E+02 0.0076 21.8 7.7 46 58-105 42-93 (380)
321 PRK11106 queuosine biosynthesi 26.1 2.9E+02 0.0063 20.8 11.5 37 2-42 1-37 (231)
322 TIGR00930 2a30 K-Cl cotranspor 26.0 5.4E+02 0.012 24.0 11.1 95 4-106 577-677 (953)
323 cd05008 SIS_GlmS_GlmD_1 SIS (S 26.0 1.2E+02 0.0025 19.8 3.6 36 3-39 47-82 (126)
324 cd02071 MM_CoA_mut_B12_BD meth 25.9 85 0.0018 20.8 2.8 43 62-108 19-62 (122)
325 TIGR01768 GGGP-family geranylg 25.9 1.5E+02 0.0033 22.3 4.4 69 85-161 16-90 (223)
326 PRK05437 isopentenyl pyrophosp 25.9 3.5E+02 0.0076 21.7 8.5 50 55-107 171-221 (352)
327 PRK00766 hypothetical protein; 25.8 2E+02 0.0043 21.2 4.9 58 72-138 42-104 (194)
328 PRK06371 translation initiatio 25.8 3.5E+02 0.0077 21.7 8.9 44 92-140 211-257 (329)
329 PTZ00170 D-ribulose-5-phosphat 25.7 2.2E+02 0.0047 21.3 5.3 46 56-105 158-203 (228)
330 cd01536 PBP1_ABC_sugar_binding 25.7 2.6E+02 0.0057 20.2 7.3 73 56-141 15-89 (267)
331 PF00532 Peripla_BP_1: Peripla 25.4 3.1E+02 0.0067 20.9 9.4 74 55-143 16-90 (279)
332 PRK03692 putative UDP-N-acetyl 25.2 3.1E+02 0.0067 20.9 8.0 42 85-137 146-187 (243)
333 PF11215 DUF3010: Protein of u 25.2 2.3E+02 0.005 19.7 4.8 52 86-141 51-103 (138)
334 PF04459 DUF512: Protein of un 24.9 2.9E+02 0.0063 20.5 7.3 66 71-141 123-202 (204)
335 PF12745 HGTP_anticodon2: Anti 24.8 2.2E+02 0.0047 22.1 5.2 41 65-105 26-66 (273)
336 cd01968 Nitrogenase_NifE_I Nit 24.8 1.5E+02 0.0033 24.2 4.6 50 55-106 71-127 (410)
337 cd01972 Nitrogenase_VnfE_like 24.7 1.1E+02 0.0023 25.3 3.7 49 56-106 75-130 (426)
338 cd00947 TBP_aldolase_IIB Tagat 24.6 82 0.0018 24.5 2.9 57 81-142 22-79 (276)
339 cd06319 PBP1_ABC_sugar_binding 24.0 3E+02 0.0064 20.2 7.5 73 56-141 15-89 (277)
340 PRK06683 hypothetical protein; 24.0 1.8E+02 0.0038 18.1 3.8 44 86-139 17-60 (82)
341 PRK12569 hypothetical protein; 23.9 2.9E+02 0.0063 21.2 5.6 75 61-152 97-183 (245)
342 PF01784 NIF3: NIF3 (NGG1p int 23.9 1.1E+02 0.0025 22.9 3.5 66 72-140 29-96 (241)
343 PF14639 YqgF: Holliday-juncti 23.8 80 0.0017 22.1 2.5 23 85-107 52-74 (150)
344 COG1201 Lhr Lhr-like helicases 23.8 3.6E+02 0.0078 24.6 6.9 88 3-104 39-131 (814)
345 PF13433 Peripla_BP_5: Peripla 23.7 2.7E+02 0.0058 22.7 5.7 106 13-140 119-226 (363)
346 PF04244 DPRP: Deoxyribodipyri 23.7 1.8E+02 0.0039 21.9 4.5 73 60-142 49-127 (224)
347 PRK10886 DnaA initiator-associ 23.7 1.3E+02 0.0029 22.0 3.7 39 3-42 110-148 (196)
348 COG0622 Predicted phosphoester 23.5 2.2E+02 0.0047 20.5 4.7 36 75-110 82-123 (172)
349 TIGR00421 ubiX_pad polyprenyl 23.4 1.3E+02 0.0028 21.7 3.6 118 4-142 1-122 (181)
350 cd08177 MAR Maleylacetate redu 23.3 1.3E+02 0.0028 23.8 3.9 19 86-104 67-86 (337)
351 COG0552 FtsY Signal recognitio 23.3 4.1E+02 0.0088 21.5 8.6 94 5-114 143-239 (340)
352 PRK02261 methylaspartate mutas 23.2 98 0.0021 21.2 2.8 27 82-108 40-66 (137)
353 PRK07998 gatY putative fructos 23.1 72 0.0016 25.0 2.3 53 83-140 29-82 (283)
354 cd01967 Nitrogenase_MoFe_alpha 23.1 1.3E+02 0.0028 24.4 3.9 50 55-106 72-128 (406)
355 PRK05406 LamB/YcsF family prot 23.1 2.6E+02 0.0057 21.5 5.2 61 60-137 93-163 (246)
356 cd06374 PBP1_mGluR_groupI Liga 23.0 4.4E+02 0.0094 21.8 10.8 95 3-108 187-283 (472)
357 PF01380 SIS: SIS domain SIS d 23.0 1.4E+02 0.0031 19.3 3.6 36 3-39 54-89 (131)
358 cd06346 PBP1_ABC_ligand_bindin 22.9 3.5E+02 0.0076 20.7 9.7 50 56-107 151-203 (312)
359 PF06574 FAD_syn: FAD syntheta 22.9 2.8E+02 0.006 19.4 6.4 133 10-152 15-155 (157)
360 COG1036 Archaeal flavoproteins 22.8 1.6E+02 0.0035 21.3 3.7 62 81-143 73-136 (187)
361 cd06302 PBP1_LsrB_Quorum_Sensi 22.8 3.4E+02 0.0075 20.5 6.7 73 56-141 15-90 (298)
362 PRK03767 NAD(P)H:quinone oxido 22.8 2.3E+02 0.0049 20.5 4.8 38 1-39 1-40 (200)
363 PF01596 Methyltransf_3: O-met 22.7 1.5E+02 0.0033 21.8 3.9 49 56-106 80-131 (205)
364 PLN02476 O-methyltransferase 22.7 2.9E+02 0.0063 21.6 5.6 49 56-106 153-204 (278)
365 cd02173 ECT CTP:phosphoethanol 22.7 1.2E+02 0.0027 21.2 3.2 28 80-107 72-99 (152)
366 TIGR00735 hisF imidazoleglycer 22.6 3.4E+02 0.0074 20.5 6.9 51 85-140 157-207 (254)
367 PRK10799 metal-binding protein 22.6 1.3E+02 0.0028 22.8 3.6 27 75-101 35-61 (247)
368 TIGR01917 gly_red_sel_B glycin 22.5 1.4E+02 0.003 24.9 3.9 48 85-140 325-372 (431)
369 cd01538 PBP1_ABC_xylose_bindin 22.5 3.4E+02 0.0074 20.4 7.3 47 56-104 15-63 (288)
370 cd01981 Pchlide_reductase_B Pc 22.4 1.1E+02 0.0023 25.2 3.4 49 56-106 71-126 (430)
371 cd07409 MPP_CD73_N CD73 ecto-5 22.4 3.6E+02 0.0079 20.7 7.4 45 85-139 71-115 (281)
372 cd06296 PBP1_CatR_like Ligand- 22.4 3.2E+02 0.0069 20.0 7.8 16 88-103 47-62 (270)
373 TIGR01256 modA molybdenum ABC 22.2 2.2E+02 0.0048 20.4 4.7 33 71-105 19-51 (216)
374 cd06389 PBP1_iGluR_AMPA_GluR2 22.2 4.1E+02 0.0089 21.2 8.0 22 11-32 9-30 (370)
375 COG3865 Uncharacterized protei 22.2 2.3E+02 0.005 20.0 4.3 39 1-41 2-40 (151)
376 PLN02151 trehalose-phosphatase 22.1 4.3E+02 0.0094 21.5 8.2 46 54-107 121-166 (354)
377 PRK11889 flhF flagellar biosyn 21.9 4.8E+02 0.01 21.9 8.7 89 6-110 246-334 (436)
378 PF09623 Cas_NE0113: CRISPR-as 21.9 2.9E+02 0.0064 20.8 5.3 38 2-39 1-39 (224)
379 cd01537 PBP1_Repressors_Sugar_ 21.8 3.1E+02 0.0067 19.6 8.2 73 56-142 15-89 (264)
380 cd06320 PBP1_allose_binding Pe 21.8 3.3E+02 0.0072 20.0 8.8 73 56-141 15-91 (275)
381 PRK11914 diacylglycerol kinase 21.8 3.3E+02 0.0071 21.1 5.8 33 71-103 38-71 (306)
382 smart00851 MGS MGS-like domain 21.7 2.1E+02 0.0045 17.6 4.0 36 71-106 29-65 (90)
383 COG0159 TrpA Tryptophan syntha 21.6 3.9E+02 0.0085 20.8 7.3 13 125-137 198-210 (265)
384 cd06311 PBP1_ABC_sugar_binding 21.5 3.4E+02 0.0074 20.0 7.3 75 56-141 15-94 (274)
385 COG1412 Uncharacterized protei 21.3 1.3E+02 0.0029 20.8 3.1 44 81-141 83-126 (136)
386 PF12877 DUF3827: Domain of un 21.2 1.9E+02 0.0041 25.6 4.5 97 52-161 32-139 (684)
387 COG0426 FpaA Uncharacterized f 21.1 4.8E+02 0.01 21.6 9.7 47 56-106 261-307 (388)
388 PF01902 ATP_bind_4: ATP-bindi 21.1 3.6E+02 0.0078 20.1 10.7 118 4-129 2-166 (218)
389 cd08186 Fe-ADH8 Iron-containin 21.1 2.8E+02 0.0061 22.4 5.4 44 59-104 44-93 (383)
390 PRK08194 tartrate dehydrogenas 21.0 3.5E+02 0.0076 21.9 5.9 27 14-40 162-188 (352)
391 PRK06027 purU formyltetrahydro 20.9 4.1E+02 0.0089 20.7 8.8 72 54-140 62-145 (286)
392 PLN02347 GMP synthetase 20.9 5.5E+02 0.012 22.1 8.6 38 2-42 229-266 (536)
393 PRK08673 3-deoxy-7-phosphohept 20.6 4.5E+02 0.0099 21.1 9.5 83 14-108 105-188 (335)
394 cd01965 Nitrogenase_MoFe_beta_ 20.6 4.8E+02 0.01 21.4 10.1 44 79-140 354-397 (428)
395 PF13500 AAA_26: AAA domain; P 20.6 1E+02 0.0022 22.1 2.6 37 3-39 1-38 (199)
396 smart00852 MoCF_biosynth Proba 20.6 2.7E+02 0.0059 18.5 5.8 43 59-103 20-64 (135)
397 COG0644 FixC Dehydrogenases (f 20.5 97 0.0021 25.0 2.7 35 96-143 3-37 (396)
398 COG5049 XRN1 5'-3' exonuclease 20.3 1.2E+02 0.0025 27.3 3.1 55 81-143 187-263 (953)
399 PRK08535 translation initiatio 20.3 4.4E+02 0.0095 20.8 10.6 40 96-140 188-230 (310)
400 TIGR03572 WbuZ glycosyl amidat 20.3 3.6E+02 0.0079 19.8 7.0 51 85-140 155-205 (232)
401 PRK15454 ethanol dehydrogenase 20.2 4.4E+02 0.0096 21.5 6.4 40 60-101 67-111 (395)
402 PRK01130 N-acetylmannosamine-6 20.2 2E+02 0.0043 21.1 4.1 49 90-140 133-181 (221)
403 cd01858 NGP_1 NGP-1. Autoanti 20.2 2.9E+02 0.0064 18.8 6.3 35 82-116 80-124 (157)
404 TIGR00035 asp_race aspartate r 20.1 1.4E+02 0.003 22.2 3.3 16 92-107 71-86 (229)
405 TIGR03280 methan_mark_11 putat 20.1 4.4E+02 0.0096 20.8 7.2 12 2-13 132-143 (292)
406 cd08178 AAD_C C-terminal alcoh 20.1 2.9E+02 0.0062 22.5 5.3 46 58-105 37-88 (398)
407 COG1619 LdcA Uncharacterized p 20.1 4.1E+02 0.0089 21.2 6.0 96 7-110 16-115 (313)
408 cd07394 MPP_Vps29 Homo sapiens 20.0 2.8E+02 0.006 19.7 4.7 33 76-108 80-118 (178)
No 1
>PRK15005 universal stress protein F; Provisional
Probab=99.96 E-value=6e-28 Score=168.73 Aligned_cols=133 Identities=15% Similarity=0.292 Sum_probs=106.1
Q ss_pred CCcEEEEEeCCChh--hHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCC----Cc----cccchHHHHHHHHhHHHhC
Q 031262 1 MRKRVMVVVDQTSH--SKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHH----DS----SACCPYLANSLGSLCKACK 70 (162)
Q Consensus 1 m~~~Ilv~vD~S~~--s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~ 70 (162)
|+++||+|+|+|+. +..|++||.++|+..+++++++||+++........ .. ....++..+.++++++.+.
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFK 80 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999999997 57999999999999999999999997543221110 00 1122333345555555543
Q ss_pred -CCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 71 -PEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 71 -~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
++++++..+..|++.+.|+++++++++||||||+++ +.+.+.++||++ ++|+++++||||+||
T Consensus 81 ~~~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~llGS~a-----~~vl~~a~cpVlvVr 144 (144)
T PRK15005 81 LPTDRVHVHVEEGSPKDRILELAKKIPADMIIIASHR-PDITTYLLGSNA-----AAVVRHAECSVLVVR 144 (144)
T ss_pred CCCCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCCC-CCchheeecchH-----HHHHHhCCCCEEEeC
Confidence 567788889999999999999999999999999985 568899999999 999999999999986
No 2
>PRK15456 universal stress protein UspG; Provisional
Probab=99.96 E-value=7.4e-28 Score=168.32 Aligned_cols=132 Identities=21% Similarity=0.264 Sum_probs=103.6
Q ss_pred CCcEEEEEeCCCh--hhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCC---CC-c---cccchHHHHHHHHhHHHhC-
Q 031262 1 MRKRVMVVVDQTS--HSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSH---HD-S---SACCPYLANSLGSLCKACK- 70 (162)
Q Consensus 1 m~~~Ilv~vD~S~--~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~---~~-~---~~~~~~~~~~~~~~~~~~~- 70 (162)
|+++||+|+|+|+ .+..|+++|..+++. +++++++||+++....... .. . +...+...+.+.++++...
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~-~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQD-DGVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTI 79 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhc-CCeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 8999999999994 899999999999876 4699999999764321110 10 0 1111223334444554432
Q ss_pred CCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 71 PEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 71 ~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
.+++++..+..|++.+.|+++++++++||||||++|++ +.+.++||++ ++++++++||||+||
T Consensus 80 ~~~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a-----~~v~~~a~~pVLvV~ 142 (142)
T PRK15456 80 DPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNA-----SSVIRHANLPVLVVR 142 (142)
T ss_pred CCcceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCccH-----HHHHHcCCCCEEEeC
Confidence 56778889999999999999999999999999999976 7889999999 999999999999986
No 3
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.94 E-value=4.1e-26 Score=159.87 Aligned_cols=132 Identities=26% Similarity=0.359 Sum_probs=102.2
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCC-CC-C--c----cccchHHHHHHHHhHHHh-CCCCe
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTS-HH-D--S----SACCPYLANSLGSLCKAC-KPEVE 74 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~-~~-~--~----~~~~~~~~~~~~~~~~~~-~~~v~ 74 (162)
+||||+|+|+.|.+|++||++++...+++++++||.++...... .. . . .+..++..+.+++..+.. ..++.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 80 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSRKGVQ 80 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCe
Confidence 58999999999999999999999989999999999875432211 11 0 0 011122222233322221 26788
Q ss_pred EEEEEEec-CchhHHHHHHHhcCCCEEEEccCCCCcccccccc-cCCcchhHHHhhhhCC--ceEEEEec
Q 031262 75 VEALVIQG-PKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCG-TSSSEEFVDQCIKKAD--CLTVGVRK 140 (162)
Q Consensus 75 ~~~~v~~g-~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~G-s~~~~~~~~~v~~~~~--~pVlvv~~ 140 (162)
++..+..| ++.+.|++++++.++|+||||++|++.+.++++| |++ .+|+++++ |||++|++
T Consensus 81 ~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva-----~~Vi~~a~~~c~Vlvv~~ 145 (146)
T cd01989 81 CEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVA-----SSVLKEAPDFCTVYVVSK 145 (146)
T ss_pred EEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchh-----HHHHhcCCCCceEEEEeC
Confidence 88888776 8899999999999999999999999999999998 588 99999999 99999986
No 4
>PRK09982 universal stress protein UspD; Provisional
Probab=99.94 E-value=1.6e-26 Score=161.79 Aligned_cols=133 Identities=17% Similarity=0.080 Sum_probs=101.4
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCC--CCCCc-c----ccchHHHHHHHHhHHHhCCCC
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNT--SHHDS-S----ACCPYLANSLGSLCKACKPEV 73 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~--~~~~~-~----~~~~~~~~~~~~~~~~~~~~v 73 (162)
|+++||||+|+|+.|..|+++|..+|+..+++++++||.++..... ...+. . ...+...+.+++..+.. ...
T Consensus 2 ~~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 80 (142)
T PRK09982 2 AYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNI-QWP 80 (142)
T ss_pred CceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence 6799999999999999999999999999999999999987543211 10011 1 11112222334444332 234
Q ss_pred eEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 74 EVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 74 ~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
.++..+..|+|.+.|+++|++.++||||||++ ++.+.+++ | ++ ++++++++||||+||..+
T Consensus 81 ~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~~-~-va-----~~V~~~s~~pVLvv~~~~ 141 (142)
T PRK09982 81 KTKLRIERGEMPETLLEIMQKEQCDLLVCGHH-HSFINRLM-P-AY-----RGMINKMSADLLIVPFID 141 (142)
T ss_pred cceEEEEecCHHHHHHHHHHHcCCCEEEEeCC-hhHHHHHH-H-HH-----HHHHhcCCCCEEEecCCC
Confidence 57788888999999999999999999999986 77788777 5 77 999999999999998754
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.93 E-value=1e-25 Score=157.73 Aligned_cols=133 Identities=17% Similarity=0.147 Sum_probs=98.1
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCC-CCC-CC-cc----ccchHHHHHHHHhHHHhCCCC
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPN-TSH-HD-SS----ACCPYLANSLGSLCKACKPEV 73 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~-~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~v 73 (162)
|+++||+|+|+|+.+..|+++|..+|+..+++++++||..+.... ... .. .. ...++..+.++++... .++
T Consensus 2 ~~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~ 79 (144)
T PRK15118 2 AYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTN--AGY 79 (144)
T ss_pred CceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHh--CCC
Confidence 689999999999999999999999998889999999995332111 100 00 01 1112222334444433 455
Q ss_pred eE-EEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 74 EV-EALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 74 ~~-~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
++ ...+..|++.+.|+++|++.++||||||+|+ +.+. . +||++ ++|+++++||||+||.+..
T Consensus 80 ~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~-~-lgSva-----~~v~~~a~~pVLvv~~~~~ 142 (144)
T PRK15118 80 PITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-DFWS-K-LMSSA-----RQLINTVHVDMLIVPLRDE 142 (144)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc-cHHH-H-HHHHH-----HHHHhhCCCCEEEecCCcC
Confidence 54 3555689999999999999999999999996 3333 3 68999 9999999999999997543
No 6
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.92 E-value=3.4e-25 Score=151.85 Aligned_cols=133 Identities=21% Similarity=0.386 Sum_probs=102.6
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCc-cccchHHHHHHH------HhHHHhCCCC
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDS-SACCPYLANSLG------SLCKACKPEV 73 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~v 73 (162)
|.++||||+|+|+.+..+++||+.+++..+++++++|+.+........... ........+... ..+.. ....
T Consensus 1 M~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 79 (140)
T PF00582_consen 1 MYKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEA-EGGI 79 (140)
T ss_dssp -TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTS
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhh-hccc
Confidence 789999999999999999999999999999999999999776443111000 000000000000 01111 2456
Q ss_pred eEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 74 EVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 74 ~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
.....+..|++.+.|++++++.++|+||||+++++.+.+.++||++ ++++++++|||++||
T Consensus 80 ~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~-----~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 80 VIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVA-----EKLLRHAPCPVLVVP 140 (140)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHH-----HHHHHHTSSEEEEEE
T ss_pred eeEEEEEeeccchhhhhccccccceeEEEeccCCCCccCCCcCCHH-----HHHHHcCCCCEEEeC
Confidence 6777888899999999999999999999999999999999999999 999999999999996
No 7
>PRK10116 universal stress protein UspC; Provisional
Probab=99.91 E-value=3.6e-24 Score=149.32 Aligned_cols=133 Identities=15% Similarity=0.201 Sum_probs=101.7
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCC-Cc-----cccchHHHHHHHHhHHHhCCCCe
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHH-DS-----SACCPYLANSLGSLCKACKPEVE 74 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~v~ 74 (162)
|+++|||++|+|+.+..++++|+.+|+..+++++++|+++....+.... +. +...++..+.+++.+.. .+++
T Consensus 2 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~ 79 (142)
T PRK10116 2 SYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQD--ADYP 79 (142)
T ss_pred CCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh--cCCC
Confidence 6899999999999999999999999998999999999986543221111 10 11112222334444433 4554
Q ss_pred E-EEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 75 V-EALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 75 ~-~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
. ...+..|++.+.|++++++.++||||||+++++.+.+++ |++ ++++++++||||+||.+.
T Consensus 80 ~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~--s~a-----~~v~~~~~~pVLvv~~~~ 141 (142)
T PRK10116 80 IEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRAS--CSA-----KRVIASSEVDVLLVPLTG 141 (142)
T ss_pred eEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHHH--HHH-----HHHHhcCCCCEEEEeCCC
Confidence 4 366678999999999999999999999999998888764 777 999999999999998653
No 8
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.91 E-value=9.9e-24 Score=144.78 Aligned_cols=129 Identities=13% Similarity=0.237 Sum_probs=103.4
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCC--CCccccchHHHHHHHHhHHHhCCCCeEEEEEE-
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSH--HDSSACCPYLANSLGSLCKACKPEVEVEALVI- 80 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~- 80 (162)
+||||+|+|+.+..++++|..++...+++++++|+++........ ....+..++..+.+.+.+.+ .+++++..+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~ 78 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAAS--LGVPVHTIIRI 78 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhh--cCCceEEEEEe
Confidence 699999999999999999999999999999999999764332111 11112233444444444444 5677776664
Q ss_pred ecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 81 QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 81 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
.|++.+.|.++++++++|+||||+++++.+.+.++||++ .+++++++|||+++|
T Consensus 79 ~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~-----~~v~~~~~~pvlvv~ 132 (132)
T cd01988 79 DHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVI-----DQVLESAPCDVAVVK 132 (132)
T ss_pred cCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchH-----HHHHhcCCCCEEEeC
Confidence 478999999999999999999999999999899999999 999999999999986
No 9
>PRK11175 universal stress protein UspE; Provisional
Probab=99.90 E-value=2.4e-23 Score=162.03 Aligned_cols=147 Identities=12% Similarity=0.165 Sum_probs=112.7
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCC--CCCc--c----ccchHHHHHHHHhHHHh-CC
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTS--HHDS--S----ACCPYLANSLGSLCKAC-KP 71 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~--~~~~--~----~~~~~~~~~~~~~~~~~-~~ 71 (162)
|+++||+|+|+|+.+..|+++|+.+|+..+++++++|+.+....... .... . ...++..+.+++.+..+ ..
T Consensus 2 ~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (305)
T PRK11175 2 KYQNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPYLDA 81 (305)
T ss_pred CcceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 78999999999999999999999999999999999999854322111 1111 0 01122223344444332 25
Q ss_pred CCeEEEEEE-ecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCC-CCCcEE
Q 031262 72 EVEVEALVI-QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK-GMGGYI 149 (162)
Q Consensus 72 ~v~~~~~v~-~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~-~~~~~~ 149 (162)
+++++..+. .|++.+.|.++++++++||||||++|++.+.+.++||++ ++++++++||||+++.... ....++
T Consensus 82 ~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~-----~~l~~~~~~pvlvv~~~~~~~~~~Il 156 (305)
T PRK11175 82 GIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTD-----WHLLRKCPCPVLMVKDQDWPEGGKIL 156 (305)
T ss_pred CCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhH-----HHHHhcCCCCEEEecccccCCCCeEE
Confidence 778887766 589999999999999999999999999999999999999 9999999999999998543 234566
Q ss_pred Eec
Q 031262 150 IST 152 (162)
Q Consensus 150 ~~~ 152 (162)
+.+
T Consensus 157 va~ 159 (305)
T PRK11175 157 VAV 159 (305)
T ss_pred EEe
Confidence 643
No 10
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.90 E-value=3.1e-23 Score=141.47 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=100.9
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecC
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGP 83 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~ 83 (162)
+||+|+|+|+.+..+++||..++...+++|+++|+.++... ...+..++..+.+++.+.+ .++++. .+..|+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~-----~~~~~~~~~l~~~~~~~~~--~~~~~~-~~~~~~ 72 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLN-----RLSEAERRRLAEALRLAEE--LGAEVV-TLPGDD 72 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCHHHHHHHHHHHHHHHH--cCCEEE-EEeCCc
Confidence 69999999999999999999999999999999999975432 1122334455555655555 344443 334678
Q ss_pred chhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhC-CceEEEEe
Q 031262 84 KLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKA-DCLTVGVR 139 (162)
Q Consensus 84 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~-~~pVlvv~ 139 (162)
+.+.|.++++++++|+||||+++++.+.++++||++ +++++++ +|||+|+.
T Consensus 73 ~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~-----~~v~~~a~~~~v~v~~ 124 (124)
T cd01987 73 VAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLV-----DRLLRRAGNIDVHIVA 124 (124)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHH-----HHHHHhCCCCeEEEeC
Confidence 899999999999999999999999999999999999 9999999 99999974
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.87 E-value=9.6e-22 Score=153.00 Aligned_cols=134 Identities=14% Similarity=0.230 Sum_probs=102.4
Q ss_pred CcEEEEEeCCChhh-------HHHHHHHHHhccCC-CCEEEEEEEeCCCCCCCC-----CCCc---cccchHHHHHHHHh
Q 031262 2 RKRVMVVVDQTSHS-------KHAMMWALTHVTNK-GDLLTLLHVVPPPKPNTS-----HHDS---SACCPYLANSLGSL 65 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s-------~~al~~A~~~a~~~-~~~l~l~hv~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~ 65 (162)
.++||+|+|+|+.+ ..++++|..+++.. +++++++|+++....... ..+. +...++..+.++++
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 231 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKAL 231 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 47899999998753 67999999999887 999999999864332110 0110 11112223344555
Q ss_pred HHHhCCCCeE-EEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 66 CKACKPEVEV-EALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 66 ~~~~~~~v~~-~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
.+. .++.. ...+..|++.+.|.+++++.++||||||+++++.+.++++||++ ++|+++++||||+||++.
T Consensus 232 ~~~--~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a-----~~v~~~~~~pVLvv~~~~ 302 (305)
T PRK11175 232 RQK--FGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTA-----EHVIDHLNCDLLAIKPDG 302 (305)
T ss_pred HHH--hCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchH-----HHHHhcCCCCEEEEcCCC
Confidence 544 24443 46667899999999999999999999999999999999999999 999999999999998754
No 12
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.84 E-value=1.3e-19 Score=126.68 Aligned_cols=134 Identities=22% Similarity=0.364 Sum_probs=109.0
Q ss_pred CCcEEEEEeC-CChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCC-----C--------ccccchHHHHHHHHhH
Q 031262 1 MRKRVMVVVD-QTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHH-----D--------SSACCPYLANSLGSLC 66 (162)
Q Consensus 1 m~~~Ilv~vD-~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~-----~--------~~~~~~~~~~~~~~~~ 66 (162)
|+++|++++| +|+.+..+++++..++...+..+.++++.+......... . .....++..+.+++..
T Consensus 4 ~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 4 MYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred ccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5789999999 999999999999999998999999999986654321111 1 0222244444455555
Q ss_pred HHhCCCCe-EEEEEEecCc-hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 67 KACKPEVE-VEALVIQGPK-LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 67 ~~~~~~v~-~~~~v~~g~~-~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
.. .++. ++..+..|++ .+.|.++++++++|+||||++|++.+.++++||++ ++++++++|||++++..
T Consensus 84 ~~--~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs-----~~v~~~~~~pVlvv~~~ 153 (154)
T COG0589 84 EA--AGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVA-----EKVLRHAPCPVLVVRSE 153 (154)
T ss_pred HH--cCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhH-----HHHHhcCCCCEEEEccC
Confidence 55 5566 5888889999 79999999999999999999999999999999999 99999999999999874
No 13
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.84 E-value=6.1e-20 Score=124.41 Aligned_cols=129 Identities=26% Similarity=0.442 Sum_probs=102.5
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHh-CCCCeEEEEEEec
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKAC-KPEVEVEALVIQG 82 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~v~~g 82 (162)
+||||+|+++.+..+++||..+|+..+++++++|+.+....... ........+..+.+++..... ..++++...+..|
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAA-ELAELLEEEARALLEALREALAEAGVKVETVVLEG 79 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch-hHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 58999999999999999999999999999999999865433211 000111222233333333322 2678888888889
Q ss_pred CchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEE
Q 031262 83 PKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGV 138 (162)
Q Consensus 83 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv 138 (162)
++.+.|.+++++.++|+||||+++++.+.+.++|+++ ++++++++|||+++
T Consensus 80 ~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~-----~~ll~~~~~pvliv 130 (130)
T cd00293 80 DPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVA-----ERVLRHAPCPVLVV 130 (130)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHH-----HHHHhCCCCCEEeC
Confidence 9999999999999999999999999999899999999 99999999999985
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.70 E-value=3e-16 Score=124.35 Aligned_cols=136 Identities=10% Similarity=0.126 Sum_probs=94.4
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCC--CCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHh----CCCCe
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNK--GDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKAC----KPEVE 74 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~--~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~ 74 (162)
|++|||||+|+|+.|.+|+++|+++|+.. +++++++||.+...............+++.+.+++.+++. ..+++
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~ 83 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVT 83 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCc
Confidence 78999999999999999999999999874 6999999999754322111111233344555555544431 25788
Q ss_pred EEEEEEe--------cCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 75 VEALVIQ--------GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 75 ~~~~v~~--------g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
+++.+.. |++++.|+++|+++++|+||||-.-.-.-..-++-+ - +.-+.+++|.+=..+-..
T Consensus 84 ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~ 153 (357)
T PRK12652 84 IETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAPMLQP-L-----ERELARAGITYEEAPVER 153 (357)
T ss_pred eEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCcccch-H-----HHHHHhcCCceecCCccC
Confidence 8888765 899999999999999999999997532111111111 1 555677888776655443
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=99.22 E-value=2.1e-10 Score=101.16 Aligned_cols=126 Identities=12% Similarity=0.128 Sum_probs=96.3
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
..+||||+++|+.+..++++|.++|.+.+++++++||..+.... ...+....+.+.+ +++++. |.++. .+..
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~----~~~~~~~~l~~~~-~lA~~l--Ga~~~-~~~~ 321 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHR----LPEKKRRAILSAL-RLAQEL--GAETA-TLSD 321 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCc----CCHHHHHHHHHHH-HHHHHc--CCEEE-EEeC
Confidence 35799999999999999999999999999999999998653211 1112333444445 477773 43432 2234
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC-ceEEEEecCC
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD-CLTVGVRKQS 142 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~-~pVlvv~~~~ 142 (162)
+|..++|+++|++++++.||||.++++++ ++-||+. +++++.++ ..|.+|+...
T Consensus 322 ~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~~~s~~-----~~l~r~~~~idi~iv~~~~ 376 (895)
T PRK10490 322 PAEEKAVLRYAREHNLGKIIIGRRASRRW--WRRESFA-----DRLARLGPDLDLVIVALDE 376 (895)
T ss_pred CCHHHHHHHHHHHhCCCEEEECCCCCCCC--ccCCCHH-----HHHHHhCCCCCEEEEeCCc
Confidence 56799999999999999999999998876 4467888 99999995 9999997543
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.03 E-value=3.4e-09 Score=90.45 Aligned_cols=127 Identities=16% Similarity=0.149 Sum_probs=102.2
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe-
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ- 81 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~- 81 (162)
.+||||++.|+.+...+++|.++|.+.+++.+.+||..+..... .+..........++++++ | .++....
T Consensus 249 e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~-----~~~~~~~l~~~~~Lae~l--G--ae~~~l~~ 319 (890)
T COG2205 249 ERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRL-----SEKEARRLHENLRLAEEL--G--AEIVTLYG 319 (890)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccc-----cHHHHHHHHHHHHHHHHh--C--CeEEEEeC
Confidence 57999999999999999999999999999999999986553320 112344445566777773 3 3444444
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC-ceEEEEecCCC
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD-CLTVGVRKQSK 143 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~-~pVlvv~~~~~ 143 (162)
++..++|.+||+.+++.-||||.+.++.|.++|.||.. +++++..+ ..|.+|+....
T Consensus 320 ~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~-----~~L~~~~~~idv~ii~~~~~ 377 (890)
T COG2205 320 GDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLA-----DRLAREAPGIDVHIVALDAP 377 (890)
T ss_pred CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHH-----HHHHhcCCCceEEEeeCCCC
Confidence 66799999999999999999999999999999999999 99999884 88888877544
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.79 E-value=2.5e-08 Score=63.56 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=72.0
Q ss_pred EEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCc
Q 031262 5 VMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPK 84 (162)
Q Consensus 5 Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~ 84 (162)
|+++++++..|..++.|+.+.+ ..+.+++.+|+. ..
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~-------------------------------------------~~ 36 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV-------------------------------------------AF 36 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH-------------------------------------------HH
Confidence 6899999999999999999976 556778888875 33
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccc-cCCcchhHHHhhhhCCceEEE
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCG-TSSSEEFVDQCIKKADCLTVG 137 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~G-s~~~~~~~~~v~~~~~~pVlv 137 (162)
.+.+.+.+++.++|+|++|+++.+.....+.| +++ ..+.+.++|||+.
T Consensus 37 ~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~-----~~~~~~~~~~vl~ 85 (86)
T cd01984 37 VRILKRLAAEEGADVIILGHNADDVAGRRLGASANV-----LVVIKGAGIPVLT 85 (86)
T ss_pred HHHHHHHHHHcCCCEEEEcCCchhhhhhccCchhhh-----hhcccccCCceeC
Confidence 56778888899999999999999888888888 787 8899999999974
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.50 E-value=0.0033 Score=55.73 Aligned_cols=140 Identities=13% Similarity=0.121 Sum_probs=86.6
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhcc--CCCCEEEEEEEeCCCCCCCC----CC------C----ccccchHHHHHHHHhH
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVT--NKGDLLTLLHVVPPPKPNTS----HH------D----SSACCPYLANSLGSLC 66 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~--~~~~~l~l~hv~~~~~~~~~----~~------~----~~~~~~~~~~~~~~~~ 66 (162)
-|||+|+-..++-...+..+..... +..-.++++|.++......+ +. + .....+++.+.++...
T Consensus 459 lriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~ 538 (832)
T PLN03159 459 LRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYE 538 (832)
T ss_pred eeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHH
Confidence 3799999987776666666544322 23357999999863321100 00 0 1122456666666665
Q ss_pred HHhCCCCeEEEEEEe---cCchhHHHHHHHhcCCCEEEEccCCCCcccccc-cccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 67 KACKPEVEVEALVIQ---GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCF-CGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 67 ~~~~~~v~~~~~v~~---g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~-~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
+.. .++.++..... .+-.+.|+..|++.++++|+++-|.+....... .+...-..+.++++++++|+|-+.-.+.
T Consensus 539 ~~~-~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg 617 (832)
T PLN03159 539 QHA-GCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRG 617 (832)
T ss_pred hhc-CceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCC
Confidence 542 35777744432 244999999999999999999999753332210 0010112333999999999998887765
Q ss_pred C
Q 031262 143 K 143 (162)
Q Consensus 143 ~ 143 (162)
.
T Consensus 618 ~ 618 (832)
T PLN03159 618 L 618 (832)
T ss_pred C
Confidence 4
No 19
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=97.22 E-value=0.005 Score=44.66 Aligned_cols=97 Identities=14% Similarity=0.094 Sum_probs=68.2
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe-c
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ-G 82 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~-g 82 (162)
+|+|++.|..+|.-++..+.+.+...+.++.++|+...... ...+..+.++++++.+ +++....-.. .
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~---------~~~~~~~~~~~~~~~~--gi~~~~~~~~~~ 69 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRP---------ESDEEAEFVQQFCKKL--NIPLEIKKVDVK 69 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCh---------hHHHHHHHHHHHHHHc--CCCEEEEEecch
Confidence 58999999999999999998877666677999998644321 1234456777888874 4544432221 1
Q ss_pred C--------ch--------hHHHHHHHhcCCCEEEEccCCCCccc
Q 031262 83 P--------KL--------GTVMSQVRKLEVSVLVLGQKKHSAFI 111 (162)
Q Consensus 83 ~--------~~--------~~I~~~a~~~~~dliVmG~~~~~~~~ 111 (162)
. .. ..+.+.+++++++.|+.|++......
T Consensus 70 ~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~e 114 (189)
T TIGR02432 70 ALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQAE 114 (189)
T ss_pred hhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHHH
Confidence 1 11 57788999999999999998765433
No 20
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=97.16 E-value=0.0071 Score=43.75 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=65.5
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe--
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ-- 81 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~-- 81 (162)
+|+|++.|..+|...+.....+....+.++.++||...... ...+-.+.++++|+. -+++..+.-..
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~---------~s~~~~~~v~~~~~~--~~i~~~~~~~~~~ 69 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLRE---------ESDEEAEFVEEICEQ--LGIPLYIVRIDED 69 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSC---------CHHHHHHHHHHHHHH--TT-EEEEEE--CH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCc---------ccchhHHHHHHHHHh--cCCceEEEEeeee
Confidence 69999999999999999999988888889999999865432 234556788889988 45666544433
Q ss_pred ---cCc---------hhHHHHHHHhcCCCEEEEccCCCCccc
Q 031262 82 ---GPK---------LGTVMSQVRKLEVSVLVLGQKKHSAFI 111 (162)
Q Consensus 82 ---g~~---------~~~I~~~a~~~~~dliVmG~~~~~~~~ 111 (162)
+.. .+.+.++|.+++++.|++|+|.....+
T Consensus 70 ~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~E 111 (182)
T PF01171_consen 70 RKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQAE 111 (182)
T ss_dssp CCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHHH
T ss_pred ecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccHH
Confidence 111 256778899999999999999755444
No 21
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=96.84 E-value=0.02 Score=41.25 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=68.3
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEE--E-E
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEAL--V-I 80 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v-~ 80 (162)
+|+|++.|..+|.-++.++.+.....+.++.++|+...... ...+..+.+++++..+ +++..+. . .
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~---------~~~~~~~~~~~~~~~~--~i~~~~~~~~~~ 69 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRP---------ESDEEAAFVADLCAKL--GIPLYILVVALA 69 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCc---------hHHHHHHHHHHHHHHc--CCcEEEEeeccc
Confidence 58999999999999999998876655678999998644321 1245667777888874 5555543 1 1
Q ss_pred ecCc-----------hhHHHHHHHhcCCCEEEEccCCCCccc
Q 031262 81 QGPK-----------LGTVMSQVRKLEVSVLVLGQKKHSAFI 111 (162)
Q Consensus 81 ~g~~-----------~~~I~~~a~~~~~dliVmG~~~~~~~~ 111 (162)
.+.. ...+.++|++++++.|+.|++......
T Consensus 70 ~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~e 111 (185)
T cd01992 70 PKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQAE 111 (185)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHH
Confidence 1111 156778899999999999998755433
No 22
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.72 E-value=0.042 Score=48.91 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=35.6
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCC
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPP 41 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~ 41 (162)
.+|.+.+=+.++.++||.+|.+++..++-.++++|..+.
T Consensus 631 ~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~ 669 (832)
T PLN03159 631 HHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPG 669 (832)
T ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEcc
Confidence 489999989999999999999999999999999999854
No 23
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.33 E-value=0.075 Score=41.22 Aligned_cols=98 Identities=12% Similarity=0.054 Sum_probs=67.5
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCC-CeEEEEEEe
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPE-VEVEALVIQ 81 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~v~~ 81 (162)
.+|+|++.|-++|..++.....+... -++.++||......+ .....+..+.+|...... +........
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 90 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRGY---------SDQEAELVEKLCEKLGIPLIVERVTDDL 90 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCCc---------cchHHHHHHHHHHHhCCceEEEEEEeec
Confidence 68999999999999999888887654 789999998665432 245556677777764321 111111111
Q ss_pred c-------Cc--------hhHHHHHHHhcCCCEEEEccCCCCccc
Q 031262 82 G-------PK--------LGTVMSQVRKLEVSVLVLGQKKHSAFI 111 (162)
Q Consensus 82 g-------~~--------~~~I~~~a~~~~~dliVmG~~~~~~~~ 111 (162)
+ ++ ...+.+.|++.++|.|+.|+|......
T Consensus 91 ~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~e 135 (298)
T COG0037 91 GRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAE 135 (298)
T ss_pred cccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHHH
Confidence 1 11 355778899999999999999876554
No 24
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=95.60 E-value=0.34 Score=34.60 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=63.5
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCC--CCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNK--GDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~--~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
+|+|++.+-.+|.-++.++.+..... +-++.++|+...... ...+..+.+++++..+ +++....-..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~~~~~~~~~~~~--~i~~~~~~~~ 69 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPG---------YRDESLEVVERLAEEL--GIELEIVSFK 69 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCC---------CcHHHHHHHHHHHHHc--CCceEEEehh
Confidence 58999999999999888888766544 568889998754321 1134445667777763 4443322211
Q ss_pred -------------c-C--------chhHHHHHHHhcCCCEEEEccCCCCcc
Q 031262 82 -------------G-P--------KLGTVMSQVRKLEVSVLVLGQKKHSAF 110 (162)
Q Consensus 82 -------------g-~--------~~~~I~~~a~~~~~dliVmG~~~~~~~ 110 (162)
+ . ....+.+.+++++++.|+.|++.....
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~ 120 (185)
T cd01993 70 EEYTDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEA 120 (185)
T ss_pred hhcchhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHH
Confidence 0 0 135667789999999999999865433
No 25
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=95.19 E-value=0.28 Score=37.57 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=62.4
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCC--CCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEE
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNK--GDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALV 79 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~--~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v 79 (162)
..+|+|++.|..+|...+.++..+.... +-++..+|+......+ . + +.++++|+++ +++..+.-
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~--------~-~---~~~~~~~~~l--gI~~~v~~ 94 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGF--------P-E---HVLPEYLESL--GVPYHIEE 94 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCC--------C-H---HHHHHHHHHh--CCCEEEEE
Confidence 4689999999999998888887765433 3478888875432211 1 1 1356777774 44444321
Q ss_pred Ee-----------cC---------chhHHHHHHHhcCCCEEEEccCCCCccc
Q 031262 80 IQ-----------GP---------KLGTVMSQVRKLEVSVLVLGQKKHSAFI 111 (162)
Q Consensus 80 ~~-----------g~---------~~~~I~~~a~~~~~dliVmG~~~~~~~~ 111 (162)
.+ +. -...+.++|++.++|.|++|++.....+
T Consensus 95 ~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~E 146 (258)
T PRK10696 95 QDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDILE 146 (258)
T ss_pred ecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHHH
Confidence 11 11 0256678899999999999999765443
No 26
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=93.77 E-value=1.2 Score=31.43 Aligned_cols=88 Identities=11% Similarity=0.098 Sum_probs=55.8
Q ss_pred EEEEEeCC-----ChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEE
Q 031262 4 RVMVVVDQ-----TSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEAL 78 (162)
Q Consensus 4 ~Ilv~vD~-----S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 78 (162)
+|||-.+. ++.+.+++..|.+++...|.+++++.+=+. ++..+.+++.... .+.+--..
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~--------------~~~~~~l~~~l~~--~G~d~v~~ 64 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPA--------------EEAAEALRKALAK--YGADKVYH 64 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETC--------------CCHHHHHHHHHHS--TTESEEEE
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecc--------------hhhHHHHhhhhhh--cCCcEEEE
Confidence 35555553 478899999999999988999998876521 1233344444443 34332233
Q ss_pred EEec-----Cc---hhHHHHHHHhcCCCEEEEccCCC
Q 031262 79 VIQG-----PK---LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 79 v~~g-----~~---~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
+... ++ .+.|.+.+++.++|+|++|+...
T Consensus 65 ~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~ 101 (164)
T PF01012_consen 65 IDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSF 101 (164)
T ss_dssp EE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHH
T ss_pred ecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 3211 12 57888999999999999998753
No 27
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=93.39 E-value=1.8 Score=33.22 Aligned_cols=101 Identities=10% Similarity=0.028 Sum_probs=60.9
Q ss_pred CChhhHHHHHHHHHhccCCC-CEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE----e-cCc
Q 031262 11 QTSHSKHAMMWALTHVTNKG-DLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI----Q-GPK 84 (162)
Q Consensus 11 ~S~~s~~al~~A~~~a~~~~-~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~----~-g~~ 84 (162)
.++...+|++.|+++..+.+ .+++++++=++... . .+.+++.... |.+=-+++. . .|+
T Consensus 34 iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~----------~---~~~lr~aLAm---GaD~avli~d~~~~g~D~ 97 (256)
T PRK03359 34 ISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT----------N---AKGRKDVLSR---GPDELIVVIDDQFEQALP 97 (256)
T ss_pred cChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh----------h---HHHHHHHHHc---CCCEEEEEecCcccCcCH
Confidence 46678999999999987654 79999998654311 1 1223332222 222222221 1 243
Q ss_pred ---hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEE
Q 031262 85 ---LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTV 136 (162)
Q Consensus 85 ---~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVl 136 (162)
+..|..++++.++|||+.|......- .|.+. -.+......|.+
T Consensus 98 ~~tA~~La~ai~~~~~DLVl~G~~s~D~~----tgqvg-----~~lAe~Lg~P~v 143 (256)
T PRK03359 98 QQTASALAAAAQKAGFDLILCGDGSSDLY----AQQVG-----LLVGEILNIPAI 143 (256)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCccccCC----CCcHH-----HHHHHHhCCCce
Confidence 77888889998999999998754321 22333 455666666643
No 28
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=93.15 E-value=1.1 Score=37.13 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=60.0
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhc-cCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHV-TNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a-~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
.+|+|++.|..+|.-.+.....+. ...+.+++++||...... ...+..+..+++|++ -+++..+.-..
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~---------~s~~~~~~~~~~~~~--l~i~~~~~~~~ 84 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSP---------NADSWVKHCEQVCQQ--WQVPLVVERVQ 84 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCc---------chHHHHHHHHHHHHH--cCCcEEEEEEe
Confidence 689999999999988877776654 234678999999754432 235556778889988 45555533222
Q ss_pred ----cCchhHHH---------HHHHhcCCCEEEEccCCCCccc
Q 031262 82 ----GPKLGTVM---------SQVRKLEVSVLVLGQKKHSAFI 111 (162)
Q Consensus 82 ----g~~~~~I~---------~~a~~~~~dliVmG~~~~~~~~ 111 (162)
+...+... +.+++ .+.|++|+|.....+
T Consensus 85 ~~~~~~~~e~~AR~~Ry~~~~~~~~~--~~~l~~aHh~DDq~E 125 (436)
T PRK10660 85 LDQRGLGIEAAARQARYQAFARTLLP--GEVLVTAQHLDDQCE 125 (436)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHh--CCEEEEcCchHHHHH
Confidence 11122222 22222 378888888654433
No 29
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=93.09 E-value=0.95 Score=32.91 Aligned_cols=114 Identities=11% Similarity=0.113 Sum_probs=63.3
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHH--HHHHhHHHhCCCCeEEEEE
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLAN--SLGSLCKACKPEVEVEALV 79 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~v 79 (162)
|+||++++-+|-.+..+.++.-.+. +.+.++.++-. +. .+++.. .++.+ .+..+....
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~-~~g~~V~vv~T--~~------------A~~fi~~~~l~~l-----~~~~v~~~~ 60 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLT-KRGYQVTVLMT--KA------------ATKFITPLTLQVL-----SKNPVHLDV 60 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHH-HCCCEEEEEEC--hh------------HHHHcCHHHHHHH-----hCCceEecc
Confidence 6899999999999999888888775 45677665431 11 111111 11111 122222221
Q ss_pred EecC---chhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhC--CceEEEEec
Q 031262 80 IQGP---KLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKA--DCLTVGVRK 140 (162)
Q Consensus 80 ~~g~---~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~--~~pVlvv~~ 140 (162)
.... ....| +.+ ..+|++|+---..+.+.++-.|-..+ .+..++... ++|+++++.
T Consensus 61 ~~~~~~~~~~hi-~l~--~~aD~~vIaPaTantlakiA~GiaDn--llt~~~~a~~~~~pvvi~Pa 121 (182)
T PRK07313 61 MDEHDPKLMNHI-ELA--KRADLFLVAPATANTIAKLAHGIADD--LVTSVALALPATTPKLIAPA 121 (182)
T ss_pred ccccccCCcccc-ccc--cccCEEEEeeCCHhHHHHHHccccCc--HHHHHHHHcCCCCCEEEEEC
Confidence 1111 11111 222 46799888877777777766665542 112333334 899999986
No 30
>PRK12342 hypothetical protein; Provisional
Probab=92.85 E-value=3.5 Score=31.69 Aligned_cols=100 Identities=11% Similarity=0.047 Sum_probs=60.4
Q ss_pred CChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE----e-cCc-
Q 031262 11 QTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI----Q-GPK- 84 (162)
Q Consensus 11 ~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~----~-g~~- 84 (162)
.++...+|++.|+++. +.+.+++++++=++... ...+ +++... -|.+--+++. . .|+
T Consensus 33 iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a~----------~~~l---~r~ala---mGaD~avli~d~~~~g~D~~ 95 (254)
T PRK12342 33 ISQFDLNAIEAASQLA-TDGDEIAALTVGGSLLQ----------NSKV---RKDVLS---RGPHSLYLVQDAQLEHALPL 95 (254)
T ss_pred CChhhHHHHHHHHHHh-hcCCEEEEEEeCCChHh----------HHHH---HHHHHH---cCCCEEEEEecCccCCCCHH
Confidence 4667899999999997 67899999998544210 1111 122222 1322222222 2 244
Q ss_pred --hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEE
Q 031262 85 --LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTV 136 (162)
Q Consensus 85 --~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVl 136 (162)
+..|..++++.++|||+.|...-..- .|.+. -.+......|.+
T Consensus 96 ata~~La~~i~~~~~DLVl~G~~s~D~~----tgqvg-----~~lA~~Lg~P~v 140 (254)
T PRK12342 96 DTAKALAAAIEKIGFDLLLFGEGSGDLY----AQQVG-----LLLGELLQLPVI 140 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCC----CCCHH-----HHHHHHhCCCcE
Confidence 68888999988999999998654321 23333 455666666644
No 31
>PRK13820 argininosuccinate synthase; Provisional
Probab=92.78 E-value=3.1 Score=34.02 Aligned_cols=90 Identities=10% Similarity=-0.000 Sum_probs=58.5
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCC-EEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEE-
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGD-LLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEAL- 78 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~-~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 78 (162)
|+++|++++.+-.+|.-++.|+.+. .+. +++.+|+...... +-.+.+++.|... ++++.+.
T Consensus 1 ~~~kVvvA~SGGvDSsvll~lL~e~---~g~~~Viav~vd~g~~~------------~e~~~a~~~a~~l--Gi~~~vvd 63 (394)
T PRK13820 1 MMKKVVLAYSGGLDTSVCVPLLKEK---YGYDEVITVTVDVGQPE------------EEIKEAEEKAKKL--GDKHYTID 63 (394)
T ss_pred CCCeEEEEEeCcHHHHHHHHHHHHh---cCCCEEEEEEEECCCCh------------HHHHHHHHHHHHc--CCCEEEEe
Confidence 7899999999999999999997543 353 8999998643211 1122344444442 2222210
Q ss_pred EE------------------e--------cCc--hhHHHHHHHhcCCCEEEEccCCC
Q 031262 79 VI------------------Q--------GPK--LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 79 v~------------------~--------g~~--~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
+. . ..+ ...+.+.|++.++|.|.-|++++
T Consensus 64 ~~eef~~~~i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 64 AKEEFAKDYIFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred CHHHHHHHHHHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 00 1 122 56789999999999999999665
No 32
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=92.72 E-value=2.1 Score=33.73 Aligned_cols=92 Identities=14% Similarity=0.058 Sum_probs=64.7
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE--
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI-- 80 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~-- 80 (162)
.++++++.+.++|.-.+..|.+.....+.++.++|+..... + .+..+..+++++.+ ++++.+...
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~-F----------pEt~ef~d~~a~~~--gl~l~v~~~~~ 94 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWK-F----------PEMIEFRDRRAKEL--GLELIVHSNPE 94 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCC-C----------HHHHHHHHHHHHHh--CCCEEEEeChH
Confidence 57899999999999999888776544355788899865442 2 46667777787774 455544321
Q ss_pred ---ecC-c-------------hhHHHHHHHhcCCCEEEEccCCC
Q 031262 81 ---QGP-K-------------LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 81 ---~g~-~-------------~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.|. + .+.+.++++++++|.++.|.+..
T Consensus 95 ~i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrD 138 (301)
T PRK05253 95 GIARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRD 138 (301)
T ss_pred HHhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccc
Confidence 111 0 25677889999999999999864
No 33
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.19 E-value=0.67 Score=38.41 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=60.6
Q ss_pred CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHH
Q 031262 10 DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVM 89 (162)
Q Consensus 10 D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~ 89 (162)
|..-....||..|++.+...+.+|..+.+.++..... ......=+.+.++++.+++. .......+..|++.+.|.
T Consensus 32 DLRl~DN~aL~~A~~~a~~~~~~vl~vyi~dp~~~~~----~~~r~~Fl~esL~~L~~~L~-~~g~~L~v~~g~~~~~l~ 106 (454)
T TIGR00591 32 DQRVQDNWALIAAQTLALKKKLPLHVCFCLVDFFLAA----TRRHYFFMLGGLDEVANECE-RLIIPFHLLDGPPKELLP 106 (454)
T ss_pred chhccCCHHHHHHHHHHHHcCCCEEEEEEeCCCcccc----cHHHHHHHHHHHHHHHHHHH-HcCCceEEeecChHHHHH
Confidence 5555556788888876655567899999987643221 12233334455555555432 122455667899999999
Q ss_pred HHHHhcCCCEEEEccC
Q 031262 90 SQVRKLEVSVLVLGQK 105 (162)
Q Consensus 90 ~~a~~~~~dliVmG~~ 105 (162)
+.+++.+++.|+.-..
T Consensus 107 ~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 107 YFVDLHAAAAVVTDFS 122 (454)
T ss_pred HHHHHcCCCEEEEecc
Confidence 9999999999998774
No 34
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=91.38 E-value=4.2 Score=30.93 Aligned_cols=89 Identities=19% Similarity=0.177 Sum_probs=57.0
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
.++++|++.|--+|.-++.++.+. +.++..+|+..+.. ..+-.+.++++++.+ +++..+.-..
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~~~~-----------~~~e~~~a~~~a~~l--gi~~~ii~~~ 74 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVSPSI-----------SPRELEDAIIIAKEI--GVNHEFVKID 74 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecCCCC-----------CHHHHHHHHHHHHHc--CCCEEEEEcH
Confidence 467999999999998888887764 56788888854321 122334456666663 4443322111
Q ss_pred c-------C-----------chhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 G-------P-----------KLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 g-------~-----------~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
. + ....+.+.|++++++.|+-|++..
T Consensus 75 ~~~~~~~~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~d 118 (252)
T TIGR00268 75 KMINPFRANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNAD 118 (252)
T ss_pred HHHHHHHhCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 0 1 133566789999999999998653
No 35
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=90.87 E-value=3.1 Score=34.12 Aligned_cols=117 Identities=8% Similarity=0.083 Sum_probs=67.3
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
+++|++++-+|-.+..+.++.-.+. +.+.++.++-. . ...++... ..-+...+..+......
T Consensus 6 ~k~IllgvTGsiaa~k~~~lv~~L~-~~g~~V~vv~T---~-----------~A~~fi~~---~~l~~l~~~~V~~~~~~ 67 (399)
T PRK05579 6 GKRIVLGVSGGIAAYKALELVRRLR-KAGADVRVVMT---E-----------AAKKFVTP---LTFQALSGNPVSTDLWD 67 (399)
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHHH-hCCCEEEEEEC---H-----------hHHHHHhH---HHHHHhhCCceEccccc
Confidence 5789999999998898888887764 46777665441 1 11222211 11111111122222111
Q ss_pred cC---chhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 82 GP---KLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 82 g~---~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
.. ..+. ++.++ .+|++|+.--..+.+.++-.|-.. +.+..++..+++||++++.-
T Consensus 68 ~~~~~~~~h-i~l~~--~aD~~vVaPaTaNtlaKiA~GiaD--nllt~~~la~~~pvvi~Pam 125 (399)
T PRK05579 68 PAAEAAMGH-IELAK--WADLVLIAPATADLIAKLAHGIAD--DLLTTTLLATTAPVLVAPAM 125 (399)
T ss_pred cccCCCcch-hhccc--ccCEEEEeeCCHHHHHHHHcccCC--cHHHHHHHhcCCCEEEEeCC
Confidence 11 1112 23333 579999988777777776666554 33355666679999999843
No 36
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=90.63 E-value=0.46 Score=33.59 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=64.3
Q ss_pred CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHH
Q 031262 10 DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVM 89 (162)
Q Consensus 10 D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~ 89 (162)
|..-....||..|++ .+.++..+.++++..... .........=+.+.+.++..++. ...+...+..|++.+.+.
T Consensus 8 DLRl~DN~aL~~A~~----~~~~v~~vfv~d~~~~~~-~~~~~~r~~Fl~~sL~~L~~~L~-~~g~~L~v~~g~~~~~l~ 81 (165)
T PF00875_consen 8 DLRLHDNPALHAAAQ----NGDPVLPVFVFDPEEFHP-YRIGPRRRRFLLESLADLQESLR-KLGIPLLVLRGDPEEVLP 81 (165)
T ss_dssp --SSTT-HHHHHHHH----TTSEEEEEEEE-HHGGTT-CSSCHHHHHHHHHHHHHHHHHHH-HTTS-EEEEESSHHHHHH
T ss_pred CCchhhhHHHHHHHH----cCCCeEEEEEeccccccc-ccCcchHHHHHHHHHHHHHHHHH-hcCcceEEEecchHHHHH
Confidence 333344567776643 467899999997762110 01112233344455555555431 223667778899999999
Q ss_pred HHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 90 SQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 90 ~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
+.+++.+++.|..-... +...+...-.. ...+...++++..+..
T Consensus 82 ~l~~~~~~~~V~~~~~~-~~~~~~rd~~v------~~~l~~~~i~~~~~~~ 125 (165)
T PF00875_consen 82 ELAKEYGATAVYFNEEY-TPYERRRDERV------RKALKKHGIKVHTFDD 125 (165)
T ss_dssp HHHHHHTESEEEEE----SHHHHHHHHHH------HHHHHHTTSEEEEE--
T ss_pred HHHHhcCcCeeEecccc-CHHHHHHHHHH------HHHHHhcceEEEEECC
Confidence 99999999999987653 32222211111 3445556788877654
No 37
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=90.56 E-value=2.7 Score=35.24 Aligned_cols=119 Identities=10% Similarity=0.114 Sum_probs=69.7
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
+++|++++-+|-.+..+.+++-.+. +.|.++.++-.- ...++. ....-+.-.+..+......
T Consensus 70 ~k~IllgVtGsIAayka~~lvr~L~-k~G~~V~VvmT~--------------sA~~fv---~p~~~~~ls~~~V~~d~~~ 131 (475)
T PRK13982 70 SKRVTLIIGGGIAAYKALDLIRRLK-ERGAHVRCVLTK--------------AAQQFV---TPLTASALSGQRVYTDLFD 131 (475)
T ss_pred CCEEEEEEccHHHHHHHHHHHHHHH-hCcCEEEEEECc--------------CHHHHh---hHHHHHHhcCCceEecCCC
Confidence 5899999999999999999998875 457776655421 111222 1111111122223222211
Q ss_pred cCc---hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 82 GPK---LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 82 g~~---~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
... ... ++.++ .+|++|+.--..+.+-++-.|-.. +.+..++...++||++++.-+.
T Consensus 132 ~~~~~~~~H-i~la~--~aD~~vVAPATANTIAKiA~GiAD--nLlt~v~La~~~PvliaPaMN~ 191 (475)
T PRK13982 132 PESEFDAGH-IRLAR--DCDLIVVAPATADLMAKMANGLAD--DLASAILLAANRPILLAPAMNP 191 (475)
T ss_pred cccccCccc-hhhhh--hcCEEEEeeCCHHHHHHHHccccC--cHHHHHHHhcCCCEEEEEcCCH
Confidence 111 112 23444 479999988777777766666544 3334556668999999987544
No 38
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=90.41 E-value=6.8 Score=30.21 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=66.5
Q ss_pred CCChhhHHHHHHHHHhcc-CCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE----ec-C
Q 031262 10 DQTSHSKHAMMWALTHVT-NKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI----QG-P 83 (162)
Q Consensus 10 D~S~~s~~al~~A~~~a~-~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~----~g-~ 83 (162)
..++...+|++.|+++.. ..+.+++++++=++. ..+.+++ |-. -|.+--+++. .+ +
T Consensus 34 ~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~---------------a~~~lr~-aLA--mGaDraili~d~~~~~~d 95 (260)
T COG2086 34 SINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ---------------AEEALRE-ALA--MGADRAILITDRAFAGAD 95 (260)
T ss_pred ccChhhHHHHHHHHHhhccCCCceEEEEEecchh---------------hHHHHHH-HHh--cCCCeEEEEecccccCcc
Confidence 346678999999999988 588999999985443 1222333 222 2433333332 12 3
Q ss_pred c---hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 84 K---LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 84 ~---~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
+ +..|...+++.+.|||++|...-.. -.|.+. ..+......|.+..=..
T Consensus 96 ~~~ta~~Laa~~~~~~~~LVl~G~qa~D~----~t~qvg-----~~lAe~Lg~P~~t~v~~ 147 (260)
T COG2086 96 PLATAKALAAAVKKIGPDLVLTGKQAIDG----DTGQVG-----PLLAELLGWPQVTYVSK 147 (260)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecccccC----CccchH-----HHHHHHhCCceeeeEEE
Confidence 3 7888899999999999999865321 123344 56666677776654443
No 39
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=89.72 E-value=5.1 Score=27.68 Aligned_cols=95 Identities=9% Similarity=0.121 Sum_probs=58.7
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecC
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGP 83 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~ 83 (162)
+|+|++.+.++|.-.+..+.+..... .++.++|+..... ..+..+.+++.++.+ ++++...-....
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg~~-----------~~~~~~~~~~~~~~~--g~~~~~~~~~~~ 66 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTGYE-----------FPETYEFVDRVAERY--GLPLVVVRPPDS 66 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCCCC-----------CHHHHHHHHHHHHHh--CCCeEEECCCcc
Confidence 58899999999988888887755332 4677888754332 134555666666664 333322211100
Q ss_pred --------------c------------hhHHHHHHHhcCCCEEEEccCCCCcccc
Q 031262 84 --------------K------------LGTVMSQVRKLEVSVLVLGQKKHSAFIN 112 (162)
Q Consensus 84 --------------~------------~~~I~~~a~~~~~dliVmG~~~~~~~~~ 112 (162)
+ .+.+.+++++.+.+.+++|.+......+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~r 121 (173)
T cd01713 67 PAEGLALGLKGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESARR 121 (173)
T ss_pred HHHHHHHhhhccCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchhh
Confidence 0 2456667777788999999987554443
No 40
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=89.25 E-value=5 Score=28.49 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=44.7
Q ss_pred HHHHHHhHHHhCCCCeEEEEEEec-Cc---hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCce
Q 031262 59 ANSLGSLCKACKPEVEVEALVIQG-PK---LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCL 134 (162)
Q Consensus 59 ~~~~~~~~~~~~~~v~~~~~v~~g-~~---~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~p 134 (162)
.+...+.++. -+++++..+..- .. ...+.+.+++.+++.+|.++-+...+. .-+..+++.|
T Consensus 14 ~~~a~~~L~~--~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lp-------------gvva~~t~~P 78 (156)
T TIGR01162 14 MKKAADILEE--FGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLP-------------GMVAALTPLP 78 (156)
T ss_pred HHHHHHHHHH--cCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhH-------------HHHHhccCCC
Confidence 3444444555 467777777542 22 344555556678899988887655544 3356777899
Q ss_pred EEEEecCCC
Q 031262 135 TVGVRKQSK 143 (162)
Q Consensus 135 Vlvv~~~~~ 143 (162)
|+-+|....
T Consensus 79 VIgvP~~~~ 87 (156)
T TIGR01162 79 VIGVPVPSK 87 (156)
T ss_pred EEEecCCcc
Confidence 999988654
No 41
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=88.84 E-value=8.5 Score=30.24 Aligned_cols=92 Identities=12% Similarity=0.031 Sum_probs=63.2
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe-
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ- 81 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~- 81 (162)
.+.++++.+.++|.-.+..+.+.....+.++.++|+-.... + .+..++.+++++.+ ++++.+...+
T Consensus 20 ~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~-F----------~Et~efrd~~a~~~--gl~l~v~~~~~ 86 (294)
T TIGR02039 20 ERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWK-F----------REMIAFRDHMVAKY--GLRLIVHSNEE 86 (294)
T ss_pred CCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCC-C----------HHHHHHHHHHHHHh--CCCEEEEechh
Confidence 34677899999999999888876644356789999865442 2 55777777887774 4444432211
Q ss_pred ----cC-c-------------hhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 ----GP-K-------------LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 ----g~-~-------------~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
|- + .+.+.++++++++|.++.|.+..
T Consensus 87 ~~~~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRD 130 (294)
T TIGR02039 87 GIADGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRD 130 (294)
T ss_pred hhhcCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChh
Confidence 11 0 24577888899999999998753
No 42
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=88.79 E-value=6.5 Score=27.69 Aligned_cols=85 Identities=12% Similarity=0.204 Sum_probs=55.2
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecC
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGP 83 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~ 83 (162)
+|++++.+-.+|.-++.++.+. +.++..+|+...... ..+. +.++.+++.+.+. . ...+.
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~~~~~----------~~~~-~~~~~~~~~~g~~--~---~~~~~ 60 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDYGQRH----------AKEE-EAAKLIAEKLGPS--T---YVPAR 60 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEECCCCC----------hhHH-HHHHHHHHHHCCC--E---EEeCc
Confidence 5889999999999888777652 456888888643211 1122 5566666664322 1 11222
Q ss_pred c---hhHHHHHHHhcCCCEEEEccCCCC
Q 031262 84 K---LGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 84 ~---~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
. ...+.++|++++++.|+.|.+...
T Consensus 61 ~~~~~~~l~~~a~~~g~~~i~~G~~~~d 88 (169)
T cd01995 61 NLIFLSIAAAYAEALGAEAIIIGVNAED 88 (169)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCc
Confidence 2 345677889999999999998744
No 43
>PLN00200 argininosuccinate synthase; Provisional
Probab=88.31 E-value=13 Score=30.59 Aligned_cols=92 Identities=9% Similarity=0.082 Sum_probs=58.0
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhC----------
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACK---------- 70 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 70 (162)
|+++|++++.+--+|.-++.|+.+. .+.+++.+|+..... .+-.+.+++.|....
T Consensus 4 ~~~kVvva~SGGlDSsvla~~L~e~---~G~eViav~id~Gq~------------~~el~~a~~~A~~lGi~~~~v~dl~ 68 (404)
T PLN00200 4 KLNKVVLAYSGGLDTSVILKWLREN---YGCEVVCFTADVGQG------------IEELEGLEAKAKASGAKQLVVKDLR 68 (404)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHHh---hCCeEEEEEEECCCC------------hHHHHHHHHHHHHcCCCEEEEEeCH
Confidence 6779999999999999999998762 367899999864432 011122223332211
Q ss_pred -------------CCCeEE-EEEE---ecCc--hhHHHHHHHhcCCCEEEEccCCC
Q 031262 71 -------------PEVEVE-ALVI---QGPK--LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 71 -------------~~v~~~-~~v~---~g~~--~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.+..++ .-.. -..| ...+++.|++.+++.|.=|++++
T Consensus 69 ~ef~~~~i~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgk 124 (404)
T PLN00200 69 EEFVRDYIFPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGK 124 (404)
T ss_pred HHHHHhhcCHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCC
Confidence 111111 0000 1122 77889999999999999899874
No 44
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=88.28 E-value=4.4 Score=29.30 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=59.9
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHH--HHHHhHHHhCCCCeEEEEEE
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLAN--SLGSLCKACKPEVEVEALVI 80 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~v~ 80 (162)
|||++++-+|-.+..+.++.-.+. +.+.+++++-.-. ..++.. .++.+. +..+.+...
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~-~~g~~V~vi~T~~--------------A~~fi~~~~l~~l~-----~~~v~~~~~ 60 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLT-KLGYDVTVLMTQA--------------ATQFITPLTLQVLS-----KNPVHLDVM 60 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHH-HCCCEEEEEEChH--------------HHhhccHhhHHHHh-----CCCeEeecc
Confidence 689999999998888887766654 4567765443211 111111 122221 222222221
Q ss_pred e-cCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhh--CCceEEEEec
Q 031262 81 Q-GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKK--ADCLTVGVRK 140 (162)
Q Consensus 81 ~-g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~--~~~pVlvv~~ 140 (162)
. .++ ..+....-...+|++|+.--..+.+.++-.|-..+ .+..++.- .++||++++.
T Consensus 61 ~~~~~-~~~~hi~l~~~aD~~vVaPaSanTlakiA~GiaDn--Llt~~a~a~~~~~pv~i~Pa 120 (177)
T TIGR02113 61 DEHDP-KVINHIELAKKADLFLVAPASANTIAHLAHGFADN--IVTSVALALPPETPKLIAPA 120 (177)
T ss_pred ccccC-CCcccceechhhCEEEEEeCCHHHHHHHHcCcCCc--HHHHHHHHcCCCCCEEEEeC
Confidence 1 111 11111111236789988877766666666664442 11222332 3799999984
No 45
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=87.81 E-value=2.6 Score=33.15 Aligned_cols=81 Identities=16% Similarity=0.249 Sum_probs=46.9
Q ss_pred cchHHHHHHHHhHHHhCCCCeEE--EEEEecCc-hhHHHHHHHhc-------CCCEEEEccCCCCcccccccccCCcchh
Q 031262 54 CCPYLANSLGSLCKACKPEVEVE--ALVIQGPK-LGTVMSQVRKL-------EVSVLVLGQKKHSAFINCFCGTSSSEEF 123 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~--~~v~~g~~-~~~I~~~a~~~-------~~dliVmG~~~~~~~~~~~~Gs~~~~~~ 123 (162)
....+.+.++.+..+ .+.+++. ...+.|+. ...|++..+.. .+|+||++.-| |.+.+++ .+-.+.+
T Consensus 24 ~gAa~~D~~~~~~~r-~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG-Gs~eDL~--~FN~e~v 99 (319)
T PF02601_consen 24 TGAAIQDFLRTLKRR-NPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGG-GSIEDLW--AFNDEEV 99 (319)
T ss_pred chHHHHHHHHHHHHh-CCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCC-CChHHhc--ccChHHH
Confidence 445555555555555 3444444 33335654 55565554432 48999999876 5566643 4554555
Q ss_pred HHHhhhhCCceEEEEe
Q 031262 124 VDQCIKKADCLTVGVR 139 (162)
Q Consensus 124 ~~~v~~~~~~pVlvv~ 139 (162)
++.| -.+++||+.-=
T Consensus 100 arai-~~~~~PvisaI 114 (319)
T PF02601_consen 100 ARAI-AASPIPVISAI 114 (319)
T ss_pred HHHH-HhCCCCEEEec
Confidence 4544 44889988643
No 46
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=87.70 E-value=7.6 Score=31.74 Aligned_cols=118 Identities=8% Similarity=0.041 Sum_probs=65.0
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
+++|++++-+|-.+..++++.-.+. +.+.++.++- .. ...++. ....-+...+.++......
T Consensus 3 ~k~IllgiTGSiaa~~~~~ll~~L~-~~g~~V~vv~---T~-----------~A~~fv---~~~~l~~~~~~~v~~~~~~ 64 (390)
T TIGR00521 3 NKKILLGVTGGIAAYKTVELVRELV-RQGAEVKVIM---TE-----------AAKKFI---TPLTLEALSGHKVVTELWG 64 (390)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHH-hCCCEEEEEE---CH-----------hHHHHH---HHHHHHHhhCCceeehhcc
Confidence 6899999999999999998887774 4577766543 11 112222 2111110011112221111
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
....... ...-...+|++|+---..+.+.++-.|-.. +.+..++..+.+|+++++.
T Consensus 65 ~~~~~~~-hi~l~~~aD~~vVaPaTanTlaKiA~GiaD--nLlt~~~~~~~~plviaPa 120 (390)
T TIGR00521 65 PIEHNAL-HIDLAKWADLILIAPATANTISKIAHGIAD--DLVSTTALAASAPIILAPA 120 (390)
T ss_pred ccccccc-hhhcccccCEEEEecCCHHHHHHHHcccCC--cHHHHHHHHhCCCEEEEeC
Confidence 1111111 112223679998887777767766666544 2234455556699999987
No 47
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=87.40 E-value=9.1 Score=27.79 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=56.4
Q ss_pred EEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe---
Q 031262 5 VMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ--- 81 (162)
Q Consensus 5 Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~--- 81 (162)
|+|++.|..+|.-++.++.+.. +.++..+|+..... ..+-.+.++++|+++ +++..+.-..
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---~~~v~~v~vd~g~~-----------~~~~~~~~~~~a~~l--gi~~~~~~~~~~~ 64 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---GDRVLAVTATSPLF-----------PRRELEEAKRLAKEI--GIRHEVIETDELD 64 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---CCcEEEEEeCCCCC-----------CHHHHHHHHHHHHHc--CCcEEEEeCCccc
Confidence 5789999999988888776653 23688888864421 133455666777763 3333322111
Q ss_pred -----c---------C--chhHHHHHHHhcCCCEEEEccCCCC
Q 031262 82 -----G---------P--KLGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 82 -----g---------~--~~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
+ + ....+.+++++++++.|+.|++...
T Consensus 65 ~~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD 107 (202)
T cd01990 65 DPEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADD 107 (202)
T ss_pred cHHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 0 0 1345667899999999999987543
No 48
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=86.66 E-value=8.4 Score=27.29 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=43.1
Q ss_pred CCCeEEEEEEecC-chh---HHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCCCC
Q 031262 71 PEVEVEALVIQGP-KLG---TVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSKGM 145 (162)
Q Consensus 71 ~~v~~~~~v~~g~-~~~---~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~~~ 145 (162)
-++.++..+..-. .-+ ...+.+++.+++.||-|+-|...+.. -+...++.||+-||-.++.-
T Consensus 28 fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPG-------------mvAa~T~lPViGVPv~s~~L 93 (162)
T COG0041 28 FGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPG-------------MVAAKTPLPVIGVPVQSKAL 93 (162)
T ss_pred cCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcch-------------hhhhcCCCCeEeccCccccc
Confidence 4788887776533 334 44455567888899999988665553 34577899999999875543
No 49
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=86.34 E-value=5.1 Score=32.94 Aligned_cols=92 Identities=22% Similarity=0.227 Sum_probs=57.5
Q ss_pred CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCC-----CCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCc
Q 031262 10 DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNT-----SHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPK 84 (162)
Q Consensus 10 D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~ 84 (162)
|..-....||..|++.+ .++..+.++++..... ..........=+.+.++++.+++. ...+...+..|++
T Consensus 10 DLRl~DN~aL~~A~~~~----~~vl~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L~-~~g~~L~v~~G~~ 84 (429)
T TIGR02765 10 DLRVHDNPALYKASSSS----DTLIPLYCFDPRQFKLTHFFGFPKTGPARGKFLLESLKDLRTSLR-KLGSDLLVRSGKP 84 (429)
T ss_pred CCccccHHHHHHHHhcC----CeEEEEEEECchHhccccccccCCCCHHHHHHHHHHHHHHHHHHH-HcCCCeEEEeCCH
Confidence 45545567888887543 4688888887643221 011122233334455566555542 2234556678999
Q ss_pred hhHHHHHHHhcCCCEEEEccCC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~ 106 (162)
.+.|.+.+++.+++.|+.-...
T Consensus 85 ~~vl~~L~~~~~~~~V~~~~~~ 106 (429)
T TIGR02765 85 EDVLPELIKELGVRTVFLHQEV 106 (429)
T ss_pred HHHHHHHHHHhCCCEEEEeccC
Confidence 9999999999999999987653
No 50
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=85.95 E-value=3.4 Score=36.80 Aligned_cols=103 Identities=12% Similarity=0.187 Sum_probs=61.1
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCC---CCccccchHHHHHH-HHhHHHhCCCCeEE--
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSH---HDSSACCPYLANSL-GSLCKACKPEVEVE-- 76 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~v~~~-- 76 (162)
.+|.+..=+.++.+.|+.++.+++.+++..+++++.++........ .......++..+.+ +...+. ..++...
T Consensus 615 ~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~i~~~~e 693 (769)
T KOG1650|consen 615 YKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRES-NLDIIYAEE 693 (769)
T ss_pred eEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhc-hhhhhhhhH
Confidence 3667777788888999999999999889999999999755432111 11111112222222 211111 1122222
Q ss_pred EEEEecCchhHHHHHHHhcCCCEEEEccCCC
Q 031262 77 ALVIQGPKLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 77 ~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
-.+..|...-.+++...+ ++|+.++|....
T Consensus 694 k~v~~~~et~~~~~~~~~-~ydL~ivGr~~~ 723 (769)
T KOG1650|consen 694 KIVLNGAETTALLRSITE-DYDLFIVGRSHG 723 (769)
T ss_pred HHHhcchhHHHHHHHhcc-ccceEEEecccc
Confidence 334455555666666665 889999999743
No 51
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=85.32 E-value=18 Score=29.25 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=54.9
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhC-CCCeEEEEEE
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACK-PEVEVEALVI 80 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~v~ 80 (162)
..++++++.|--+|.-|+-++.+ .|.++..+|+...+.. .++..+.+++++.... .+..+.....
T Consensus 172 ~~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~~~~~~----------~~~~~~~v~~l~~~l~~~~~~~~l~~v 237 (371)
T TIGR00342 172 QGKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFFNEPAA----------SEKAREKVERLANSLNETGGSVKLYVF 237 (371)
T ss_pred CCeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEeCCCCc----------cHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 36899999999999888877755 3778999998733211 1223344444444321 1222222221
Q ss_pred ecC-----------------c-----hhHHHHHHHhcCCCEEEEccCCC
Q 031262 81 QGP-----------------K-----LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 81 ~g~-----------------~-----~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.-. + .......|++.++|.|+.|.+..
T Consensus 238 ~~~~~~~~i~~~~~~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~ 286 (371)
T TIGR00342 238 DFTDVQEEIIHIIPEGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLG 286 (371)
T ss_pred eCHHHHHHHHhcCCCCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChH
Confidence 100 0 12335678899999999999853
No 52
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=84.62 E-value=12 Score=26.44 Aligned_cols=74 Identities=12% Similarity=0.041 Sum_probs=43.3
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEec-CchhHHHHHHHh---cCCCEEEEccCCCCcccccccccCCcchhHHHhhhhC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQG-PKLGTVMSQVRK---LEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKA 131 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g-~~~~~I~~~a~~---~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~ 131 (162)
....+...+.+++ -++.++..+..- ...+.+.+++++ .+++.+|.++-....+. .-+...+
T Consensus 13 ~~~~~~a~~~L~~--~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lp-------------gvva~~t 77 (150)
T PF00731_consen 13 LPIAEEAAKTLEE--FGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALP-------------GVVASLT 77 (150)
T ss_dssp HHHHHHHHHHHHH--TT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HH-------------HHHHHHS
T ss_pred HHHHHHHHHHHHH--cCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccch-------------hhheecc
Confidence 3445556666666 467788777553 335666666655 45788887776544443 3456778
Q ss_pred CceEEEEecCCCC
Q 031262 132 DCLTVGVRKQSKG 144 (162)
Q Consensus 132 ~~pVlvv~~~~~~ 144 (162)
.+||+-+|..+..
T Consensus 78 ~~PVIgvP~~~~~ 90 (150)
T PF00731_consen 78 TLPVIGVPVSSGY 90 (150)
T ss_dssp SS-EEEEEE-STT
T ss_pred CCCEEEeecCccc
Confidence 8999999876553
No 53
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=83.33 E-value=21 Score=28.28 Aligned_cols=92 Identities=13% Similarity=0.091 Sum_probs=54.9
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe-
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ- 81 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~- 81 (162)
+++++++.|--+|.-++.++.+. .|.+++.+|+....... .+..+..+..++. -+++..+.-..
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~---~G~~v~av~vd~G~~~~----------~E~e~~~~~~~~~--lgi~~~vvd~~e 81 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRA---IGDRLTCVFVDHGLLRK----------GEAEQVVKTFGDR--LGLNLVYVDAKE 81 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHH---hCCCEEEEEEeCCCCCh----------HHHHHHHHHHHHH--cCCcEEEEeCcH
Confidence 68999999998888877777653 35689999997554211 2232222233333 23333321110
Q ss_pred ---------cCc-----------hhHHHHHHHhcC-CCEEEEccCCCCc
Q 031262 82 ---------GPK-----------LGTVMSQVRKLE-VSVLVLGQKKHSA 109 (162)
Q Consensus 82 ---------g~~-----------~~~I~~~a~~~~-~dliVmG~~~~~~ 109 (162)
.++ ...+.++|++.+ ++.|+.|++....
T Consensus 82 ~fl~~l~~v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~ 130 (311)
T TIGR00884 82 RFLSALKGVTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDV 130 (311)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhh
Confidence 111 133556788888 9999999886443
No 54
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=83.13 E-value=4.3 Score=33.95 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=55.7
Q ss_pred CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHH
Q 031262 10 DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVM 89 (162)
Q Consensus 10 D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~ 89 (162)
|..-....||..|++. +.+|..+.+.++..... .........=+.+.+.++.+++. ...+...+..|++.+.|.
T Consensus 10 DLRl~DN~AL~~A~~~----~~~vl~vfi~dp~~~~~-~~~~~~r~~Fl~esL~~L~~~L~-~~G~~L~v~~G~p~~vl~ 83 (471)
T TIGR03556 10 DLRLSDNIGLAAARQQ----SAKVVGLFCLDPNILQA-DDMAPARVAYLIGCLQELQQRYQ-QAGSQLLILQGDPVQLIP 83 (471)
T ss_pred CCCcchHHHHHHHHhc----CCCEEEEEEEchhhhcc-ccCCHHHHHHHHHHHHHHHHHHH-HCCCCeEEEECCHHHHHH
Confidence 4444556688877752 45788899887542211 11111122334455555555442 123555667899999999
Q ss_pred HHHHhcCCCEEEEccC
Q 031262 90 SQVRKLEVSVLVLGQK 105 (162)
Q Consensus 90 ~~a~~~~~dliVmG~~ 105 (162)
+.+++.+++.|+.-..
T Consensus 84 ~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 84 QLAQQLGAKAVYWNLD 99 (471)
T ss_pred HHHHHcCCCEEEEecc
Confidence 9999999999987664
No 55
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=82.43 E-value=19 Score=28.64 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=61.7
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE--
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI-- 80 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~-- 80 (162)
.++++++.+.++|.-.+..|.+.+...+.++-++|+-... .-.+..++..++++++ ++++.+...
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~-----------~FpEt~efrD~~a~~~--gl~Liv~~~~~ 104 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTW-----------KFREMIDFRDRRAKEL--GLDLVVHHNPD 104 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCC-----------CCHHHHHHHHHHHHHh--CCcEEEecChH
Confidence 4577899999999999988887664445678899985443 2256677777777774 343332210
Q ss_pred ----------ec-----C--chhHHHHHHHhcCCCEEEEccCC
Q 031262 81 ----------QG-----P--KLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 81 ----------~g-----~--~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
.| + -.+.+.++.+++++|.++.|.+.
T Consensus 105 ~~~~G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RR 147 (312)
T PRK12563 105 GIARGIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARR 147 (312)
T ss_pred HHHhCCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCH
Confidence 01 0 13577778888899999999875
No 56
>PRK10867 signal recognition particle protein; Provisional
Probab=82.25 E-value=22 Score=29.57 Aligned_cols=92 Identities=13% Similarity=0.046 Sum_probs=56.0
Q ss_pred EEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCc
Q 031262 5 VMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPK 84 (162)
Q Consensus 5 Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~ 84 (162)
+++..-+|-.+..+...|..+....+..+.++..- ... ....+.++.+++. .++.+...-...+|
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D-~~R------------~aa~eQL~~~a~~--~gv~v~~~~~~~dp 168 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD-VYR------------PAAIEQLKTLGEQ--IGVPVFPSGDGQDP 168 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc-ccc------------hHHHHHHHHHHhh--cCCeEEecCCCCCH
Confidence 45556678788888888887765546777776653 221 2233455555555 45554322222344
Q ss_pred h---hHHHHHHHhcCCCEEEEccCCCCccc
Q 031262 85 L---GTVMSQVRKLEVSVLVLGQKKHSAFI 111 (162)
Q Consensus 85 ~---~~I~~~a~~~~~dliVmG~~~~~~~~ 111 (162)
. ...+++++..++|+|++-+.|+....
T Consensus 169 ~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d 198 (433)
T PRK10867 169 VDIAKAALEEAKENGYDVVIVDTAGRLHID 198 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcccC
Confidence 2 33445667778999999999976543
No 57
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=81.97 E-value=16 Score=26.74 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=57.9
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecC
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGP 83 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~ 83 (162)
-++|...|+-..-.+.+.|..+..+ +.++.++.. +.. .-...+.++..++. -++.+...-...+
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~-D~~------------R~ga~eQL~~~a~~--l~vp~~~~~~~~~ 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-GKKVALISA-DTY------------RIGAVEQLKTYAEI--LGVPFYVARTESD 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-STS------------STHHHHHHHHHHHH--HTEEEEESSTTSC
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-cccceeecC-CCC------------CccHHHHHHHHHHH--hccccchhhcchh
Confidence 3577778888888999999988766 888888875 222 13455666666666 2433322111224
Q ss_pred chhH---HHHHHHhcCCCEEEEccCCCCcccc
Q 031262 84 KLGT---VMSQVRKLEVSVLVLGQKKHSAFIN 112 (162)
Q Consensus 84 ~~~~---I~~~a~~~~~dliVmG~~~~~~~~~ 112 (162)
+.+. .++..++.++|+|++=+-|++....
T Consensus 68 ~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~ 99 (196)
T PF00448_consen 68 PAEIAREALEKFRKKGYDLVLIDTAGRSPRDE 99 (196)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHH
T ss_pred hHHHHHHHHHHHhhcCCCEEEEecCCcchhhH
Confidence 4343 3445566779999999999876543
No 58
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=81.90 E-value=1.4 Score=28.81 Aligned_cols=25 Identities=8% Similarity=0.185 Sum_probs=20.8
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCC
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
-...+.|.++++++++|++|+|...
T Consensus 48 ~~d~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 48 ITDPEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp TT-HHHHHHHHHHTTESEEEESSHH
T ss_pred CCCHHHHHHHHHHcCCCEEEECChH
Confidence 3447899999999999999999864
No 59
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=81.56 E-value=6.7 Score=32.37 Aligned_cols=82 Identities=13% Similarity=0.221 Sum_probs=46.7
Q ss_pred cchHHHHHHHHhHHHhCCCCeEE--EEEEecCc-hhHHHHHHHhcC---CCEEEEccCCCCcccccccccCCcchhHHHh
Q 031262 54 CCPYLANSLGSLCKACKPEVEVE--ALVIQGPK-LGTVMSQVRKLE---VSVLVLGQKKHSAFINCFCGTSSSEEFVDQC 127 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~--~~v~~g~~-~~~I~~~a~~~~---~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v 127 (162)
....+.+.++.+..++ +.+++. ...+.|+. ...|++..+..+ +|.||+|.-| |.+++++ .+-.+.+++.|
T Consensus 145 ~gAa~~D~~~~~~~r~-p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGG-GS~eDL~--~Fn~e~v~~ai 220 (438)
T PRK00286 145 TGAAIRDILTVLRRRF-PLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGG-GSLEDLW--AFNDEAVARAI 220 (438)
T ss_pred ccHHHHHHHHHHHhcC-CCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCC-CCHHHhh--ccCcHHHHHHH
Confidence 3344444445554443 444443 22335663 566666554333 6999999876 5566654 55555665544
Q ss_pred hhhCCceEEEEec
Q 031262 128 IKKADCLTVGVRK 140 (162)
Q Consensus 128 ~~~~~~pVlvv~~ 140 (162)
-.+++||+.-=-
T Consensus 221 -~~~~~Pvis~IG 232 (438)
T PRK00286 221 -AASRIPVISAVG 232 (438)
T ss_pred -HcCCCCEEEecc
Confidence 447999887533
No 60
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=81.54 E-value=11 Score=24.10 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=50.3
Q ss_pred EEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCc
Q 031262 5 VMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPK 84 (162)
Q Consensus 5 Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~ 84 (162)
|+|++.+..+|.-.+.++.+.. .++.++|+.....+ ..+ ..++.+++ ..
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----~~~~~~~~~~~~~~---------~~~----~~~~~~~~--------------~r 49 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----YQVIAVTVDHGISP---------RLE----DAKEIAKE--------------AR 49 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----CCEEEEEEcCCCcc---------cHH----HHHHHHHH--------------HH
Confidence 5889999999988888877652 26888888655432 111 22222222 34
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCc
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSA 109 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~ 109 (162)
.+.+.+.+++.+++.|+.|.+....
T Consensus 50 ~~~~~~~a~~~g~~~i~~g~~~~D~ 74 (103)
T cd01986 50 EEAAKRIAKEKGAETIATGTRRDDV 74 (103)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcchH
Confidence 6778888999999999999986543
No 61
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=80.76 E-value=15 Score=29.60 Aligned_cols=69 Identities=13% Similarity=0.162 Sum_probs=39.5
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEecCc----hhHHHHHHHhcCCCEEE-EccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQGPK----LGTVMSQVRKLEVSVLV-LGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~g~~----~~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..+.+.+.... .++.+......+++ .+.+.+.+++.++|.|| +|. ||+. ++++.+.-...
T Consensus 44 ~~~~v~~~l~~--~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGG-----------Gsv~--D~aK~iA~~~~ 108 (366)
T PRK09423 44 VGDRVEASLKE--AGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGG-----------GKTL--DTAKAVADYLG 108 (366)
T ss_pred HHHHHHHHHHh--CCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecC-----------hHHH--HHHHHHHHHcC
Confidence 44455544444 45554333345665 45666777788899877 443 2222 23355555557
Q ss_pred ceEEEEecC
Q 031262 133 CLTVGVRKQ 141 (162)
Q Consensus 133 ~pVlvv~~~ 141 (162)
.|++.|+-.
T Consensus 109 ~p~i~IPTt 117 (366)
T PRK09423 109 VPVVIVPTI 117 (366)
T ss_pred CCEEEeCCc
Confidence 898888764
No 62
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=79.42 E-value=22 Score=26.02 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=62.5
Q ss_pred cEEEEEeCCChhhHHHH-HHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 3 KRVMVVVDQTSHSKHAM-MWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al-~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
++|++++.+|-.+..+. +..-.+ .+.|.+++++-.-.........+ ...++...++.+. +..+.....+
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L-~~~g~~V~vI~S~~A~~~~~~~g----~~~~~i~~l~~~t-----g~~v~~~~~~ 70 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKL-VDEGAEVTPIVSETVQTTDTRFG----KGADWIKKIEEIT-----GRPAINTIVE 70 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHH-HhCcCEEEEEEchhHHHHHHHcC----ChHHHHHHHHHHH-----CCCCEEECCC
Confidence 58999999999999997 555555 55677766554321110000000 0112222222222 1112111111
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhh---hCCceEEEEecCCC
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIK---KADCLTVGVRKQSK 143 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~---~~~~pVlvv~~~~~ 143 (162)
.++.. ....+|.+|+.--..+.+.++-.|-..+ .+...+. +..+||++++.-+.
T Consensus 71 ~~~~~------~s~~~D~mVIaPcTanTLAKiA~GiaDn--lv~~aa~a~Lke~rPlvlaPamN~ 127 (187)
T TIGR02852 71 AEPFG------PKVPLDCMVIAPLTGNSMSKLANAMTDS--PVLMAAKATLRNNKPVVLAISTND 127 (187)
T ss_pred CcccC------CchhhCEEEEEeCCHhHHHHHHccccCc--HHHHHHHHHhcCCCCEEEEECcCH
Confidence 22211 1356788888876666676666665552 1122222 23799999987543
No 63
>PRK00074 guaA GMP synthase; Reviewed
Probab=78.07 E-value=42 Score=28.51 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=57.0
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE--
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI-- 80 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~-- 80 (162)
++|+|++.+-.+|.-++..+.+.. +.++..+|+...... ..+..+..+.+++. -+++..+.-.
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~~l---g~~v~av~vd~g~~~----------~~e~~~~~~~~a~~--lgi~~~vvd~~~ 280 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHKAI---GDQLTCVFVDHGLLR----------KNEAEQVMEMFREH--FGLNLIHVDASD 280 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHHHh---CCceEEEEEeCCCCC----------HHHHHHHHHHHHHH--cCCcEEEEccHH
Confidence 679999999988988777776543 567999998644321 12333333334454 2333332111
Q ss_pred ------ec--Cc-----------hhHHHHHHHhc-CCCEEEEccCCCCccc
Q 031262 81 ------QG--PK-----------LGTVMSQVRKL-EVSVLVLGQKKHSAFI 111 (162)
Q Consensus 81 ------~g--~~-----------~~~I~~~a~~~-~~dliVmG~~~~~~~~ 111 (162)
.| ++ ...+.+.+++. +++.|+-|++-....+
T Consensus 281 ~f~~~l~g~~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~~E 331 (511)
T PRK00074 281 RFLSALAGVTDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDVIE 331 (511)
T ss_pred HHHHhccCCCCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchhhh
Confidence 01 22 23557788888 9999999996554333
No 64
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=77.78 E-value=7 Score=25.47 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=43.8
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceE
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLT 135 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pV 135 (162)
.-+.+.+++.+++ .|+++++.- -+...+.++.+ ++|++++|..-+..+.++ +........||
T Consensus 14 s~la~km~~~a~~--~gi~~~i~a---~~~~e~~~~~~--~~Dvill~PQv~~~~~~i-----------~~~~~~~~ipv 75 (99)
T cd05565 14 GLLANALNKGAKE--RGVPLEAAA---GAYGSHYDMIP--DYDLVILAPQMASYYDEL-----------KKDTDRLGIKL 75 (99)
T ss_pred HHHHHHHHHHHHH--CCCcEEEEE---eeHHHHHHhcc--CCCEEEEcChHHHHHHHH-----------HHHhhhcCCCE
Confidence 4456778888888 676665332 22334555555 679999998754433321 55666678999
Q ss_pred EEEecC
Q 031262 136 VGVRKQ 141 (162)
Q Consensus 136 lvv~~~ 141 (162)
.++++.
T Consensus 76 ~~I~~~ 81 (99)
T cd05565 76 VTTTGK 81 (99)
T ss_pred EEeCHH
Confidence 999764
No 65
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=77.64 E-value=15 Score=29.27 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=41.7
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEecCc----hhHHHHHHHhcCCCEEE-EccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQGPK----LGTVMSQVRKLEVSVLV-LGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~g~~----~~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..+.+.+..++ .++.+...+..|++ .+.+.+.+++.++|.|| +|.- |+. ++++.+.-...
T Consensus 37 ~~~~v~~~l~~--~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG-----------s~~--D~aK~ia~~~~ 101 (349)
T cd08550 37 SRPRFEAALAK--SIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGG-----------KTL--DTAKAVADRLD 101 (349)
T ss_pred HHHHHHHHHHh--cCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCc-----------HHH--HHHHHHHHHcC
Confidence 34455554444 35555544445664 45667778889999877 6642 222 22255555567
Q ss_pred ceEEEEecC
Q 031262 133 CLTVGVRKQ 141 (162)
Q Consensus 133 ~pVlvv~~~ 141 (162)
+|++.|+-.
T Consensus 102 ~p~i~VPTt 110 (349)
T cd08550 102 KPIVIVPTI 110 (349)
T ss_pred CCEEEeCCc
Confidence 899999864
No 66
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=77.35 E-value=23 Score=25.11 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=28.7
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCC
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPP 42 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~ 42 (162)
++++++.|..+|.-++.++.+. |.+++.+|+....
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~----g~~v~av~~d~g~ 35 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR----GIEVDALHFNSGP 35 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc----CCeEEEEEEeCCC
Confidence 5899999999999888888763 7789999987554
No 67
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=77.33 E-value=23 Score=25.21 Aligned_cols=50 Identities=4% Similarity=0.091 Sum_probs=31.8
Q ss_pred HHHHHHHhHHHhCCCCeEEEEE-E--ecCchhHHHHHHHhcCCCEEEEccCCC
Q 031262 58 LANSLGSLCKACKPEVEVEALV-I--QGPKLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v-~--~g~~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
..+.+.+...+..+++++...- . ..+..+.|++.+++.++|+|++|--.+
T Consensus 60 ~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~P 112 (172)
T PF03808_consen 60 VLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAP 112 (172)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCC
Confidence 3334443333334676665322 1 123489999999999999999998543
No 68
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=77.24 E-value=26 Score=26.49 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=30.1
Q ss_pred hHHHHHHHHhHHHhC-CCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccC
Q 031262 56 PYLANSLGSLCKACK-PEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~-~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~ 105 (162)
....++++++.+... .+.++.+.+ +|-....-+..+.+.++|.+|+|+.
T Consensus 160 ~~~l~KI~~lr~~~~~~~~~~~IeV-DGGI~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 160 DLILDRVIQVENRLGNRRVEKLISI-DGSMTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEE-ECCCCHHHHHHHHHCCCCEEEEChh
Confidence 445555554433321 455566666 6766555555667788999999964
No 69
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=76.51 E-value=13 Score=30.75 Aligned_cols=83 Identities=17% Similarity=0.250 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHhHHHhCCCCeEE--EEEEecCc-hhHHHHHHH----hcCCCEEEEccCCCCcccccccccCCcchhHH
Q 031262 53 ACCPYLANSLGSLCKACKPEVEVE--ALVIQGPK-LGTVMSQVR----KLEVSVLVLGQKKHSAFINCFCGTSSSEEFVD 125 (162)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~v~~~--~~v~~g~~-~~~I~~~a~----~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~ 125 (162)
.....+.+.++.+..++ +.+++. ...+.|+. ...|++..+ ..++|.||+|.-| |.+++++ .+..+.++.
T Consensus 138 ~~~aa~~D~~~~~~~r~-p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGG-Gs~eDL~--~Fn~e~~~r 213 (432)
T TIGR00237 138 QTGAALADILHILKRRD-PSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGG-GSLEDLW--SFNDEKVAR 213 (432)
T ss_pred CccHHHHHHHHHHHhhC-CCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCC-CCHHHhh--hcCcHHHHH
Confidence 34444445555555553 444443 22335664 455555443 3347999999866 5566654 455455544
Q ss_pred HhhhhCCceEEEEec
Q 031262 126 QCIKKADCLTVGVRK 140 (162)
Q Consensus 126 ~v~~~~~~pVlvv~~ 140 (162)
.| -.+++||+.-=.
T Consensus 214 ai-~~~~~Pvis~iG 227 (432)
T TIGR00237 214 AI-FLSKIPIISAVG 227 (432)
T ss_pred HH-HcCCCCEEEecC
Confidence 44 458899887533
No 70
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=76.30 E-value=25 Score=25.04 Aligned_cols=86 Identities=19% Similarity=0.200 Sum_probs=49.3
Q ss_pred EEEEEeC---------CChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCe
Q 031262 4 RVMVVVD---------QTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVE 74 (162)
Q Consensus 4 ~Ilv~vD---------~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 74 (162)
+|+|.++ ..+.+.+++..|.+++. .+.++.++.+=+.. .+.. ++. +.. .|.+
T Consensus 1 ~ilV~~e~~~~~~~~~l~~~~~e~l~~A~~l~~-~~~~v~~v~~G~~~------------~~~~---~~~-~~~--~Gad 61 (181)
T cd01985 1 KILVLVEHVPDTAELVLNPLDLEAVEAALRLKE-YGGEVTALVIGPPA------------AEVA---LRE-ALA--MGAD 61 (181)
T ss_pred CEEEEEEEEcCCCccccCHhhHHHHHHHHHHhh-cCCeEEEEEECChH------------HHHH---HHH-HHH--hCCC
Confidence 3566665 46677889998888865 44566655542211 0111 111 112 2333
Q ss_pred EEEEEEe-----cCc---hhHHHHHHHhcCCCEEEEccCCCC
Q 031262 75 VEALVIQ-----GPK---LGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 75 ~~~~v~~-----g~~---~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
--..+.. .++ .+.|.+.+++.++|+|++|++..+
T Consensus 62 ~v~~~~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~~g 103 (181)
T cd01985 62 KVLLVEDPALAGYDPEATAKALAALIKKEKPDLILAGATSIG 103 (181)
T ss_pred EEEEEecCcccCCChHHHHHHHHHHHHHhCCCEEEECCcccc
Confidence 2222211 122 577888889989999999998753
No 71
>PRK00509 argininosuccinate synthase; Provisional
Probab=75.77 E-value=44 Score=27.54 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=31.8
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCC
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPP 41 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~ 41 (162)
|+++|++++.+--+|.-++.|+.+. .+.+++.+++.-.
T Consensus 1 ~~~kVvva~SGGlDSsvla~~l~e~---lG~eViavt~d~G 38 (399)
T PRK00509 1 MKKKVVLAYSGGLDTSVIIKWLKET---YGCEVIAFTADVG 38 (399)
T ss_pred CCCeEEEEEcCCHHHHHHHHHHHHh---hCCeEEEEEEecC
Confidence 7889999999999999999998763 2678999998744
No 72
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=75.27 E-value=5.7 Score=28.97 Aligned_cols=117 Identities=11% Similarity=-0.022 Sum_probs=63.5
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHH----HhHHHhCCCCeEEE
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLG----SLCKACKPEVEVEA 77 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~ 77 (162)
|++|++++.+|-.+..+.+.+-.+.+..|.++.++-.-. .+++..... +....+...+.
T Consensus 1 ~k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv~T~~--------------A~~fv~~~~~~~~~~~~~l~~~v~--- 63 (185)
T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVLRDVGEIETHLVISQA--------------ARQTLAHETDFSLRDVQALADVVH--- 63 (185)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEEECHH--------------HHHHHHHHHCCChhhHHHhcCccc---
Confidence 679999999999999999999888654566755544211 111111110 00111101110
Q ss_pred EEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHH---hhhhCCceEEEEecC
Q 031262 78 LVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQ---CIKKADCLTVGVRKQ 141 (162)
Q Consensus 78 ~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~---v~~~~~~pVlvv~~~ 141 (162)
...+....|..- +..+|++|+.--..+.+.+.-.|-.. +.+.. +.-..++|+++++..
T Consensus 64 --~~~~~~~~i~~~--s~~aD~~vIaPaTaNtlAKiA~GiaD--nLlt~~a~~~L~~~~pvii~P~~ 124 (185)
T PRK06029 64 --DVRDIGASIASG--SFGTDGMVIAPCSMKTLAKIAHGYSD--NLITRAADVMLKERRRLVLCVRE 124 (185)
T ss_pred --ChhhcccChhhc--CchhCEEEEeeCCHhHHHHHHccccC--cHHHHHHHHHHhcCCCEEEEecc
Confidence 001111112111 12579999988777777776666544 12122 233478999999964
No 73
>PRK05920 aromatic acid decarboxylase; Validated
Probab=75.24 E-value=6.3 Score=29.24 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=28.7
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEE
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLH 37 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~h 37 (162)
|+++|++++-+|-.+..+++..-.+.+ .|.+++++-
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~-~g~~V~vi~ 37 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLA-ADYEVHLVI 37 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 789999999999988888888877754 466665554
No 74
>PRK08576 hypothetical protein; Provisional
Probab=74.54 E-value=42 Score=28.00 Aligned_cols=85 Identities=20% Similarity=0.217 Sum_probs=54.4
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEE-E---
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEAL-V--- 79 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v--- 79 (162)
+++|++.|.++|..++..+.+... .+.++++..... + .+..+.++++++.+ ++++... +
T Consensus 236 rVvVafSGGKDStvLL~La~k~~~----~V~aV~iDTG~e-~----------pet~e~~~~lae~L--GI~lii~~v~~~ 298 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAFG----DVTAVYVDTGYE-M----------PLTDEYVEKVAEKL--GVDLIRAGVDVP 298 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhCC----CCEEEEeCCCCC-C----------hHHHHHHHHHHHHc--CCCEEEcccCHH
Confidence 799999999999999988877542 267777643321 1 23455666676663 4444320 0
Q ss_pred ----EecCc-----------hhHHHHHHHhcCCCEEEEccC
Q 031262 80 ----IQGPK-----------LGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 80 ----~~g~~-----------~~~I~~~a~~~~~dliVmG~~ 105 (162)
..|.+ .+.+.+++++.+++.++.|.+
T Consensus 299 ~~~~~~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R 339 (438)
T PRK08576 299 MPIEKYGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDR 339 (438)
T ss_pred HHhhhcCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEee
Confidence 01111 246777888899999999975
No 75
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=74.34 E-value=31 Score=26.22 Aligned_cols=71 Identities=6% Similarity=0.148 Sum_probs=46.8
Q ss_pred chhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCC----CCCCcEEEec--eeece
Q 031262 84 KLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQS----KGMGGYIIST--RWQKN 157 (162)
Q Consensus 84 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~----~~~~~~~~~~--~~~~~ 157 (162)
....|.+.+.+.+-|.|++|.+..-..... -.+. +.+..+.+.||++.+... +.-..+.+.+ |+-+-
T Consensus 29 ~~~ei~~~~~~~GTDaImIGGS~gvt~~~~--~~~v-----~~ik~~~~lPvilfP~~~~~is~~aDavff~svLNS~n~ 101 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIGGSDGVTEENV--DNVV-----EAIKERTDLPVILFPGSPSGISPYADAVFFPSVLNSDNP 101 (240)
T ss_pred ccHHHHHHHHHcCCCEEEECCcccccHHHH--HHHH-----HHHHhhcCCCEEEecCChhccCccCCeEEEEEEecCCCc
Confidence 367889999999999999998753221111 1222 666668899999997742 2223455544 77888
Q ss_pred eeec
Q 031262 158 FWLL 161 (162)
Q Consensus 158 ~~~~ 161 (162)
||+.
T Consensus 102 ~~i~ 105 (240)
T COG1646 102 YWIV 105 (240)
T ss_pred cccc
Confidence 8864
No 76
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=74.23 E-value=22 Score=29.42 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=21.6
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEE
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLL 36 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~ 36 (162)
|++|||+ =++....+++.|+++.. +.++..+
T Consensus 1 ~~~kVLv--lG~G~re~al~~~l~~~---g~~v~~~ 31 (435)
T PRK06395 1 MTMKVML--VGSGGREDAIARAIKRS---GAILFSV 31 (435)
T ss_pred CceEEEE--ECCcHHHHHHHHHHHhC---CCeEEEE
Confidence 7889999 34446789999998654 3444444
No 77
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=73.85 E-value=8.2 Score=28.67 Aligned_cols=69 Identities=4% Similarity=0.063 Sum_probs=40.0
Q ss_pred hHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCC----CCCcEEEec--eeeceee
Q 031262 86 GTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK----GMGGYIIST--RWQKNFW 159 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~----~~~~~~~~~--~~~~~~~ 159 (162)
+.+...+.+.+.|.|.+|.+..-...+ +..+. +.+-++.++||++.+.... .-..+++.+ ++-+.+|
T Consensus 14 ~~ia~~v~~~gtDaI~VGGS~gvt~~~--~~~~v-----~~ik~~~~lPvilfp~~~~~i~~~aD~~~~~sllns~~~~~ 86 (205)
T TIGR01769 14 EKIAKNAKDAGTDAIMVGGSLGIVESN--LDQTV-----KKIKKITNLPVILFPGNVNGLSRYADAVFFMSLLNSADTYF 86 (205)
T ss_pred HHHHHHHHhcCCCEEEEcCcCCCCHHH--HHHHH-----HHHHhhcCCCEEEECCCccccCcCCCEEEEEEeecCCCcch
Confidence 345567778889999998662111111 11222 4444457899999866422 123555554 6667777
Q ss_pred ec
Q 031262 160 LL 161 (162)
Q Consensus 160 ~~ 161 (162)
+.
T Consensus 87 i~ 88 (205)
T TIGR01769 87 IV 88 (205)
T ss_pred hh
Confidence 64
No 78
>PRK04527 argininosuccinate synthase; Provisional
Probab=73.69 E-value=50 Score=27.23 Aligned_cols=101 Identities=7% Similarity=0.041 Sum_probs=56.5
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCC----------CCCCc----cccchHHHH-HHHHh
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNT----------SHHDS----SACCPYLAN-SLGSL 65 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~----------~~~~~----~~~~~~~~~-~~~~~ 65 (162)
|.++|+|++.+--+|--++.|+.+ .|.+++.+++........ ..+-. -...++..+ .+..+
T Consensus 1 ~~~kVvVA~SGGvDSSvla~~l~e----~G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~vi~p~ 76 (400)
T PRK04527 1 SSKDIVLAFSGGLDTSFCIPYLQE----RGYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGFVKPL 76 (400)
T ss_pred CCCcEEEEEcCChHHHHHHHHHHH----cCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHHHHH
Confidence 678999999999999999998776 266788888864332110 00000 000011111 11111
Q ss_pred HHH--hCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCC
Q 031262 66 CKA--CKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 66 ~~~--~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.+. +..|.... .....+ ...+++.|++.++|.|.=|+++.
T Consensus 77 i~aNa~y~G~yPl--~~~nR~~~~~~l~e~A~~~G~~~IA~G~tgk 120 (400)
T PRK04527 77 VWAGEGYQGQYPL--LVSDRYLIVDAALKRAEELGTRIIAHGCTGM 120 (400)
T ss_pred HhcchhhcCCCCC--ccccHHHHHHHHHHHHHHCCCCEEEecCcCC
Confidence 111 11111110 001222 67899999999999999999855
No 79
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=71.95 E-value=9.9 Score=24.44 Aligned_cols=68 Identities=13% Similarity=0.146 Sum_probs=41.6
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEE
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVG 137 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlv 137 (162)
+.+.+++.+++ .++++++.- .+. ..+.+... ++|+|++|..-+..+.. . +.......+||.+
T Consensus 19 l~~k~~~~~~~--~gi~~~v~a--~~~-~~~~~~~~--~~Dvill~pqi~~~~~~------i-----~~~~~~~~ipv~~ 80 (95)
T TIGR00853 19 LVNKMNKAAEE--YGVPVKIAA--GSY-GAAGEKLD--DADVVLLAPQVAYMLPD------L-----KKETDKKGIPVEV 80 (95)
T ss_pred HHHHHHHHHHH--CCCcEEEEE--ecH-HHHHhhcC--CCCEEEECchHHHHHHH------H-----HHHhhhcCCCEEE
Confidence 55677888777 566654333 222 22334444 57999999864332222 1 4556777899999
Q ss_pred EecCCC
Q 031262 138 VRKQSK 143 (162)
Q Consensus 138 v~~~~~ 143 (162)
+++...
T Consensus 81 I~~~~Y 86 (95)
T TIGR00853 81 INGAQY 86 (95)
T ss_pred eChhhc
Confidence 988643
No 80
>PRK00919 GMP synthase subunit B; Validated
Probab=71.13 E-value=50 Score=26.14 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=30.3
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCC
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPP 42 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~ 42 (162)
.++++|++.|--+|.-++.++.+. .|.+++.+|+....
T Consensus 21 ~~kVlVa~SGGVDSsvla~la~~~---lG~~v~aV~vD~G~ 58 (307)
T PRK00919 21 DGKAIIALSGGVDSSVAAVLAHRA---IGDRLTPVFVDTGL 58 (307)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHH---hCCeEEEEEEECCC
Confidence 368999999999998888877663 46789999997554
No 81
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=70.73 E-value=6.5 Score=27.17 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=34.4
Q ss_pred hhHHHHHHHhcCCCEEEEccCCC-Cccc---ccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKH-SAFI---NCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~-~~~~---~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
.+.|.+++++++++.||+|-.-. ++.. ....- ++++.+.++.++||..+..+
T Consensus 43 ~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~-----~f~~~L~~~~~~~v~~~DEr 98 (138)
T PRK00109 43 WDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERAR-----KFANRLEGRFGLPVVLVDER 98 (138)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHH-----HHHHHHHHHhCCCEEEEcCC
Confidence 78899999999999999995322 1111 11111 22366666678999998765
No 82
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=70.53 E-value=28 Score=28.96 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=39.4
Q ss_pred CCCeEE--EEEEecCc-hhHHHHHH---HhcC-CCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 71 PEVEVE--ALVIQGPK-LGTVMSQV---RKLE-VSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 71 ~~v~~~--~~v~~g~~-~~~I~~~a---~~~~-~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
|.+++. -..+.|+. .+.|++.+ ++.+ +|.||+|.-| |.+++++ ++..+.+ -+-+-.++.||+--=.
T Consensus 161 P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGG-GSiEDLW--~FNdE~v-aRAi~~s~iPvISAVG 233 (440)
T COG1570 161 PSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGG-GSIEDLW--AFNDEIV-ARAIAASRIPVISAVG 233 (440)
T ss_pred CCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCc-chHHHHh--ccChHHH-HHHHHhCCCCeEeecc
Confidence 555543 22335664 66666554 3444 9999999866 6688765 4443333 3344558899886533
No 83
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=70.37 E-value=54 Score=27.39 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=64.6
Q ss_pred EEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCc
Q 031262 5 VMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPK 84 (162)
Q Consensus 5 Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~ 84 (162)
.||.+-+|-....+-..|..+-+ .+-.+-++..- .+ .....+.++.++++ -++++-..-.+-+|
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD-~~------------RpAA~eQL~~La~q--~~v~~f~~~~~~~P 167 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAAD-TY------------RPAAIEQLKQLAEQ--VGVPFFGSGTEKDP 167 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHH-cCCceEEEecc-cC------------ChHHHHHHHHHHHH--cCCceecCCCCCCH
Confidence 56778888888888888887766 66666666542 22 23455677777777 45554433212344
Q ss_pred ---hhHHHHHHHhcCCCEEEEccCCCCccccccc
Q 031262 85 ---LGTVMSQVRKLEVSVLVLGQKKHSAFINCFC 115 (162)
Q Consensus 85 ---~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~ 115 (162)
+..=++++++..+|+|++-+-|+..+..-++
T Consensus 168 v~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm 201 (451)
T COG0541 168 VEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELM 201 (451)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHH
Confidence 4666788899999999999999887765443
No 84
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=70.37 E-value=26 Score=28.72 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=64.8
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
+|+|++++.+|-.+..+++.+-.+ .+.|+++.++-.-+.. +++..+.-++..+-.+-+ ..+
T Consensus 4 ~k~ill~v~gsiaayk~~~l~r~L-~~~ga~v~vvmt~~a~-----------------~fv~p~~~~~~s~~~v~t-~~~ 64 (392)
T COG0452 4 GKRILLGVTGSIAAYKSVELVRLL-RRSGAEVRVVMTESAR-----------------KFITPLTFQALSGNPVYT-LLD 64 (392)
T ss_pred CceEEEEecCchhhhhHHHHHHHH-hhCCCeeEEEcchhhh-----------------hhcCcccHHHhhCCCccc-ccc
Confidence 579999999999999998877765 5677887766532111 111111111100111111 222
Q ss_pred cCchhHH--HHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCCCC
Q 031262 82 GPKLGTV--MSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSKGM 145 (162)
Q Consensus 82 g~~~~~I--~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~~~ 145 (162)
......+ ++.++ .+|++++.-...+.+.+.-.|-.. +.+...+-.+.||+++.+.-+..+
T Consensus 65 ~~~~~~~~HI~l~~--~adl~lvaPaTan~i~Kla~g~aD--~~~t~~~~a~~~p~~~aPamn~~M 126 (392)
T COG0452 65 EELTGSVEHIELAR--WADLLLVAPATANTIAKLAVGIAD--NLSTTTLLAAKAPLVLAPAMNVIM 126 (392)
T ss_pred ccccccccHhhhhh--ccCEEEecCCChhHHHHHHHhhhc--cHHHHHHHHhcCcEEEecCcCHHH
Confidence 2221221 23333 779988887776666653333222 111334555677999987754433
No 85
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=70.21 E-value=50 Score=25.78 Aligned_cols=84 Identities=14% Similarity=0.249 Sum_probs=46.7
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
++||.|-+.++.....|+-.+.+. ...++++.++-...+ .++.++++ .++.+...-..
T Consensus 89 ~~ri~vl~Sg~gsnl~al~~~~~~-~~~~~~i~~visn~~-------------------~~~~lA~~--~gIp~~~~~~~ 146 (286)
T PRK06027 89 RKRVVILVSKEDHCLGDLLWRWRS-GELPVEIAAVISNHD-------------------DLRSLVER--FGIPFHHVPVT 146 (286)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHc-CCCCcEEEEEEEcCh-------------------hHHHHHHH--hCCCEEEeccC
Confidence 345666666666666666665543 223444444433211 12223444 46665432211
Q ss_pred ----cCchhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 ----GPKLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 ----g~~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.+....+.+..++.++|++|+...++
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~Dlivlagy~~ 176 (286)
T PRK06027 147 KETKAEAEARLLELIDEYQPDLVVLARYMQ 176 (286)
T ss_pred ccccchhHHHHHHHHHHhCCCEEEEecchh
Confidence 12345788999999999999998653
No 86
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=70.16 E-value=22 Score=26.67 Aligned_cols=48 Identities=8% Similarity=0.126 Sum_probs=35.3
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
..++.+..++.++|.||+++..... =|.. -+..++..++.|.+++...
T Consensus 49 eaav~~~~e~~~pDfvi~isPNpaa-----PGP~----kARE~l~~s~~PaiiigDa 96 (277)
T COG1927 49 EAAVTEMLEEFNPDFVIYISPNPAA-----PGPK----KAREILSDSDVPAIIIGDA 96 (277)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCC-----CCch----HHHHHHhhcCCCEEEecCC
Confidence 4566678899999999999865431 1222 2388999999999999763
No 87
>PRK14057 epimerase; Provisional
Probab=69.89 E-value=48 Score=25.51 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=31.6
Q ss_pred cchHHHHHHHHhHHHhC-CCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccC
Q 031262 54 CCPYLANSLGSLCKACK-PEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~-~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~ 105 (162)
-.....++++++.+... .+.++.+.+ +|.....-+..+.+.++|.+|+|+.
T Consensus 172 Fi~~~l~KI~~lr~~~~~~~~~~~IeV-DGGI~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 172 RSSDLHERVAQLLCLLGDKREGKIIVI-DGSLTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCceEEE-ECCCCHHHHHHHHHCCCCEEEEChH
Confidence 33455555554443321 455566666 7776555555667788999999964
No 88
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=69.79 E-value=39 Score=24.39 Aligned_cols=121 Identities=9% Similarity=0.050 Sum_probs=59.6
Q ss_pred EEEEEeCCChhh-HHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhC-CCCeEEEEEEe
Q 031262 4 RVMVVVDQTSHS-KHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACK-PEVEVEALVIQ 81 (162)
Q Consensus 4 ~Ilv~vD~S~~s-~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~v~~ 81 (162)
||++++-+|-.. ...++....+.++.|.++.++-. . ..+++...+..+..-.. .+ .+......
T Consensus 1 ~i~~gitGsg~~l~e~v~~l~~L~~~~g~eV~vv~S---~-----------~A~~vi~~~~~~~~l~~~~~-~~~~~~~~ 65 (174)
T TIGR02699 1 RIAWGITGSGDKLPETYSIMKDVKNRYGDEIDVFLS---K-----------AGEQVVKWYKLWDKLENDFP-NFRVEINA 65 (174)
T ss_pred CEEEEEEccHHHHHHHHHHHHHHHHhcCCEEEEEEC---H-----------hHHHHHHHHHhHHHHhccCC-cccccCCC
Confidence 688999999444 55777777776566777655432 1 22333333321111000 11 01111111
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhh---hCCceEEEEecCCC
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIK---KADCLTVGVRKQSK 143 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~---~~~~pVlvv~~~~~ 143 (162)
+.+. ......-..+|.+|+.--..+.+.++-.|-..+ .+..++. +.++|+++++.-++
T Consensus 66 ~~p~--~sg~~~l~~~D~~vVaPaTaNtlakiA~GiaD~--l~t~~~~~~lk~~~pvvi~P~mn~ 126 (174)
T TIGR02699 66 NSPF--LAGQLQMGKYDFLLIAPATANTVAKIAYGIADT--LVTNAVIQAAKAKVPVYIMPSDYK 126 (174)
T ss_pred CCcc--ccCcccccccCEEEEEeCCHHHHHHHHccccCc--HHHHHHHHHhccCCCEEEEECcCC
Confidence 1111 111111113688888877666666666664441 1122222 46899999987555
No 89
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=69.77 E-value=58 Score=27.08 Aligned_cols=92 Identities=14% Similarity=0.097 Sum_probs=54.6
Q ss_pred EEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCc
Q 031262 5 VMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPK 84 (162)
Q Consensus 5 Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~ 84 (162)
++++.-+|-.+..+...|..+..+.+..+.++..-. .. ....+.++.++.. .++.+.......+|
T Consensus 103 ~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~-~R------------~~a~~QL~~~a~~--~gvp~~~~~~~~~P 167 (428)
T TIGR00959 103 LMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDL-YR------------PAAIEQLKVLGQQ--VGVPVFALGKGQSP 167 (428)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccc-cc------------hHHHHHHHHHHHh--cCCceEecCCCCCH
Confidence 455567787888888888886544566777775432 11 1233445555554 34444332222334
Q ss_pred h---hHHHHHHHhcCCCEEEEccCCCCccc
Q 031262 85 L---GTVMSQVRKLEVSVLVLGQKKHSAFI 111 (162)
Q Consensus 85 ~---~~I~~~a~~~~~dliVmG~~~~~~~~ 111 (162)
. ...++.+...++|+|++-+.|+....
T Consensus 168 ~~i~~~al~~~~~~~~DvVIIDTaGr~~~d 197 (428)
T TIGR00959 168 VEIARRALEYAKENGFDVVIVDTAGRLQID 197 (428)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccccC
Confidence 2 33455566778999999999876543
No 90
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=69.62 E-value=74 Score=27.58 Aligned_cols=94 Identities=15% Similarity=0.071 Sum_probs=53.3
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
.++|+|.-|.+-+...+..-....++..+.+-+..++-+... ..++.. .. .++++.+ .+.+.-+.+--
T Consensus 69 ~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~--eGYGl~----~~---~i~~~~~---~~~~LiItvD~ 136 (575)
T PRK11070 69 GTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFE--DGYGLS----PE---VVDQAHA---RGAQLIVTVDN 136 (575)
T ss_pred CCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCc--CCCCCC----HH---HHHHHHh---cCCCEEEEEcC
Confidence 357888887766655544444444445555222223322211 112221 11 2222222 25556666666
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
|...-.-++++++.++|+||.-+|..
T Consensus 137 Gi~~~e~i~~a~~~gidvIVtDHH~~ 162 (575)
T PRK11070 137 GISSHAGVAHAHALGIPVLVTDHHLP 162 (575)
T ss_pred CcCCHHHHHHHHHCCCCEEEECCCCC
Confidence 88888888999999999999999854
No 91
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=69.50 E-value=19 Score=27.91 Aligned_cols=93 Identities=16% Similarity=0.237 Sum_probs=50.1
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecC
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGP 83 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~ 83 (162)
+|-+.+.-...+..-++-|-++.+..++. .+.|+.-+.... ...+.....+..++.. +.+++-+.. .+.
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~-~I~h~tyPdnf~-------~e~EttIskI~~lAdD--p~mKaIVv~-q~v 72 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV-MIKHVTYPDNFM-------SEQETTISKIVSLADD--PDMKAIVVS-QAV 72 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH-EEEEEE--TTGG-------GCHHHHHHHHHGGGG---TTEEEEEEE--SS
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc-eEEEEeCCCccc-------chHHHHHHHHHHhccC--CCccEEEEe-CCC
Confidence 45555554445666666676666666654 778877444322 1234445555666655 564443333 444
Q ss_pred c-hhHHHHHHHhcCCCEEEEccCCC
Q 031262 84 K-LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 84 ~-~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
+ .-.-.+-+++...|++.+....+
T Consensus 73 pGt~~af~kIkekRpDIl~ia~~~~ 97 (275)
T PF12683_consen 73 PGTAEAFRKIKEKRPDILLIAGEPH 97 (275)
T ss_dssp ---HHHHHHHHHH-TTSEEEESS--
T ss_pred cchHHHHHHHHhcCCCeEEEcCCCc
Confidence 5 56667788899999999998754
No 92
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=69.40 E-value=49 Score=25.33 Aligned_cols=83 Identities=7% Similarity=-0.104 Sum_probs=45.3
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
++..+.++...+.....+.+-.-+...+. ...+.+.+++.++|-+++..........--+-..- ..++..++.
T Consensus 50 ~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~-----~~ia~~~~~ 124 (281)
T cd00408 50 EERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHF-----KAVADASDL 124 (281)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHH-----HHHHhcCCC
Confidence 34444444444443334444333322222 45556788999999999977543221110001111 456777889
Q ss_pred eEEEEecCCC
Q 031262 134 LTVGVRKQSK 143 (162)
Q Consensus 134 pVlvv~~~~~ 143 (162)
|+++...+..
T Consensus 125 pi~iYn~P~~ 134 (281)
T cd00408 125 PVILYNIPGR 134 (281)
T ss_pred CEEEEECccc
Confidence 9999877654
No 93
>PRK05370 argininosuccinate synthase; Validated
Probab=68.93 E-value=39 Score=28.26 Aligned_cols=101 Identities=11% Similarity=0.057 Sum_probs=60.8
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCC---CCC-------CCCCCc----cccchHHHHHHHHhHH
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPP---KPN-------TSHHDS----SACCPYLANSLGSLCK 67 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~---~~~-------~~~~~~----~~~~~~~~~~~~~~~~ 67 (162)
+++|++++.+.-++.-++.|-.+. +.+++.+++.-.+ ... ...+.. ....+++. ++.+.
T Consensus 11 ~~KVvLAYSGGLDTSv~l~wL~e~----~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~---e~~i~ 83 (447)
T PRK05370 11 GQRVGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLV---AEGIA 83 (447)
T ss_pred CCEEEEEecCCchHHHHHHHHHhc----CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHH---HHHHH
Confidence 578999999999999999998764 7889999987433 111 000110 11112222 22221
Q ss_pred HhCCCCeE----E----EEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCc
Q 031262 68 ACKPEVEV----E----ALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSA 109 (162)
Q Consensus 68 ~~~~~v~~----~----~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~ 109 (162)
....+.-+ + ....-+.| +..+++.|++.++|.|.=|++|.+.
T Consensus 84 aI~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGN 135 (447)
T PRK05370 84 AIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGN 135 (447)
T ss_pred HHHcCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCC
Confidence 11122211 1 11111334 8999999999999999999998753
No 94
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=68.23 E-value=15 Score=24.16 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=42.7
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEE
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTV 136 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVl 136 (162)
-+.+.+++.+++ .|+++++.- .+ ...+.++....++|+|++|..-+-.... . +.......+||.
T Consensus 16 lla~k~k~~~~e--~gi~~~i~a--~~-~~e~~~~~~~~~~DvIll~PQi~~~~~~------i-----~~~~~~~~ipv~ 79 (104)
T PRK09590 16 MMAKKTTEYLKE--QGKDIEVDA--IT-ATEGEKAIAAAEYDLYLVSPQTKMYFKQ------F-----EEAGAKVGKPVV 79 (104)
T ss_pred HHHHHHHHHHHH--CCCceEEEE--ec-HHHHHHhhccCCCCEEEEChHHHHHHHH------H-----HHHhhhcCCCEE
Confidence 455667777777 566554322 22 2235555556678999999764322221 1 445556689999
Q ss_pred EEecCCC
Q 031262 137 GVRKQSK 143 (162)
Q Consensus 137 vv~~~~~ 143 (162)
++++...
T Consensus 80 ~I~~~~Y 86 (104)
T PRK09590 80 QIPPQAY 86 (104)
T ss_pred EeCHHHc
Confidence 9987544
No 95
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=68.15 E-value=69 Score=26.57 Aligned_cols=26 Identities=8% Similarity=0.176 Sum_probs=19.4
Q ss_pred CchhHHHHHHHhcCCCEEEEccCCCC
Q 031262 83 PKLGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 83 ~~~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
.....+++.+.+.+.+...+|+.+..
T Consensus 243 ~~~~~ll~~a~~~g~~~~wigs~~~~ 268 (458)
T cd06375 243 EDARELLAAAKRLNASFTWVASDGWG 268 (458)
T ss_pred HHHHHHHHHHHHcCCcEEEEEecccc
Confidence 34677888888888888888887653
No 96
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=67.81 E-value=68 Score=26.37 Aligned_cols=86 Identities=7% Similarity=0.050 Sum_probs=54.4
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCC-eEE-E----
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEV-EVE-A---- 77 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~-~---- 77 (162)
+|++++.+--+|.-++.|+.+. +.+++.+|+..... .+-.+.+++.|..+ ++ ... +
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id~Gq~------------~~e~~~a~~~a~~l--Gi~~~~viD~~~ 62 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTADVGQP------------EEDIDAIPEKALEY--GAENHYTIDARE 62 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEecCCC------------hHHHHHHHHHHHHh--CCCeEEEEeCHH
Confidence 5899999999999999888753 67899999964421 11122333333332 11 110 0
Q ss_pred --------------EEEec---------Cc--hhHHHHHHHhcCCCEEEEccCCC
Q 031262 78 --------------LVIQG---------PK--LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 78 --------------~v~~g---------~~--~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
...++ .+ .+.+.+.|++.++|.|+=|+.+.
T Consensus 63 ef~~~~~~~~i~~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~ 117 (394)
T TIGR00032 63 EFVKDYGFAAIQANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGK 117 (394)
T ss_pred HHHHhhchhhhcCCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCC
Confidence 00111 12 56689999999999999999764
No 97
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=67.78 E-value=55 Score=25.33 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=56.0
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEE----
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEAL---- 78 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---- 78 (162)
.+++|++.|.-+|--.+..|...+ |.++..+.+..+..+. +..+..+..+.+ .|++.+++
T Consensus 18 ~kv~vAfSGGvDSslLa~la~~~l---G~~v~AvTv~sP~~p~-----------~e~e~A~~~A~~--iGi~H~~i~~~~ 81 (269)
T COG1606 18 KKVVVAFSGGVDSSLLAKLAKEAL---GDNVVAVTVDSPYIPR-----------REIEEAKNIAKE--IGIRHEFIKMNR 81 (269)
T ss_pred CeEEEEecCCccHHHHHHHHHHHh---ccceEEEEEecCCCCh-----------hhhhHHHHHHHH--hCCcceeeehhh
Confidence 489999999888877777666544 6778888887655332 222233333333 12222211
Q ss_pred --------------EEecCchhHHHHHHHhcCCCEEEEccCC
Q 031262 79 --------------VIQGPKLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 79 --------------v~~g~~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
+......+.|++.|.+.++|.|+=|+..
T Consensus 82 ~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNa 123 (269)
T COG1606 82 MDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNA 123 (269)
T ss_pred cchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcH
Confidence 1112236889999999999999999974
No 98
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=67.69 E-value=38 Score=25.96 Aligned_cols=48 Identities=10% Similarity=0.080 Sum_probs=31.6
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCc-chhHHHhhhhCCceEEEE
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSS-EEFVDQCIKKADCLTVGV 138 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~-~~~~~~v~~~~~~pVlvv 138 (162)
.+..+.+.+.++...+|-+|+.....+. -+. +++ +.+-+.++.|||+=
T Consensus 163 ~~~~~~v~dtver~~aDaVI~tG~~TG~--------~~d~~el-~~a~~~~~~pvlvG 211 (263)
T COG0434 163 RSLEEAVKDTVERGLADAVIVTGSRTGS--------PPDLEEL-KLAKEAVDTPVLVG 211 (263)
T ss_pred cCHHHHHHHHHHccCCCEEEEecccCCC--------CCCHHHH-HHHHhccCCCEEEe
Confidence 3557888888999999999987765432 222 222 45556667777764
No 99
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=67.62 E-value=26 Score=26.78 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=33.2
Q ss_pred hHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 86 GTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
+......+++++|++|+.+.... .. |.+. ++..+..+..|++++...
T Consensus 50 ~~~~~~~~~~~pDf~i~isPN~a-~P----GP~~----ARE~l~~~~iP~IvI~D~ 96 (277)
T PRK00994 50 EVVKKMLEEWKPDFVIVISPNPA-AP----GPKK----AREILKAAGIPCIVIGDA 96 (277)
T ss_pred HHHHHHHHhhCCCEEEEECCCCC-CC----CchH----HHHHHHhcCCCEEEEcCC
Confidence 34555668999999999886422 11 2332 388999999999999764
No 100
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=67.31 E-value=35 Score=28.81 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=46.2
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCce
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCL 134 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~p 134 (162)
.+.+.+.+.++.+.. +.-.+.+.+..+...+.|..-+.+-.+|+|++..+.-+. |-.. ...++++.+|
T Consensus 287 ieDLaqlI~dLk~~~-~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGT------GAsP-----~~~~~~~GiP 354 (485)
T COG0069 287 IEDLAQLIKDLKEAN-PWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGT------GASP-----LTSIDHAGIP 354 (485)
T ss_pred HHHHHHHHHHHHhcC-CCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcC------CCCc-----HhHhhcCCch
Confidence 366666666665552 334477888888888888887888899999997765331 2223 4556667666
Q ss_pred E
Q 031262 135 T 135 (162)
Q Consensus 135 V 135 (162)
.
T Consensus 355 ~ 355 (485)
T COG0069 355 W 355 (485)
T ss_pred H
Confidence 4
No 101
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=65.74 E-value=18 Score=22.02 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=24.4
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEE
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTL 35 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l 35 (162)
++|.+++|.++....+.+...+.+...+-.+.+
T Consensus 44 ~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~ 76 (79)
T cd03364 44 KEVILAFDGDEAGQKAALRALELLLKLGLNVRV 76 (79)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEE
Confidence 678999999988888887777666655555443
No 102
>PLN02285 methionyl-tRNA formyltransferase
Probab=65.51 E-value=44 Score=26.67 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=26.4
Q ss_pred HHHhHHHhCCCCeEEEEEEecCc-hhHHHHHHHhcCCCEEEEccCCC
Q 031262 62 LGSLCKACKPEVEVEALVIQGPK-LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 62 ~~~~~~~~~~~v~~~~~v~~g~~-~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
+++.+.+ .++........... .+.+++..++.++|++|+.+.++
T Consensus 60 v~~~A~~--~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ 104 (334)
T PLN02285 60 VAQLALD--RGFPPDLIFTPEKAGEEDFLSALRELQPDLCITAAYGN 104 (334)
T ss_pred HHHHHHH--cCCCcceecCccccCCHHHHHHHHhhCCCEEEhhHhhh
Confidence 4445555 45553322222222 45667788899999999998654
No 103
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=65.12 E-value=34 Score=24.70 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=29.3
Q ss_pred HHHHhHHHhCCCCeEEEEEEecC--c--hhHHHHHHHhcCCCEEEEccCC
Q 031262 61 SLGSLCKACKPEVEVEALVIQGP--K--LGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 61 ~~~~~~~~~~~~v~~~~~v~~g~--~--~~~I~~~a~~~~~dliVmG~~~ 106 (162)
..+.+.++ .+++++... .|- + .+.|++.+++.++|+|++|--.
T Consensus 64 ~~~~l~~~-yP~l~i~g~--~g~f~~~~~~~i~~~I~~s~~dil~VglG~ 110 (177)
T TIGR00696 64 LKVKLIKE-YPKLKIVGA--FGPLEPEERKAALAKIARSGAGIVFVGLGC 110 (177)
T ss_pred HHHHHHHH-CCCCEEEEE--CCCCChHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 33444444 477776543 332 2 5789999999999999999754
No 104
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=64.92 E-value=12 Score=24.28 Aligned_cols=52 Identities=8% Similarity=0.077 Sum_probs=40.8
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCCCCC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSKGMG 146 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~~~~ 146 (162)
...=++.++..++-+||+.++-+..+++-+ +|-..-+++||+..+-.+.+.|
T Consensus 24 ~k~tiK~lk~gkaKliiiAsN~P~~~k~~i----------eyYAkLs~ipV~~y~Gt~~eLG 75 (100)
T COG1911 24 SKRTIKSLKLGKAKLIIIASNCPKELKEDI----------EYYAKLSDIPVYVYEGTSVELG 75 (100)
T ss_pred hHHHHHHHHcCCCcEEEEecCCCHHHHHHH----------HHHHHHcCCcEEEecCCceeHH
Confidence 345567888889999999999887666543 8888999999999987665543
No 105
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=64.35 E-value=15 Score=24.77 Aligned_cols=116 Identities=11% Similarity=0.022 Sum_probs=66.0
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEE-EEEe
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEA-LVIQ 81 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~v~~ 81 (162)
|||++++-+|.....+.++..++.+. |.++.++-- +...+.+.... .....+..+. ....
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~-g~~v~vv~S-----------------~~A~~~~~~~~-~~~~~v~~~~~~~~~ 61 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA-GWEVRVVLS-----------------PSAERFVTPEG-LTGEPVYTDWDTWDR 61 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT-TSEEEEEES-----------------HHHHHHSHHHG-HCCSCEECTHCTCST
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC-CCEEEEEEC-----------------CcHHHHhhhhc-cccchhhhccccCCC
Confidence 68999999999998888888877654 777655431 22223333222 2111111110 0112
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhC---CceEEEEecCC
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKA---DCLTVGVRKQS 142 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~---~~pVlvv~~~~ 142 (162)
++..+.+ +..+ .+|++|+.--..+.+-++-.|-.. +.+..++..+ +.||++++...
T Consensus 62 ~~~~~~~-~~~~--~~D~~vVaPaT~NtlaKiA~GiaD--~l~~~~~~~~l~~~~pvvi~P~mn 120 (129)
T PF02441_consen 62 GDPAEHI-ELSR--WADAMVVAPATANTLAKIANGIAD--NLLTRVALAALKEGKPVVIAPAMN 120 (129)
T ss_dssp TTTTCHH-HHHH--TESEEEEEEEEHHHHHHHHTT--S--SHHHHHHHHHHHTTCGEEEEEEES
T ss_pred CCCcCcc-cccc--cCCEEEEcccCHHHHHHHHhCCcc--hHHHHHHHHHccCCCCeEEEEeCC
Confidence 3334443 3355 479999988776667666666554 2335666666 99999997643
No 106
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=63.97 E-value=97 Score=26.80 Aligned_cols=72 Identities=8% Similarity=0.093 Sum_probs=46.1
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEec--Cc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQG--PK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g--~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
...+...+.++. -+++++..+..- .+ ...+++.+++.+++.+|.++-....+. .-+..++.
T Consensus 424 ~~~~~~~~~l~~--~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~-------------~~~a~~t~ 488 (577)
T PLN02948 424 PTMKDAAEILDS--FGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLP-------------GMVASMTP 488 (577)
T ss_pred HHHHHHHHHHHH--cCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccch-------------HHHhhccC
Confidence 344444555555 466777666542 22 455566677788998888886655444 33467788
Q ss_pred ceEEEEecCCC
Q 031262 133 CLTVGVRKQSK 143 (162)
Q Consensus 133 ~pVlvv~~~~~ 143 (162)
+||+-||....
T Consensus 489 ~pvi~vp~~~~ 499 (577)
T PLN02948 489 LPVIGVPVKTS 499 (577)
T ss_pred CCEEEcCCCCC
Confidence 99999988643
No 107
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=63.67 E-value=65 Score=24.70 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=30.7
Q ss_pred CCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCC---CcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 72 EVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKH---SAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 72 ~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~---~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
|+++..... .++-.+.++ .+|.+++|+..- |.+-+. .|+.. + --++++..+||+++-+.
T Consensus 158 gi~v~~i~d-----~~~~~~m~~-~vd~VliGad~v~~nG~v~nk-~Gt~~---~-a~~Ak~~~vPv~v~~~~ 219 (282)
T PF01008_consen 158 GIPVTLIPD-----SAVGYVMPR-DVDKVLIGADAVLANGGVVNK-VGTLQ---L-ALAAKEFNVPVYVLAES 219 (282)
T ss_dssp T-EEEEE-G-----GGHHHHHHC-TESEEEEE-SEEETTS-EEEE-TTHHH---H-HHHHHHTT-EEEEE--G
T ss_pred ceeEEEEec-----hHHHHHHHH-hCCeeEEeeeEEecCCCEeeh-hhHHH---H-HHHHHhhCCCEEEEccc
Confidence 655544441 334455554 689999999852 322221 23322 2 44677789999999654
No 108
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=62.85 E-value=46 Score=26.51 Aligned_cols=68 Identities=9% Similarity=0.106 Sum_probs=39.9
Q ss_pred HHHHHHhHHHhCCCCeEEEE-EEecCc----hhHHHHHHHhcCCCEEE-EccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 59 ANSLGSLCKACKPEVEVEAL-VIQGPK----LGTVMSQVRKLEVSVLV-LGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 59 ~~~~~~~~~~~~~~v~~~~~-v~~g~~----~~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
.+.+.+..+. .++++... ...+++ .+.+.+.+++.++|.|| +|.- |+. ++++.+.-...
T Consensus 38 ~~~v~~~l~~--~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGG-----------s~~--D~aK~ia~~~~ 102 (345)
T cd08171 38 KDKIKAALEQ--SGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGG-----------KAI--DTVKVLADKLG 102 (345)
T ss_pred HHHHHHHHHH--CCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCc-----------HHH--HHHHHHHHHcC
Confidence 4444444444 45555432 234555 45666777888999988 6642 222 22255555557
Q ss_pred ceEEEEecC
Q 031262 133 CLTVGVRKQ 141 (162)
Q Consensus 133 ~pVlvv~~~ 141 (162)
+|++.|+-.
T Consensus 103 ~p~i~VPTt 111 (345)
T cd08171 103 KPVFTFPTI 111 (345)
T ss_pred CCEEEecCc
Confidence 899999864
No 109
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=62.19 E-value=84 Score=25.47 Aligned_cols=91 Identities=14% Similarity=0.051 Sum_probs=57.3
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE-
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI- 80 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~- 80 (162)
.++|+|++.+.-+|.-++..+.+ .+.+++.+|+...... ...+-.+.++++|+.+ +++..+.-.
T Consensus 5 ~~kVlValSGGVDSsvaa~LL~~----~G~~V~~v~~~~~~~~---------~~~~d~~~a~~va~~L--gIp~~vvd~~ 69 (360)
T PRK14665 5 NKRVLLGMSGGTDSSVAAMLLLE----AGYEVTGVTFRFYEFN---------GSTEYLEDARALAERL--GIGHITYDAR 69 (360)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHH----cCCeEEEEEEecCCCC---------CChHHHHHHHHHHHHh--CCCEEEEecH
Confidence 46899999999988887777654 3677888887532111 0123344566666663 343332111
Q ss_pred ----------------ec---Cc---------hhHHHHHHHhcCCCEEEEccCCC
Q 031262 81 ----------------QG---PK---------LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 81 ----------------~g---~~---------~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.| +| ...+.++|++.++|.|+.|++-+
T Consensus 70 ~~f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 70 KVFRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred HHHHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 02 11 24567889999999999998763
No 110
>PRK06988 putative formyltransferase; Provisional
Probab=62.09 E-value=72 Score=25.16 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=46.2
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI 80 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~ 80 (162)
||.||++.-..+ -+..+|+..++ .+-++.++ +....... .+.....+++++.+ .++.+..
T Consensus 1 ~~mkIvf~Gs~~-~a~~~L~~L~~----~~~~i~~V--vt~~d~~~--------~~~~~~~v~~~A~~--~gip~~~--- 60 (312)
T PRK06988 1 MKPRAVVFAYHN-VGVRCLQVLLA----RGVDVALV--VTHEDNPT--------ENIWFGSVAAVAAE--HGIPVIT--- 60 (312)
T ss_pred CCcEEEEEeCcH-HHHHHHHHHHh----CCCCEEEE--EcCCCCCc--------cCcCCCHHHHHHHH--cCCcEEc---
Confidence 556777664443 45555555543 23445444 32221110 01111245666766 4665532
Q ss_pred ecCc-hhHHHHHHHhcCCCEEEEccCC
Q 031262 81 QGPK-LGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 81 ~g~~-~~~I~~~a~~~~~dliVmG~~~ 106 (162)
..+. .+.+.+..++.++|++|+-+.+
T Consensus 61 ~~~~~~~~~~~~l~~~~~Dliv~~~~~ 87 (312)
T PRK06988 61 PADPNDPELRAAVAAAAPDFIFSFYYR 87 (312)
T ss_pred cccCCCHHHHHHHHhcCCCEEEEehhc
Confidence 1232 4567888999999999988764
No 111
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=61.66 E-value=77 Score=24.89 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=55.0
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE---
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI--- 80 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~--- 80 (162)
+|++++.|--+|.-++..+.+. .|.+++.+|+...... .+-.+.++++|.+.. .++..+.-.
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~---lG~~v~aV~vd~g~~~-----------~~E~~~~~~~~~~~g-~i~~~vvd~~e~ 65 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA---IGDRLTCVFVDNGLLR-----------KNEAERVEELFSKLL-GINLIVVDASER 65 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH---hCCcEEEEEecCCCCC-----------hHHHHHHHHHHHHhC-CCcEEEEcCcHH
Confidence 5889999998888887777653 3567999998654321 111344556665531 113221110
Q ss_pred -------ecCc-----------hhHHHHHHHhcC-CCEEEEccCCCC
Q 031262 81 -------QGPK-----------LGTVMSQVRKLE-VSVLVLGQKKHS 108 (162)
Q Consensus 81 -------~g~~-----------~~~I~~~a~~~~-~dliVmG~~~~~ 108 (162)
..++ .+.+.++|++.+ ++.|+-|++...
T Consensus 66 fl~~l~~v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD 112 (295)
T cd01997 66 FLSALKGVTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPD 112 (295)
T ss_pred HHHHhcCCCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccc
Confidence 0111 224677889999 999999987544
No 112
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=60.99 E-value=45 Score=28.02 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=54.4
Q ss_pred CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHH
Q 031262 10 DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVM 89 (162)
Q Consensus 10 D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~ 89 (162)
|..-....||.+|++.... -+.++.+.++.... ..+ .....=+.+.++++.+.+. ...+...+..|++.+.+.
T Consensus 11 DLR~~DN~aL~~A~~~~~~---~~~~vfi~~~~~~~-~~~--~~~~~Fl~~sL~~L~~~L~-~~gi~L~v~~~~~~~~l~ 83 (461)
T COG0415 11 DLRLTDNAALAAACQSGQP---VIIAVFILDPEQLG-HAS--PRHAAFLLQSLQALQQSLA-ELGIPLLVREGDPEQVLP 83 (461)
T ss_pred ccccCChHHHHHHHhcCCC---ceEEEEEechhhcc-ccC--HHHHHHHHHHHHHHHHHHH-HcCCceEEEeCCHHHHHH
Confidence 4444556788888876532 23566666554332 111 1122333344555555542 233677888999999999
Q ss_pred HHHHhcCCCEEEEccCC
Q 031262 90 SQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 90 ~~a~~~~~dliVmG~~~ 106 (162)
+++++..++-|.-...-
T Consensus 84 ~~~~~~~~~~v~~n~~~ 100 (461)
T COG0415 84 ELAKQLAATTVFWNRDY 100 (461)
T ss_pred HHHHHhCcceEEeeeee
Confidence 99999988777766654
No 113
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=60.77 E-value=58 Score=23.16 Aligned_cols=69 Identities=9% Similarity=0.144 Sum_probs=38.6
Q ss_pred HHHHHHHhHHHhCCCCeEEEEE-Ee-cC-chhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCce
Q 031262 58 LANSLGSLCKACKPEVEVEALV-IQ-GP-KLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCL 134 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v-~~-g~-~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~p 134 (162)
..+.+.+...+..+++.+.... .. ++ ..+.|++.+++.++|+|++|--.+. ...+ ..+...+.+.+
T Consensus 58 ~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~Pk--QE~~---------~~~~~~~l~~~ 126 (171)
T cd06533 58 VLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVGLGAPK--QELW---------IARHKDRLPVP 126 (171)
T ss_pred HHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCH--HHHH---------HHHHHHHCCCC
Confidence 3333333333335777765321 11 11 2556899999999999999975432 1222 14455555666
Q ss_pred EEE
Q 031262 135 TVG 137 (162)
Q Consensus 135 Vlv 137 (162)
|++
T Consensus 127 v~~ 129 (171)
T cd06533 127 VAI 129 (171)
T ss_pred EEE
Confidence 555
No 114
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=60.63 E-value=70 Score=24.04 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=29.0
Q ss_pred hHHHHHHHHhHHHhC-CCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccC
Q 031262 56 PYLANSLGSLCKACK-PEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~-~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~ 105 (162)
....++++++.+... .+.++.+.+ +|-....-+..+.+.++|.+|+|+.
T Consensus 152 ~~~l~KI~~l~~~~~~~~~~~~IeV-DGGI~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 152 PSALDKLRAIRKKIDALGKPIRLEI-DGGVKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HHHHHHHHHHHHHHHhcCCCeeEEE-ECCCCHHHHHHHHHcCCCEEEEChh
Confidence 444445444433321 344566666 6666555555666678999999974
No 115
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=60.38 E-value=84 Score=26.33 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=54.3
Q ss_pred CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhC-CCCeEEEEEEe----cCc
Q 031262 10 DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACK-PEVEVEALVIQ----GPK 84 (162)
Q Consensus 10 D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~v~~----g~~ 84 (162)
|..-....||..|++.+ +.++..+.|.++..... .........=+.+.+.++..++. -|. ...+.. |++
T Consensus 11 DLRl~DN~aL~~A~~~~---~~~vlpvyv~dp~~~~~-~~~~~~r~~Fl~esL~~L~~~L~~~g~--~L~v~~g~~~g~~ 84 (472)
T PRK10674 11 DLRLHDNLALAAACRDP---SARVLALFIATPAQWAA-HDMAPRQAAFINAQLNALQIALAEKGI--PLLFHEVDDFAAS 84 (472)
T ss_pred CCCcchHHHHHHHHhCC---CCCEEEEEEECchhhcc-CCCCHHHHHHHHHHHHHHHHHHHHcCC--ceEEEecCCcCCH
Confidence 55556677888887644 24688999987642211 11112222334455555554432 343 344444 578
Q ss_pred hhHHHHHHHhcCCCEEEEccC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~ 105 (162)
.+.+.+.+++.+++-|+.-..
T Consensus 85 ~~vl~~l~~~~~i~~v~~~~~ 105 (472)
T PRK10674 85 VEWLKQFCQQHQVTHLFYNYQ 105 (472)
T ss_pred HHHHHHHHHHcCCCEEEEecc
Confidence 999999999999998887654
No 116
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=60.29 E-value=24 Score=22.60 Aligned_cols=68 Identities=9% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEE
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVG 137 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlv 137 (162)
+.+.+++.+++ .++++++.- .+.. .+.+.. .++|+|+++..-...+.++ +.......+||.+
T Consensus 15 ~~~ki~~~~~~--~~~~~~v~~--~~~~-~~~~~~--~~~Diil~~Pqv~~~~~~i-----------~~~~~~~~~pv~~ 76 (96)
T cd05564 15 LVKKMKKAAEK--RGIDAEIEA--VPES-ELEEYI--DDADVVLLGPQVRYMLDEV-----------KKKAAEYGIPVAV 76 (96)
T ss_pred HHHHHHHHHHH--CCCceEEEE--ecHH-HHHHhc--CCCCEEEEChhHHHHHHHH-----------HHHhccCCCcEEE
Confidence 45677788777 565544333 2222 233344 3679999998644332221 3334557899999
Q ss_pred EecCCC
Q 031262 138 VRKQSK 143 (162)
Q Consensus 138 v~~~~~ 143 (162)
+++...
T Consensus 77 I~~~~Y 82 (96)
T cd05564 77 IDMMDY 82 (96)
T ss_pred cChHhc
Confidence 988644
No 117
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=60.05 E-value=82 Score=24.69 Aligned_cols=116 Identities=12% Similarity=-0.000 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHhccCCCCE-EEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHH
Q 031262 14 HSKHAMMWALTHVTNKGDL-LTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMS 90 (162)
Q Consensus 14 ~s~~al~~A~~~a~~~~~~-l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~ 90 (162)
-...++++-++..-..|.+ |.++-...+.... ..++-.+-++...+.....+.+..-+...+. +-.+.+
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~L--------s~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak 93 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTL--------TLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAK 93 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchhc--------CHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHH
Confidence 6778888888877666633 3333222111110 1222222333333332233444333322222 566778
Q ss_pred HHHhcCCCEEEEccCCCCcccc-cccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 91 QVRKLEVSVLVLGQKKHSAFIN-CFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 91 ~a~~~~~dliVmG~~~~~~~~~-~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
++++.++|-+++-......... -+. ..- ..++..++.|+++..-++.
T Consensus 94 ~a~~~Gad~il~v~PyY~k~~~~gl~-~hf-----~~ia~a~~lPvilYN~P~~ 141 (299)
T COG0329 94 HAEKLGADGILVVPPYYNKPSQEGLY-AHF-----KAIAEAVDLPVILYNIPSR 141 (299)
T ss_pred HHHhcCCCEEEEeCCCCcCCChHHHH-HHH-----HHHHHhcCCCEEEEeCccc
Confidence 9999999999998875433221 111 111 5678888999999877655
No 118
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=59.88 E-value=43 Score=27.26 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=39.0
Q ss_pred cchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCC
Q 031262 54 CCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
..+++.+++.++.+.. ++..+.+.+..++..+.+...+.+..+|+|++-..+
T Consensus 186 s~edl~~~I~~Lr~~~-~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~ 237 (368)
T PF01645_consen 186 SIEDLAQLIEELRELN-PGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAE 237 (368)
T ss_dssp SHHHHHHHHHHHHHH--TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT
T ss_pred CHHHHHHHHHHHHhhC-CCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCC
Confidence 4466777777777763 678899999889998888888888999999997664
No 119
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=59.82 E-value=86 Score=24.83 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=35.9
Q ss_pred CCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCC---cccccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 72 EVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHS---AFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 72 ~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~---~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
|+++..++- .++-.+.+ ++|.+++|+++-. .+-+. .|... + --+.++...|++++-...+
T Consensus 170 gI~~~~I~D-----sa~~~~~~--~vd~VivGad~I~~nG~lvnk-iGT~~---l-A~~A~e~~~Pf~v~aesyK 232 (301)
T COG1184 170 GIPVTVIVD-----SAVGAFMS--RVDKVLVGADAILANGALVNK-IGTSP---L-ALAARELRVPFYVVAESYK 232 (301)
T ss_pred CCceEEEec-----hHHHHHHH--hCCEEEECccceecCCcEEec-cchHH---H-HHHHHHhCCCEEEEeeeec
Confidence 555555541 23334444 5799999998742 22222 23222 2 5578889999999966444
No 120
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=59.68 E-value=15 Score=25.12 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=34.6
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCc-----chhHHHhhhhCCceEEEEecC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSS-----EEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~-----~~~~~~v~~~~~~pVlvv~~~ 141 (162)
.+.|.+.+++++++.||+|-.-+. -|+.+. .++++.+....++||..+..+
T Consensus 37 ~~~l~~~i~~~~~~~iVvGlP~~~------dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr 92 (130)
T TIGR00250 37 WSRIEELLKEWTPDKIVVGLPLNM------DGTEGPLTERAQKFANRLEGRFGVPVVLWDER 92 (130)
T ss_pred HHHHHHHHHHcCCCEEEEeccCCC------CcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 788999999999999999953221 111110 123366666678999998775
No 121
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=59.67 E-value=1e+02 Score=25.68 Aligned_cols=92 Identities=8% Similarity=0.023 Sum_probs=54.1
Q ss_pred EEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCc
Q 031262 5 VMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPK 84 (162)
Q Consensus 5 Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~ 84 (162)
.+++.-++-.+..+...|..+. ..|.++.++..- .+ .....+.++.++.. .++.+.......+|
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~-~~G~kV~lV~~D-~~------------R~aA~eQLk~~a~~--~~vp~~~~~~~~dp 167 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQ-RKGFKPCLVCAD-TF------------RAGAFDQLKQNATK--ARIPFYGSYTESDP 167 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEcCc-cc------------chhHHHHHHHHhhc--cCCeEEeecCCCCH
Confidence 3556677777777888887654 446667666532 11 12334555555555 45555433333454
Q ss_pred hh---HHHHHHHhcCCCEEEEccCCCCcccc
Q 031262 85 LG---TVMSQVRKLEVSVLVLGQKKHSAFIN 112 (162)
Q Consensus 85 ~~---~I~~~a~~~~~dliVmG~~~~~~~~~ 112 (162)
.+ .-++.+++.++|+|++=+.|+.....
T Consensus 168 ~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~ 198 (429)
T TIGR01425 168 VKIASEGVEKFKKENFDIIIVDTSGRHKQED 198 (429)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCCcchH
Confidence 22 33455566688999999988876543
No 122
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=59.31 E-value=95 Score=25.19 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=53.0
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE-
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI- 80 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~- 80 (162)
+++|+|++.+.-+|.-++.+.. ..+.+++.+|...... + .+.++++|+.+ +++..+.-.
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~----~~G~eV~av~~~~~~~-------------e-~~~a~~va~~L--GI~~~vvd~~ 64 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQ----EQGYEIVGVTMRVWGD-------------E-PQDARELAARM--GIEHYVADER 64 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHH----HcCCcEEEEEecCcch-------------h-HHHHHHHHHHh--CCCEEEEeCh
Confidence 5789999999888877666533 2466788888742110 0 12345555552 333221110
Q ss_pred ----------------ecC-----------c-hhHHHHHHHhcCCCEEEEccCCC
Q 031262 81 ----------------QGP-----------K-LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 81 ----------------~g~-----------~-~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.|. . ...+.++|++.++|.|.-|++.+
T Consensus 65 ~~f~~~v~~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar 119 (362)
T PRK14664 65 VPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSR 119 (362)
T ss_pred HHHHHHHHHHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 011 1 34678899999999999999874
No 123
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=58.84 E-value=93 Score=24.93 Aligned_cols=99 Identities=12% Similarity=0.093 Sum_probs=57.1
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE--
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI-- 80 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~-- 80 (162)
++|+|++.+-.+|.-++..+.+ .+.++..+|+............ .....+-.+.++++|+.+ +++..+.-.
T Consensus 1 ~kVlValSGGvDSsvla~lL~~----~G~~V~~v~~~~~~~~~~~~~~-~~~s~~d~~~a~~~a~~L--gIp~~vvd~~~ 73 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE----QGYEVIGVFMKLWDDDDETGKG-GCCAEEDIADARRVADKL--GIPHYVVDFEK 73 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEeCCCcccccccC-CcCcHHHHHHHHHHHHHc--CCcEEEEeCHH
Confidence 4899999999888877665543 3567888888632211000000 001123334566666663 343332211
Q ss_pred ---------------ec----------C-c-hhHHHHHHHhcCCCEEEEccCCCC
Q 031262 81 ---------------QG----------P-K-LGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 81 ---------------~g----------~-~-~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
.| . . ...+.++|++.++|.|+.|++...
T Consensus 74 ~f~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d 128 (346)
T PRK00143 74 EFWDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARI 128 (346)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccc
Confidence 01 1 1 356778999999999999997654
No 124
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=58.82 E-value=76 Score=23.91 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=34.5
Q ss_pred cchHHHHHHHHhHHHhC-CCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccC
Q 031262 54 CCPYLANSLGSLCKACK-PEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~-~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~ 105 (162)
-..+..++++++.+... .+ ++.+.+ +|-....-+..+.+-++|.+|+|+-
T Consensus 149 Fi~~~l~Ki~~lr~~~~~~~-~~~IeV-DGGI~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 149 FIPEVLEKIRELRAMIDERL-DILIEV-DGGINLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred cCHHHHHHHHHHHHHhcccC-CeEEEE-eCCcCHHHHHHHHHcCCCEEEEEEE
Confidence 44566666666655533 33 566666 6777666777777889999999994
No 125
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=58.06 E-value=15 Score=22.49 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=21.3
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEE
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLT 34 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~ 34 (162)
++|++++|.+.+...+.....+.+...+-+++
T Consensus 47 ~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~ 78 (81)
T PF13662_consen 47 KEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVT 78 (81)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHG-------
T ss_pred ceEEEEeCcCHHHHHHHHHHHHHHHhhccccc
Confidence 67999999999999888888886654454443
No 126
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=57.95 E-value=57 Score=25.36 Aligned_cols=79 Identities=11% Similarity=-0.098 Sum_probs=43.1
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhH---HHhhhhC
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFV---DQCIKKA 131 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~---~~v~~~~ 131 (162)
+..+.++...+.....+.+-.-+...+. .-.+.+.+++.++|.+++......... ..++. +.+...+
T Consensus 55 Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~--------~~~i~~yf~~v~~~~ 126 (290)
T TIGR00683 55 EKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFS--------FPEIKHYYDTIIAET 126 (290)
T ss_pred HHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCC--------HHHHHHHHHHHHhhC
Confidence 3333444444443233444433332233 455668899999999999765322111 11121 3455656
Q ss_pred -CceEEEEecCCC
Q 031262 132 -DCLTVGVRKQSK 143 (162)
Q Consensus 132 -~~pVlvv~~~~~ 143 (162)
+.|+++...+..
T Consensus 127 ~~lpv~lYn~P~~ 139 (290)
T TIGR00683 127 GGLNMIVYSIPFL 139 (290)
T ss_pred CCCCEEEEeCccc
Confidence 699999877654
No 127
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=57.53 E-value=90 Score=24.33 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=50.2
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
++||.|-+.++.....++-.+.+. ...++++.++-. .... .. ..+++ .++.+...-..
T Consensus 84 ~~ki~vl~Sg~g~nl~~l~~~~~~-g~l~~~i~~vis--n~~~----------~~-------~~A~~--~gIp~~~~~~~ 141 (280)
T TIGR00655 84 LKRVAILVSKEDHCLGDLLWRWYS-GELDAEIALVIS--NHED----------LR-------SLVER--FGIPFHYIPAT 141 (280)
T ss_pred CcEEEEEEcCCChhHHHHHHHHHc-CCCCcEEEEEEE--cChh----------HH-------HHHHH--hCCCEEEcCCC
Confidence 467888888888888888887653 233455554433 2211 11 12444 45555432221
Q ss_pred -cC---chhHHHHHHHhcCCCEEEEccCC
Q 031262 82 -GP---KLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 82 -g~---~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
.+ ..+.+.+..+++++|++|+....
T Consensus 142 ~~~~~~~e~~~~~~l~~~~~Dlivlagym 170 (280)
T TIGR00655 142 KDNRVEHEKRQLELLKQYQVDLVVLAKYM 170 (280)
T ss_pred CcchhhhHHHHHHHHHHhCCCEEEEeCch
Confidence 11 24678888999999999998764
No 128
>PF15366 DUF4597: Domain of unknown function (DUF4597)
Probab=57.52 E-value=9.8 Score=21.97 Aligned_cols=30 Identities=17% Similarity=0.415 Sum_probs=23.4
Q ss_pred hhCCceEEEEecCCCCCCcEEEeceeeceeee
Q 031262 129 KKADCLTVGVRKQSKGMGGYIISTRWQKNFWL 160 (162)
Q Consensus 129 ~~~~~pVlvv~~~~~~~~~~~~~~~~~~~~~~ 160 (162)
++.++|=++|-++.. .|..+..-+-...||
T Consensus 18 KhLdVPnIIiTPPTP--Tg~~lpRDs~~~vwl 47 (62)
T PF15366_consen 18 KHLDVPNIIITPPTP--TGMMLPRDSRRTVWL 47 (62)
T ss_pred cccCCCceEecCCCC--CceecccccCcceec
Confidence 567889888887766 677888877788886
No 129
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=57.13 E-value=82 Score=23.72 Aligned_cols=90 Identities=16% Similarity=0.247 Sum_probs=53.9
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCC-CCccccchHHHHHHHHhHHHhCCCCeEEEEEEec
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSH-HDSSACCPYLANSLGSLCKACKPEVEVEALVIQG 82 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g 82 (162)
++++.+.+-++|..|+.+|.+. .....+++..+........ .+ . .+.++.+++. -++.....-..+
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~----~~v~~L~t~~~~~~~s~~~H~~------~-~~~~~~qA~a--lgipl~~~~~~~ 68 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE----HEVISLVNIMPENEESYMFHGV------N-AHLTDLQAES--IGIPLIKLYTEG 68 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh----CeeEEEEEEecCCCCccccccc------C-HHHHHHHHHH--cCCCeEEeecCC
Confidence 4678899999999999999876 2346677777654322111 11 0 1333444444 244432211222
Q ss_pred ---CchhHHHHHHHhcCCCEEEEccCC
Q 031262 83 ---PKLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 83 ---~~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
+-.+.+.+..++.+++.+|-|.--
T Consensus 69 ~~e~~~e~l~~~l~~~gv~~vv~GdI~ 95 (223)
T TIGR00290 69 TEEDEVEELKGILHTLDVEAVVFGAIY 95 (223)
T ss_pred CccHHHHHHHHHHHHcCCCEEEECCcc
Confidence 235667777777789999999863
No 130
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=56.49 E-value=44 Score=25.91 Aligned_cols=53 Identities=9% Similarity=-0.048 Sum_probs=33.6
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
.-...+++++.++|-+++-........ +-+ -..- +.|+..++.||++...+..
T Consensus 88 ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l-~~~f-----~~va~a~~lPv~iYn~P~~ 141 (293)
T PRK04147 88 AQELAKYATELGYDAISAVTPFYYPFSFEEI-CDYY-----REIIDSADNPMIVYNIPAL 141 (293)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCCHHHH-HHHH-----HHHHHhCCCCEEEEeCchh
Confidence 344557889999999999875432111 110 0111 5577788999999976544
No 131
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=56.48 E-value=98 Score=24.43 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=26.9
Q ss_pred HhcCCCEEEEccCCC---CcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 93 RKLEVSVLVLGQKKH---SAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 93 ~~~~~dliVmG~~~~---~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
+..++|.+++|+..- +.+-+. .|+.. + --+.++..+||+++-+
T Consensus 194 ~~~~vd~VlvGAd~v~~nG~v~nk-~GT~~---l-A~~Ak~~~vPv~V~a~ 239 (303)
T TIGR00524 194 QKGEIDAVIVGADRIARNGDVANK-IGTYQ---L-AVLAKEFRIPFFVAAP 239 (303)
T ss_pred cccCCCEEEEcccEEecCCCEeEh-hhHHH---H-HHHHHHhCCCEEEecc
Confidence 345799999999863 222221 23332 1 3456777999999855
No 132
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=56.20 E-value=54 Score=21.42 Aligned_cols=47 Identities=6% Similarity=0.017 Sum_probs=31.2
Q ss_pred HHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcc
Q 031262 61 SLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAF 110 (162)
Q Consensus 61 ~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~ 110 (162)
.+..+... .|.++ +.+...-+.+.+++.+.+.++|+|.++......+
T Consensus 18 ~~~~~l~~--~G~~V-~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~ 64 (119)
T cd02067 18 IVARALRD--AGFEV-IDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHM 64 (119)
T ss_pred HHHHHHHH--CCCEE-EECCCCCCHHHHHHHHHHcCCCEEEEeccccccH
Confidence 34445544 56555 2222334689999999999999999998743333
No 133
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=55.09 E-value=1.1e+02 Score=24.50 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=51.1
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe--
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ-- 81 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~-- 81 (162)
.++||+.|-.+|..++..+... .+.++.++|+-.... .+.-.+.++.+++. -+++..+....
T Consensus 61 D~iV~lSGGkDSs~la~ll~~~---~gl~~l~vt~~~~~~-----------~e~~~~n~~~~~~~--lgvd~~~i~~d~~ 124 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKKK---LGLNPLLVTVDPGWN-----------TELGVKNLNNLIKK--LGFDLHTITINPE 124 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHHH---hCCceEEEEECCCCC-----------CHHHHHHHHHHHHH--cCCCeEEEeCCHH
Confidence 4899999999998877655432 355566677753321 12222333444443 12222222211
Q ss_pred -------------cC--------chhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 -------------GP--------KLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 -------------g~--------~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
++ ....+.+.|.++++.+|+-|.+..
T Consensus 125 ~~~~l~~~~~~~~~~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~d 171 (343)
T TIGR03573 125 TFRKLQRAYFKKVGDPEWPQDHAIFASVYQVALKFNIPLIIWGENIA 171 (343)
T ss_pred HHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHHhCCCEEEeCCCHH
Confidence 11 245677889999999999998753
No 134
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=54.93 E-value=47 Score=26.83 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=37.4
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEE
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGV 138 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv 138 (162)
.+.|++.+++.++|++|.|--=...--..-.|.+. +.|-.+..+|++..
T Consensus 69 ~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~-----~aV~e~~~IP~vta 117 (349)
T PF07355_consen 69 LKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVA-----KAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHH-----HHHHHhhCCCEEEE
Confidence 67788999999999999997543333334456555 88999999999875
No 135
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=54.88 E-value=30 Score=23.78 Aligned_cols=54 Identities=13% Similarity=0.231 Sum_probs=37.0
Q ss_pred CchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCc-----chhHHHhhhhC-CceEEEEecCC
Q 031262 83 PKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSS-----EEFVDQCIKKA-DCLTVGVRKQS 142 (162)
Q Consensus 83 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~-----~~~~~~v~~~~-~~pVlvv~~~~ 142 (162)
...+.|.+.+++++++.+|+|-.-+. -|+.+. .++++.+.... ++||..+..+.
T Consensus 38 ~~~~~l~~li~~~~i~~iVvGlP~~~------~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~ 97 (135)
T PF03652_consen 38 KDIEELKKLIEEYQIDGIVVGLPLNM------DGSESEQARRVRKFAEELKKRFPGIPVILVDERL 97 (135)
T ss_dssp CCHHHHHHHHHHCCECEEEEEEEBBC------TSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSC
T ss_pred hHHHHHHHHHHHhCCCEEEEeCCccc------CCCccHHHHHHHHHHHHHHHhcCCCcEEEECCCh
Confidence 34899999999999999999985321 111110 12225666776 99999997753
No 136
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=54.76 E-value=91 Score=23.56 Aligned_cols=51 Identities=14% Similarity=0.196 Sum_probs=31.5
Q ss_pred cchHHHHHHHHhHHHh-CCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccC
Q 031262 54 CCPYLANSLGSLCKAC-KPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~-~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~ 105 (162)
-.....++++++.+.. ..+.++.+.+ +|-....-+..+.+-++|.+|+|+.
T Consensus 148 fi~~~l~KI~~lr~~~~~~~~~~~IeV-DGGI~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 148 FIPEMLDKIAELKALRERNGLEYLIEV-DGSCNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCeEEEE-ECCCCHHHHHHHHHcCCCEEEEChH
Confidence 3455555555544432 1455666666 6666544555666678999999974
No 137
>PHA02031 putative DnaG-like primase
Probab=53.46 E-value=26 Score=27.16 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=30.2
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEE
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHV 38 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv 38 (162)
.++|++++|++.....|...|++++...+..+.++..
T Consensus 206 ~~~Vil~fDgD~AG~~Aa~ra~~~l~~~~~~v~vv~l 242 (266)
T PHA02031 206 CPRVLIFLDGDPAGVDGSAGAMRRLRPLLIEGQVIIT 242 (266)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHHHHcCCceEEEEC
Confidence 3689999999999999999999988766666655554
No 138
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=53.31 E-value=1.1e+02 Score=24.00 Aligned_cols=82 Identities=10% Similarity=0.157 Sum_probs=48.8
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe-
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ- 81 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~- 81 (162)
+||.|-+.++.....++-++.+.- ..++++.++-. +.+ . +.+.+++ .++.+...-..
T Consensus 94 ~kiavl~Sg~g~nl~al~~~~~~~-~l~~~i~~vis--n~~-------------~----~~~~A~~--~gIp~~~~~~~~ 151 (289)
T PRK13010 94 PKVVIMVSKFDHCLNDLLYRWRMG-ELDMDIVGIIS--NHP-------------D----LQPLAVQ--HDIPFHHLPVTP 151 (289)
T ss_pred eEEEEEEeCCCccHHHHHHHHHCC-CCCcEEEEEEE--CCh-------------h----HHHHHHH--cCCCEEEeCCCc
Confidence 467777777777777777776532 33445444432 221 1 1244555 45555432111
Q ss_pred c---CchhHHHHHHHhcCCCEEEEccCC
Q 031262 82 G---PKLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 82 g---~~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
. +....+.+..+++++|++|+....
T Consensus 152 ~~~~~~~~~~~~~l~~~~~Dlivlagym 179 (289)
T PRK13010 152 DTKAQQEAQILDLIETSGAELVVLARYM 179 (289)
T ss_pred ccccchHHHHHHHHHHhCCCEEEEehhh
Confidence 1 225678899999999999998764
No 139
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=53.31 E-value=1.2e+02 Score=24.60 Aligned_cols=37 Identities=8% Similarity=0.102 Sum_probs=23.2
Q ss_pred CCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCC
Q 031262 72 EVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 72 ~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
+.++-+.....+....+++.+++.+.+.+.+|+.+..
T Consensus 234 ~a~vVvv~~~~~~~~~l~~~a~~~g~~~~wigs~~w~ 270 (403)
T cd06361 234 KVNVIVVFARQFHVFLLFNKAIERNINKVWIASDNWS 270 (403)
T ss_pred CCeEEEEEeChHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 4333333333334677778888888888888877643
No 140
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=53.02 E-value=45 Score=26.39 Aligned_cols=49 Identities=8% Similarity=0.202 Sum_probs=34.3
Q ss_pred chhHHHHHHHhcCCCEEEEccCCC-Ccc-cccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 84 KLGTVMSQVRKLEVSVLVLGQKKH-SAF-INCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 84 ~~~~I~~~a~~~~~dliVmG~~~~-~~~-~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
+....++.++ ++|+||+|-... +++ ..+.+. .| ..-+++++.||+.|.+
T Consensus 173 ~~p~vl~AI~--~AD~IVlGPgsp~TSI~P~LlVp-----gI-~eAL~~s~A~vV~Vsp 223 (303)
T cd07186 173 PAPEVLEAIE--DADLVIIGPSNPVTSIGPILALP-----GI-REALRDKKAPVVAVSP 223 (303)
T ss_pred CCHHHHHHHH--hCCEEEECCCccHHHhhhhccch-----hH-HHHHHhCCCCEEEEcC
Confidence 4788888888 679999998653 323 223222 33 5567889999999976
No 141
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=52.24 E-value=27 Score=27.66 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=34.6
Q ss_pred chhHHHHHHHhcCCCEEEEccCCC-Cc-ccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 84 KLGTVMSQVRKLEVSVLVLGQKKH-SA-FINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 84 ~~~~I~~~a~~~~~dliVmG~~~~-~~-~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
+....++.++ ++|+||+|--.. ++ +..++.. .| ...+++++||++.|.+-
T Consensus 164 ~~~~~l~AI~--~ADlIvlgPGSlyTSI~P~Llv~-----gi-~eAi~~s~a~kV~V~ni 215 (309)
T cd07044 164 PSREVLEAIE--KADNIVIGPGSLYTSILPNISVP-----GI-REALKKTXAKKVYVSNI 215 (309)
T ss_pred CCHHHHHHHH--hCCEEEECCCcCHHHhhhhcCcH-----hH-HHHHHhcCCCeEEECCC
Confidence 3778888888 679999998653 22 2333333 33 45667799999999875
No 142
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=51.65 E-value=74 Score=23.13 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=29.4
Q ss_pred hhHHHHHHHhcCCC-EEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 85 LGTVMSQVRKLEVS-VLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 85 ~~~I~~~a~~~~~d-liVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
.+.+.+.+++...+ .+++|+.- |++- + .++..+-.||.+++.|.
T Consensus 46 ~~~l~~~i~~~~~~~~~liGSSl-GG~~-------A-----~~La~~~~~~avLiNPa 90 (187)
T PF05728_consen 46 IAQLEQLIEELKPENVVLIGSSL-GGFY-------A-----TYLAERYGLPAVLINPA 90 (187)
T ss_pred HHHHHHHHHhCCCCCeEEEEECh-HHHH-------H-----HHHHHHhCCCEEEEcCC
Confidence 35556667766654 88888863 2121 3 67777888998888774
No 143
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=51.35 E-value=19 Score=25.05 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=38.4
Q ss_pred CeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 73 VEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 73 v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
.+.--.++.|.+++.=.+..+++++|.+++|--....... . .+-+.+....+-+.|-..
T Consensus 63 ~ryVD~vi~~~p~~~~~~~i~~~k~Div~lG~D~~~d~~~------l-----~~~~~k~G~~~~v~R~~g 121 (140)
T COG0615 63 LRYVDEVILGAPWDIKFEDIEEYKPDIVVLGDDQKFDEDD------L-----KYELVKRGLFVEVKRTEG 121 (140)
T ss_pred CcchheeeeCCccccChHHHHHhCCCEEEECCCCcCChHH------H-----HHHHHHcCCeeEEEeccC
Confidence 3344455678888876889999999999999976532211 1 333444666666665543
No 144
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=51.29 E-value=25 Score=23.17 Aligned_cols=43 Identities=12% Similarity=0.143 Sum_probs=30.1
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhC-CceEEEEecC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKA-DCLTVGVRKQ 141 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~-~~pVlvv~~~ 141 (162)
.....+.|++.++..||+=+.. |.++ ..+.+.- .||++++-+.
T Consensus 5 a~aa~~~A~~~~ak~Ivv~T~s---------G~ta-----~~isk~RP~~pIiavt~~ 48 (117)
T PF02887_consen 5 ARAAVELAEDLNAKAIVVFTES---------GRTA-----RLISKYRPKVPIIAVTPN 48 (117)
T ss_dssp HHHHHHHHHHHTESEEEEE-SS---------SHHH-----HHHHHT-TSSEEEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEECCC---------chHH-----HHHHhhCCCCeEEEEcCc
Confidence 4567788899999888887763 4445 6666653 6999999764
No 145
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=50.87 E-value=1.1e+02 Score=23.16 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=30.6
Q ss_pred hhHHHHHHH---hcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 85 LGTVMSQVR---KLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 85 ~~~I~~~a~---~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
.+.+.+.++ +.++|+|||-.=|.+.-.+ +.+.+.+++||++-+
T Consensus 164 ~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r------------~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 164 EEELAAAARELAEQGADLIVLDCMGYTQEMR------------DIVQRALGKPVLLSR 209 (221)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCHHHH------------HHHHHHhCCCEEeHH
Confidence 455555554 5679999999988764433 556677899999854
No 146
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=50.86 E-value=88 Score=24.29 Aligned_cols=46 Identities=20% Similarity=0.071 Sum_probs=28.8
Q ss_pred hHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCCC
Q 031262 86 GTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSKG 144 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~~ 144 (162)
+.+.+...+.++|. |+|....+ +.++ ..+.....+|++++|+..+.
T Consensus 118 ~~la~~~~~~~iD~-VvgvetkG----IpLA--------~avA~~L~vp~vivRK~~K~ 163 (268)
T TIGR01743 118 KILASVFAEREIDA-VMTVATKG----IPLA--------YAVASVLNVPLVIVRKDSKV 163 (268)
T ss_pred HHHHHHhcCCCCCE-EEEEccch----HHHH--------HHHHHHHCCCEEEEEECCCC
Confidence 34444444557885 45554333 2233 45677789999999998764
No 147
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=50.72 E-value=1e+02 Score=24.45 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=40.2
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCc----hhHHHHHHHhcCCCEEE-EccCCCCcccccccccCCcchhHHHhhhhC
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPK----LGTVMSQVRKLEVSVLV-LGQKKHSAFINCFCGTSSSEEFVDQCIKKA 131 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~----~~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~ 131 (162)
...+.+++.... .+ .+...+ .+++ .+.+.+.+++.++|.|| +|.- |+. ++++.+.-..
T Consensus 39 ~~~~~v~~~l~~--~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~~d~iIaiGGG-----------s~~--D~aK~~a~~~ 101 (339)
T cd08173 39 IAGKKVEALLED--EG-EVDVVI-VEDATYEEVEKVESSARDIGADFVIGVGGG-----------RVI--DVAKVAAYKL 101 (339)
T ss_pred HHHHHHHHHHHh--cC-CeEEEE-eCCCCHHHHHHHHHHhhhcCCCEEEEeCCc-----------hHH--HHHHHHHHhc
Confidence 344555555554 33 444333 3343 56677778888999887 6642 222 2335565556
Q ss_pred CceEEEEecC
Q 031262 132 DCLTVGVRKQ 141 (162)
Q Consensus 132 ~~pVlvv~~~ 141 (162)
.+|++.||-.
T Consensus 102 ~~p~i~iPTT 111 (339)
T cd08173 102 GIPFISVPTA 111 (339)
T ss_pred CCCEEEecCc
Confidence 7899999764
No 148
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=50.40 E-value=80 Score=26.37 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=49.8
Q ss_pred CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhC-CCCeEEEEEE-ecCchhH
Q 031262 10 DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACK-PEVEVEALVI-QGPKLGT 87 (162)
Q Consensus 10 D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~v~-~g~~~~~ 87 (162)
|..-....||..|++ .+ ++..|.|.++..... .........=+.+.++++.+++. .| ....+. .|++.+.
T Consensus 7 DLRl~DN~aL~~A~~----~~-~vlpvyi~dp~~~~~-~~~~~~~~~fl~~sL~~L~~~L~~~G--~~L~v~~~g~~~~~ 78 (475)
T TIGR02766 7 DLRVEDNPALAAAAR----AG-PVIPVFVWAPEEEGQ-YYPGRVSRWWLKQSLAHLDQSLRSLG--TCLVTIRSTDTVAA 78 (475)
T ss_pred CCCcchHHHHHHHHh----CC-CEEEEEEechHHhcc-ccccHHHHHHHHHHHHHHHHHHHHcC--CceEEEeCCCHHHH
Confidence 344445567776763 22 688888887642211 11111111123345555544432 34 333333 4788999
Q ss_pred HHHHHHhcCCCEEEEccC
Q 031262 88 VMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 88 I~~~a~~~~~dliVmG~~ 105 (162)
|.+.+++.+++-|..-..
T Consensus 79 l~~l~~~~~i~~v~~~~~ 96 (475)
T TIGR02766 79 LLDCVRSTGATRLFFNHL 96 (475)
T ss_pred HHHHHHHcCCCEEEEecc
Confidence 999999999998876665
No 149
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=50.39 E-value=38 Score=25.67 Aligned_cols=67 Identities=7% Similarity=0.205 Sum_probs=39.6
Q ss_pred hhHHHHHHHhcCCCEEEEccCC-CCcccccccccCCcchhHHHhhhhCCceEEEEecCCC----CCCcEEEec--eeece
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKK-HSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK----GMGGYIIST--RWQKN 157 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~-~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~----~~~~~~~~~--~~~~~ 157 (162)
.+..++.+.+.+.|.|++|.+. ...+. +++..+-+..+.||++.+.... .-..+++.+ ++-+.
T Consensus 21 ~~~~~~~~~~~gtDai~VGGS~~~~~~d----------~vv~~ik~~~~lPvilfPg~~~~vs~~aDail~~svlNs~n~ 90 (230)
T PF01884_consen 21 PEEALEAACESGTDAIIVGGSDTGVTLD----------NVVALIKRVTDLPVILFPGSPSQVSPGADAILFPSVLNSRNP 90 (230)
T ss_dssp HHHHHHHHHCTT-SEEEEE-STHCHHHH----------HHHHHHHHHSSS-EEEETSTCCG--TTSSEEEEEEETTBSST
T ss_pred cHHHHHHHHhcCCCEEEECCCCCccchH----------HHHHHHHhcCCCCEEEeCCChhhcCcCCCEEEEEEEecCCCc
Confidence 5667777788899999999986 22222 2225566668999999976422 123455543 45555
Q ss_pred eeec
Q 031262 158 FWLL 161 (162)
Q Consensus 158 ~~~~ 161 (162)
+|++
T Consensus 91 ~~ii 94 (230)
T PF01884_consen 91 YWII 94 (230)
T ss_dssp TTTT
T ss_pred chHh
Confidence 6653
No 150
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=50.19 E-value=82 Score=24.06 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=38.2
Q ss_pred EecCchhH-HHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCCCCCc
Q 031262 80 IQGPKLGT-VMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSKGMGG 147 (162)
Q Consensus 80 ~~g~~~~~-I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~~~~~ 147 (162)
..|.-... =....+++++|.||.=..|..++.. + -...+...+||++++++....+.
T Consensus 177 ~~GPfs~e~n~al~~~~~i~~lVtK~SG~~g~~e---------K--i~AA~~lgi~vivI~RP~~~~~~ 234 (249)
T PF02571_consen 177 MQGPFSKELNRALFRQYGIDVLVTKESGGSGFDE---------K--IEAARELGIPVIVIKRPPEPYGD 234 (249)
T ss_pred EeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHH---------H--HHHHHHcCCeEEEEeCCCCCCCC
Confidence 34444333 3456789999999998877543322 2 24577789999999988765443
No 151
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=50.03 E-value=98 Score=22.55 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=52.2
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecC
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGP 83 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~ 83 (162)
|+++++.+-.+|.-++.++.+. |.++..++...+...... .. +.. -.+.++.+++. -+++....-..++
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~----G~~v~~l~~~~~~~~~~~-~~---h~~-~~e~~~~~A~~--lgipl~~i~~~~~ 69 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE----GHEVVALLNLTPEEGSSM-MY---HTV-NHELLELQAEA--MGIPLIRIEISGE 69 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc----CCEEEEEEEEecCCCCcc-cc---ccc-CHHHHHHHHHH--cCCcEEEEeCCCC
Confidence 5789999999999999998873 566776666543321100 00 011 22455566666 3555443322222
Q ss_pred ---c----hhHHHHHHHhcCCCEEEEccCC
Q 031262 84 ---K----LGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 84 ---~----~~~I~~~a~~~~~dliVmG~~~ 106 (162)
- .+.+.+..++ +++.||-|+..
T Consensus 70 ~e~~~~~l~~~l~~~~~~-g~~~vv~G~i~ 98 (194)
T cd01994 70 EEDEVEDLKELLRKLKEE-GVDAVVFGAIL 98 (194)
T ss_pred chHHHHHHHHHHHHHHHc-CCCEEEECccc
Confidence 1 3334444444 69999999975
No 152
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=49.70 E-value=51 Score=21.66 Aligned_cols=66 Identities=8% Similarity=0.081 Sum_probs=40.9
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEE
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVG 137 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlv 137 (162)
+...+++.++. .+.++.+.-.. ...+-++.. ++|++++|-.-+ +.++. . +.+.....+||-+
T Consensus 17 LV~Km~~aA~~--kg~~~~I~A~s---~~e~~~~~~--~~DvvLlGPQv~-----y~~~~-~-----~~~~~~~giPV~v 78 (102)
T COG1440 17 LVTKMKKAAES--KGKDVTIEAYS---ETELSEYID--NADVVLLGPQVR-----YMLKQ-L-----KEAAEEKGIPVEV 78 (102)
T ss_pred HHHHHHHHHHh--CCCceEEEEec---hhHHHHhhh--cCCEEEEChHHH-----HHHHH-H-----HHHhcccCCCeEE
Confidence 33556666666 56556544432 234444455 789999998642 22222 2 6677777899999
Q ss_pred EecC
Q 031262 138 VRKQ 141 (162)
Q Consensus 138 v~~~ 141 (162)
+++.
T Consensus 79 I~~~ 82 (102)
T COG1440 79 IDML 82 (102)
T ss_pred eCHH
Confidence 9874
No 153
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=49.50 E-value=37 Score=26.95 Aligned_cols=50 Identities=16% Similarity=0.297 Sum_probs=34.5
Q ss_pred chhHHHHHHHhcCCCEEEEccCCC-Cc-ccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 84 KLGTVMSQVRKLEVSVLVLGQKKH-SA-FINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 84 ~~~~I~~~a~~~~~dliVmG~~~~-~~-~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
+....++.++ ++|+||+|--.. +. +..+++.. | ...+++++||++.|.+-
T Consensus 162 a~~~al~AI~--~ADlIvlgPGSlyTSIiPnLlv~g-----I-~eAI~~s~a~kV~v~N~ 213 (310)
T TIGR01826 162 ALREAVEAIR--EADLIILGPGSLYTSIIPNLLVPE-----I-AEALRESKAPKVYVCNL 213 (310)
T ss_pred CCHHHHHHHH--hCCEEEECCCcCHHHhchhcCchh-----H-HHHHHhCCCCEEEEeCC
Confidence 3678888888 779999998653 22 23343333 3 34567789999999875
No 154
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=49.40 E-value=45 Score=25.07 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=29.4
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEE
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLH 37 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~h 37 (162)
++|.+|+|+++....|...+.+++...|-.+.++.
T Consensus 155 ~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv~ 189 (218)
T TIGR00646 155 EKIFICFDNDFAGKNAAANLEEILKKAGFITKVIE 189 (218)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 57999999999999999999999877776665543
No 155
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=49.31 E-value=52 Score=19.65 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=21.0
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCE
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDL 32 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~ 32 (162)
++|.++.|.++....+...+.+.+...+..
T Consensus 44 ~~vii~~D~D~~G~~~~~~~~~~~~~~~~~ 73 (79)
T cd01029 44 RTVILAFDNDEAGKKAAARALELLLALGGR 73 (79)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCE
Confidence 678888998888877776666655544433
No 156
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=49.23 E-value=24 Score=29.29 Aligned_cols=38 Identities=8% Similarity=0.367 Sum_probs=27.7
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhh
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIK 129 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~ 129 (162)
...+.++|++.++-++++|+-... |..++++++++++.
T Consensus 199 t~~L~~~AK~~~i~~fiVGHVTKe-------G~IAGPrvLEHmVD 236 (456)
T COG1066 199 AAELMRLAKTKNIAIFIVGHVTKE-------GAIAGPRVLEHMVD 236 (456)
T ss_pred HHHHHHHHHHcCCeEEEEEEEccc-------ccccCchheeeeee
Confidence 578999999999999999997543 45566444444443
No 157
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=48.46 E-value=98 Score=22.07 Aligned_cols=93 Identities=23% Similarity=0.220 Sum_probs=56.3
Q ss_pred CCcEEEEEeCCChhh---HHHHHHHHHhccCCCCEEEEEEEeCCCC-CCCCCCCccccchHHHHHHHHhHHHhCCCCeEE
Q 031262 1 MRKRVMVVVDQTSHS---KHAMMWALTHVTNKGDLLTLLHVVPPPK-PNTSHHDSSACCPYLANSLGSLCKACKPEVEVE 76 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s---~~al~~A~~~a~~~~~~l~l~hv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 76 (162)
||++-++|-.+++-. ...++.|.+++ +++++.=...+.. +.. ..++-.+.+++.... .+++++.
T Consensus 1 ~~~iavypGSFDPiTnGHlDii~RA~~~F----d~viVaV~~np~K~plF-------sleER~~l~~~~~~~-l~nV~V~ 68 (159)
T COG0669 1 MMKIAVYPGSFDPITNGHLDIIKRASALF----DEVIVAVAINPSKKPLF-------SLEERVELIREATKH-LPNVEVV 68 (159)
T ss_pred CCeeEEeCCCCCCCccchHHHHHHHHHhc----cEEEEEEEeCCCcCCCc-------CHHHHHHHHHHHhcC-CCceEEE
Confidence 678888888887743 56777777766 4444433333322 210 223334444444333 2565432
Q ss_pred EEEEecCchhHHHHHHHhcCCCEEEEccCCCCccc
Q 031262 77 ALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFI 111 (162)
Q Consensus 77 ~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~ 111 (162)
.. + .-++++|+++++..||=|-+.-+.++
T Consensus 69 ~f--~----~Llvd~ak~~~a~~ivRGLR~~sDfe 97 (159)
T COG0669 69 GF--S----GLLVDYAKKLGATVLVRGLRAVSDFE 97 (159)
T ss_pred ec--c----cHHHHHHHHcCCCEEEEeccccchHH
Confidence 22 1 38899999999999999998776664
No 158
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=48.21 E-value=40 Score=23.48 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=38.1
Q ss_pred chhHHHHHHHhcCCCEEEEccCCCCcccccccccCC--cchhHHHhhhhCCceEEEEecC
Q 031262 84 KLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSS--SEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 84 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~--~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
..+.|.+.+++++++.||+|-.-.-.-. .|+.+ ..++++.+-++.++||..+..+
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~---~~~~~~~~~~f~~~L~~r~~lpv~l~DER 97 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGT---EGPRAELARKFAERLKKRFNLPVVLWDER 97 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCC---cchhHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 4789999999999999999986421100 11111 2344477778888999998775
No 159
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=48.06 E-value=1.1e+02 Score=23.09 Aligned_cols=74 Identities=9% Similarity=0.035 Sum_probs=43.4
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..++.+.+++.+++ .|..+......+++ ....++.....++|-++++......... . -..+...+
T Consensus 41 ~~~~~~~i~~~~~~--~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~------~-----l~~~~~~~ 107 (295)
T PRK10653 41 FVSLKDGAQKEADK--LGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGN------A-----VKMANQAN 107 (295)
T ss_pred HHHHHHHHHHHHHH--cCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHH------H-----HHHHHHCC
Confidence 46666777777777 46555443333344 3455556667789988877643221111 1 23456678
Q ss_pred ceEEEEecC
Q 031262 133 CLTVGVRKQ 141 (162)
Q Consensus 133 ~pVlvv~~~ 141 (162)
+|++.+...
T Consensus 108 ipvV~~~~~ 116 (295)
T PRK10653 108 IPVITLDRG 116 (295)
T ss_pred CCEEEEccC
Confidence 999998654
No 160
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=48.00 E-value=1.3e+02 Score=23.24 Aligned_cols=80 Identities=6% Similarity=-0.071 Sum_probs=42.8
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCce
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADCL 134 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~p 134 (162)
..+.++...+.....+.+-.-+...+. .-.+.+++++.++|-+++......... +-+. ..- ..+...++.|
T Consensus 53 r~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~-~~~-----~~i~~~~~~p 126 (285)
T TIGR00674 53 HKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLY-QHF-----KAIAEEVDLP 126 (285)
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHH-HHH-----HHHHhcCCCC
Confidence 333344444433333444333322223 344568888999999999875432211 1110 111 4567778899
Q ss_pred EEEEecCCC
Q 031262 135 TVGVRKQSK 143 (162)
Q Consensus 135 Vlvv~~~~~ 143 (162)
|++...+..
T Consensus 127 i~lYn~P~~ 135 (285)
T TIGR00674 127 IILYNVPSR 135 (285)
T ss_pred EEEEECcHH
Confidence 998876543
No 161
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=47.88 E-value=1.7e+02 Score=24.65 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=28.0
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeC
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVP 40 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~ 40 (162)
.++++.+.|-.+|--|+-|+.+. |.++..+|+..
T Consensus 178 gk~lvllSGGiDS~va~~~~~kr----G~~v~~l~f~~ 211 (482)
T PRK01269 178 EDVLSLISGGFDSGVASYMLMRR----GSRVHYCFFNL 211 (482)
T ss_pred CeEEEEEcCCchHHHHHHHHHHc----CCEEEEEEEec
Confidence 57899999999999888777654 77899999863
No 162
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=47.54 E-value=1.4e+02 Score=23.69 Aligned_cols=71 Identities=13% Similarity=0.122 Sum_probs=41.2
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCc----hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPK----LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~----~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
...+.+.+..+. .++.+......+++ .+.+.+.+++.++|.|| |--| ||+. ++++.+.-...
T Consensus 36 ~~~~~v~~~L~~--~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~II-avGG---------GS~i--D~aK~ia~~~~ 101 (351)
T cd08170 36 LVGAKIEESLAA--AGIDARFEVFGGECTRAEIERLAEIARDNGADVVI-GIGG---------GKTL--DTAKAVADYLG 101 (351)
T ss_pred HHHHHHHHHHHh--CCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEE-EecC---------chhh--HHHHHHHHHcC
Confidence 444555555544 45665544445665 45666777888999765 3323 2332 23355555557
Q ss_pred ceEEEEecC
Q 031262 133 CLTVGVRKQ 141 (162)
Q Consensus 133 ~pVlvv~~~ 141 (162)
.|++.|+-.
T Consensus 102 ~P~iaIPTT 110 (351)
T cd08170 102 APVVIVPTI 110 (351)
T ss_pred CCEEEeCCc
Confidence 899999864
No 163
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=47.54 E-value=1.1e+02 Score=22.39 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=48.0
Q ss_pred EeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe-----c
Q 031262 8 VVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ-----G 82 (162)
Q Consensus 8 ~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~-----g 82 (162)
+.-.++.+..++..+..+++..+.++.++.+-+.. ..+..++. .. .+.+--..+.. .
T Consensus 30 ~~vi~e~~~~~l~ea~~la~~~g~~v~av~~G~~~---------------~~~~~~~l-~~--~G~d~V~~~~~~~~~~~ 91 (202)
T cd01714 30 PLIINPYDEYAVEEALRLKEKYGGEVTVVSMGPPQ---------------AEEALREA-LA--MGADRAILVSDRAFAGA 91 (202)
T ss_pred CccCChHhHHHHHHHHHhhhhcCCEEEEEEECCHH---------------HHHHHHHH-HH--cCCCEEEEEecccccCC
Confidence 44456778899999999877766777666543210 11112222 22 23322222211 1
Q ss_pred Cc---hhHHHHHHHhcCCCEEEEccCCC
Q 031262 83 PK---LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 83 ~~---~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
++ .+.|.+.+++.++|+|++|++..
T Consensus 92 ~~e~~a~al~~~i~~~~p~lVL~~~t~~ 119 (202)
T cd01714 92 DTLATAKALAAAIKKIGVDLILTGKQSI 119 (202)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEEcCCcc
Confidence 12 56788888888899999998764
No 164
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=47.42 E-value=1.3e+02 Score=23.61 Aligned_cols=81 Identities=6% Similarity=-0.087 Sum_probs=44.5
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhC-C
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKA-D 132 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~-~ 132 (162)
+..+.++...+.....+.+-.-+...+. .-...+.|++.++|-+++-........ .-+. ..- +.|...+ +
T Consensus 62 Er~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~-~yf-----~~va~a~~~ 135 (309)
T cd00952 62 EKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAV-QFY-----RDVAEAVPE 135 (309)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHH-HHH-----HHHHHhCCC
Confidence 3333344444333334555444433333 555668899999998888875322111 1111 111 4567778 5
Q ss_pred ceEEEEecCCC
Q 031262 133 CLTVGVRKQSK 143 (162)
Q Consensus 133 ~pVlvv~~~~~ 143 (162)
+||++...+..
T Consensus 136 lPv~iYn~P~~ 146 (309)
T cd00952 136 MAIAIYANPEA 146 (309)
T ss_pred CcEEEEcCchh
Confidence 99999876644
No 165
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=47.33 E-value=1.4e+02 Score=23.40 Aligned_cols=86 Identities=10% Similarity=0.033 Sum_probs=52.2
Q ss_pred ChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCC-CCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHH
Q 031262 12 TSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKP-NTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMS 90 (162)
Q Consensus 12 S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~ 90 (162)
|=.|..-+..+.+..+..|+++.-.-++.+-+. +...+ ..++-+..+++.++. .|..+.+.+..-+..+.+.+
T Consensus 54 svEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQG----lge~gL~~l~~a~~~--~Gl~vvtEvm~~~~~e~~~~ 127 (286)
T COG2876 54 SVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQG----LGEEGLKLLKRAADE--TGLPVVTEVMDVRDVEAAAE 127 (286)
T ss_pred ccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccc----cCHHHHHHHHHHHHH--cCCeeEEEecCHHHHHHHHh
Confidence 444555555555566677877766666644433 22222 234556667777777 57778777765554555555
Q ss_pred HHHhcCCCEEEEccCCCC
Q 031262 91 QVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 91 ~a~~~~~dliVmG~~~~~ 108 (162)
| +|+|=+|++-..
T Consensus 128 y-----~DilqvGARNMQ 140 (286)
T COG2876 128 Y-----ADILQVGARNMQ 140 (286)
T ss_pred h-----hhHHHhcccchh
Confidence 4 688888987543
No 166
>PLN02828 formyltetrahydrofolate deformylase
Probab=46.82 E-value=1.4e+02 Score=23.25 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=51.4
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
++||+|-+.++.....++-++.+.- ..++++.++-...+.... ..+++.+++ .++.+...-..
T Consensus 70 ~~riavlvSg~g~nl~~ll~~~~~g-~l~~eI~~ViSn~~~~~~--------------a~~~~~A~~--~gIP~~~~~~~ 132 (268)
T PLN02828 70 KYKIAVLASKQDHCLIDLLHRWQDG-RLPVDITCVISNHERGPN--------------THVMRFLER--HGIPYHYLPTT 132 (268)
T ss_pred CcEEEEEEcCCChhHHHHHHhhhcC-CCCceEEEEEeCCCCCCC--------------chHHHHHHH--cCCCEEEeCCC
Confidence 4689999999999999999887643 345666555443221110 133444555 46665533222
Q ss_pred -cC-chhHHHHHHHhcCCCEEEEccCC
Q 031262 82 -GP-KLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 82 -g~-~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
.+ ..+.+.+..+ ++|++|+....
T Consensus 133 ~~~~~e~~~~~~l~--~~DliVLAgym 157 (268)
T PLN02828 133 KENKREDEILELVK--GTDFLVLARYM 157 (268)
T ss_pred CCCCHHHHHHHHHh--cCCEEEEeeeh
Confidence 12 2346666666 59999998764
No 167
>PRK08185 hypothetical protein; Provisional
Probab=46.81 E-value=21 Score=27.90 Aligned_cols=55 Identities=9% Similarity=-0.030 Sum_probs=39.6
Q ss_pred ecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 81 QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 81 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
.-.-..++++.|++.+.-+|+..+.+.......-+.... ..+++++++||.+==.
T Consensus 22 n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~-----~~~a~~~~vPV~lHLD 76 (283)
T PRK08185 22 DSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYV-----RERAKRSPVPFVIHLD 76 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHH-----HHHHHHCCCCEEEECC
Confidence 344589999999999999999988875432222244444 7888899999877433
No 168
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.69 E-value=1.2e+02 Score=22.40 Aligned_cols=74 Identities=16% Similarity=0.097 Sum_probs=40.3
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..++.+.+++.+.+ .+.++.+....+++ ....++.+...++|-+++........... - +. ++..+
T Consensus 14 ~~~~~~~i~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~-----~-----~~-~~~~~ 80 (267)
T cd06322 14 YIELANAMKEEAKK--QKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAA-----I-----AK-AKKAG 80 (267)
T ss_pred HHHHHHHHHHHHHh--cCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHH-----H-----HH-HHHCC
Confidence 35566666666666 45555443333343 33455555667889888854322211111 0 22 45568
Q ss_pred ceEEEEecC
Q 031262 133 CLTVGVRKQ 141 (162)
Q Consensus 133 ~pVlvv~~~ 141 (162)
+||+.+...
T Consensus 81 ipvV~~~~~ 89 (267)
T cd06322 81 IPVITVDIA 89 (267)
T ss_pred CCEEEEccc
Confidence 898888653
No 169
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=46.43 E-value=1.4e+02 Score=23.12 Aligned_cols=77 Identities=8% Similarity=-0.072 Sum_probs=42.9
Q ss_pred HHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCceEEE
Q 031262 61 SLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADCLTVG 137 (162)
Q Consensus 61 ~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~pVlv 137 (162)
.++...+.....+.+-.-+...+. .-...+.+++.++|-+++......... +-+. ..- +.++..++.||++
T Consensus 59 ~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~-~~~-----~~ia~~~~~pv~l 132 (292)
T PRK03170 59 LIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLY-QHF-----KAIAEATDLPIIL 132 (292)
T ss_pred HHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHH-HHH-----HHHHhcCCCCEEE
Confidence 334444433234444444433333 445558889999999999765432211 1111 111 5577778999999
Q ss_pred EecCCC
Q 031262 138 VRKQSK 143 (162)
Q Consensus 138 v~~~~~ 143 (162)
...+..
T Consensus 133 Yn~P~~ 138 (292)
T PRK03170 133 YNVPGR 138 (292)
T ss_pred EECccc
Confidence 876543
No 170
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=46.43 E-value=1e+02 Score=24.88 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=25.9
Q ss_pred HHHHHHhHHHhCCCCeEEEE-EEecCc----hhHHHHHHHhcCCCEEE-Ecc
Q 031262 59 ANSLGSLCKACKPEVEVEAL-VIQGPK----LGTVMSQVRKLEVSVLV-LGQ 104 (162)
Q Consensus 59 ~~~~~~~~~~~~~~v~~~~~-v~~g~~----~~~I~~~a~~~~~dliV-mG~ 104 (162)
.+.+.+...+ .++++... -..++| .+.+.+.+++.++|.|| +|.
T Consensus 40 ~~~v~~~L~~--~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 89 (375)
T cd08194 40 VDKLTDSLKK--EGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG 89 (375)
T ss_pred HHHHHHHHHH--CCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3445444444 45555432 124454 45677778889999988 665
No 171
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=46.39 E-value=1.3e+02 Score=22.79 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=53.8
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEE-EEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEec
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLL-TLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQG 82 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l-~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g 82 (162)
++++-+.+-++|..|+-+|++. |-++ .++++.+......++... -.+...-+++. -++.+......|
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~----G~eV~~Ll~~~p~~~dS~m~H~~------n~~~~~~~Ae~--~gi~l~~~~~~g 69 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEE----GHEVVYLLTVKPENGDSYMFHTP------NLELAELQAEA--MGIPLVTFDTSG 69 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHc----CCeeEEEEEEecCCCCeeeeecc------chHHHHHHHHh--cCCceEEEecCc
Confidence 4567778999999999988864 4554 466666554433222210 11122222232 345554444444
Q ss_pred ---CchhHHHHHHHhcCCCEEEEccC
Q 031262 83 ---PKLGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 83 ---~~~~~I~~~a~~~~~dliVmG~~ 105 (162)
+-.+.+.+..+..++|-||.|+-
T Consensus 70 ~~e~eve~L~~~l~~l~~d~iv~GaI 95 (223)
T COG2102 70 EEEREVEELKEALRRLKVDGIVAGAI 95 (223)
T ss_pred cchhhHHHHHHHHHhCcccEEEEchh
Confidence 23677888888888999999985
No 172
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=46.13 E-value=1.3e+02 Score=22.98 Aligned_cols=53 Identities=4% Similarity=-0.083 Sum_probs=33.8
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
.-...+.|++.++|-+++......... +-++ ..- +.++..+++|+++...+..
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~-~~~-----~~ia~~~~~pi~lYn~P~~ 137 (284)
T cd00950 84 AIELTKRAEKAGADAALVVTPYYNKPSQEGLY-AHF-----KAIAEATDLPVILYNVPGR 137 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcccccCCCCHHHHH-HHH-----HHHHhcCCCCEEEEEChhH
Confidence 455568889999999998876432211 1111 112 5577778999999876543
No 173
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=45.70 E-value=1.2e+02 Score=24.07 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=44.1
Q ss_pred CCcEEEEEeC-CChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEE
Q 031262 1 MRKRVMVVVD-QTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALV 79 (162)
Q Consensus 1 m~~~Ilv~vD-~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v 79 (162)
|||.|.+++. ++..+.++|-. .+-++..|...++.... .+ .+-....++.++.+ .++.+-
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~-------~~~eivaV~Tqpdkp~g--R~-----~~l~~spVk~~A~~--~~ipv~--- 61 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIE-------AGHEIVAVVTQPDKPAG--RG-----KKLTPSPVKRLALE--LGIPVF--- 61 (307)
T ss_pred CcEEEEEcCchhhHHHHHHHHh-------CCCceEEEEeCCCCccC--CC-----CcCCCChHHHHHHH--cCCcee---
Confidence 6777888774 56555554432 23444444444332111 11 01111234555555 344321
Q ss_pred EecCc-hhHHHHHHHhcCCCEEEEccCCC
Q 031262 80 IQGPK-LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 80 ~~g~~-~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
...+. .+++.+..++.++|++|+-+.|.
T Consensus 62 qP~~l~~~e~~~~l~~l~~D~ivvvayG~ 90 (307)
T COG0223 62 QPEKLNDPEFLEELAALDPDLIVVVAYGQ 90 (307)
T ss_pred ccccCCcHHHHHHHhccCCCEEEEEehhh
Confidence 11222 23677777888888888877763
No 174
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=45.69 E-value=56 Score=25.52 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=29.0
Q ss_pred CCCeEE-EEEEecCchhHHHHHHHhcCCCEEEEccCC
Q 031262 71 PEVEVE-ALVIQGPKLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 71 ~~v~~~-~~v~~g~~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
-++++. ..+.+..-.+.|.+..+++.+|++|+..|.
T Consensus 127 l~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 127 IGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred hCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 456666 555566679999999999999999998775
No 175
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=45.25 E-value=1.2e+02 Score=22.22 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=47.0
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEE-EEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEAL-VIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKA 131 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~-v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~ 131 (162)
...+.+.+++.+++ .+..+.+. -..+++ ....++.+-..++|-|++...........+ +. +...
T Consensus 13 ~~~~~~g~~~~a~~--~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l----------~~-~~~~ 79 (257)
T PF13407_consen 13 WQQVIKGAKAAAKE--LGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFL----------EK-AKAA 79 (257)
T ss_dssp HHHHHHHHHHHHHH--HTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHH----------HH-HHHT
T ss_pred HHHHHHHHHHHHHH--cCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHH----------HH-Hhhc
Confidence 35566777778877 45666654 334454 344555555667999999887654333221 33 5557
Q ss_pred CceEEEEecC
Q 031262 132 DCLTVGVRKQ 141 (162)
Q Consensus 132 ~~pVlvv~~~ 141 (162)
.+||+.+...
T Consensus 80 gIpvv~~d~~ 89 (257)
T PF13407_consen 80 GIPVVTVDSD 89 (257)
T ss_dssp TSEEEEESST
T ss_pred CceEEEEecc
Confidence 8999998666
No 176
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=45.20 E-value=1.8e+02 Score=24.08 Aligned_cols=101 Identities=14% Similarity=0.005 Sum_probs=56.9
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
.+++.|..|. ..++.++-.+. ..|.++..+.+... .....+.++.+........ ...+..
T Consensus 303 gkrv~i~g~~----~~~~~la~~L~-elGm~v~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~--~~~v~~ 362 (435)
T cd01974 303 GKKFALYGDP----DFLIGLTSFLL-ELGMEPVHVLTGNG-------------GKRFEKEMQALLDASPYGA--GAKVYP 362 (435)
T ss_pred CCEEEEEcCh----HHHHHHHHHHH-HCCCEEEEEEeCCC-------------CHHHHHHHHHHHhhcCCCC--CcEEEE
Confidence 4667666543 34555555544 57877765554221 1233444555544321222 233444
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
+.....+.+.+++.++|+++=++++ .++.++...|.+.+..
T Consensus 363 ~~d~~e~~~~i~~~~pDliiG~s~~------------------~~~a~~~gip~v~~~~ 403 (435)
T cd01974 363 GKDLWHLRSLLFTEPVDLLIGNTYG------------------KYIARDTDIPLVRFGF 403 (435)
T ss_pred CCCHHHHHHHHhhcCCCEEEECccH------------------HHHHHHhCCCEEEeeC
Confidence 5557788888898899996644443 4566777777766643
No 177
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.12 E-value=1.5e+02 Score=25.40 Aligned_cols=104 Identities=10% Similarity=0.003 Sum_probs=55.5
Q ss_pred EEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEE-EecC
Q 031262 5 VMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALV-IQGP 83 (162)
Q Consensus 5 Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v-~~g~ 83 (162)
.+|.|.+-..|.+...-|.++.. .+-.+.+.. -+.... -..+++.--.+++..-...-+.. ..- ..+|
T Consensus 382 ~fvGVNGVGKSTNLAKIayWLlq-NkfrVLIAA-CDTFRs--------GAvEQLrtHv~rl~~l~~~~v~l-fekGYgkd 450 (587)
T KOG0781|consen 382 SFVGVNGVGKSTNLAKIAYWLLQ-NKFRVLIAA-CDTFRS--------GAVEQLRTHVERLSALHGTMVEL-FEKGYGKD 450 (587)
T ss_pred EEEeecCccccchHHHHHHHHHh-CCceEEEEe-ccchhh--------hHHHHHHHHHHHHHHhccchhHH-HhhhcCCC
Confidence 45667776677777777776652 222322222 222211 12334433333332221111110 011 1234
Q ss_pred c---hhHHHHHHHhcCCCEEEEccCCCCcccccccccCC
Q 031262 84 K---LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSS 119 (162)
Q Consensus 84 ~---~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~ 119 (162)
+ +..-+.+|+..+.|.|+|-+-|+..-...++++.+
T Consensus 451 ~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~ 489 (587)
T KOG0781|consen 451 AAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLA 489 (587)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHH
Confidence 3 56677889999999999999988766667777765
No 178
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=44.92 E-value=58 Score=27.93 Aligned_cols=68 Identities=7% Similarity=0.028 Sum_probs=43.5
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHH---HHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVM---SQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKA 131 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~---~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~ 131 (162)
..++.+.+++.+.++.. .+++.++.+.-.+++. +.....++|.||=. |+++ .++-++.
T Consensus 22 ~~~l~~~~~~i~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~dviIsr------------G~ta-----~~i~~~~ 82 (538)
T PRK15424 22 VSRLFELFRDISLEFDH--LANITPIQLGFEKAVTYIRKRLATERCDAIIAA------------GSNG-----AYLKSRL 82 (538)
T ss_pred HHHHHHHHHHHHHhcCC--CceEEehhhhHHHHHHHHHHHHhhCCCcEEEEC------------chHH-----HHHHhhC
Confidence 35577778888877543 3445544444333332 33445678988732 4566 7788888
Q ss_pred CceEEEEecC
Q 031262 132 DCLTVGVRKQ 141 (162)
Q Consensus 132 ~~pVlvv~~~ 141 (162)
++||+-|+..
T Consensus 83 ~iPVv~i~~s 92 (538)
T PRK15424 83 SVPVILIKPS 92 (538)
T ss_pred CCCEEEecCC
Confidence 9999999875
No 179
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=44.53 E-value=51 Score=25.80 Aligned_cols=36 Identities=8% Similarity=0.098 Sum_probs=28.7
Q ss_pred CCCeEE-EEEEecCchhHHHHHHHhcCCCEEEEccCC
Q 031262 71 PEVEVE-ALVIQGPKLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 71 ~~v~~~-~~v~~g~~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
-++++. ..+.+.+-.+.|.+..+++++|+||+..|.
T Consensus 128 l~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 128 LGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred cCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCch
Confidence 466666 445556669999999999999999998774
No 180
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=44.29 E-value=27 Score=27.56 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=31.6
Q ss_pred chhHHHHHHHhcCCCEEEEccCCC-Ccc-cccccccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 84 KLGTVMSQVRKLEVSVLVLGQKKH-SAF-INCFCGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 84 ~~~~I~~~a~~~~~dliVmG~~~~-~~~-~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
+....++.++ ++|+||+|-... +.+ ..+.+.. | ...+++++||++.|.+-.
T Consensus 173 ~~p~~l~AI~--~AD~IiigPgs~~TSI~P~L~v~g-----i-~~Ai~~s~a~kV~V~ni~ 225 (300)
T PF01933_consen 173 ANPEALEAIE--EADLIIIGPGSLYTSIIPNLLVPG-----I-REAIRESKAPKVYVSNIM 225 (300)
T ss_dssp B-HHHHHHHH--H-SEEEE-SS-CCCCCHHHHTSHH-----H-HHHHHHSSSEEEEE-SSB
T ss_pred CCHHHHHHHH--hCCEEEEcCCCchhhhcccccchh-----H-HHHHHhCCCCEEEEcCCC
Confidence 3788888888 669999998653 333 3333333 3 456777889999998754
No 181
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=44.14 E-value=1.3e+02 Score=22.30 Aligned_cols=129 Identities=11% Similarity=0.043 Sum_probs=73.0
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEec
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQG 82 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g 82 (162)
+||.|-+.++-....|+--|+. ....++++.++-...+. . ...+.+++ .++.....-...
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~-~~~~~a~i~~Visd~~~--A---------------~~lerA~~--~gIpt~~~~~k~ 60 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIK-GGKLDAEIVAVISDKAD--A---------------YALERAAK--AGIPTVVLDRKE 60 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHh-cCCCCcEEEEEEeCCCC--C---------------HHHHHHHH--cCCCEEEecccc
Confidence 4678888888878888888887 33345666655443221 1 12223333 355543333222
Q ss_pred C-----chhHHHHHHHhcCCCEEEEccCCC-----------Ccc---cccccccCCcchhHHHh----hhhCCceEEEEe
Q 031262 83 P-----KLGTVMSQVRKLEVSVLVLGQKKH-----------SAF---INCFCGTSSSEEFVDQC----IKKADCLTVGVR 139 (162)
Q Consensus 83 ~-----~~~~I~~~a~~~~~dliVmG~~~~-----------~~~---~~~~~Gs~~~~~~~~~v----~~~~~~pVlvv~ 139 (162)
. -.++|.+..++.++|+||+...-+ +.+ ...++....+...-++. .+-+.|.|-.|.
T Consensus 61 ~~~r~~~d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~~~grIlNIHPSLLP~f~G~h~~~~A~~aG~k~sG~TVH~V~ 140 (200)
T COG0299 61 FPSREAFDRALVEALDEYGPDLVVLAGYMRILGPEFLSRFEGRILNIHPSLLPAFPGLHAHEQALEAGVKVSGCTVHFVT 140 (200)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcchHHHcCHHHHHHhhcceEecCcccccCCCCchHHHHHHHcCCCccCcEEEEEc
Confidence 2 268899999999999999986532 001 11223333332222333 334689999998
Q ss_pred cCCCCCCcEEEece
Q 031262 140 KQSKGMGGYIISTR 153 (162)
Q Consensus 140 ~~~~~~~~~~~~~~ 153 (162)
.... +|.+|.+.
T Consensus 141 e~vD--~GpII~Q~ 152 (200)
T COG0299 141 EGVD--TGPIIAQA 152 (200)
T ss_pred cCCC--CCCeEEEE
Confidence 7666 45566553
No 182
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=42.82 E-value=97 Score=22.58 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=32.1
Q ss_pred HHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCccc
Q 031262 62 LGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFI 111 (162)
Q Consensus 62 ~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~ 111 (162)
+..+... .|.++ +.+...-|.+.+++.+.+.++|+|.++........
T Consensus 102 v~~~l~~--~G~~v-i~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~ 148 (201)
T cd02070 102 VATMLEA--NGFEV-IDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMG 148 (201)
T ss_pred HHHHHHH--CCCEE-EECCCCCCHHHHHHHHHHcCCCEEEEeccccccHH
Confidence 3445544 56555 22333447999999999999999999986544443
No 183
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=42.79 E-value=1.7e+02 Score=23.34 Aligned_cols=91 Identities=10% Similarity=0.092 Sum_probs=53.1
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
-+++.+-.| ++.+...++...+.+...+.+|....+....... ....+...++++. .-..+.++..
T Consensus 118 wk~vailYd-sd~gl~~lq~l~~~~~~~g~~V~~~~~~~i~~~~--------~~~d~~~~L~~ik-----~~~~~~Iil~ 183 (370)
T cd06389 118 WDKFAYLYD-SDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDR--------KDEAYRSLFQDLE-----NKKERRVILD 183 (370)
T ss_pred CcEEEEEec-CchHHHHHHHHHHhhccCCceEEEEEeecCCCcc--------chHHHHHHHHHhc-----cccceEEEEE
Confidence 367888888 6678888888888887778777765543211100 1123334444432 1224445555
Q ss_pred cCc--hhHHHHHHHhcCCCEE----EEccCC
Q 031262 82 GPK--LGTVMSQVRKLEVSVL----VLGQKK 106 (162)
Q Consensus 82 g~~--~~~I~~~a~~~~~dli----VmG~~~ 106 (162)
+.+ ...|++.+.+.+.+-- ++|.-+
T Consensus 184 ~~~~~~~~il~qa~~~gm~~~~y~~il~~~~ 214 (370)
T cd06389 184 CERDKVNDIVDQVITIGKHVKGYHYIIANLG 214 (370)
T ss_pred CCHHHHHHHHHHHHHhCccccceEEEEccCC
Confidence 554 6778888887765433 455543
No 184
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=42.78 E-value=52 Score=26.08 Aligned_cols=50 Identities=12% Similarity=0.200 Sum_probs=34.3
Q ss_pred chhHHHHHHHhcCCCEEEEccCCC-Cc-ccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 84 KLGTVMSQVRKLEVSVLVLGQKKH-SA-FINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 84 ~~~~I~~~a~~~~~dliVmG~~~~-~~-~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
+....++.++ ++|+||+|--.. +. +..+++.. | .+.+++++||++.|.+-
T Consensus 165 ~~~~a~~AI~--~AD~Iv~gPGSlyTSI~P~Llv~g-----I-~eAi~~s~a~kV~v~N~ 216 (308)
T cd07187 165 ANPEALEAIE--EADLIVYGPGSLYTSILPNLLVKG-----I-AEAIRASKAPKVYICNL 216 (308)
T ss_pred CCHHHHHHHH--hCCEEEECCCccHHHhhhhcCchh-----H-HHHHHhCCCCEEEEecC
Confidence 3778888888 779999998653 22 23333333 3 44567789999998774
No 185
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=42.38 E-value=1.1e+02 Score=20.86 Aligned_cols=34 Identities=15% Similarity=0.009 Sum_probs=25.2
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeC
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVP 40 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~ 40 (162)
.++|++.|-.+|.-++.++.+.. +.++..+|+..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~---~~~v~~v~~~~ 36 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKY---GLNPLAVTVDN 36 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHh---CCceEEEEeCC
Confidence 58999999999998888876542 22566777753
No 186
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=41.76 E-value=1.4e+02 Score=22.07 Aligned_cols=83 Identities=13% Similarity=0.067 Sum_probs=46.5
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe-c
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ-G 82 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~-g 82 (162)
||.|-+.++.....++-.+++.- ..+.++ +.|+...... ...+.+++ .++.+...-.. .
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~~-~l~~~i--~~visn~~~~---------------~~~~~A~~--~gIp~~~~~~~~~ 60 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLDG-RVNGDV--VVVVTNKPGC---------------GGAEYARE--NGIPVLVYPKTKG 60 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHcC-CCCeEE--EEEEEeCCCC---------------hHHHHHHH--hCCCEEEeccccC
Confidence 46666777777777777766432 233444 4444332211 12334444 45655432111 1
Q ss_pred --C--chhHHHHHHHhcCCCEEEEccCC
Q 031262 83 --P--KLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 83 --~--~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
. ..+.+.+..++.++|++|+...+
T Consensus 61 ~~~~~~~~~~~~~l~~~~~Dliv~agy~ 88 (207)
T PLN02331 61 EPDGLSPDELVDALRGAGVDFVLLAGYL 88 (207)
T ss_pred CCcccchHHHHHHHHhcCCCEEEEeCcc
Confidence 1 15678888999999999997654
No 187
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.64 E-value=2.1e+02 Score=23.92 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=45.2
Q ss_pred EEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCc-
Q 031262 6 MVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPK- 84 (162)
Q Consensus 6 lv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~- 84 (162)
+|.+.+|......-.+|..+ +..|-..-++..- .. .....+.++..+.+ .++.+-..-.+-+|
T Consensus 106 fVGLqG~GKTTtc~KlA~y~-kkkG~K~~LvcaD-TF------------RagAfDQLkqnA~k--~~iP~ygsyte~dpv 169 (483)
T KOG0780|consen 106 FVGLQGSGKTTTCTKLAYYY-KKKGYKVALVCAD-TF------------RAGAFDQLKQNATK--ARVPFYGSYTEADPV 169 (483)
T ss_pred EEeccCCCcceeHHHHHHHH-HhcCCceeEEeec-cc------------ccchHHHHHHHhHh--hCCeeEecccccchH
Confidence 45556665555555555543 3344444444431 11 12233444444444 34444443334444
Q ss_pred --hhHHHHHHHhcCCCEEEEccCCCCcc
Q 031262 85 --LGTVMSQVRKLEVSVLVLGQKKHSAF 110 (162)
Q Consensus 85 --~~~I~~~a~~~~~dliVmG~~~~~~~ 110 (162)
+..=++..++.++|+|++-+.|+...
T Consensus 170 ~ia~egv~~fKke~fdvIIvDTSGRh~q 197 (483)
T KOG0780|consen 170 KIASEGVDRFKKENFDVIIVDTSGRHKQ 197 (483)
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCCchhh
Confidence 34444556667788888877776544
No 188
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=41.58 E-value=1.1e+02 Score=22.55 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=28.8
Q ss_pred cchHHHHHHHHhHHHhC-CCCeEEEEEEecCchhHHHHHHHhcCCCEEEEcc
Q 031262 54 CCPYLANSLGSLCKACK-PEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQ 104 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~-~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~ 104 (162)
-.++..++++++.+... .+..+.+.+ +|.....-+....+.++|.+|+|+
T Consensus 145 f~~~~~~KI~~l~~~~~~~~~~~~I~v-DGGI~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 145 FIPEVLEKIRELRKLIPENGLDFEIEV-DGGINEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp -HGGHHHHHHHHHHHHHHHTCGSEEEE-ESSESTTTHHHHHHHT--EEEESH
T ss_pred ccHHHHHHHHHHHHHHHhcCCceEEEE-ECCCCHHHHHHHHHcCCCEEEECH
Confidence 33455555544433321 345566666 777766666666678999999997
No 189
>PRK09213 pur operon repressor; Provisional
Probab=41.45 E-value=1.3e+02 Score=23.33 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=28.6
Q ss_pred hHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCCC
Q 031262 86 GTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSKG 144 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~~ 144 (162)
+.+.+...+.++|. |+|....+ +.++ ..+.....+|++++|+..+.
T Consensus 120 ~~la~~~~~~~iD~-Vvtvet~G----IplA--------~~vA~~L~vp~vivRK~~K~ 165 (271)
T PRK09213 120 RIIASAFADKKIDA-VMTVETKG----IPLA--------YAVANYLNVPFVIVRRDSKV 165 (271)
T ss_pred HHHHHHhcccCCCE-EEEEcccc----HHHH--------HHHHHHHCCCEEEEEECCCC
Confidence 34444445556785 45554333 3333 44577789999999998775
No 190
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=41.29 E-value=45 Score=19.69 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=14.3
Q ss_pred EEEEEeCCChhhHHHHHHHHHhc
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHV 26 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a 26 (162)
+|.++.|.++....+..+..+.+
T Consensus 49 ~Iii~~D~D~~G~~~~~~i~~~l 71 (76)
T smart00493 49 EVILATDPDREGEAIAWKLAELL 71 (76)
T ss_pred EEEEEcCCChhHHHHHHHHHHHh
Confidence 46667776666666665555544
No 191
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=41.27 E-value=98 Score=25.78 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=37.5
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
.+.|++.+++.++|++|-|--=...--..-.|... ..|-.+..+|++..=
T Consensus 65 ~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va-----~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 65 VARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEIC-----KVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHH-----HHHHHhhCCCeEEEe
Confidence 36789999999999999997543333334455555 888899999998763
No 192
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=41.13 E-value=65 Score=21.79 Aligned_cols=38 Identities=18% Similarity=0.067 Sum_probs=31.7
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
..+|+|+-|....|....+.++.-+...|.++..+...
T Consensus 40 ~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g~~ 77 (137)
T PF02878_consen 40 GSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIGLV 77 (137)
T ss_dssp SSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEEEB
T ss_pred CCeEEEEEcccCCHHHHHHHHHHHHhhccccccccccc
Confidence 46899999999999999999888888889888888744
No 193
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=40.71 E-value=85 Score=20.01 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=29.0
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCC
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
..+.+++.+++ .|+++.+..........-+....-..+|+|++-.....
T Consensus 17 aa~~L~~aa~~--~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~~ 65 (96)
T cd05569 17 AAEALEKAAKK--LGWEIKVETQGSLGIENELTAEDIAEADAVILAADVPV 65 (96)
T ss_pred HHHHHHHHHHH--CCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCCC
Confidence 34667777777 67776666544333222232233347899999887643
No 194
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=40.59 E-value=68 Score=25.92 Aligned_cols=57 Identities=9% Similarity=0.091 Sum_probs=39.7
Q ss_pred ecCchhHHHHHHHhcCCCEEEEccCCCCcc-ccc---------------ccccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 81 QGPKLGTVMSQVRKLEVSVLVLGQKKHSAF-INC---------------FCGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 81 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~-~~~---------------~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
.-....+|++.|++.+..+|+.-+.+.... ... .++... ..+.+++++||.+==...
T Consensus 25 n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~A~~~~VPValHLDHg 97 (345)
T cd00946 25 SSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHV-----RSMAEHYGVPVVLHTDHC 97 (345)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHH-----HHHHHHCCCCEEEECCCC
Confidence 344589999999999999999988764321 111 233333 778889999988754443
No 195
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=40.53 E-value=1.7e+02 Score=23.20 Aligned_cols=44 Identities=9% Similarity=0.184 Sum_probs=28.3
Q ss_pred hhHHHHHHHhcCCCEEE-EccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 85 LGTVMSQVRKLEVSVLV-LGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
.+.+.+.+++.++|.|| +|.- |+. ++++.+.-...+|++.|+-.
T Consensus 65 v~~~~~~~~~~~~D~iIavGGG-----------s~~--D~aK~ia~~~~~p~i~VPTT 109 (347)
T cd08172 65 IERLAAQAKENGADVIIGIGGG-----------KVL--DTAKAVADRLGVPVITVPTL 109 (347)
T ss_pred HHHHHHHHHhcCCCEEEEeCCc-----------HHH--HHHHHHHHHhCCCEEEecCc
Confidence 56677778889999776 5532 222 22255555557899998764
No 196
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=40.53 E-value=1.3e+02 Score=25.76 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=42.4
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHH---HHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLGTVM---SQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~---~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..+.+.+.+.+.++.. .+++.+..|+-.+++. +.....++|.||=. |+++ ..+-++.+
T Consensus 13 ~~l~~~~~~i~~~~~~--~~~~~v~~~~~~~~~~~a~~~~~~~~~dviIsr------------G~ta-----~~i~~~~~ 73 (526)
T TIGR02329 13 SRLFDLFRDIAPEFDH--RANITPIQLGFEDAVREIRQRLGAERCDVVVAG------------GSNG-----AYLKSRLS 73 (526)
T ss_pred HHHHHHHHHHHHhCCC--CceEEEEeccHHHHHHHHHHHHHhCCCcEEEEC------------chHH-----HHHHHhCC
Confidence 4566677777776432 2444455566544444 33556678888732 3556 77777789
Q ss_pred ceEEEEecC
Q 031262 133 CLTVGVRKQ 141 (162)
Q Consensus 133 ~pVlvv~~~ 141 (162)
.||+-|+..
T Consensus 74 iPVv~i~~s 82 (526)
T TIGR02329 74 LPVIVIKPT 82 (526)
T ss_pred CCEEEecCC
Confidence 999999775
No 197
>PRK00211 sulfur relay protein TusC; Validated
Probab=40.50 E-value=84 Score=21.01 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=25.4
Q ss_pred CcEEEEEeCCC----hhhHHHHHHHHHhccCCCCEEEEEEEe
Q 031262 2 RKRVMVVVDQT----SHSKHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 2 ~~~Ilv~vD~S----~~s~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
|+++++-+..+ +.++.+++.|+..+... .++.++..-
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala~~a~~-~~v~vff~~ 41 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLATSAFT-EDIGVFFID 41 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhccc-CCeeEEEEh
Confidence 56788888754 46678888888766543 367666654
No 198
>PF13362 Toprim_3: Toprim domain
Probab=40.34 E-value=81 Score=19.73 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=24.9
Q ss_pred CcEEEEEeCCChh--hHHHHHHHHHhccCCCCEEEEEE
Q 031262 2 RKRVMVVVDQTSH--SKHAMMWALTHVTNKGDLLTLLH 37 (162)
Q Consensus 2 ~~~Ilv~vD~S~~--s~~al~~A~~~a~~~~~~l~l~h 37 (162)
.++|+++.|.... ...+...+.+.+...+-.+.++-
T Consensus 41 ~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~ 78 (96)
T PF13362_consen 41 GRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVE 78 (96)
T ss_pred CCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEEC
Confidence 4678999998877 77777777666666565555443
No 199
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=40.28 E-value=1.5e+02 Score=22.41 Aligned_cols=43 Identities=7% Similarity=0.100 Sum_probs=30.6
Q ss_pred hHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEE
Q 031262 86 GTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGV 138 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv 138 (162)
+.+++..+..++|..++|.|....-... ....++.++.|+|.-
T Consensus 61 ~~~~~~l~~l~~d~~~~GNHefd~g~~~----------l~~~~~~~~~~~L~a 103 (257)
T cd07406 61 KQMVPVLNALGVDLACFGNHEFDFGEDQ----------LQKRLGESKFPWLSS 103 (257)
T ss_pred ccHHHHHHhcCCcEEeecccccccCHHH----------HHHHHhhCCCCEEEE
Confidence 5788888999999999999985321111 145667788888774
No 200
>PRK10481 hypothetical protein; Provisional
Probab=40.19 E-value=1.6e+02 Score=22.20 Aligned_cols=108 Identities=12% Similarity=-0.031 Sum_probs=59.1
Q ss_pred HHHHHHHHHhccCCCCEEEEEEEeCCCCCC-C----CCCCc-------------------cccchHHHHHHHHhHHHhCC
Q 031262 16 KHAMMWALTHVTNKGDLLTLLHVVPPPKPN-T----SHHDS-------------------SACCPYLANSLGSLCKACKP 71 (162)
Q Consensus 16 ~~al~~A~~~a~~~~~~l~l~hv~~~~~~~-~----~~~~~-------------------~~~~~~~~~~~~~~~~~~~~ 71 (162)
...++..+..+.+.|...+++-........ . ...|. .-..++..+..+++...
T Consensus 76 ~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i~~lv~Al~~g~riGVitP~~~qi~~~~~kw~~~--- 152 (224)
T PRK10481 76 ERDLQSVIEVLDNQGYDVILLLCTGEFPSLTARNAILLEPSRILPPLVAAIVGGHQVGVIVPVEEQLAQQAQKWQVL--- 152 (224)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecCCCCCccccCccccCchhhHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHHHhc---
Confidence 345666666666777777777766542221 0 01111 12223333344444443
Q ss_pred CCeEEEEEEe--cCchhHHHHHHH---hcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEE
Q 031262 72 EVEVEALVIQ--GPKLGTVMSQVR---KLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGV 138 (162)
Q Consensus 72 ~v~~~~~v~~--g~~~~~I~~~a~---~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv 138 (162)
+.++...... ....+.+.+.++ +.++|.||++..|.+. . . . ..+-+..++||+..
T Consensus 153 G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~-~-~-----~-----~~le~~lg~PVI~~ 212 (224)
T PRK10481 153 QKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ-R-H-----R-----DLLQKALDVPVLLS 212 (224)
T ss_pred CCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH-H-H-----H-----HHHHHHHCcCEEcH
Confidence 4444422211 123456777777 5689999999998663 1 1 2 56677888999864
No 201
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=39.87 E-value=28 Score=28.86 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=21.3
Q ss_pred CchhHHHHHHHhcCCCEEEEccCC
Q 031262 83 PKLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 83 ~~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
...+.|+++|++.++||+|+|...
T Consensus 50 ~~~~~lv~fA~~~~idl~vVGPE~ 73 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVGPEA 73 (428)
T ss_pred cCHHHHHHHHHHcCCCEEEECCcH
Confidence 456999999999999999999864
No 202
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=39.78 E-value=2.2e+02 Score=23.54 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=31.0
Q ss_pred EEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 77 ALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 77 ~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
..+........+.+.+++.++|+++=++++ .++.++...|.+-+..
T Consensus 353 ~~v~~~~d~~e~~~~l~~~~~dliiG~s~~------------------~~~a~~~~ip~~~~~~ 398 (429)
T cd03466 353 CVILDGADFFDIESYAKELKIDVLIGNSYG------------------RRIAEKLGIPLIRIGF 398 (429)
T ss_pred eEEEeCCCHHHHHHHHHhcCCCEEEECchh------------------HHHHHHcCCCEEEecC
Confidence 333444446777888888888888766553 5667778888776643
No 203
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=39.77 E-value=2e+02 Score=23.20 Aligned_cols=61 Identities=10% Similarity=0.131 Sum_probs=34.8
Q ss_pred CCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCC---CcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 71 PEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKH---SAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 71 ~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~---~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
.|+++..+. . .++--...+.++|.+++|+..- +..-+. .|+.. + --+.++..+||+++-+.
T Consensus 205 ~GI~vtlI~--D---sa~~~~M~~~~vd~VivGAd~I~~nG~v~Nk-iGT~~---l-Al~Ak~~~vPfyV~a~~ 268 (344)
T PRK05720 205 AGIDVTVIT--D---NMAAHLMQTGKIDAVIVGADRIAANGDVANK-IGTYQ---L-AIAAKYHGVPFYVAAPS 268 (344)
T ss_pred CCCCEEEEc--c---cHHHHHhcccCCCEEEEcccEEecCCCEeeh-hhHHH---H-HHHHHHhCCCEEEeccc
Confidence 366655444 1 1222333445799999999863 222222 34333 1 34567779999998664
No 204
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=39.61 E-value=1.3e+02 Score=20.88 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=53.5
Q ss_pred cEEEEEeCCChhh---HHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEE
Q 031262 3 KRVMVVVDQTSHS---KHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALV 79 (162)
Q Consensus 3 ~~Ilv~vD~S~~s---~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v 79 (162)
+..+++-.+.+.. ...++.|.+++ ++++++=...+.... .-..++-.+.+++.+..+ +++++ ..
T Consensus 2 kiai~~GSFDPih~GHl~ii~~A~~~~----D~v~v~v~~np~K~~------~~s~e~R~~~l~~~~~~~-~~v~v--~~ 68 (140)
T PRK13964 2 KIAIYPGSFDPFHKGHLNILKKALKLF----DKVYVVVSINPDKSN------ASDLDSRFKNVKNKLKDF-KNVEV--LI 68 (140)
T ss_pred eEEEEeeeeCCCCHHHHHHHHHHHHhC----CEEEEEeccCCCCCC------CCCHHHHHHHHHHHHcCC-CCcEE--ec
Confidence 5567777766643 45666676664 566544333221111 012344445555555543 44433 21
Q ss_pred EecCchhHHHHHHHhcCCCEEEEccCCCCccc
Q 031262 80 IQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFI 111 (162)
Q Consensus 80 ~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~ 111 (162)
.. ..-+++++++.+++.+|-|-+..+.+.
T Consensus 69 ~~---~~l~v~~~~~~~a~~ivrGlR~~~Dfe 97 (140)
T PRK13964 69 NE---NKLTAEIAKKLGANFLIRSARNNIDFQ 97 (140)
T ss_pred Cc---CCcHHHHHHHCCCeEEEEecCCCccHH
Confidence 11 246689999999999999999866664
No 205
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=39.37 E-value=1.8e+02 Score=22.65 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=47.5
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe-
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ- 81 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~- 81 (162)
.||.|-..++.....++-.+.+.- ..+.++.++-.. .. .+..++++ .++.+...-..
T Consensus 90 ~ri~vl~Sg~g~nl~al~~~~~~~-~~~~~i~~visn--~~-----------------~~~~lA~~--~gIp~~~~~~~~ 147 (286)
T PRK13011 90 PKVLIMVSKFDHCLNDLLYRWRIG-ELPMDIVGVVSN--HP-----------------DLEPLAAW--HGIPFHHFPITP 147 (286)
T ss_pred ceEEEEEcCCcccHHHHHHHHHcC-CCCcEEEEEEEC--Cc-----------------cHHHHHHH--hCCCEEEeCCCc
Confidence 467777777777777777776532 234555544332 11 12223444 46655432111
Q ss_pred cC---chhHHHHHHHhcCCCEEEEccCC
Q 031262 82 GP---KLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 82 g~---~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
.+ ....+.+..++.++|++|+...+
T Consensus 148 ~~~~~~~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK13011 148 DTKPQQEAQVLDVVEESGAELVVLARYM 175 (286)
T ss_pred CchhhhHHHHHHHHHHhCcCEEEEeChh
Confidence 11 24568888999999999998654
No 206
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=38.86 E-value=2.1e+02 Score=23.08 Aligned_cols=96 Identities=13% Similarity=0.164 Sum_probs=55.9
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCC-CCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE-
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKP-NTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI- 80 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~- 80 (162)
++|+|++.+..+|.-++.++.+ .+.+++.+|+...... ....+. -...+-.+.+++.|+.+ +++..+.-.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~~~~~~~--c~~~~~~~~a~~va~~l--gIp~~vid~~ 72 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ----QGYEVVGVFMKNWEEDDKNDGHG--CTSAEDLRDAQAICEKL--GIPLEKVNFQ 72 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH----cCCeEEEEEEEcccccccccccC--cCCHHHHHHHHHHHHHc--CCCEEEEECH
Confidence 4799999999999888877665 3568888888421111 000000 01122334555666663 444432211
Q ss_pred ----------------ecC-----------c-hhHHHHHHHhc-CCCEEEEccCC
Q 031262 81 ----------------QGP-----------K-LGTVMSQVRKL-EVSVLVLGQKK 106 (162)
Q Consensus 81 ----------------~g~-----------~-~~~I~~~a~~~-~~dliVmG~~~ 106 (162)
.|. . ...+.++|++. ++|.|..|++-
T Consensus 73 ~~f~~~v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya 127 (352)
T TIGR00420 73 KEYWNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYA 127 (352)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 011 1 25666888886 99999999975
No 207
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=38.84 E-value=35 Score=28.28 Aligned_cols=50 Identities=6% Similarity=0.096 Sum_probs=37.5
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
.+.|++.+++.++|++|-|--=...--..-.|..+ ..|-.+..+|++..=
T Consensus 65 ~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va-----~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 65 KAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAIT-----KAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHH-----HHHHHhhCCCeEEEe
Confidence 36789999999999999997543333334455555 888899999998763
No 208
>COG1162 Predicted GTPases [General function prediction only]
Probab=38.84 E-value=2e+02 Score=22.84 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=75.0
Q ss_pred EEEEeCCChhhHHHHHHHHHhccCCC-CEEEEEEEeCCCCCCCCCCCccccchHHH-HHHHHhHHHhCCCCeEE-EEEEe
Q 031262 5 VMVVVDQTSHSKHAMMWALTHVTNKG-DLLTLLHVVPPPKPNTSHHDSSACCPYLA-NSLGSLCKACKPEVEVE-ALVIQ 81 (162)
Q Consensus 5 Ilv~vD~S~~s~~al~~A~~~a~~~~-~~l~l~hv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~-~~v~~ 81 (162)
|++..-.-+.+..-++.++-.|...+ .++.++.-.+..... +.. +.+...... -+..+- +-...
T Consensus 85 iIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~-----------~~~~~~~~~~y~~--~gy~v~~~s~~~ 151 (301)
T COG1162 85 IVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDE-----------EAAVKELLREYED--IGYPVLFVSAKN 151 (301)
T ss_pred EEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcch-----------HHHHHHHHHHHHh--CCeeEEEecCcC
Confidence 44455555567778888887777777 456666655544221 111 223333333 243332 22233
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCC--CcccccccccCCc--chhHHHh--hhhCCceEEEEecCCCCCCcEEEeceee
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKH--SAFINCFCGTSSS--EEFVDQC--IKKADCLTVGVRKQSKGMGGYIISTRWQ 155 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~--~~~~~~~~Gs~~~--~~~~~~v--~~~~~~pVlvv~~~~~~~~~~~~~~~~~ 155 (162)
++..+.+.++.+.. -.+++|..|- +.+-+.+.|+... .+|.+.. =+|+..-+-++.-+ +||.+++|+--
T Consensus 152 ~~~~~~l~~~l~~~--~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~---~gG~iiDTPGf 226 (301)
T COG1162 152 GDGLEELAELLAGK--ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP---GGGWIIDTPGF 226 (301)
T ss_pred cccHHHHHHHhcCC--eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC---CCCEEEeCCCC
Confidence 56678888888866 8899999874 6677777664431 1111111 13444444444332 57999999654
Q ss_pred cee
Q 031262 156 KNF 158 (162)
Q Consensus 156 ~~~ 158 (162)
++|
T Consensus 227 ~~~ 229 (301)
T COG1162 227 RSL 229 (301)
T ss_pred Ccc
Confidence 433
No 209
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=38.72 E-value=1.3e+02 Score=24.44 Aligned_cols=78 Identities=10% Similarity=0.118 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHH
Q 031262 14 HSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVR 93 (162)
Q Consensus 14 ~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~ 93 (162)
.+++.+++|.++|.+.+.+++++|=-.... . ..-+.+.+++...++ ++++++...+ ......++.-=
T Consensus 167 ~~~Ri~r~Af~~A~~r~~~Vt~v~KaNvl~-~---------~glf~~~~~eva~ey-p~i~~~~~~v-Da~~~~lv~~P- 233 (358)
T PRK00772 167 EIERIARVAFELARKRRKKVTSVDKANVLE-S---------SRLWREVVTEVAKEY-PDVELSHMYV-DNAAMQLVRNP- 233 (358)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEECccccc-c---------chHHHHHHHHHHhHC-CCceEEEEeH-HHHHHHHhhCc-
Confidence 567788888888876666899988544332 1 122334445555543 6666655442 11122233222
Q ss_pred hcCCCEEEEccC
Q 031262 94 KLEVSVLVLGQK 105 (162)
Q Consensus 94 ~~~~dliVmG~~ 105 (162)
.+.|.||+..-
T Consensus 234 -~~fDViv~~Nl 244 (358)
T PRK00772 234 -KQFDVIVTENL 244 (358)
T ss_pred -ccCeEEeecCc
Confidence 34686666553
No 210
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=38.66 E-value=1.7e+02 Score=24.85 Aligned_cols=77 Identities=6% Similarity=-0.014 Sum_probs=45.0
Q ss_pred cchHHHHHHHHhHHHhC--CCCeEEEEEEe-cCchhHHHHHHHh----cCCCEEEEccCCCCcccccccccCCcchhHHH
Q 031262 54 CCPYLANSLGSLCKACK--PEVEVEALVIQ-GPKLGTVMSQVRK----LEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQ 126 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~--~~v~~~~~v~~-g~~~~~I~~~a~~----~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~ 126 (162)
..+++.+..+++++... ..+.+++.... -...+.+.+..++ .++|.|++-.+..++-+ ..-.
T Consensus 17 ~l~~~~~~~~~i~~~l~~~~~~~~~v~~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~-----------~~i~ 85 (484)
T cd03557 17 ALKQVAAHSREIVDGLNASGKLPVKIVFKPVLTTPDEILAVCREANADDNCAGVITWMHTFSPAK-----------MWIA 85 (484)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCeEEEEccccCCHHHHHHHHHHccccCCccEEEEccCCCchHH-----------HHHH
Confidence 44555555566666542 22334433321 1224555555555 45999999887654322 1256
Q ss_pred hhhhCCceEEEEecC
Q 031262 127 CIKKADCLTVGVRKQ 141 (162)
Q Consensus 127 v~~~~~~pVlvv~~~ 141 (162)
+++..++|||+...+
T Consensus 86 ~~~~l~~PvL~~~~q 100 (484)
T cd03557 86 GLTALQKPLLHLHTQ 100 (484)
T ss_pred HHHHcCCCEEEEccC
Confidence 678889999999765
No 211
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=38.55 E-value=78 Score=25.63 Aligned_cols=86 Identities=8% Similarity=0.089 Sum_probs=49.0
Q ss_pred chHHHHHHHHhHHHhCCCCeEE-EEEEecCchhHHHHHHHhcCCCEEEEccCCCCcc------cc-----cccccCCcch
Q 031262 55 CPYLANSLGSLCKACKPEVEVE-ALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAF------IN-----CFCGTSSSEE 122 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~-~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~------~~-----~~~Gs~~~~~ 122 (162)
.+++.+.++...+. +.-+- .-+..-.-..+|++.|++.+..+|+.-+.+.... .. .+.|-..-..
T Consensus 6 ~~~~k~~L~~A~~~---~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (350)
T PRK09197 6 GEDYQEMFDRAKEN---GFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAK 82 (350)
T ss_pred HHHHHHHHHHHHHC---CceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHH
Confidence 34555555544333 22222 2223344589999999999999999888764322 11 1111100112
Q ss_pred hHHHhhhhCCceEEEEecCCC
Q 031262 123 FVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 123 ~~~~v~~~~~~pVlvv~~~~~ 143 (162)
.+..+++++++||.+==....
T Consensus 83 ~v~~~A~~~~VPValHLDHg~ 103 (350)
T PRK09197 83 HVHEVAEHYGVPVILHTDHCA 103 (350)
T ss_pred HHHHHHHHCCCCEEEECCCCC
Confidence 337788999999887544443
No 212
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=38.54 E-value=2.2e+02 Score=23.25 Aligned_cols=25 Identities=4% Similarity=0.193 Sum_probs=17.2
Q ss_pred CchhHHHHHHHhcCC--CEEEEccCCC
Q 031262 83 PKLGTVMSQVRKLEV--SVLVLGQKKH 107 (162)
Q Consensus 83 ~~~~~I~~~a~~~~~--dliVmG~~~~ 107 (162)
+....+++.+.+.+. +.+.+|+.+.
T Consensus 241 ~~~~~~~~~a~~~g~~~~~~~i~~~~~ 267 (452)
T cd06362 241 DDIRGLLAAAKRLNAEGHFQWIASDGW 267 (452)
T ss_pred HHHHHHHHHHHHcCCcCceEEEEeccc
Confidence 346677788887776 5777777553
No 213
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=38.41 E-value=73 Score=23.48 Aligned_cols=122 Identities=11% Similarity=0.036 Sum_probs=62.2
Q ss_pred CcEEEEEeCCChhhHH-HHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE
Q 031262 2 RKRVMVVVDQTSHSKH-AMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI 80 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~-al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~ 80 (162)
.++|++++-||-.+.. +.+.+-.+. +.|.++.++-.-........... ..+ ++..+....... +.+.+.
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~-k~G~~V~vv~T~aA~~~~~~~~~----~~~---~~~~l~~ls~~~--v~~~~~ 74 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLV-DEGAEVTPIVSYTVQTTDTRFGK----AEE---WIKKIEEITGNK--VINTIV 74 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHH-hCcCEEEEEECHhHHHHhhhcCC----hHH---HHHHHHHHHCCC--cEEecC
Confidence 4789999999999988 588777664 45777665542211100000000 011 111222221112 222221
Q ss_pred ecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhh---hCCceEEEEecC
Q 031262 81 QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIK---KADCLTVGVRKQ 141 (162)
Q Consensus 81 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~---~~~~pVlvv~~~ 141 (162)
+.+ +... ...+|.+|+.--..+.+.++-.|-..+ .+..++. +.++||++++.-
T Consensus 75 ~~~----~isl--s~~aD~mvIAPaSanTLAKiA~GiaDn--ll~~aa~a~lke~~PvvlaPAM 130 (196)
T PRK08305 75 EAE----PLGP--KKLLDCMVIAPCTGNTMAKLANAITDS--PVLMAAKATLRNQRPVVLAIST 130 (196)
T ss_pred CCc----cCcc--ccccCEEEEEeCCHhHHHHHHccccCc--HHHHHHHHHhcCCCCEEEEECC
Confidence 111 1222 346788888877767677666665541 1122222 237999999874
No 214
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=38.25 E-value=1.9e+02 Score=22.38 Aligned_cols=45 Identities=9% Similarity=0.126 Sum_probs=30.5
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
.+.+++..+..++|.+.+|.|....=...+ ...+..+..|++...
T Consensus 64 g~~~~~~~n~~g~Da~~~GNHEfD~G~~~L----------~~~~~~~~fp~l~aN 108 (285)
T cd07405 64 AEPDFRGMNLVGYDAMAVGNHEFDNPLEVL----------RQQMKWANFPLLSAN 108 (285)
T ss_pred cchHHHHHHhhCCcEEeecccccccCHHHH----------HHHHhhCCCCEEEEE
Confidence 356678889999999999998743211111 445566778877764
No 215
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=38.23 E-value=1.5e+02 Score=23.82 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=15.1
Q ss_pred hhHHHHHHHhcCCCEEE-Ecc
Q 031262 85 LGTVMSQVRKLEVSVLV-LGQ 104 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliV-mG~ 104 (162)
.+.+++.+++.++|.|| +|.
T Consensus 69 v~~~~~~~~~~~~d~IiaiGG 89 (370)
T cd08551 69 VDAAVAAYREEGCDGVIAVGG 89 (370)
T ss_pred HHHHHHHHHhcCCCEEEEeCC
Confidence 45677777888999977 665
No 216
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=38.20 E-value=1.8e+02 Score=22.19 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=23.0
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEcc
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQ 104 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~ 104 (162)
..+.+.+++.+..+..++.+...-..+++ ...+++.+...++|-||+..
T Consensus 15 ~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~ 65 (303)
T cd01539 15 SLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNL 65 (303)
T ss_pred HHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 44445555555553223333322222233 22445555666777766654
No 217
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=37.50 E-value=1e+02 Score=23.10 Aligned_cols=69 Identities=7% Similarity=0.216 Sum_probs=39.3
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC-ceEEEEecCCC----CCCcEEEec--eeece
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD-CLTVGVRKQSK----GMGGYIIST--RWQKN 157 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~-~pVlvv~~~~~----~~~~~~~~~--~~~~~ 157 (162)
.+.+.+.+.+.+.|.|++|.+..-. . +. ++++..+-+..+ .||++.+.... .-..+++.+ ++-+.
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v~-~------~~-~~~~~~ik~~~~~~Pvilfp~~~~~i~~~aDa~l~~svlns~n~ 85 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGVS-S------TL-DNVVRLIKRIRRPVPVILFPSNPEAVSPGADAYLFPSVLNSGDP 85 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccchh-h------hH-HHHHHHHHHhcCCCCEEEeCCCccccCcCCCEEEEEeeecCCCc
Confidence 4667777887889999999875221 1 01 111122223333 99999877422 123555554 55666
Q ss_pred eeec
Q 031262 158 FWLL 161 (162)
Q Consensus 158 ~~~~ 161 (162)
+|+.
T Consensus 86 ~~i~ 89 (219)
T cd02812 86 YWII 89 (219)
T ss_pred hHHH
Confidence 6653
No 218
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=37.50 E-value=1.9e+02 Score=22.31 Aligned_cols=85 Identities=11% Similarity=0.026 Sum_probs=52.4
Q ss_pred ChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCC-CCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHH
Q 031262 12 TSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPN-TSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMS 90 (162)
Q Consensus 12 S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~ 90 (162)
-++...++++|.++. ..+.++.....+++-+.. ...+. .++-...+++.+++ .|+.+-+.+.+-...+.+
T Consensus 37 ie~~~~~~~~A~~lk-~~g~~~~r~~~~kpRTs~~s~~G~----g~~gl~~l~~~~~~--~Gl~~~te~~d~~~~~~l-- 107 (266)
T PRK13398 37 VESEEQMVKVAEKLK-ELGVHMLRGGAFKPRTSPYSFQGL----GEEGLKILKEVGDK--YNLPVVTEVMDTRDVEEV-- 107 (266)
T ss_pred CCCHHHHHHHHHHHH-HcCCCEEEEeeecCCCCCCccCCc----HHHHHHHHHHHHHH--cCCCEEEeeCChhhHHHH--
Confidence 444566777777765 467777777777643332 11222 35556667777776 677777666544444443
Q ss_pred HHHhcCCCEEEEccCCCC
Q 031262 91 QVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 91 ~a~~~~~dliVmG~~~~~ 108 (162)
.+. +|++-+|++.-.
T Consensus 108 --~~~-vd~~kIga~~~~ 122 (266)
T PRK13398 108 --ADY-ADMLQIGSRNMQ 122 (266)
T ss_pred --HHh-CCEEEECccccc
Confidence 444 699999998643
No 219
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=37.49 E-value=2.4e+02 Score=23.52 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=26.8
Q ss_pred chhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEE
Q 031262 84 KLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGV 138 (162)
Q Consensus 84 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv 138 (162)
....+.+.+++.++|+++=|+++ .++.++..+|.+-+
T Consensus 383 ~~~e~~~~i~~~~pDllig~~~~------------------~~~a~k~gip~~~~ 419 (457)
T TIGR01284 383 NELELEEIIEKYKPDIILTGIRE------------------GELAKKLGVPYINI 419 (457)
T ss_pred CHHHHHHHHHhcCCCEEEecCCc------------------chhhhhcCCCEEEc
Confidence 35677788888999998866654 45567777777655
No 220
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=37.27 E-value=1.6e+02 Score=23.09 Aligned_cols=50 Identities=8% Similarity=0.019 Sum_probs=34.3
Q ss_pred cchHHHHHHHHhHHHhCCCCeEEEEEEecC-chhHHHHHHHhcCCCEEEEccC
Q 031262 54 CCPYLANSLGSLCKACKPEVEVEALVIQGP-KLGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~-~~~~I~~~a~~~~~dliVmG~~ 105 (162)
......+.+.+..++ .+.++.....+.. .+..+++.+...++|.||.+.-
T Consensus 17 ~~~~~~~~~~~~l~~--~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GG 67 (301)
T COG1597 17 KAKKLLREVEELLEE--AGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGG 67 (301)
T ss_pred chhhHHHHHHHHHHh--cCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecC
Confidence 345555555555555 5777776666655 5778888888779999988763
No 221
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=37.07 E-value=1.8e+02 Score=21.91 Aligned_cols=44 Identities=14% Similarity=0.202 Sum_probs=30.5
Q ss_pred hHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 86 GTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
+.+++..+..++|..++|.|.... |.. .....++.+.+|+|...
T Consensus 60 ~~~~~~ln~~g~d~~~~GNHefd~------G~~----~l~~~~~~~~~~~l~aN 103 (257)
T cd07408 60 ETIIKIMNAVGYDAVTPGNHEFDY------GLD----RLKELSKEADFPFLSAN 103 (257)
T ss_pred cHHHHHHHhcCCcEEccccccccC------CHH----HHHHHHhhCCCCEEEEE
Confidence 577888889999999999987431 111 11456777888888553
No 222
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=37.06 E-value=37 Score=27.33 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=26.8
Q ss_pred CCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCCC
Q 031262 97 VSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSKG 144 (162)
Q Consensus 97 ~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~~ 144 (162)
.|+||+|+- ++|++. -+++.+..--||||-+++.-
T Consensus 2 fd~lIVGaG--------lsG~V~-----A~~a~~~gk~VLIvekR~HI 36 (374)
T COG0562 2 FDYLIVGAG--------LSGAVI-----AEVAAQLGKRVLIVEKRNHI 36 (374)
T ss_pred CcEEEECCc--------hhHHHH-----HHHHHHcCCEEEEEeccccC
Confidence 488999983 467777 56888889999999886443
No 223
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=36.88 E-value=44 Score=28.38 Aligned_cols=10 Identities=10% Similarity=0.335 Sum_probs=6.1
Q ss_pred CCCEEEEEEE
Q 031262 29 KGDLLTLLHV 38 (162)
Q Consensus 29 ~~~~l~l~hv 38 (162)
-..-+.++|.
T Consensus 23 i~~~~~i~H~ 32 (513)
T CHL00076 23 FKNVHAIMHA 32 (513)
T ss_pred cCCcEEEeeC
Confidence 3455677775
No 224
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=36.82 E-value=87 Score=23.37 Aligned_cols=116 Identities=5% Similarity=-0.060 Sum_probs=62.7
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI 80 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~ 80 (162)
|.++|++++-+|-.+.++.+..-.+. + +.++.++-.-... .+ +....-.....+-.+..+.
T Consensus 18 ~~k~IllgVtGSIAAyk~~~lvr~L~-~-g~~V~VvmT~~A~-~F----------------I~p~~l~~~~~v~td~~~~ 78 (209)
T PLN02496 18 RKPRILLAASGSVAAIKFGNLCHCFS-E-WAEVRAVVTKASL-HF----------------IDRASLPKDVTLYTDEDEW 78 (209)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHhc-C-CCeEEEEEChhHh-hh----------------cCHHHcCCCCcEEeCcccc
Confidence 46899999999999999988776654 3 6676555432111 11 1100000000010000000
Q ss_pred -----ecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhh--CCceEEEEec
Q 031262 81 -----QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKK--ADCLTVGVRK 140 (162)
Q Consensus 81 -----~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~--~~~pVlvv~~ 140 (162)
.+++ ..=++.++ .+|++|+.--..+.+.++-.|-..+ ....++.- .++||++++.
T Consensus 79 ~~~~~~~~~-~~HI~La~--wAD~~vVaPaTaNtlaKiA~GiaDn--lltt~l~a~~~~~Pv~iaPa 140 (209)
T PLN02496 79 SSWNKIGDS-VLHIELRR--WADVMVIAPLSANTLGKIAGGLCDN--LLTCIVRAWDYSKPLFVAPA 140 (209)
T ss_pred cccccCCCC-cchhHhhh--hhCEEEEEeCCHHHHHHHHcccCCc--HHHHHHHHcCCCCCEEEEeC
Confidence 1112 11234444 5799999888777777777775552 11233343 3799999986
No 225
>PRK08349 hypothetical protein; Validated
Probab=36.79 E-value=1.6e+02 Score=21.24 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=27.1
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeC
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVP 40 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~ 40 (162)
+++++++.|-.+|--++-++.+ .|.++..+|+..
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~----~g~~v~av~~d~ 34 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLR----RGVEVYPVHFRQ 34 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHH----cCCeEEEEEEeC
Confidence 4689999999999888866554 467899999964
No 226
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=36.61 E-value=96 Score=19.41 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=25.9
Q ss_pred HHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCC
Q 031262 60 NSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 60 ~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
+.+++.+++ .|+++.+........+.-+...+-..+|++++.....
T Consensus 18 e~L~~aA~~--~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~~ 63 (85)
T TIGR00829 18 EALEKAAKK--RGWEVKVETQGSVGAQNALTAEDIAAADGVILAADRE 63 (85)
T ss_pred HHHHHHHHH--CCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccCC
Confidence 556666666 6766766664333223333222223779999887654
No 227
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=36.58 E-value=1.6e+02 Score=23.40 Aligned_cols=66 Identities=20% Similarity=0.328 Sum_probs=36.5
Q ss_pred HHHHHhHHHhCCCCeEEEEE-EecC--c-h---hHHHHHHHhcCCCEEE-EccCCCCcccccccccCCcchhHHHhhhhC
Q 031262 60 NSLGSLCKACKPEVEVEALV-IQGP--K-L---GTVMSQVRKLEVSVLV-LGQKKHSAFINCFCGTSSSEEFVDQCIKKA 131 (162)
Q Consensus 60 ~~~~~~~~~~~~~v~~~~~v-~~g~--~-~---~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~ 131 (162)
+.+.+..++ .++++.+.. ..++ + . +.+.+.+++ ++|.|| +|. ||+. ++++.+.-..
T Consensus 40 ~~v~~~l~~--~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGG-----------Gs~~--D~aK~vA~~~ 103 (348)
T cd08175 40 KKVEALLKR--AGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGS-----------GTIN--DITKYVSYKT 103 (348)
T ss_pred HHHHHHHHH--CCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECC-----------cHHH--HHHHHHHHhc
Confidence 445555544 455554333 3343 4 3 344555555 889877 554 2222 3335555556
Q ss_pred CceEEEEecC
Q 031262 132 DCLTVGVRKQ 141 (162)
Q Consensus 132 ~~pVlvv~~~ 141 (162)
.+|++.||-.
T Consensus 104 ~~p~i~IPTT 113 (348)
T cd08175 104 GIPYISVPTA 113 (348)
T ss_pred CCCEEEecCc
Confidence 7899999875
No 228
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=36.24 E-value=2.1e+02 Score=22.29 Aligned_cols=82 Identities=1% Similarity=-0.143 Sum_probs=46.1
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchh--HHHHHHHhcCCCEEEEccCCCCcc-cccccccCCcchhHHHhhhhC-
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLG--TVMSQVRKLEVSVLVLGQKKHSAF-INCFCGTSSSEEFVDQCIKKA- 131 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~--~I~~~a~~~~~dliVmG~~~~~~~-~~~~~Gs~~~~~~~~~v~~~~- 131 (162)
++..+.++...+.....+.+-.-+...+..+ .+.+.|++.++|-+++........ .+-+.. .- ..++..+
T Consensus 53 ~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~-~f-----~~ia~a~~ 126 (294)
T TIGR02313 53 EERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYD-HF-----AEVADAVP 126 (294)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHH-HH-----HHHHHhcc
Confidence 3444444444444334444443333223334 456889999999999998643222 111111 11 4577788
Q ss_pred CceEEEEecCCC
Q 031262 132 DCLTVGVRKQSK 143 (162)
Q Consensus 132 ~~pVlvv~~~~~ 143 (162)
+.||++..-+..
T Consensus 127 ~lpv~iYn~P~~ 138 (294)
T TIGR02313 127 DFPIIIYNIPGR 138 (294)
T ss_pred CCCEEEEeCchh
Confidence 799999876544
No 229
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=35.90 E-value=43 Score=23.21 Aligned_cols=39 Identities=10% Similarity=0.219 Sum_probs=25.6
Q ss_pred hhHHHHHH---HhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEE
Q 031262 85 LGTVMSQV---RKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGV 138 (162)
Q Consensus 85 ~~~I~~~a---~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv 138 (162)
.|.+.+.+ ..+ +|+||+-...++. . +.+..++.|||+=-
T Consensus 81 ~Esl~Dtar~ls~~-~D~iv~R~~~~~~---------~-----~~~a~~~~vPVINa 122 (142)
T PF02729_consen 81 GESLEDTARVLSRY-VDAIVIRHPSHGA---------L-----EELAEHSSVPVINA 122 (142)
T ss_dssp SSEHHHHHHHHHHH-CSEEEEEESSHHH---------H-----HHHHHHCSSEEEEE
T ss_pred CCCHHHHHHHHHHh-hheEEEEeccchH---------H-----HHHHHhccCCeEcC
Confidence 44444444 455 8999998654331 2 67889999999743
No 230
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=35.77 E-value=2.2e+02 Score=22.49 Aligned_cols=82 Identities=9% Similarity=0.086 Sum_probs=46.4
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecC----chhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGP----KLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKA 131 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~----~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~ 131 (162)
+.+.+-++...+....++.+.+.+..|- ....+.+.+++.++|.|.+..+.+. +...|.....+.+..+-+..
T Consensus 117 ~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~---~~y~g~~~~~~~i~~ik~~~ 193 (312)
T PRK10550 117 ELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE---DGYRAEHINWQAIGEIRQRL 193 (312)
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc---cCCCCCcccHHHHHHHHhhc
Confidence 3344444554444322455555554442 2557778888999999999655432 22334322223336666777
Q ss_pred CceEEEEec
Q 031262 132 DCLTVGVRK 140 (162)
Q Consensus 132 ~~pVlvv~~ 140 (162)
++||+....
T Consensus 194 ~iPVi~nGd 202 (312)
T PRK10550 194 TIPVIANGE 202 (312)
T ss_pred CCcEEEeCC
Confidence 888887644
No 231
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=35.65 E-value=2e+02 Score=22.52 Aligned_cols=44 Identities=11% Similarity=0.155 Sum_probs=27.5
Q ss_pred hhHHHHHHHhcCCCEEE-EccCCCCcccccccccCCcchhHHHhhhhC--CceEEEEecC
Q 031262 85 LGTVMSQVRKLEVSVLV-LGQKKHSAFINCFCGTSSSEEFVDQCIKKA--DCLTVGVRKQ 141 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~--~~pVlvv~~~ 141 (162)
.+.+.+.+++.++|.|| +|.- |+. ++++.+.-.. ..|++.|+-.
T Consensus 67 v~~~~~~~~~~~~d~IIaiGGG-----------s~~--D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 67 VKEAVERARAAEVDAVIAVGGG-----------STL--DTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred HHHHHHHHHhcCcCEEEEeCCc-----------hHH--HHHHHHHHHhcCCCCEEEEeCC
Confidence 56677777888899988 6642 222 2223333333 7899999864
No 232
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=35.23 E-value=2.6e+02 Score=23.08 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=33.3
Q ss_pred EEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 77 ALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 77 ~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
..+.++.....+.+.+++.++|+++=++++ .++.++..+|.+.+...
T Consensus 350 ~~i~~~~d~~e~~~~i~~~~pDliig~~~~------------------~~~a~k~giP~~~~~~~ 396 (421)
T cd01976 350 TLLYDDVTHYELEEFVKRLKPDLIGSGIKE------------------KYVFQKMGIPFRQMHSW 396 (421)
T ss_pred eEEEcCCCHHHHHHHHHHhCCCEEEecCcc------------------hhhhhhcCCCeEeCCcc
Confidence 344455456778899999999999866553 55677888888766543
No 233
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=35.20 E-value=1.8e+02 Score=21.23 Aligned_cols=71 Identities=14% Similarity=0.093 Sum_probs=39.8
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEc----cCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLG----QKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG----~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
-+.+.++.+... .+..+.. +..-+..+...+.+++.++|+++|. -.+.++. +..+.+.++.+
T Consensus 11 ~~~~gl~~~L~~--~~~~~~v-v~~~~~~~~~~~~~~~~~pDlvLlDl~~~l~~~~g~-----------~~i~~i~~~~p 76 (207)
T PRK15411 11 YTRLGLTGYLLS--RGVKKRE-INDIETVDDLAIACDSLRPSVVFINEDCFIHDASNS-----------QRIKQIINQHP 76 (207)
T ss_pred HHHHHHHHHHHh--CCCcceE-EEecCCHHHHHHHHhccCCCEEEEeCcccCCCCChH-----------HHHHHHHHHCC
Confidence 344555555544 1222222 2333445555667788889999999 3333221 12266666554
Q ss_pred -ceEEEEecC
Q 031262 133 -CLTVGVRKQ 141 (162)
Q Consensus 133 -~pVlvv~~~ 141 (162)
++++++-..
T Consensus 77 ~~~iivlt~~ 86 (207)
T PRK15411 77 NTLFIVFMAI 86 (207)
T ss_pred CCeEEEEECC
Confidence 898888654
No 234
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=35.08 E-value=51 Score=23.18 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=20.5
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
.+.|.+.+++.++|+|++|....+
T Consensus 72 a~al~~~i~~~~p~~Vl~~~t~~g 95 (168)
T cd01715 72 APALVALAKKEKPSHILAGATSFG 95 (168)
T ss_pred HHHHHHHHHhcCCCEEEECCCccc
Confidence 677888889989999999998654
No 235
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=34.97 E-value=1.4e+02 Score=24.09 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHH
Q 031262 14 HSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVR 93 (162)
Q Consensus 14 ~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~ 93 (162)
.+++.+++|+++|.+.+.+++++|=-.... . ..-..+.+++..++ .+++.++...+ ......++.--
T Consensus 164 ~~eRI~r~AF~~A~~r~~~Vt~v~KaNvlk-t---------~glf~~~~~eva~~-yP~I~~~~~~v-Da~~~~Lv~~P- 230 (349)
T TIGR00169 164 EIERIARVAFEMARKRRKKVTSVDKANVLE-S---------SRLWRKTVEEIAKE-YPDVELEHQYI-DNAAMQLVKSP- 230 (349)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEECCcccc-h---------hHHHHHHHHHHHhh-CCCceEEeeeH-HHHHHHHHhCc-
Confidence 567788888888876666888888543332 1 12233344455544 36676665543 11233333333
Q ss_pred hcCCCEEEEcc
Q 031262 94 KLEVSVLVLGQ 104 (162)
Q Consensus 94 ~~~~dliVmG~ 104 (162)
.+.|.||+..
T Consensus 231 -~~fDViv~~N 240 (349)
T TIGR00169 231 -TQFDVVVTGN 240 (349)
T ss_pred -cCceEEEEcC
Confidence 3467655544
No 236
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=34.70 E-value=81 Score=24.62 Aligned_cols=45 Identities=9% Similarity=0.205 Sum_probs=32.9
Q ss_pred HHHHHhHHHhCCCCeEEEEEEecC----chhHHHHHHHhcCCCEEEEccCC
Q 031262 60 NSLGSLCKACKPEVEVEALVIQGP----KLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 60 ~~~~~~~~~~~~~v~~~~~v~~g~----~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
+.++.+.+. .++....+-...+ ..+.+.+..++.++|+||+...-
T Consensus 128 ~dl~~~v~~--~~IPfhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLARYM 176 (287)
T COG0788 128 DDLRPLVER--FDIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLARYM 176 (287)
T ss_pred HHHHHHHHH--cCCCeeeccCCCCcchHHHHHHHHHHHHhCCCEEeehhhH
Confidence 345666666 5677765555443 27889999999999999998863
No 237
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=34.70 E-value=35 Score=29.30 Aligned_cols=21 Identities=14% Similarity=0.445 Sum_probs=19.7
Q ss_pred hhHHHHHHHhcCCCEEEEccC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~ 105 (162)
.+.|+..|+++++|||++|..
T Consensus 41 FeEIl~iA~e~~VDmiLlGGD 61 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGD 61 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCc
Confidence 799999999999999999984
No 238
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=34.56 E-value=60 Score=21.73 Aligned_cols=42 Identities=12% Similarity=0.255 Sum_probs=29.5
Q ss_pred HHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 92 VRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 92 a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
.-+.+++.||+|+-..+.+. ++.-+ ....++-.|-|++.|-+
T Consensus 57 ~lee~~E~ivvGTG~~G~l~---l~~ea-----~e~~r~k~~~vi~~pT~ 98 (121)
T COG1504 57 LLEEGPEVIVVGTGQSGMLE---LSEEA-----REFFRKKGCEVIELPTP 98 (121)
T ss_pred HHhcCCcEEEEecCceeEEE---eCHHH-----HHHHHhcCCeEEEeCCH
Confidence 33468999999996655332 33334 77788889999988764
No 239
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=34.55 E-value=48 Score=22.70 Aligned_cols=26 Identities=0% Similarity=0.033 Sum_probs=22.0
Q ss_pred CchhHHHHHHHhcCCCEEEEccCCCC
Q 031262 83 PKLGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 83 ~~~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
-+.+.+++.|.++++|+|.+++--.+
T Consensus 37 v~~e~~v~aa~~~~adiVglS~L~t~ 62 (128)
T cd02072 37 SPQEEFIDAAIETDADAILVSSLYGH 62 (128)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccccC
Confidence 46899999999999999999885433
No 240
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=34.50 E-value=1.1e+02 Score=23.22 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=19.4
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEe
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
+++.|++|..+ .+.+++|+-.+ +..+-++-|.
T Consensus 12 ~~livaLD~~~-~~~~~~~~~~~----~~~~~~~Kvg 43 (240)
T COG0284 12 RRLIVALDVPT-EEEALAFVDKL----GPTVDFVKVG 43 (240)
T ss_pred cCeEEEECCCC-HHHHHHHHHHh----hccccEEEEc
Confidence 45999999985 45555555544 3344444444
No 241
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=34.39 E-value=2.2e+02 Score=22.00 Aligned_cols=53 Identities=8% Similarity=-0.077 Sum_probs=32.9
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhC-CceEEEEecCCC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKA-DCLTVGVRKQSK 143 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~-~~pVlvv~~~~~ 143 (162)
.-...+.+++.++|-+++-........ .-+ -..- +.+...+ ++||++...+..
T Consensus 85 ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i-~~~~-----~~v~~a~~~lpi~iYn~P~~ 139 (288)
T cd00954 85 SQELAKHAEELGYDAISAITPFYYKFSFEEI-KDYY-----REIIAAAASLPMIIYHIPAL 139 (288)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCCHHHH-HHHH-----HHHHHhcCCCCEEEEeCccc
Confidence 345557889999999998775432111 100 0111 4567778 799999877654
No 242
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=34.09 E-value=1.5e+02 Score=23.94 Aligned_cols=78 Identities=14% Similarity=0.228 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHhccCC-CCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHH
Q 031262 14 HSKHAMMWALTHVTNK-GDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQV 92 (162)
Q Consensus 14 ~s~~al~~A~~~a~~~-~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a 92 (162)
.+++.+++|.++|.+. ..+++++|=-..... ..-+.+.+++..++..+++.++...+ ......++.-=
T Consensus 161 ~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~----------~~lf~~~~~eva~~~yp~I~~~~~~v-D~~~~~Lv~~P 229 (348)
T PF00180_consen 161 GIERIARFAFEYARKRGRKKVTVVHKANVLKS----------TDLFREVFQEVAKQEYPDIEVEHMLV-DAAAMQLVKNP 229 (348)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEESTTTSTT----------HHHHHHHHHHHHHHTHTTSEEEEEEH-HHHHHHHHHSG
T ss_pred hhhHHHHHHHHHHHHhCCceEEEEeccchhHH----------HHHHHHHHHHHHHhhcceeEeeeeec-hhhhheeecCC
Confidence 5688889999999887 688999996443322 23555667777772237788876664 22234444434
Q ss_pred HhcCCCEEEEcc
Q 031262 93 RKLEVSVLVLGQ 104 (162)
Q Consensus 93 ~~~~~dliVmG~ 104 (162)
+ +.|.||+..
T Consensus 230 ~--~fdViv~~N 239 (348)
T PF00180_consen 230 E--QFDVIVTPN 239 (348)
T ss_dssp G--GESEEEEEH
T ss_pred c--ceeEEeecc
Confidence 4 458777655
No 243
>PRK06801 hypothetical protein; Provisional
Probab=34.09 E-value=46 Score=26.05 Aligned_cols=55 Identities=9% Similarity=-0.007 Sum_probs=39.1
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCCCcccc-cccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKHSAFIN-CFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
-....++++.|++.+.-+|+..+.+...... ..+.... ..+++++++||.+==..
T Consensus 28 ~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~-----~~~a~~~~vpV~lHlDH 83 (286)
T PRK06801 28 SHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAV-----KFEAARHDIPVVLNLDH 83 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHH-----HHHHHHCCCCEEEECCC
Confidence 3448999999999999999988876543222 2233444 78888999998775443
No 244
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=34.09 E-value=2.5e+02 Score=22.57 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=27.2
Q ss_pred HhcCCCEEEEccCCC---CcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 93 RKLEVSVLVLGQKKH---SAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 93 ~~~~~dliVmG~~~~---~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
++.++|.+++|+..- +..-+. .|+.. + --+.++.++||+++-+
T Consensus 222 ~~~~vd~VivGAd~v~~nG~v~nk-iGT~~---l-A~~Ak~~~vPfyV~a~ 267 (331)
T TIGR00512 222 KHGEVDAVIVGADRIAANGDTANK-IGTYQ---L-AVLAKHHGVPFYVAAP 267 (331)
T ss_pred cccCCCEEEEcccEEecCCCEeeh-hhHHH---H-HHHHHHhCCCEEEecc
Confidence 355799999999863 222221 34333 1 3456777999999855
No 245
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=33.83 E-value=2.3e+02 Score=22.61 Aligned_cols=66 Identities=9% Similarity=0.178 Sum_probs=37.4
Q ss_pred HHHHHHhHHHhCCCCeEEEEEEecCc----hhHHHHHHHhcCCCEEE-EccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 59 ANSLGSLCKACKPEVEVEALVIQGPK----LGTVMSQVRKLEVSVLV-LGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 59 ~~~~~~~~~~~~~~v~~~~~v~~g~~----~~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
.+.+++.... .+ ++...+ .+++ .+.+.+.+++.++|.|| +|.- ++. +++..+.-...+
T Consensus 50 ~~~l~~~l~~--~~-~~~~~~-~~~~t~~~v~~~~~~~~~~~~d~IIaiGGG-----------sv~--D~ak~vA~~rgi 112 (350)
T PRK00843 50 GDRVEENLED--AG-DVEVVI-VDEATMEEVEKVEEKAKDVNAGFLIGVGGG-----------KVI--DVAKLAAYRLGI 112 (350)
T ss_pred HHHHHHHHHh--cC-CeeEEe-CCCCCHHHHHHHHHHhhccCCCEEEEeCCc-----------hHH--HHHHHHHHhcCC
Confidence 3445554444 23 444333 4444 45677777788899877 5542 111 222555555678
Q ss_pred eEEEEecC
Q 031262 134 LTVGVRKQ 141 (162)
Q Consensus 134 pVlvv~~~ 141 (162)
|++.||-.
T Consensus 113 p~I~IPTT 120 (350)
T PRK00843 113 PFISVPTA 120 (350)
T ss_pred CEEEeCCC
Confidence 88888764
No 246
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=33.77 E-value=2.8e+02 Score=23.05 Aligned_cols=95 Identities=15% Similarity=0.115 Sum_probs=49.6
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
.+++++..+.+ .++.++..++...|.++..+..... ..+ .+.+.......+ ..+..
T Consensus 317 gkrvai~~~~~----~~~~~~~~ll~elGm~v~~~~~~~~------------~~~----~~~~~l~~l~~~----~~~v~ 372 (443)
T TIGR01862 317 GKRVCLYIGGS----RLWHWIGSAEEDLGMEVVAVGYEFA------------HED----DYEKTMKRMGEG----TLLID 372 (443)
T ss_pred CCeEEEECCch----hHHHHHHHHHHHCCCEEEEeccccc------------cHH----HHHHHHHhCCCc----eEEec
Confidence 46777766654 3344555455567777666521100 111 222222222111 22222
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEE
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGV 138 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv 138 (162)
+-....+.+.+++.++|+++=++++ .++.++.++|.+-+
T Consensus 373 ~~~~~e~~~~i~~~~pdllig~s~~------------------~~~A~~lgip~~~~ 411 (443)
T TIGR01862 373 DPNELEFEEILEKLKPDIIFSGIKE------------------KFVAQKLGVPYRQM 411 (443)
T ss_pred CCCHHHHHHHHHhcCCCEEEEcCcc------------------hhhhhhcCCCeEec
Confidence 3235677788888899987755544 44556667776644
No 247
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=33.61 E-value=75 Score=25.42 Aligned_cols=52 Identities=10% Similarity=0.138 Sum_probs=35.4
Q ss_pred chhHHHHHHHhcCCCEEEEccCCC-Cc-ccccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 84 KLGTVMSQVRKLEVSVLVLGQKKH-SA-FINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 84 ~~~~I~~~a~~~~~dliVmG~~~~-~~-~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
+....++.++ ++|+||+|-... ++ +..+++.... + .++++.-|++-+.+-+.
T Consensus 179 a~~eaveAI~--~AD~IviGPgSl~TSIlP~Lllp~I~-----e-aLr~~~ap~i~v~n~~~ 232 (323)
T COG0391 179 AAPEAVEAIK--EADLIVIGPGSLFTSILPILLLPGIA-----E-ALRETVAPIVYVCNLMT 232 (323)
T ss_pred CCHHHHHHHH--hCCEEEEcCCccHhhhchhhchhHHH-----H-HHHhCCCCEEEeccCCC
Confidence 3678888888 779999998653 22 3344444433 4 55669999999977544
No 248
>PRK02929 L-arabinose isomerase; Provisional
Probab=33.59 E-value=2.1e+02 Score=24.38 Aligned_cols=75 Identities=5% Similarity=0.020 Sum_probs=44.6
Q ss_pred cchHHHHHHHHhHHHhC--CCCeEEEEEEec--CchhHHHHHHHhcC----CCEEEEccCCCCcccccccccCCcchhHH
Q 031262 54 CCPYLANSLGSLCKACK--PEVEVEALVIQG--PKLGTVMSQVRKLE----VSVLVLGQKKHSAFINCFCGTSSSEEFVD 125 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~--~~v~~~~~v~~g--~~~~~I~~~a~~~~----~dliVmG~~~~~~~~~~~~Gs~~~~~~~~ 125 (162)
..+++.+..+++++... ..+.+++.. .+ ...+.|.+..++.+ +|.|++-.+..++-+ ..-
T Consensus 23 ~l~~~~~~~~~i~~~l~~~~~~~~~vv~-~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~-----------~~i 90 (499)
T PRK02929 23 TLRQVAEHAEEIVDGLNASGKLPVKIVL-KPVLTTPDEITAVCREANYDDNCAGVITWMHTFSPAK-----------MWI 90 (499)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCeEEEE-cCccCCHHHHHHHHHHccccCCCcEEEEccCCCchHH-----------HHH
Confidence 44555555566666542 224455442 22 22455555555555 999999887654322 125
Q ss_pred HhhhhCCceEEEEec
Q 031262 126 QCIKKADCLTVGVRK 140 (162)
Q Consensus 126 ~v~~~~~~pVlvv~~ 140 (162)
.+++..++|||+...
T Consensus 91 ~~~~~l~~PvL~~~~ 105 (499)
T PRK02929 91 RGLSALQKPLLHLHT 105 (499)
T ss_pred HHHHHcCCCEEEEec
Confidence 567888999999976
No 249
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=33.52 E-value=1.2e+02 Score=23.19 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=32.0
Q ss_pred HHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 89 MSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 89 ~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
....+++++|.||.=..|..+... + -...+...+||++++++..
T Consensus 183 ~aL~~~~~i~~lVtK~SG~~g~~e---------K--i~AA~~lgi~vivI~RP~~ 226 (248)
T PRK08057 183 RALLRQHRIDVVVTKNSGGAGTEA---------K--LEAARELGIPVVMIARPAL 226 (248)
T ss_pred HHHHHHcCCCEEEEcCCCchhhHH---------H--HHHHHHcCCeEEEEeCCCC
Confidence 456789999999988876442221 2 2457778999999988765
No 250
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=33.37 E-value=39 Score=26.41 Aligned_cols=55 Identities=9% Similarity=0.045 Sum_probs=38.7
Q ss_pred ecCchhHHHHHHHhcCCCEEEEccCCCCcccc-cccccCCcchhHHHhhhhCCceEEEEec
Q 031262 81 QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFIN-CFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 81 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
..+-..++++.|++.+.-+|+.-+.+.-.... -.+.... ..+++++++||.+==.
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~-----~~~A~~~~VPV~lHLD 82 (284)
T PRK09195 27 NLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIV-----SAAAKQYHHPLALHLD 82 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHH-----HHHHHHCCCCEEEECC
Confidence 44558999999999999999988775422211 1233334 7888999999887433
No 251
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=33.36 E-value=2.1e+02 Score=21.88 Aligned_cols=104 Identities=12% Similarity=0.140 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhccCCCCEEEEEEE-eCCCCCCCCCCCccccchHHH-------HHHHHhHHHhCCCCeEEEEEEecC---
Q 031262 15 SKHAMMWALTHVTNKGDLLTLLHV-VPPPKPNTSHHDSSACCPYLA-------NSLGSLCKACKPEVEVEALVIQGP--- 83 (162)
Q Consensus 15 s~~al~~A~~~a~~~~~~l~l~hv-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~v~~g~--- 83 (162)
....+..++++|++.+-.+- .|- +|....+ ......-..+++. ..++.++.. .+.++..+-..|-
T Consensus 40 Dp~~M~~tv~lA~~~gV~iG-AHPsyPD~~gF-GRr~m~~s~~el~~~v~yQigaL~~~a~~--~g~~l~hVKPHGALYn 115 (242)
T PF03746_consen 40 DPETMRRTVRLAKEHGVAIG-AHPSYPDREGF-GRRSMDISPEELRDSVLYQIGALQAIAAA--EGVPLHHVKPHGALYN 115 (242)
T ss_dssp -HHHHHHHHHHHHHTT-EEE-EE---S-TTTT-T-S-----HHHHHHHHHHHHHHHHHHHHH--TT--EEEE---HHHHH
T ss_pred CHHHHHHHHHHHHHcCCEec-cCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHH--cCCeeEEecccHHHHH
Confidence 44566777777776664432 332 2222112 1111111223333 334556666 6777776655552
Q ss_pred -------chhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEE
Q 031262 84 -------KLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVG 137 (162)
Q Consensus 84 -------~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlv 137 (162)
.++.|++.+++.+.++.++|..+ |.. ....+....|++-
T Consensus 116 ~~~~d~~lA~~i~~ai~~~~~~l~l~~~ag----------s~~-----~~~A~~~Gl~~~~ 161 (242)
T PF03746_consen 116 MAAKDEELARAIAEAIKAFDPDLPLYGLAG----------SEL-----EKAAKELGLPVVF 161 (242)
T ss_dssp HHHH-HHHHHHHHHHHHHH-TT-EEEEETT----------SHH-----HHHHHHCT--EEE
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcEEEEcCC----------cHH-----HHHHHHCCCcEEE
Confidence 27899999999999999999863 333 5667777777664
No 252
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=33.29 E-value=2.2e+02 Score=21.83 Aligned_cols=78 Identities=9% Similarity=-0.127 Sum_probs=42.4
Q ss_pred HHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEE
Q 031262 59 ANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTV 136 (162)
Q Consensus 59 ~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVl 136 (162)
.+.++...+.....+.+-.-+...+. .-...+.+++.++|-+++..........-=+-..- +.+...++.|++
T Consensus 57 ~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~-----~~ia~~~~~pi~ 131 (289)
T PF00701_consen 57 KELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYF-----RAIADATDLPII 131 (289)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHH-----HHHHHHSSSEEE
T ss_pred HHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHH-----HHHHhhcCCCEE
Confidence 33334444433345555444433333 44556778899999998876543221110000111 567788899999
Q ss_pred EEecC
Q 031262 137 GVRKQ 141 (162)
Q Consensus 137 vv~~~ 141 (162)
+...+
T Consensus 132 iYn~P 136 (289)
T PF00701_consen 132 IYNNP 136 (289)
T ss_dssp EEEBH
T ss_pred EEECC
Confidence 98765
No 253
>PF13155 Toprim_2: Toprim-like
Probab=33.29 E-value=58 Score=20.25 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=19.8
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCC
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKG 30 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~ 30 (162)
++|.+++|.++....+.+...+.....+
T Consensus 48 ~~i~l~~DnD~aG~~~~~~~~~~l~~~~ 75 (96)
T PF13155_consen 48 KKIVLAFDNDEAGRKAAEKLQKELKEEG 75 (96)
T ss_pred CcEEEEeCCCHHHHHHHHHHHHHHHhhC
Confidence 4678888888877777777776665443
No 254
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=33.16 E-value=46 Score=27.61 Aligned_cols=46 Identities=26% Similarity=0.337 Sum_probs=35.5
Q ss_pred hcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCCCCCcE
Q 031262 94 KLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSKGMGGY 148 (162)
Q Consensus 94 ~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~~~~~~ 148 (162)
-.++-.+|+|--- +.++++|.+. ++...+++||+=+.+.....||.
T Consensus 8 f~~~kVLVvGDvm---LDrY~~G~~~------RISPEAPVPVv~v~~e~~rlGGA 53 (467)
T COG2870 8 FKQAKVLVVGDVM---LDRYWYGKVS------RISPEAPVPVVKVEKEEERLGGA 53 (467)
T ss_pred hcCCcEEEEccee---eeeecccccc------ccCCCCCCceEEecccccccccH
Confidence 3467889998764 5577888774 78999999999998876666654
No 255
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=33.15 E-value=53 Score=25.61 Aligned_cols=55 Identities=7% Similarity=-0.033 Sum_probs=37.2
Q ss_pred ecCchhHHHHHHHhcCCCEEEEccCCCCcccc-cccccCCcchhHHHhhhhCCceEEEEec
Q 031262 81 QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFIN-CFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 81 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
.-.-..++++.|++.+.-+|+..+.+.-.... -+++... ...++++++||.+==.
T Consensus 27 n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~-----~~~a~~~~vpv~lHlD 82 (281)
T PRK06806 27 NMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLM-----VAAAKQAKVPVAVHFD 82 (281)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHH-----HHHHHHCCCCEEEECC
Confidence 33458899999999999999988775432211 2344444 6778888999877433
No 256
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.02 E-value=2.1e+02 Score=21.34 Aligned_cols=73 Identities=5% Similarity=-0.090 Sum_probs=39.5
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
..+.+.+++.+.+ .|..+.+.-..+++ ....++.+...++|-|++.......... +.++ +.....
T Consensus 15 ~~~~~gi~~~~~~--~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~----------~i~~-~~~~~i 81 (272)
T cd06313 15 AQGKQAADEAGKL--LGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTE----------AVQK-AIARGI 81 (272)
T ss_pred HHHHHHHHHHHHH--cCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHH----------HHHH-HHHCCC
Confidence 4555666666666 45555444333344 3345555667889988885432111111 1122 344688
Q ss_pred eEEEEecC
Q 031262 134 LTVGVRKQ 141 (162)
Q Consensus 134 pVlvv~~~ 141 (162)
||+++...
T Consensus 82 PvV~~~~~ 89 (272)
T cd06313 82 PVIDMGTL 89 (272)
T ss_pred cEEEeCCC
Confidence 99988654
No 257
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=32.53 E-value=1.2e+02 Score=18.76 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=30.8
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
.+.|.+..++.+++.|.+|..|.- ......+.. .++.+.+-++.++||.+.....
T Consensus 40 ~~~l~~~i~~~~~~~i~Ig~pg~v--~g~~~~~~~-~~l~~~l~~~~~~pv~~~nDa~ 94 (99)
T smart00732 40 AARLKKLIKKYQPDLIVIGLPLNM--NGTASRETE-EAFAELLKERFNLPVVLVDERL 94 (99)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcCC--CCCcCHHHH-HHHHHHHHHhhCCcEEEEeCCc
Confidence 456666666667888888876532 000000000 2333555566789999987643
No 258
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=32.51 E-value=2.8e+02 Score=22.75 Aligned_cols=34 Identities=9% Similarity=0.112 Sum_probs=22.4
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEe
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
|||+||+. +.++.+...++.|.+ .|-++++++..
T Consensus 1 ~~k~iLi~-g~g~~a~~i~~aa~~----~G~~vv~~~~~ 34 (451)
T PRK08591 1 MFDKILIA-NRGEIALRIIRACKE----LGIKTVAVHST 34 (451)
T ss_pred CcceEEEE-CCCHHHHHHHHHHHH----cCCeEEEEcCh
Confidence 89999998 666666666554443 46666665543
No 259
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=32.39 E-value=2.8e+02 Score=22.70 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=26.6
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
.+++++++.+-.+|--|.-...+ .|.++..+|+.
T Consensus 180 ~gkvlvllSGGiDSpVAa~ll~k----rG~~V~~v~f~ 213 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAFLMMK----RGVEVIPVHIY 213 (381)
T ss_pred CCcEEEEEeCChHHHHHHHHHHH----cCCeEEEEEEE
Confidence 36899999998888776655544 48899999995
No 260
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=32.35 E-value=46 Score=26.01 Aligned_cols=56 Identities=5% Similarity=-0.005 Sum_probs=39.6
Q ss_pred ecCchhHHHHHHHhcCCCEEEEccCCCCcccc-cccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 81 QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFIN-CFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 81 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
.-+-..++++.|++.+.-+|+.-+.+.-.... ..+.... ..+++++++||.+==..
T Consensus 25 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~-----~~~a~~~~VPValHLDH 81 (282)
T TIGR01858 25 NLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALC-----SAASTTYNMPLALHLDH 81 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHH-----HHHHHHCCCCEEEECCC
Confidence 34458999999999999999998876532211 2233344 78899999999875443
No 261
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=32.13 E-value=2.5e+02 Score=22.11 Aligned_cols=75 Identities=7% Similarity=0.003 Sum_probs=48.0
Q ss_pred cchHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhC
Q 031262 54 CCPYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKA 131 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~ 131 (162)
...++.+.+.+.+.+ .+..+.......++ .+..++...+.++|-||+-....... . ...+...
T Consensus 72 ~~~~i~~gi~~~~~~--~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~~~~~~~--------~-----~~~l~~~ 136 (333)
T COG1609 72 FFAEILKGIEEAARE--AGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLGERPNDS--------L-----LELLAAA 136 (333)
T ss_pred hHHHHHHHHHHHHHH--cCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHH--------H-----HHHHHhc
Confidence 346777778888877 56445444444433 56777888888999888876322211 1 3456667
Q ss_pred CceEEEEecCCC
Q 031262 132 DCLTVGVRKQSK 143 (162)
Q Consensus 132 ~~pVlvv~~~~~ 143 (162)
.+|++++.....
T Consensus 137 ~~P~V~i~~~~~ 148 (333)
T COG1609 137 GIPVVVIDRSPP 148 (333)
T ss_pred CCCEEEEeCCCc
Confidence 999999876433
No 262
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=32.11 E-value=3.6e+02 Score=23.81 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=56.0
Q ss_pred CCCEEEEEEEeCCCCCCCCCC-----Cc-cccchHHHHHHHHhHHHhCCCCeEEEEEEecC-----ch------------
Q 031262 29 KGDLLTLLHVVPPPKPNTSHH-----DS-SACCPYLANSLGSLCKACKPEVEVEALVIQGP-----KL------------ 85 (162)
Q Consensus 29 ~~~~l~l~hv~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~-----~~------------ 85 (162)
...+|+++|.-+-+....+.+ +. .--..++...+++..++. ++ .+.+-.|| +.
T Consensus 22 ~~~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~-~n---~llvD~GD~~qGsp~~~~~~~~~~~~g 97 (649)
T PRK09420 22 ATVDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEA-KN---SVLVDNGDLIQGSPLGDYMAAKGLKAG 97 (649)
T ss_pred CCceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhC-CC---EEEEECCCcCCCchhhhhhhhccccCC
Confidence 346899999987665432221 11 111233444444444331 22 23343454 21
Q ss_pred --hHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 86 --GTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 86 --~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
.-+++..+..++|...+|.|....=... ...++..+.+|++...
T Consensus 98 ~~~p~i~amN~lgyDa~tlGNHEFd~G~~~----------L~~~~~~a~fP~l~AN 143 (649)
T PRK09420 98 DVHPVYKAMNTLDYDVGNLGNHEFNYGLDY----------LKKALAGAKFPYVNAN 143 (649)
T ss_pred CcchHHHHHHhcCCcEEeccchhhhcCHHH----------HHHHHhcCCCCEEEEE
Confidence 1367888999999999999975421111 1667788899998664
No 263
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=31.99 E-value=2.1e+02 Score=21.99 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=16.2
Q ss_pred hhHHHHHHHhcCCCEEEEccCCC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.+..-+.++...+|-|++.....
T Consensus 161 ~~~~~~a~~~~~aDaviVtG~~T 183 (254)
T PF03437_consen 161 EEAAKDAVERGGADAVIVTGKAT 183 (254)
T ss_pred HHHHHHHHHhcCCCEEEECCccc
Confidence 44444555788899999987653
No 264
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=31.75 E-value=2.9e+02 Score=22.71 Aligned_cols=102 Identities=15% Similarity=0.091 Sum_probs=51.8
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEec
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQG 82 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g 82 (162)
+++.+.-|.+ .++.++..+....|..+.++.+..... ....+.+++..+. .+...++ ...
T Consensus 294 k~vai~~~~~----~~~~l~~~L~~elGm~~~~~~~~~~~~------------~~~~~~~~~~~~~--~~~~~~v--~~~ 353 (427)
T cd01971 294 RRFAVIADST----YALGLARFLVNELGWVPAKQVITDNPP------------EKYRSAIENEFEA--EGVSAEV--VFS 353 (427)
T ss_pred ceEEEECChH----HHHHHHHHHHHhcCCceEEEEecCCCC------------HHHHHHHHHHHHh--cCCCCcE--EEe
Confidence 4555554332 444444444445666666555433211 2223333333222 2333333 233
Q ss_pred CchhHHHHHHHhcC----CCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 83 PKLGTVMSQVRKLE----VSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 83 ~~~~~I~~~a~~~~----~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
+....+.+.+++.+ +|+|+=++++ .++.++...|.+-+..+.
T Consensus 354 ~D~~~~~~~i~~~~~~~~~dliig~s~~------------------~~~a~~~~ip~i~~~~P~ 399 (427)
T cd01971 354 EDGYAIGQSLRQSDFKYKPPIIFGSSWE------------------RDLAKELGGKILEVSFPV 399 (427)
T ss_pred cCHHHHHHHHHhCCCCCCCCEEEechHH------------------HHHHHHcCCCeEEEeCCC
Confidence 34447777777664 7777655543 567777888887665443
No 265
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.58 E-value=2.5e+02 Score=21.88 Aligned_cols=85 Identities=11% Similarity=0.088 Sum_probs=45.6
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecC-------c--hhHHHHHHHhcCCCEEEEccCCCCccccc----ccccCCcch
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGP-------K--LGTVMSQVRKLEVSVLVLGQKKHSAFINC----FCGTSSSEE 122 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~-------~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~----~~Gs~~~~~ 122 (162)
+-+.+.++...+...++..+.+.+..++ . ...+++.+++.++|.|.++.......... ..+.....+
T Consensus 192 r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 271 (327)
T cd02803 192 RFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLE 271 (327)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHH
Confidence 3334555555555444555555443221 1 34567778888999999987653211110 001111112
Q ss_pred hHHHhhhhCCceEEEEec
Q 031262 123 FVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 123 ~~~~v~~~~~~pVlvv~~ 140 (162)
.+..+.+..++||+....
T Consensus 272 ~~~~ir~~~~iPVi~~Gg 289 (327)
T cd02803 272 LAEKIKKAVKIPVIAVGG 289 (327)
T ss_pred HHHHHHHHCCCCEEEeCC
Confidence 235667777999988754
No 266
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=31.54 E-value=2.7e+02 Score=22.29 Aligned_cols=96 Identities=11% Similarity=0.137 Sum_probs=54.8
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe--
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ-- 81 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~-- 81 (162)
+|++++.+--+|.-++.++.+ .+.+++.+|+....... ... .....+-.+.++++|+.+ +++..+.-..
T Consensus 1 kVlValSGGvDSsvla~lL~~----~g~~v~~v~i~~~~~~~-~~~--~~~s~~d~~~a~~va~~l--gI~~~vvd~~~~ 71 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE----QGYEVIGVFMKNWDEDD-GKG--GCCSEEDLKDARRVADQL--GIPHYVVNFEKE 71 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEecccccc-ccc--CCCCHHHHHHHHHHHHHh--CCcEEEEECcHH
Confidence 588999998888877665544 35678888875321111 000 001122334566666663 3333322110
Q ss_pred ---------------c----------C-c-hhHHHHHHHhcCCCEEEEccCCCC
Q 031262 82 ---------------G----------P-K-LGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 82 ---------------g----------~-~-~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
| . . ...+.++|++.++|.|+.|++...
T Consensus 72 f~~~v~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d 125 (349)
T cd01998 72 YWEKVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARI 125 (349)
T ss_pred HHHHHHHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCe
Confidence 1 0 1 345667899999999999998653
No 267
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=31.38 E-value=52 Score=25.80 Aligned_cols=56 Identities=4% Similarity=-0.062 Sum_probs=38.7
Q ss_pred ecCchhHHHHHHHhcCCCEEEEccCCCCcc-cccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 81 QGPKLGTVMSQVRKLEVSVLVLGQKKHSAF-INCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 81 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~-~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
...-..++++.|++.+..+|+..+.+.-.. .--.+.... ..+++++++||.+==..
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~-----~~~a~~~~VPValHLDH 83 (286)
T PRK12738 27 NAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALC-----SAYSTTYNMPLALHLDH 83 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHH-----HHHHHHCCCCEEEECCC
Confidence 344589999999999999999877654221 111223333 78899999999875443
No 268
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=31.35 E-value=3.3e+02 Score=23.24 Aligned_cols=63 Identities=16% Similarity=0.025 Sum_probs=40.9
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEE
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTV 136 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVl 136 (162)
...+.++++......+ ....+..|.....+.+.+.+.++|+++=++++ .++.++..+|.+
T Consensus 400 ~~~~~l~~ll~~~~~~--~~~~v~~~~Dl~~l~~~l~~~~~DlliG~s~~------------------k~~a~~~giPli 459 (515)
T TIGR01286 400 RWKAEMKALLAASPYG--QNATVWIGKDLWHLRSLVFTEPVDFLIGNSYG------------------KYIQRDTLVPLI 459 (515)
T ss_pred HHHHHHHHHHhcCCCC--CccEEEeCCCHHHHHHHHhhcCCCEEEECchH------------------HHHHHHcCCCEE
Confidence 3445555555442222 23445667677778888888899998855543 667788888877
Q ss_pred EEe
Q 031262 137 GVR 139 (162)
Q Consensus 137 vv~ 139 (162)
-+.
T Consensus 460 r~g 462 (515)
T TIGR01286 460 RIG 462 (515)
T ss_pred Eec
Confidence 664
No 269
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=31.24 E-value=2.3e+02 Score=21.39 Aligned_cols=80 Identities=10% Similarity=0.207 Sum_probs=48.9
Q ss_pred ChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHH
Q 031262 12 TSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQ 91 (162)
Q Consensus 12 S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~ 91 (162)
-+.-..+.+|.....+..+..+.++=--... +......+..++..+. .|..+.-.-...++.+.|.+.
T Consensus 14 ~~~~~~~~~~i~n~l~g~~~~i~FIPtAs~~----------~~~~~Yv~k~~~~l~~--lg~~v~~L~l~~~~~~~Ie~~ 81 (224)
T COG3340 14 EDVLEHFLPFIANFLQGKRKTIAFIPTASVD----------SEDDFYVEKVRNALAK--LGLEVSELHLSKPPLAAIENK 81 (224)
T ss_pred chhhhhhhHHHHHHhcCCCceEEEEecCccc----------cchHHHHHHHHHHHHH--cCCeeeeeeccCCCHHHHHHh
Confidence 3345667788877665555555554221111 1223445555555555 566676555567788999998
Q ss_pred HHhcCCCEEEEccC
Q 031262 92 VRKLEVSVLVLGQK 105 (162)
Q Consensus 92 a~~~~~dliVmG~~ 105 (162)
.. ++|.|.+|.-
T Consensus 82 l~--~~d~IyVgGG 93 (224)
T COG3340 82 LM--KADIIYVGGG 93 (224)
T ss_pred hh--hccEEEECCc
Confidence 88 4599999873
No 270
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=30.90 E-value=2.1e+02 Score=20.66 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=18.4
Q ss_pred hHHHHHHHhcCCCEEEEccCCCC
Q 031262 86 GTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
..+..+|++++++-|+.|.+...
T Consensus 101 ~~a~~~A~~~g~~~v~~G~~~~d 123 (201)
T TIGR00364 101 SIAASYAEALGAEAVITGVCETD 123 (201)
T ss_pred HHHHHHHHHCCCCEEEEEeccCc
Confidence 33568899999999999998543
No 271
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=30.87 E-value=2.4e+02 Score=21.99 Aligned_cols=77 Identities=9% Similarity=-0.019 Sum_probs=42.2
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcc-cccccccCCcchhHHHhhhhCCc
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAF-INCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~-~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
+-.+.++...+.....+.+-.-+. ++. .-...+.+++.++|-+++-....... ..-+. ..- ..+...++.
T Consensus 61 Er~~~~~~~~~~~~~~~pvi~gv~-~~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~-~~f-----~~va~~~~l 133 (303)
T PRK03620 61 EYSQVVRAAVETTAGRVPVIAGAG-GGTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLA-AHV-----EAVCKSTDL 133 (303)
T ss_pred HHHHHHHHHHHHhCCCCcEEEecC-CCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHH-HHH-----HHHHHhCCC
Confidence 333344444444334455544443 233 34455778899999999876532211 11111 111 557788899
Q ss_pred eEEEEec
Q 031262 134 LTVGVRK 140 (162)
Q Consensus 134 pVlvv~~ 140 (162)
||++...
T Consensus 134 pi~lYn~ 140 (303)
T PRK03620 134 GVIVYNR 140 (303)
T ss_pred CEEEEcC
Confidence 9999863
No 272
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.77 E-value=2.2e+02 Score=21.03 Aligned_cols=74 Identities=18% Similarity=0.093 Sum_probs=41.1
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
...+.+.+++.+.+ .|.++...-..+++ ....++.....++|-|++.......... . -.-+....
T Consensus 14 ~~~~~~~i~~~~~~--~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~----------~-i~~~~~~~ 80 (282)
T cd06318 14 FAALTEAAKAHAKA--LGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVP----------A-VAAAKAAG 80 (282)
T ss_pred HHHHHHHHHHHHHH--cCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchHH----------H-HHHHHHCC
Confidence 35566666777776 45555433323344 2345666777889999886533211111 0 12234568
Q ss_pred ceEEEEecC
Q 031262 133 CLTVGVRKQ 141 (162)
Q Consensus 133 ~pVlvv~~~ 141 (162)
.||+++...
T Consensus 81 iPvV~~~~~ 89 (282)
T cd06318 81 VPVVVVDSS 89 (282)
T ss_pred CCEEEecCC
Confidence 888888653
No 273
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=30.70 E-value=4.2e+02 Score=25.18 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=32.2
Q ss_pred hHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 86 GTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
+.+++..+..++|..++|.|....=.. .....+..+++|+|...-
T Consensus 117 ~~~i~~mN~lgyDa~~lGNHEFd~G~~----------~L~~~~~~a~fp~l~aNv 161 (1163)
T PRK09419 117 HPMIKAMNALGYDAGTLGNHEFNYGLD----------FLDGTIKGANFPVLNANV 161 (1163)
T ss_pred CHHHHHHhhcCccEEeecccccccCHH----------HHHHHHhcCCCCEEEeee
Confidence 357788888999999999997542111 125667888899888743
No 274
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=30.56 E-value=60 Score=22.36 Aligned_cols=25 Identities=0% Similarity=0.012 Sum_probs=21.5
Q ss_pred CchhHHHHHHHhcCCCEEEEccCCC
Q 031262 83 PKLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 83 ~~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
-+.+.+++.|.++++|+|.|++.-.
T Consensus 39 v~~e~~v~aa~~~~adiVglS~l~~ 63 (134)
T TIGR01501 39 SPQEEFIKAAIETKADAILVSSLYG 63 (134)
T ss_pred CCHHHHHHHHHHcCCCEEEEecccc
Confidence 3589999999999999999988643
No 275
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=30.43 E-value=3.8e+02 Score=23.54 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 87 TVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 87 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
-+++..+..++|...+|.|....=... ....+..+.+|+|.-.
T Consensus 78 p~~~~mN~lgyDa~tlGNHEFd~G~~~----------L~~~~~~a~fP~l~aN 120 (626)
T TIGR01390 78 PVYKAMNLLKYDVGNLGNHEFNYGLPF----------LKQAIAAAKFPIVNAN 120 (626)
T ss_pred hHHHHHhhcCccEEecccccccccHHH----------HHHHHHhCCCCEEEEE
Confidence 367888899999999999975421111 1566788899998765
No 276
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=30.12 E-value=98 Score=22.32 Aligned_cols=41 Identities=7% Similarity=0.140 Sum_probs=27.0
Q ss_pred hHHHHHHH----hcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEE
Q 031262 86 GTVMSQVR----KLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTV 136 (162)
Q Consensus 86 ~~I~~~a~----~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVl 136 (162)
+.+.+.++ +.++|.|++|..+...+... . +.+....+.||+
T Consensus 161 ~~~~~~~~~l~~~~~~d~iiLgCt~l~~~~~~-----~-----~~l~~~~gipVi 205 (216)
T PF01177_consen 161 EILAEAARELIKEDGADAIILGCTHLPLLLGA-----I-----EALEEELGIPVI 205 (216)
T ss_dssp HHHHHHHHHHHHCTTSSEEEEESTTGGGGHHH-----H-----HHHHHTCSSEEE
T ss_pred HHHHHHHHHHhccCCCCEEEECCCchHHHHHH-----H-----HhhcccCCCEEE
Confidence 35666665 78999999998875543222 1 455555577775
No 277
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.04 E-value=2.2e+02 Score=20.84 Aligned_cols=74 Identities=16% Similarity=0.105 Sum_probs=38.8
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
...+.+.+++.+.+ .++++.+.-..+++ ....++.....++|-|++........... -..+...+
T Consensus 15 ~~~~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~-----------l~~~~~~~ 81 (275)
T cd06317 15 QTTYNKAFQAAAEE--DGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPG-----------LRKAKQAG 81 (275)
T ss_pred HHHHHHHHHHHHHh--cCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCccccHHH-----------HHHHHHCC
Confidence 35566666666666 45555443323333 23344445566789887765322111110 12245678
Q ss_pred ceEEEEecC
Q 031262 133 CLTVGVRKQ 141 (162)
Q Consensus 133 ~pVlvv~~~ 141 (162)
+||+.+...
T Consensus 82 iPvV~~~~~ 90 (275)
T cd06317 82 IPVVITNSN 90 (275)
T ss_pred CcEEEeCCC
Confidence 888887543
No 278
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=29.72 E-value=3.2e+02 Score=22.52 Aligned_cols=34 Identities=9% Similarity=0.125 Sum_probs=22.9
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEe
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
||||||+. ..++.+...++.|.+ .|-++++++..
T Consensus 1 ~~kkili~-g~g~~~~~~~~aa~~----lG~~vv~~~~~ 34 (449)
T TIGR00514 1 MLDKILIA-NRGEIALRILRACKE----LGIKTVAVHST 34 (449)
T ss_pred CcceEEEe-CCCHHHHHHHHHHHH----cCCeEEEEECh
Confidence 89999998 555555555555544 47777777653
No 279
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=29.71 E-value=2.4e+02 Score=21.15 Aligned_cols=91 Identities=20% Similarity=0.289 Sum_probs=54.8
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEec-
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQG- 82 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g- 82 (162)
++++.+.+-++|..|+.++.+. .....+++..+......... ... .+.++.+++. -++........|
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~----~~V~~L~~~~~~~~~s~~~h-----~~~-~~~~~~qA~a--lgiPl~~~~~~~~ 69 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE----HEVISLVGVFSENEESYMFH-----SPN-LHLTDLVAEA--VGIPLIKLYTSGE 69 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc----CeeEEEEEEcCCCCCccccc-----cCC-HHHHHHHHHH--cCCCeEEEEcCCc
Confidence 5888999999999999999873 24455666655432221111 111 1344555555 345544333333
Q ss_pred --CchhHHHHHHHhcCCCEEEEccCC
Q 031262 83 --PKLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 83 --~~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
+..+.+.+..++.+++-+|-|.--
T Consensus 70 ~e~~~~~l~~~l~~~gv~~vv~GdI~ 95 (222)
T TIGR00289 70 EEKEVEDLAGQLGELDVEALCIGAIE 95 (222)
T ss_pred hhHHHHHHHHHHHHcCCCEEEECccc
Confidence 235667777778889999999853
No 280
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=29.56 E-value=86 Score=26.07 Aligned_cols=11 Identities=27% Similarity=0.196 Sum_probs=7.4
Q ss_pred CCCCEEEEEEE
Q 031262 28 NKGDLLTLLHV 38 (162)
Q Consensus 28 ~~~~~l~l~hv 38 (162)
.-.+-+.++|.
T Consensus 56 ~I~d~~~lvHG 66 (456)
T TIGR01283 56 PITDAAHLVHG 66 (456)
T ss_pred ccCCEEEEEeC
Confidence 34566788885
No 281
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=29.53 E-value=2.3e+02 Score=20.84 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=46.2
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe-
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ- 81 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~- 81 (162)
.++|+-+.+.-+|--|.- +..+.|.++..+|...++... +...+..+.+.+....+..+.++...+++
T Consensus 4 gk~l~LlSGGiDSpVAa~----lm~krG~~V~~l~f~~~~~~~-------~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~ 72 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAW----LMMKRGCEVIALHFDSPPFTG-------EKAREKVEELAEKLSEYSPGHKIRLYVVDF 72 (197)
T ss_dssp -EEEEE-SSCCHHHHHHH----HHHCBT-EEEEEEEE-TTTSS-------CCCHHHHHHHHHHHHCCSTTS-EEEEEECH
T ss_pred ceEEEEecCCccHHHHHH----HHHHCCCEEEEEEEECCCCCC-------HHHHHHHHHHHHHHHHhCCCcceeEEEECc
Confidence 578888888777765543 444569999999998432211 12233344455555554455556655443
Q ss_pred cCch---------------------hHHHHHHHhcCCCEEEEccC
Q 031262 82 GPKL---------------------GTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 82 g~~~---------------------~~I~~~a~~~~~dliVmG~~ 105 (162)
++.- ..-.++|++.+++.||-|..
T Consensus 73 ~~~~~~i~~~~~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEs 117 (197)
T PF02568_consen 73 TEVQKEILRGVKERNPCIDCKRFMYRIAEEIAEEEGADAIVTGES 117 (197)
T ss_dssp HHHHHHHHHHS-GGGHHHHHHHHHHHHHHHHHHHTT--EEE----
T ss_pred HHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHCCCCEEEeCch
Confidence 1111 11125677999999999985
No 282
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=29.52 E-value=4.3e+02 Score=24.17 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=31.0
Q ss_pred HHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 88 VMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 88 I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
+++..+..++|...+|.|..+.=... ....+..+.+|+|...
T Consensus 193 ~i~amN~LGyDA~tLGNHEFDyG~d~----------L~~~l~~a~fPvl~AN 234 (814)
T PRK11907 193 MYAALEALGFDAGTLGNHEFNYGLDY----------LEKVIATANMPIVNAN 234 (814)
T ss_pred HHHHHhccCCCEEEechhhcccCHHH----------HHHHHHhCCCCEEEee
Confidence 78888999999999999975421111 1566778888988764
No 283
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=29.52 E-value=3.1e+02 Score=22.34 Aligned_cols=43 Identities=14% Similarity=0.034 Sum_probs=27.1
Q ss_pred hcCCCEEEEccCCCCc---ccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 94 KLEVSVLVLGQKKHSA---FINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 94 ~~~~dliVmG~~~~~~---~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
+..+|.+++|+.+-.. .-+. .|+.. + --+.++..+|++++-+.
T Consensus 244 ~~~Vd~VivGAD~I~~NG~v~NK-iGTy~---l-A~~Ak~~~vPfyV~ap~ 289 (363)
T PRK05772 244 KDMVNNVMVGADRILRDGHVFNK-IGTFK---E-AVIAHELGIPFYALAPT 289 (363)
T ss_pred hcCCCEEEECccEEecCCCEeeh-hhhHH---H-HHHHHHhCCCEEEEccc
Confidence 4579999999986322 2221 34333 1 34557778999998654
No 284
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=29.51 E-value=1.9e+02 Score=19.82 Aligned_cols=88 Identities=9% Similarity=0.077 Sum_probs=50.2
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecC
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGP 83 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~ 83 (162)
+|+|.+.+.++|.-.+..+.+..... .++|+.... ...+..+.++++.+.+ ++++........
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg~-----------e~p~t~~~~~~~~~~~--~~~i~~~~~~~~ 63 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTGY-----------EFPETYEFVDELAKRY--GIPIIVYRPPET 63 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-ST-----------B-HHHHHHHHHHHHHT--TCEEEEEETTSH
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecCc-----------cCHHHHHHHHHHHhhh--hhhhhhcccccc
Confidence 47899999999999999998877543 566664333 2367777777777774 566544432211
Q ss_pred c-----------------------hhHHHHHHHhcCCCEEEEccCCCC
Q 031262 84 K-----------------------LGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 84 ~-----------------------~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
. .+-+.++.++++.+++++|.+..-
T Consensus 64 ~~~~~~~~~~~~~~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~E 111 (174)
T PF01507_consen 64 FEQRFILYGWPSKLWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADE 111 (174)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHHHTHHHHHHHHHHTTESEEE----TTS
T ss_pred hhhccccccccchhhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhc
Confidence 1 111233445667778888887543
No 285
>PRK02628 nadE NAD synthetase; Reviewed
Probab=29.49 E-value=3.6e+02 Score=23.87 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=27.0
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCC---CEEEEEEE
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKG---DLLTLLHV 38 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~---~~l~l~hv 38 (162)
.++|+|++.|..+|.-++..+.+.....+ .+++.++.
T Consensus 361 ~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m 400 (679)
T PRK02628 361 LKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM 400 (679)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC
Confidence 57899999999999877777776543333 56776666
No 286
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=29.44 E-value=89 Score=24.12 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=20.9
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
.+.+-+...+.++|.|-||.|...
T Consensus 48 t~k~y~~l~~~G~dviT~GNH~wd 71 (266)
T COG1692 48 TEKIYKELLEAGADVITLGNHTWD 71 (266)
T ss_pred CHHHHHHHHHhCCCEEeccccccc
Confidence 678888889999999999999754
No 287
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=29.44 E-value=1.1e+02 Score=18.89 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=9.9
Q ss_pred hHHHHHHHhcCCCEEEEccC
Q 031262 86 GTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~ 105 (162)
+.+.+.+++.++-+++++..
T Consensus 17 ~~v~kai~~gkaklViiA~D 36 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAED 36 (82)
T ss_pred HHHHHHHHcCCeeEEEEECC
Confidence 34444445555555555554
No 288
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=29.36 E-value=60 Score=24.54 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=20.7
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCccc
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFI 111 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~ 111 (162)
...+.+..++.++|.|++|.-|.+.+.
T Consensus 163 ~~~~~~a~~edgAeaIiLGCAGms~la 189 (230)
T COG4126 163 VIEAAEALKEDGAEAIILGCAGMSDLA 189 (230)
T ss_pred HHHHHHHhhhcCCCEEEEcCccHHHHH
Confidence 345556677899999999999876553
No 289
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=29.27 E-value=2.6e+02 Score=21.34 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=8.1
Q ss_pred HHHHHHhcCCCEEEEcc
Q 031262 88 VMSQVRKLEVSVLVLGQ 104 (162)
Q Consensus 88 I~~~a~~~~~dliVmG~ 104 (162)
+++.....++|-|++..
T Consensus 46 ~i~~l~~~~vDgIIi~~ 62 (302)
T TIGR02634 46 QIENLIARGVDVLVIIP 62 (302)
T ss_pred HHHHHHHcCCCEEEEeC
Confidence 34444444555555543
No 290
>PF09043 Lys-AminoMut_A: D-Lysine 5,6-aminomutase alpha subunit; InterPro: IPR015130 This domain is found in proteins involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as cofactors. The structure is predominantly a PLP-binding TIM barrel domain, with several additional alpha-helices and beta-strands at the N and C termini. These helices and strands form an intertwined accessory clamp structure that wraps around the sides of the TIM barrel and extends up toward the Ado ligand of the Cbl cofactor, providing most of the interactions observed between the protein and the Ado ligand of the Cbl, suggesting that its role is mainly in stabilising AdoCbl in the precatalytic resting state. ; PDB: 3KP1_A 3KOW_A 3KOZ_A 3KOY_B 3KOX_A 3KP0_C 1XRS_A.
Probab=29.07 E-value=2e+02 Score=24.21 Aligned_cols=46 Identities=9% Similarity=0.124 Sum_probs=26.8
Q ss_pred eEEEEEEecCchhHHHH--HHHhcCCCEEEE-ccCCCCcccccccccCC
Q 031262 74 EVEALVIQGPKLGTVMS--QVRKLEVSVLVL-GQKKHSAFINCFCGTSS 119 (162)
Q Consensus 74 ~~~~~v~~g~~~~~I~~--~a~~~~~dliVm-G~~~~~~~~~~~~Gs~~ 119 (162)
-+-+++..|+..+.|.+ .|.++++|.|.+ -+.|.+.+.-..-|.|+
T Consensus 148 ~iy~iVAtG~iyeDi~qaraAA~~GAD~IaVIRttgQSllDyvp~GaT~ 196 (509)
T PF09043_consen 148 VIYVIVATGNIYEDIRQARAAARQGADIIAVIRTTGQSLLDYVPEGATT 196 (509)
T ss_dssp EEEEEE-SS-HHHHHHHHHHHHHTT-SEEEE-BSTTGGG-SS-B-S--S
T ss_pred eEEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhccccCCCCC
Confidence 35577778999888874 588999998855 45566666666666554
No 291
>COG1697 DNA topoisomerase VI, subunit A [DNA replication, recombination, and repair]
Probab=28.86 E-value=1.2e+02 Score=24.51 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=42.9
Q ss_pred EEEEecCc-hhHHHHHHHhcCCCEEEEccCCCC-cccccccccCCcchhHHHhhhhCCceEEEEecCCCCCCcEEE
Q 031262 77 ALVIQGPK-LGTVMSQVRKLEVSVLVLGQKKHS-AFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSKGMGGYII 150 (162)
Q Consensus 77 ~~v~~g~~-~~~I~~~a~~~~~dliVmG~~~~~-~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~~~~~~~~ 150 (162)
+.+++.+. .+.|++.....+.+.|+++..|.. ...+.|+ ..+-.....||.++-...+ .|+-|
T Consensus 186 VlvVEk~avf~rLv~e~~~~k~nailVt~KGqP~raTRrfl---------krL~eel~lpv~vftDgDP--yG~~I 250 (356)
T COG1697 186 VLVVEKDAVFQRLVEEGFWEKENAILVTLKGQPDRATRRFL---------KRLNEELDLPVYVFTDGDP--YGWYI 250 (356)
T ss_pred EEEEechHHHHHHHHhhhhhhcCeEEEecCCCccHHHHHHH---------HHHHHHhCCCEEEEecCCC--CEEEE
Confidence 44556665 899999988888999999999853 3334443 4444555789999876544 45544
No 292
>PRK14561 hypothetical protein; Provisional
Probab=28.86 E-value=2.3e+02 Score=20.55 Aligned_cols=84 Identities=13% Similarity=0.029 Sum_probs=48.5
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecC
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGP 83 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~ 83 (162)
+|+|++.|-.+|--.+.++.+. .++.++|+..... .+ .+.++..|+. -|++....-...+
T Consensus 2 kV~ValSGG~DSslll~~l~~~-----~~v~a~t~~~g~~------------~e-~~~a~~~a~~--lGi~~~~v~~~~~ 61 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-----YDVELVTVNFGVL------------DS-WKHAREAAKA--LGFPHRVLELDRE 61 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-----CCeEEEEEecCch------------hH-HHHHHHHHHH--hCCCEEEEECCHH
Confidence 5999999998888877766443 3355666543221 11 3455666666 3444433222110
Q ss_pred ---------------------chhHHHHHHHhcCCCEEEEccCCCC
Q 031262 84 ---------------------KLGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 84 ---------------------~~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
....+...+. .+++.|+.|++...
T Consensus 62 ~~~~~~~~~~~~~~P~~~~~~l~~~~l~~~a-~g~~~Ia~G~n~DD 106 (194)
T PRK14561 62 ILEKAVDMIIEDGYPNNAIQYVHEHALEALA-EEYDVIADGTRRDD 106 (194)
T ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHH-cCCCEEEEEecCCC
Confidence 1123444444 88999999998755
No 293
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=28.76 E-value=1.5e+02 Score=23.48 Aligned_cols=47 Identities=11% Similarity=0.168 Sum_probs=30.7
Q ss_pred chhHHHHHHHhcCCCEEEEccCCC-Ccc-cccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 84 KLGTVMSQVRKLEVSVLVLGQKKH-SAF-INCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 84 ~~~~I~~~a~~~~~dliVmG~~~~-~~~-~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
+....++.++ ++|+||+|-... +++ ..+.+. +|.+.+ ++.||+.|.+
T Consensus 175 a~p~vl~AI~--~AD~IiiGPgnp~TSI~P~L~v~-----gi~eAL---~~a~vV~Vsp 223 (303)
T PRK13606 175 PAPGVLEAIE--EADAVIIGPSNPVTSIGPILAVP-----GIREAL---TEAPVVAVSP 223 (303)
T ss_pred CCHHHHHHHH--hCCEEEECCCccHHhhchhccch-----hHHHHH---hCCCEEEEcC
Confidence 4778888888 679999998653 222 223333 333555 7888897655
No 294
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=28.68 E-value=57 Score=25.50 Aligned_cols=56 Identities=11% Similarity=0.096 Sum_probs=38.6
Q ss_pred ecCchhHHHHHHHhcCCCEEEEccCCCCcccc-cccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 81 QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFIN-CFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 81 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
.-.-..++++.|++.+..+|+.-+.+...... -++.... ...++++++||.+==..
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~-----~~~a~~~~VPValHLDH 83 (284)
T PRK12737 27 NLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIA-----EVAARKYNIPLALHLDH 83 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHH-----HHHHHHCCCCEEEECCC
Confidence 34458999999999999999987765432111 1233333 78888999998875443
No 295
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=28.66 E-value=86 Score=18.72 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=13.5
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEE
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLT 34 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~ 34 (162)
.+++.++.|..+....+ +++.+++.|.++.
T Consensus 49 d~~i~iS~sg~t~~~~~-~~~~a~~~g~~ii 78 (87)
T cd04795 49 DVVIALSYSGRTEELLA-ALEIAKELGIPVI 78 (87)
T ss_pred CEEEEEECCCCCHHHHH-HHHHHHHcCCeEE
Confidence 34555555554444333 3333444454443
No 296
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=28.49 E-value=3.5e+02 Score=22.58 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=23.4
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEe
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
|+||||++ ..++-+...++++.++ |-+.++++..
T Consensus 1 ~~~kvLi~-~~geia~~ii~a~~~~----Gi~~v~v~~~ 34 (472)
T PRK07178 1 MIKKILIA-NRGEIAVRIVRACAEM----GIRSVAIYSE 34 (472)
T ss_pred CCcEEEEE-CCcHHHHHHHHHHHHc----CCeEEEEeCC
Confidence 78999999 5566666666666553 6666666654
No 297
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=28.38 E-value=2.4e+02 Score=20.65 Aligned_cols=85 Identities=12% Similarity=0.039 Sum_probs=46.4
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
|+||.|-..++.....++-.++..- .....+.+ ++...... ...+.+++ .++.+...-..
T Consensus 1 m~ki~vl~sg~gs~~~~ll~~~~~~-~~~~~I~~--vvs~~~~~---------------~~~~~a~~--~gIp~~~~~~~ 60 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAG-QLPAEIVA--VISDRPDA---------------YGLERAEA--AGIPTFVLDHK 60 (200)
T ss_pred CceEEEEEcCCChhHHHHHHHHHcC-CCCcEEEE--EEecCccc---------------hHHHHHHH--cCCCEEEECcc
Confidence 3567777776666677776665422 23344444 33222111 13455555 46665331111
Q ss_pred ---cC--chhHHHHHHHhcCCCEEEEccCC
Q 031262 82 ---GP--KLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 82 ---g~--~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
+. -.+.+.+..++.++|++|+-..+
T Consensus 61 ~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~ 90 (200)
T PRK05647 61 DFPSREAFDAALVEALDAYQPDLVVLAGFM 90 (200)
T ss_pred ccCchhHhHHHHHHHHHHhCcCEEEhHHhh
Confidence 11 14577888889999999886553
No 298
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=28.31 E-value=3e+02 Score=21.66 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=25.4
Q ss_pred CCCEEEEccCCC---CcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 96 EVSVLVLGQKKH---SAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 96 ~~dliVmG~~~~---~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
++|.+++|+..- +.+-+. .|+.. + --++++..+||+++-+
T Consensus 183 ~vd~VivGad~v~~nG~v~nk-iGT~~---l-A~~Ak~~~vPv~V~a~ 225 (301)
T TIGR00511 183 EVDHVVVGADAITANGALINK-IGTSQ---L-ALAAREARVPFMVAAE 225 (301)
T ss_pred hCCEEEECccEEecCCCEEEH-HhHHH---H-HHHHHHhCCCEEEEcc
Confidence 489999999863 222221 23332 1 4456777999999855
No 299
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=28.28 E-value=88 Score=26.29 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=29.2
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEE------EecCchhHHHHHHH-hcCCCEEEEccCCC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALV------IQGPKLGTVMSQVR-KLEVSVLVLGQKKH 107 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v------~~g~~~~~I~~~a~-~~~~dliVmG~~~~ 107 (162)
+++.+.+.++.+++.+. +-..+ +-|+..+++++.++ +.++.+|.+-+.|.
T Consensus 83 ~~L~~~i~ei~~~~~p~--~ifv~~TC~t~iIGdDle~va~~~~~~~gipVV~v~~~Gf 139 (457)
T CHL00073 83 EELKRLCLQIKKDRNPS--VIVWIGTCTTEIIKMDLEGMAPKLEAEIGIPIVVARANGL 139 (457)
T ss_pred HHHHHHHHHHHHhCCCC--EEEEEccCcHHhhccCHHHHHHHHHHhhCCCEEEEeCCCc
Confidence 45555556666664332 22222 12666777766554 77888888888764
No 300
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=28.05 E-value=2.8e+02 Score=21.27 Aligned_cols=56 Identities=7% Similarity=0.185 Sum_probs=37.5
Q ss_pred EEEEecCchhHH-HHHHHhcCCCEEEEccCCCC-cccccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 77 ALVIQGPKLGTV-MSQVRKLEVSVLVLGQKKHS-AFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 77 ~~v~~g~~~~~I-~~~a~~~~~dliVmG~~~~~-~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
++...|.-.... ....+++++|.||.=..|.. ++.. + -...+...+||++|+.+..
T Consensus 177 iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~e---------K--i~AA~~lgi~vivI~RP~~ 234 (256)
T TIGR00715 177 IIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELE---------K--VKAAEALGINVIRIARPQT 234 (256)
T ss_pred EEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHH---------H--HHHHHHcCCcEEEEeCCCC
Confidence 444455543333 46688899999998887753 2221 2 2456778999999988765
No 301
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=27.87 E-value=3.7e+02 Score=22.65 Aligned_cols=51 Identities=12% Similarity=0.241 Sum_probs=29.6
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.+++.+.+.+-+.+...+++++..-......+.|.+.+. ++|.|++|+...
T Consensus 265 Te~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~--~ad~vilGspT~ 315 (479)
T PRK05452 265 TRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVF--RSKGVLVGSSTM 315 (479)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHh--hCCEEEEECCcc
Confidence 356666666655542235555544333334555555444 679999998754
No 302
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=27.82 E-value=84 Score=22.73 Aligned_cols=79 Identities=10% Similarity=0.189 Sum_probs=51.1
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecC
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGP 83 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~ 83 (162)
+-|||.|..+.+....+|..++ +..|..++++.- ... .+++.+.+. +.+..+...+.
T Consensus 37 NTLv~wd~~~~tpe~~~W~~e~-k~~gi~v~vvSN---n~e---------------~RV~~~~~~----l~v~fi~~A~K 93 (175)
T COG2179 37 NTLVPWDNPDATPELRAWLAEL-KEAGIKVVVVSN---NKE---------------SRVARAAEK----LGVPFIYRAKK 93 (175)
T ss_pred CceecccCCCCCHHHHHHHHHH-HhcCCEEEEEeC---CCH---------------HHHHhhhhh----cCCceeecccC
Confidence 4589999999999999999986 466777777763 211 133333333 33444444555
Q ss_pred c-hhHHHHHHHhcCC---CEEEEccC
Q 031262 84 K-LGTVMSQVRKLEV---SVLVLGQK 105 (162)
Q Consensus 84 ~-~~~I~~~a~~~~~---dliVmG~~ 105 (162)
| ..++-+..++.+. +.+++|-.
T Consensus 94 P~~~~fr~Al~~m~l~~~~vvmVGDq 119 (175)
T COG2179 94 PFGRAFRRALKEMNLPPEEVVMVGDQ 119 (175)
T ss_pred ccHHHHHHHHHHcCCChhHEEEEcch
Confidence 5 6777777777765 46777764
No 303
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=27.69 E-value=61 Score=25.36 Aligned_cols=56 Identities=5% Similarity=0.045 Sum_probs=38.5
Q ss_pred ecCchhHHHHHHHhcCCCEEEEccCCCCcccc-cccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 81 QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFIN-CFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 81 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
.-+-..++++.|++.+..+|+..+.+...... -.+.... ...++++++||.+==..
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~-----~~~A~~~~VPValHLDH 83 (284)
T PRK12857 27 NMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMV-----RTAAEKASVPVALHLDH 83 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHH-----HHHHHHCCCCEEEECCC
Confidence 33458999999999999999988876432211 1233333 77888999999875443
No 304
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=27.67 E-value=3e+02 Score=21.58 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=28.7
Q ss_pred CCCEEEEccCCC---CcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 96 EVSVLVLGQKKH---SAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 96 ~~dliVmG~~~~---~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
++|++.+|+.|- +++-+. +|... + .-|+++...|+.++-..
T Consensus 198 ~vD~VlVGAEGVvEsGGIIN~-iGTyq---~-~v~Ak~~~kPfYV~AES 241 (313)
T KOG1466|consen 198 RVDLVLVGAEGVVESGGIINK-IGTYQ---V-AVCAKSMNKPFYVVAES 241 (313)
T ss_pred hccEEEEccceeeecCceeee-cccch---h-hhhHHhcCCCeEEEeec
Confidence 469999999873 555554 45544 1 45677778999998664
No 305
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=27.65 E-value=3.9e+02 Score=22.84 Aligned_cols=100 Identities=9% Similarity=-0.005 Sum_probs=53.9
Q ss_pred CCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhC-CCCeEEEEEEecCc-----------hhHHHHHHHhcCC
Q 031262 30 GDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACK-PEVEVEALVIQGPK-----------LGTVMSQVRKLEV 97 (162)
Q Consensus 30 ~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~v~~g~~-----------~~~I~~~a~~~~~ 97 (162)
..+|+++|.-+-+....+.....--..++...+++..++.. .+-+ .+.+-.||. .+..++..+..++
T Consensus 32 ~~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~-~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~~g~ 110 (551)
T PRK09558 32 TYKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGS-VLLLSGGDINTGVPESDLQDAEPDFRGMNLIGY 110 (551)
T ss_pred ceEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCC-EEEEcCCccccceEhhhhcCCchhHHHHhcCCC
Confidence 45899999987665432211111122333333444332210 1111 123323432 3456778899999
Q ss_pred CEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 98 SVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 98 dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
|..++|.|....=...+ ...+..+..|+|...-
T Consensus 111 Da~tlGNHEFD~G~~~L----------~~~~~~a~fp~l~aNv 143 (551)
T PRK09558 111 DAMAVGNHEFDNPLSVL----------RKQEKWAKFPFLSANI 143 (551)
T ss_pred CEEcccccccCcCHHHH----------HHhhccCCCCEEEEEE
Confidence 99999999754211111 4556778888887653
No 306
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=27.38 E-value=1.7e+02 Score=23.79 Aligned_cols=83 Identities=6% Similarity=0.069 Sum_probs=47.8
Q ss_pred hHHHHHHHHhHHHhCCCCeEE-EEEEecCchhHHHHHHHhcCCCEEEEccCCCCcc-c-----------ccccccCCcch
Q 031262 56 PYLANSLGSLCKACKPEVEVE-ALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAF-I-----------NCFCGTSSSEE 122 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~-~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~-~-----------~~~~Gs~~~~~ 122 (162)
+++.+.++...+. +.-+- .-+..-.-..++++.|++.+..+|+..+.+.-.. . +.+.|+..-..
T Consensus 13 ~~~~~lL~~A~~~---~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 89 (357)
T TIGR01520 13 DDVHKLFQYAKEN---NFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAH 89 (357)
T ss_pred HHHHHHHHHHHHC---CceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHH
Confidence 4555555443333 22222 2233344589999999999999999988765221 1 01111111112
Q ss_pred hHHHhhhhCCceEEEEecC
Q 031262 123 FVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 123 ~~~~v~~~~~~pVlvv~~~ 141 (162)
.+..++.++++||.+==..
T Consensus 90 ~v~~~Ae~a~VPValHLDH 108 (357)
T TIGR01520 90 HVHSIAEHYGVPVVLHTDH 108 (357)
T ss_pred HHHHHHHHCCCCEEEECCC
Confidence 3377888999999875443
No 307
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.33 E-value=2e+02 Score=19.50 Aligned_cols=47 Identities=11% Similarity=-0.000 Sum_probs=30.9
Q ss_pred HHHHHhHHHhCCCCeEEEEEEecC-chhHHHHHHHhcCCCEEEEccCCCCcc
Q 031262 60 NSLGSLCKACKPEVEVEALVIQGP-KLGTVMSQVRKLEVSVLVLGQKKHSAF 110 (162)
Q Consensus 60 ~~~~~~~~~~~~~v~~~~~v~~g~-~~~~I~~~a~~~~~dliVmG~~~~~~~ 110 (162)
+.+..+.+. .|.++ .-...+ +.+.+++.+.+.++|.|++.+...+..
T Consensus 20 ~iv~~~l~~--~GfeV--i~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~ 67 (132)
T TIGR00640 20 KVIATAYAD--LGFDV--DVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHL 67 (132)
T ss_pred HHHHHHHHh--CCcEE--EECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhH
Confidence 444555554 56333 333333 478999999999999999998764433
No 308
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=27.32 E-value=1e+02 Score=25.38 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=32.0
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEE------EecCchhHHHHHHHhcCCCEEEEccCCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALV------IQGPKLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v------~~g~~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.+.+.+.+++..+++.++ +-.++ .-||..+++++.+++.++.++.+-+.|.
T Consensus 71 ~~kL~~~I~~~~~~~~p~--~I~V~ttC~~~~IGdDi~~v~~~~~~~~~~vi~v~t~gf 127 (427)
T cd01971 71 EDRLRELIKSTLSIIDAD--LFVVLTGCIAEIIGDDVGAVVSEFQEGGAPIVYLETGGF 127 (427)
T ss_pred HHHHHHHHHHHHHhCCCC--EEEEEcCCcHHHhhcCHHHHHHHhhhcCCCEEEEECCCc
Confidence 366777777777765443 22222 1266677777777777788888877663
No 309
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=27.22 E-value=2.1e+02 Score=23.26 Aligned_cols=69 Identities=12% Similarity=0.216 Sum_probs=43.8
Q ss_pred HHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCC--CcccccccccCCcchhHHHhhhhCCceEEE
Q 031262 60 NSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKH--SAFINCFCGTSSSEEFVDQCIKKADCLTVG 137 (162)
Q Consensus 60 ~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~--~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlv 137 (162)
..+++.... .++ ++..- .......-++.+++..+|.|.|.-.-. ++++ +. +.+.+..++||++
T Consensus 15 ~~i~~~l~~-~~~--i~vv~-~a~ng~~a~~~~~~~~PDVi~ld~emp~mdgl~------~l-----~~im~~~p~pVim 79 (350)
T COG2201 15 KVISDILNS-DPD--IEVVG-TARNGREAIDKVKKLKPDVITLDVEMPVMDGLE------AL-----RKIMRLRPLPVIM 79 (350)
T ss_pred HHHHHHHhc-CCC--eEEEE-ecCCHHHHHHHHHhcCCCEEEEecccccccHHH------HH-----HHHhcCCCCcEEE
Confidence 444555544 122 33333 334455667788889999999998743 2122 12 7788889999999
Q ss_pred EecCCC
Q 031262 138 VRKQSK 143 (162)
Q Consensus 138 v~~~~~ 143 (162)
+..-..
T Consensus 80 vsslt~ 85 (350)
T COG2201 80 VSSLTE 85 (350)
T ss_pred Eecccc
Confidence 987544
No 310
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=26.91 E-value=3.6e+02 Score=22.15 Aligned_cols=34 Identities=9% Similarity=0.093 Sum_probs=26.9
Q ss_pred EEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCC
Q 031262 5 VMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPP 41 (162)
Q Consensus 5 Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~ 41 (162)
|++++.+--+|.-++.|+.+. .+.+++.+|+.-.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~---~~~eV~av~~d~G 34 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEK---GGYEVIAVTADVG 34 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHh---CCCeEEEEEEECC
Confidence 578999998999999988764 2457999998744
No 311
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=26.80 E-value=2.8e+02 Score=20.88 Aligned_cols=73 Identities=8% Similarity=-0.030 Sum_probs=37.8
Q ss_pred HHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEE
Q 031262 61 SLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVG 137 (162)
Q Consensus 61 ~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlv 137 (162)
.+.+.+.+ .+++.-..+....+.+.|..+++...--+.+|+..+-.+-...+..+.. +.++.+-+..++|+.+
T Consensus 120 ~~~~~~~~--~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~--~~i~~lr~~~~~pI~v 192 (242)
T cd04724 120 EFREAAKE--YGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLK--ELIKRIRKYTDLPIAV 192 (242)
T ss_pred HHHHHHHH--cCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHH--HHHHHHHhcCCCcEEE
Confidence 44455555 5666666666666667776666633223455665554332221211111 2224555555788776
No 312
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=26.73 E-value=4e+02 Score=22.68 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=27.2
Q ss_pred chhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 84 KLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 84 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
....+.+.+++.++|+|+=+++. .++.++.++|.+.+..
T Consensus 350 D~~el~~~i~~~~PdliiG~~~e------------------r~~a~~lgiP~~~i~~ 388 (519)
T PRK02910 350 DYLEVEDAIAEAAPELVLGTQME------------------RHSAKRLGIPCAVISA 388 (519)
T ss_pred CHHHHHHHHHhcCCCEEEEcchH------------------HHHHHHcCCCEEEecc
Confidence 34788888899999998832322 5566777777776654
No 313
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=26.67 E-value=2.8e+02 Score=27.15 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=44.9
Q ss_pred cchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 54 CCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
..+.+.+.+.++.+. .++..+.+.+..+.....|..-+.+-.+|.|++..++-+. |-.. ...++++..
T Consensus 979 SieDL~qlI~~Lk~~-~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGT------GAap-----~~~~~~~Gl 1046 (1485)
T PRK11750 979 SIEDLAQLIFDLKQV-NPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGT------GASP-----LTSVKYAGS 1046 (1485)
T ss_pred CHHHHHHHHHHHHHh-CCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCc------cccc-----HHHHhhCCc
Confidence 346666666666665 3567788887766555666666667789999998875431 2223 455666666
Q ss_pred e
Q 031262 134 L 134 (162)
Q Consensus 134 p 134 (162)
|
T Consensus 1047 P 1047 (1485)
T PRK11750 1047 P 1047 (1485)
T ss_pred c
Confidence 6
No 314
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=26.62 E-value=3.3e+02 Score=21.72 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=40.9
Q ss_pred HHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe---cCc-hhHHHHHHHhc
Q 031262 20 MWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ---GPK-LGTVMSQVRKL 95 (162)
Q Consensus 20 ~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~---g~~-~~~I~~~a~~~ 95 (162)
.+|.++|+ .|-++.|+. +..+.+.+-.+|+.++ .++++.++..+ ++. .+.|.+...+.
T Consensus 64 ayA~eLAk-rG~nvvLIs---------------Rt~~KL~~v~kEI~~~--~~vev~~i~~Dft~~~~~ye~i~~~l~~~ 125 (312)
T KOG1014|consen 64 AYARELAK-RGFNVVLIS---------------RTQEKLEAVAKEIEEK--YKVEVRIIAIDFTKGDEVYEKLLEKLAGL 125 (312)
T ss_pred HHHHHHHH-cCCEEEEEe---------------CCHHHHHHHHHHHHHH--hCcEEEEEEEecCCCchhHHHHHHHhcCC
Confidence 35666665 555555554 1235555555666666 34777766655 443 78899999988
Q ss_pred CCCEEE
Q 031262 96 EVSVLV 101 (162)
Q Consensus 96 ~~dliV 101 (162)
++.++|
T Consensus 126 ~VgILV 131 (312)
T KOG1014|consen 126 DVGILV 131 (312)
T ss_pred ceEEEE
Confidence 888887
No 315
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=26.57 E-value=2.8e+02 Score=21.43 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=30.6
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHH---HHHHhcCCCEEEEcc
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLGTVM---SQVRKLEVSVLVLGQ 104 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~---~~a~~~~~dliVmG~ 104 (162)
..-..++.+.+.. .|+++.-...-||..+.|. +.+.+. +|+||...
T Consensus 20 dtNa~~la~~L~~--~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tG 68 (255)
T COG1058 20 DTNAAFLADELTE--LGVDLARITTVGDNPDRIVEALREASER-ADVVITTG 68 (255)
T ss_pred cchHHHHHHHHHh--cCceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEECC
Confidence 3344566666666 6888887777788755554 445555 99998865
No 316
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=26.57 E-value=3.5e+02 Score=21.99 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=26.6
Q ss_pred EEEEeC-CChhhHHHHHHHHHhccCCCCEEEEEEEeCC
Q 031262 5 VMVVVD-QTSHSKHAMMWALTHVTNKGDLLTLLHVVPP 41 (162)
Q Consensus 5 Ilv~vD-~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~ 41 (162)
|.+-.+ .+.....+++.++.+++..+.++++.|+...
T Consensus 215 v~~H~e~~~~~e~~av~~~~~~a~~~g~r~~i~H~ss~ 252 (415)
T cd01297 215 YQTHVRYEGDSILEALDELLRLGRETGRPVHISHLKSA 252 (415)
T ss_pred EEEEECcccccHHHHHHHHHHHHHHhCCCEEEEEEecC
Confidence 444444 3344567888888888888899999998744
No 317
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=26.56 E-value=1.4e+02 Score=22.57 Aligned_cols=68 Identities=12% Similarity=0.279 Sum_probs=38.9
Q ss_pred hHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCC----CCCcEEEec--eeeceee
Q 031262 86 GTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK----GMGGYIIST--RWQKNFW 159 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~----~~~~~~~~~--~~~~~~~ 159 (162)
+..++.+.+.+.|.|++|.+..-.-.+ +..+. +. +++.+.||++.+.... .-..+++.+ ++-+.+|
T Consensus 22 ~~~~~~~~~~gtdai~vGGS~~vt~~~--~~~~v-----~~-ik~~~lPvilfp~~~~~i~~~aDa~l~~svlNs~~~~~ 93 (232)
T PRK04169 22 DEALEAICESGTDAIIVGGSDGVTEEN--VDELV-----KA-IKEYDLPVILFPGNIEGISPGADAYLFPSVLNSRNPYW 93 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccchHH--HHHHH-----HH-HhcCCCCEEEeCCCccccCcCCCEEEEEEEecCCCcch
Confidence 333367777889999999875221111 11111 33 4448899999866422 123555544 5566677
Q ss_pred ec
Q 031262 160 LL 161 (162)
Q Consensus 160 ~~ 161 (162)
+.
T Consensus 94 ii 95 (232)
T PRK04169 94 II 95 (232)
T ss_pred Hh
Confidence 63
No 318
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=26.36 E-value=2.6e+02 Score=20.36 Aligned_cols=73 Identities=11% Similarity=0.086 Sum_probs=37.0
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
.++.+.+++.+.+ .+..+.......++ ....++.....++|-++++......... . -..++..++
T Consensus 15 ~~~~~~i~~~~~~--~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~----------~-l~~l~~~~i 81 (268)
T cd06323 15 VTLKDGAQKEAKE--LGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVP----------A-VKAANEAGI 81 (268)
T ss_pred HHHHHHHHHHHHH--cCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHH----------H-HHHHHHCCC
Confidence 5555566666665 35444433223333 2344555556678887776432110000 0 122455688
Q ss_pred eEEEEecC
Q 031262 134 LTVGVRKQ 141 (162)
Q Consensus 134 pVlvv~~~ 141 (162)
|++.+...
T Consensus 82 pvv~~~~~ 89 (268)
T cd06323 82 PVFTIDRE 89 (268)
T ss_pred cEEEEccC
Confidence 88888553
No 319
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=26.36 E-value=3.4e+02 Score=21.76 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=24.6
Q ss_pred CCCEEEEccCCC---CcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 96 EVSVLVLGQKKH---SAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 96 ~~dliVmG~~~~---~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
.+..+|+|++.- +++. ...|-.+ +-.++++-..||++.-+
T Consensus 230 rVnKVIigt~avl~NGgl~-~~~G~~~----vAlaAk~h~vPv~VlAp 272 (353)
T KOG1465|consen 230 RVNKVIIGTHAVLANGGLR-APSGVHT----VALAAKHHSVPVIVLAP 272 (353)
T ss_pred hcceEEEEeeeEecCCCee-ccchHHH----HHHHHHhcCCcEEEecc
Confidence 356889999852 3322 2222211 25677888899999866
No 320
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=26.22 E-value=3.5e+02 Score=21.80 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=26.7
Q ss_pred HHHHHHHhHHHhCCCCeEEEE-EEecCc----hhHHHHHHHhcCCCEEE-EccC
Q 031262 58 LANSLGSLCKACKPEVEVEAL-VIQGPK----LGTVMSQVRKLEVSVLV-LGQK 105 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~-v~~g~~----~~~I~~~a~~~~~dliV-mG~~ 105 (162)
+.+.+.+..++ .++++... -++.+| .+.+.+.+++.++|.|| +|.-
T Consensus 42 ~~~~v~~~L~~--~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGG 93 (380)
T cd08185 42 YLDRVIELLKQ--AGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGG 93 (380)
T ss_pred HHHHHHHHHHH--cCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 44445544444 45555432 123444 45666778888999988 7753
No 321
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=26.07 E-value=2.9e+02 Score=20.83 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=28.7
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCC
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPP 42 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~ 42 (162)
|++++|++.+--+|--++.||.+. +.+++.+++.-..
T Consensus 1 m~kvvVl~SGG~DSt~~l~~a~~~----~~~v~alt~dygq 37 (231)
T PRK11106 1 MKRAVVVFSGGQDSTTCLIQALQQ----YDEVHCVTFDYGQ 37 (231)
T ss_pred CCcEEEEeeCcHHHHHHHHHHHhc----CCeEEEEEEEeCC
Confidence 368999999999999999998652 4578888876443
No 322
>TIGR00930 2a30 K-Cl cotransporter.
Probab=25.98 E-value=5.4e+02 Score=23.95 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=57.6
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe-c
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ-G 82 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~-g 82 (162)
++||.+.........+++|-.+.+ ...-.++.|+.+..... ..++.....+.++++.+. .+++.-..+.. .
T Consensus 577 qiLvl~~~p~~~~~Ll~f~~~l~~-~~gl~i~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~ 648 (953)
T TIGR00930 577 QCLVLTGPPVCRPALLDFASQFTK-GKGLMICGSVIQGPRLE-----CVKEAQAAEAKIQTWLEK--NKVKAFYAVVVAD 648 (953)
T ss_pred eEEEEeCCCcCcHHHHHHHHHhcc-CCcEEEEEEEecCchhh-----hHHHHHHHHHHHHHHHHH--hCCCeEEEEecCC
Confidence 588888777777889999988873 33567778888543211 011122233444444444 44554433433 4
Q ss_pred CchhHHHHHHH-----hcCCCEEEEccCC
Q 031262 83 PKLGTVMSQVR-----KLEVSVLVLGQKK 106 (162)
Q Consensus 83 ~~~~~I~~~a~-----~~~~dliVmG~~~ 106 (162)
+..+++....+ ..+++.|+||-..
T Consensus 649 ~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 677 (953)
T TIGR00930 649 DLREGVRHLIQASGLGRMKPNTLVMGYKK 677 (953)
T ss_pred CHHHHHHHHHHhcCCCCCCCCEEEecCcc
Confidence 45677777666 4568999999864
No 323
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=25.98 E-value=1.2e+02 Score=19.76 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=25.2
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEe
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
+.+++.+..|..+...++.+ +.++..|+++..+.-.
T Consensus 47 ~d~~I~iS~sG~t~e~~~~~-~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 47 DTLVIAISQSGETADTLAAL-RLAKEKGAKTVAITNV 82 (126)
T ss_pred CcEEEEEeCCcCCHHHHHHH-HHHHHcCCeEEEEECC
Confidence 45788888888887755544 4567777777766654
No 324
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.93 E-value=85 Score=20.82 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=29.4
Q ss_pred HHHhHHHhCCCCeEEEEEEe-cCchhHHHHHHHhcCCCEEEEccCCCC
Q 031262 62 LGSLCKACKPEVEVEALVIQ-GPKLGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 62 ~~~~~~~~~~~v~~~~~v~~-g~~~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
+..+... .|.++ .... ..|.+.+++.+.+.++|.|+++.....
T Consensus 19 ~~~~l~~--~G~~v--i~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~ 62 (122)
T cd02071 19 IARALRD--AGFEV--IYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGG 62 (122)
T ss_pred HHHHHHH--CCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEcccchh
Confidence 3344444 56433 3333 346889999999999999999987543
No 325
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=25.89 E-value=1.5e+02 Score=22.34 Aligned_cols=69 Identities=4% Similarity=0.215 Sum_probs=40.3
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCC----CCCcEEEec--eeecee
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK----GMGGYIIST--RWQKNF 158 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~----~~~~~~~~~--~~~~~~ 158 (162)
...+++.+.+.+.|.|++|.+..-...+. ..+. + .+++...||++.+.... .-..+++.+ ++-+.+
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~~--~~~v-----~-~ik~~~lPvilfp~~~~~i~~~aDa~l~~svlNs~~~~ 87 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEKT--DTLI-----E-ALRRYGLPIILFPSNPTNVSRDADALFFPSVLNSDDPY 87 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHHH--HHHH-----H-HHhccCCCEEEeCCCccccCcCCCEEEEEEeecCCCch
Confidence 44577777888899999998753222211 1111 3 34455699999876322 123555544 556667
Q ss_pred eec
Q 031262 159 WLL 161 (162)
Q Consensus 159 ~~~ 161 (162)
|+.
T Consensus 88 ~ii 90 (223)
T TIGR01768 88 WII 90 (223)
T ss_pred HHH
Confidence 753
No 326
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=25.88 E-value=3.5e+02 Score=21.74 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=32.1
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecC-chhHHHHHHHhcCCCEEEEccCCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGP-KLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~-~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.+.+.+.++++.+.. ++.+-+... |. ......+.+.+.++|.|+++.+|.
T Consensus 171 f~~~le~i~~i~~~~--~vPVivK~~-g~g~s~~~a~~l~~~Gvd~I~Vsg~GG 221 (352)
T PRK05437 171 FRGWLDNIAEIVSAL--PVPVIVKEV-GFGISKETAKRLADAGVKAIDVAGAGG 221 (352)
T ss_pred HHHHHHHHHHHHHhh--CCCEEEEeC-CCCCcHHHHHHHHHcCCCEEEECCCCC
Confidence 345557777777763 344544443 22 245666777788999999988764
No 327
>PRK00766 hypothetical protein; Provisional
Probab=25.83 E-value=2e+02 Score=21.23 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=34.7
Q ss_pred CCeEEEEEEecC-chhHHHHHHHh----cCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEE
Q 031262 72 EVEVEALVIQGP-KLGTVMSQVRK----LEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGV 138 (162)
Q Consensus 72 ~v~~~~~v~~g~-~~~~I~~~a~~----~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv 138 (162)
++-.....++|. ..+.|++..+. .++.+|++..-..+++. .+ ++ +.+-+.+..||++|
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFN-vv-------D~-~~l~~~tg~PVI~V 104 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFN-VV-------DI-EELYRETGLPVIVV 104 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeE-Ee-------cH-HHHHHHHCCCEEEE
Confidence 333444445664 47888888775 34557776665444332 11 11 66778888888888
No 328
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=25.76 E-value=3.5e+02 Score=21.71 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=27.6
Q ss_pred HHhcCCCEEEEccCCCC---cccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 92 VRKLEVSVLVLGQKKHS---AFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 92 a~~~~~dliVmG~~~~~---~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
..+.++|.+++|+..-. ..-+. .|+.. + --+.++-.+||+++-+
T Consensus 211 M~~~~Vd~VivGAd~I~aNG~v~NK-iGT~~---l-Al~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 211 MRKKEIDLVIVGADRIASNGDFANK-IGTYE---K-AVLAKVNGIPFYVAAP 257 (329)
T ss_pred hhhcCCCEEEECccEEecCCCEeeh-hhHHH---H-HHHHHHcCCCEEEecc
Confidence 34567999999998632 22221 34333 1 3455777999999855
No 329
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=25.72 E-value=2.2e+02 Score=21.28 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=27.0
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~ 105 (162)
....+.++++.+.. ++ +.+.+ .|-....-+..+.+.++|.+|+|+.
T Consensus 158 ~~~~~ki~~~~~~~-~~--~~I~V-dGGI~~~ti~~~~~aGad~iVvGsa 203 (228)
T PTZ00170 158 HDMMPKVRELRKRY-PH--LNIQV-DGGINLETIDIAADAGANVIVAGSS 203 (228)
T ss_pred HHHHHHHHHHHHhc-cc--CeEEE-CCCCCHHHHHHHHHcCCCEEEEchH
Confidence 34445555554432 22 33333 5666545555667778999999964
No 330
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=25.68 E-value=2.6e+02 Score=20.18 Aligned_cols=73 Identities=14% Similarity=0.060 Sum_probs=35.9
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
.++.+.+++.+++ .+.++.+.-..+++ ....++.....++|.|+++......... . -..+....+
T Consensus 15 ~~~~~~~~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~~~------~-----~~~l~~~~i 81 (267)
T cd01536 15 QAMNKGAEAAAKE--LGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALTP------A-----LKKANAAGI 81 (267)
T ss_pred HHHHHHHHHHHHh--cCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhHHH------H-----HHHHHHCCC
Confidence 5555666666655 45444443333343 2333443344478877776532111000 1 123455678
Q ss_pred eEEEEecC
Q 031262 134 LTVGVRKQ 141 (162)
Q Consensus 134 pVlvv~~~ 141 (162)
|++.+...
T Consensus 82 p~V~~~~~ 89 (267)
T cd01536 82 PVVTVDSD 89 (267)
T ss_pred cEEEecCC
Confidence 88887553
No 331
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=25.36 E-value=3.1e+02 Score=20.89 Aligned_cols=74 Identities=7% Similarity=0.008 Sum_probs=45.4
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCc-hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPK-LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~-~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
..++...+.+.+.+ .|..+-..-..++. .+..++...+.++|-+|+.+.... ... - ..+.+. +.
T Consensus 16 f~~ii~gIe~~a~~--~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~-~~~------l-----~~~~~~-~i 80 (279)
T PF00532_consen 16 FAEIIRGIEQEARE--HGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSEND-DEE------L-----RRLIKS-GI 80 (279)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCT-CHH------H-----HHHHHT-TS
T ss_pred HHHHHHHHHHHHHH--cCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCC-hHH------H-----HHHHHc-CC
Confidence 35666667777776 56444433333444 447777888899999999865433 111 1 344444 89
Q ss_pred eEEEEecCCC
Q 031262 134 LTVGVRKQSK 143 (162)
Q Consensus 134 pVlvv~~~~~ 143 (162)
||+++.....
T Consensus 81 PvV~~~~~~~ 90 (279)
T PF00532_consen 81 PVVLIDRYID 90 (279)
T ss_dssp EEEEESS-SC
T ss_pred CEEEEEeccC
Confidence 9999977644
No 332
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=25.16 E-value=3.1e+02 Score=20.86 Aligned_cols=42 Identities=5% Similarity=0.030 Sum_probs=28.2
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEE
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVG 137 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlv 137 (162)
.+.|++.+++.++|+|++|--.+. ...+ . .......+++|++
T Consensus 146 ~~~i~~~I~~s~~dil~VglG~Pk--QE~~----~-----~~~~~~~~~~v~~ 187 (243)
T PRK03692 146 RQALFERIHASGAKIVTVAMGSPK--QEIF----M-----RDCRLVYPDALYM 187 (243)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcH--HHHH----H-----HHHHHhCCCCEEE
Confidence 577999999999999999985432 2222 1 4445556677644
No 333
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=25.16 E-value=2.3e+02 Score=19.72 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=34.1
Q ss_pred hHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhC-CceEEEEecC
Q 031262 86 GTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKA-DCLTVGVRKQ 141 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~-~~pVlvv~~~ 141 (162)
..+..+.+++++|-||+-.|... .-|-|+..+=++ +.++.-. .|+|-++.+.
T Consensus 51 ~~f~kl~~dy~Vd~VvIk~R~~K---GKfAGga~~FKm-EaaIQL~~~~~V~lvs~~ 103 (138)
T PF11215_consen 51 FTFAKLMEDYKVDKVVIKERATK---GKFAGGAVGFKM-EAAIQLIDDVEVELVSPA 103 (138)
T ss_pred HHHHHHHHHcCCCEEEEEecccC---CCccCCchhHHH-HHHHHhcCCCcEEEECHH
Confidence 34556777888999998887532 345566664444 4445544 7888888763
No 334
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=24.91 E-value=2.9e+02 Score=20.46 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=40.5
Q ss_pred CCCeEEEEEEecC------------chhHHHHHHHhcC-CCEEEEccCCCCccccccc-ccCCcchhHHHhhhhCCceEE
Q 031262 71 PEVEVEALVIQGP------------KLGTVMSQVRKLE-VSVLVLGQKKHSAFINCFC-GTSSSEEFVDQCIKKADCLTV 136 (162)
Q Consensus 71 ~~v~~~~~v~~g~------------~~~~I~~~a~~~~-~dliVmG~~~~~~~~~~~~-Gs~~~~~~~~~v~~~~~~pVl 136 (162)
++.++++..+..+ ..+.|++..+... .|.|++=..--..=...|+ +-+. +.+.+...+||.
T Consensus 123 ~~~~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~~~~~d~lllP~~ml~~~~~~fLDD~t~-----~el~~~lg~~v~ 197 (204)
T PF04459_consen 123 PGLEVEVVPVKNRFFGGTITVAGLLTGQDIIEQLKGKELGDLLLLPDVMLRHGEGVFLDDMTL-----EELEERLGVPVI 197 (204)
T ss_pred CCCeEEEEEeecCCCCCCeEEeeCccHHHHHHHhCcCCCCCEEEECHHHhcCCCCccCCCCcH-----HHHHHHhCCcEE
Confidence 5666665554433 1566766666544 3788887654333223333 5555 788888899998
Q ss_pred EEecC
Q 031262 137 GVRKQ 141 (162)
Q Consensus 137 vv~~~ 141 (162)
+++.+
T Consensus 198 vv~~~ 202 (204)
T PF04459_consen 198 VVRGP 202 (204)
T ss_pred EeCCC
Confidence 88754
No 335
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=24.79 E-value=2.2e+02 Score=22.14 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=31.9
Q ss_pred hHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccC
Q 031262 65 LCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 65 ~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~ 105 (162)
...-+..|+.+++.......-+.+.+++++.++..||+=..
T Consensus 26 v~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq 66 (273)
T PF12745_consen 26 VQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQ 66 (273)
T ss_pred HHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEec
Confidence 33335578888887755557899999999999999988665
No 336
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=24.76 E-value=1.5e+02 Score=24.15 Aligned_cols=50 Identities=12% Similarity=0.194 Sum_probs=26.1
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEE------EecCchhHHHHHHH-hcCCCEEEEccCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALV------IQGPKLGTVMSQVR-KLEVSVLVLGQKK 106 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v------~~g~~~~~I~~~a~-~~~~dliVmG~~~ 106 (162)
.+.+.+.+++..+++.+. +-.++ .-|+..+.+++.++ +.++.++.+.+.|
T Consensus 71 ~~~L~~~i~~~~~~~~P~--~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~vi~v~t~g 127 (410)
T cd01968 71 EKKLYKAILEIIERYHPK--AVFVYSTCVVALIGDDIDAVCKTASEKFGIPVIPVHSPG 127 (410)
T ss_pred HHHHHHHHHHHHHhCCCC--EEEEECCCchhhhccCHHHHHHHHHHhhCCCEEEEECCC
Confidence 356666666666664433 21111 12555666665554 3455666666554
No 337
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=24.71 E-value=1.1e+02 Score=25.25 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=23.4
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEE------EecCchhHHHHHHH-hcCCCEEEEccCC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALV------IQGPKLGTVMSQVR-KLEVSVLVLGQKK 106 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v------~~g~~~~~I~~~a~-~~~~dliVmG~~~ 106 (162)
+.+.+.+++..+++.+. +-.++ .-||..++|++.++ +.++.+|.+-+.|
T Consensus 75 ~kL~~aI~~~~~~~~P~--~I~V~ttC~~~iIGdDi~~v~~~~~~~~~~pvi~v~t~g 130 (426)
T cd01972 75 KKLEDTIKEAYSRYKPK--AIFVATSCATGIIGDDVESVVEELEDEIGIPVVALHCEG 130 (426)
T ss_pred HHHHHHHHHHHHhCCCC--EEEEECCChHHHhccCHHHHHHHHHHhhCCCEEEEeCCc
Confidence 55555556655554332 11111 12455555555544 3455555555544
No 338
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=24.57 E-value=82 Score=24.53 Aligned_cols=57 Identities=5% Similarity=0.002 Sum_probs=38.8
Q ss_pred ecCchhHHHHHHHhcCCCEEEEccCCCCcccc-cccccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 81 QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFIN-CFCGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 81 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
.-+-..++++.|++.+..+|+.-+.+.-.... -.++... ..+.+++++||.+==...
T Consensus 22 n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~-----~~~a~~~~VPV~lHLDH~ 79 (276)
T cd00947 22 NLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMV-----KAAAERASVPVALHLDHG 79 (276)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHH-----HHHHHHCCCCEEEECCCC
Confidence 34458999999999999999988766432211 1233333 778888899998854443
No 339
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.01 E-value=3e+02 Score=20.23 Aligned_cols=73 Identities=14% Similarity=0.035 Sum_probs=36.8
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCch--hHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKL--GTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~--~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
..+.+.+++.+.+ .+.++...-..+++. ...++.+...++|-+|++......... . -..+...++
T Consensus 15 ~~~~~~i~~~~~~--~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~------~-----l~~~~~~~i 81 (277)
T cd06319 15 QIMGRGVKSKAKA--LGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVT------L-----LKLAAQAKI 81 (277)
T ss_pred HHHHHHHHHHHHh--cCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHH------H-----HHHHHHCCC
Confidence 4555566666665 354443322233432 233333445678988876543211111 1 223456788
Q ss_pred eEEEEecC
Q 031262 134 LTVGVRKQ 141 (162)
Q Consensus 134 pVlvv~~~ 141 (162)
||+++...
T Consensus 82 pvV~~~~~ 89 (277)
T cd06319 82 PVVIADIG 89 (277)
T ss_pred CEEEEecC
Confidence 98888543
No 340
>PRK06683 hypothetical protein; Provisional
Probab=23.95 E-value=1.8e+02 Score=18.11 Aligned_cols=44 Identities=7% Similarity=0.084 Sum_probs=24.3
Q ss_pred hHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 86 GTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
+...+.+++.++-+|++.........+-+ .+..+...+|+..+.
T Consensus 17 ~~v~kaik~gkaklViiA~Da~~~~~~~i----------~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 17 KRTLEAIKNGIVKEVVIAEDADMRLTHVI----------IRTALQHNIPITKVE 60 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHHHHHHH----------HHHHHhcCCCEEEEC
Confidence 45556666677777777765433222211 334455567776655
No 341
>PRK12569 hypothetical protein; Provisional
Probab=23.93 E-value=2.9e+02 Score=21.20 Aligned_cols=75 Identities=12% Similarity=0.200 Sum_probs=47.4
Q ss_pred HHHHhHHHhCCCCeEEEEEEec--------C--chhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhh
Q 031262 61 SLGSLCKACKPEVEVEALVIQG--------P--KLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKK 130 (162)
Q Consensus 61 ~~~~~~~~~~~~v~~~~~v~~g--------~--~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~ 130 (162)
.++.++.. .+.++..+--.| | .++.|++.+++.+.++++++..+ |.. ....+.
T Consensus 97 aL~~~~~~--~g~~l~hVKPHGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~~----------s~~-----~~~A~~ 159 (245)
T PRK12569 97 ALREFARA--HGVRLQHVKPHGALYMHAARDEALARLLVEALARLDPLLILYCMDG----------SAT-----ERAARE 159 (245)
T ss_pred HHHHHHHH--cCCeeEEecCCHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCC----------cHH-----HHHHHH
Confidence 34566666 566666555444 2 28899999999999999998654 223 556677
Q ss_pred CCceEEE--EecCCCCCCcEEEec
Q 031262 131 ADCLTVG--VRKQSKGMGGYIIST 152 (162)
Q Consensus 131 ~~~pVlv--v~~~~~~~~~~~~~~ 152 (162)
...+++- +-.+.....|.|++.
T Consensus 160 ~Gl~~~~E~FADR~Y~~dG~Lv~R 183 (245)
T PRK12569 160 LGQPVVREFYADRDYDDSGSIVFT 183 (245)
T ss_pred cCCCeEEEEEecCccCCCCCEecC
Confidence 7776653 233444344666544
No 342
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=23.86 E-value=1.1e+02 Score=22.94 Aligned_cols=66 Identities=11% Similarity=0.172 Sum_probs=35.6
Q ss_pred CCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCC--CcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 72 EVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKH--SAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 72 ~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~--~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
+-+++-++..-|+...+++.|.+.++|+||. +|+. .++++. .++....++...+++ ..++|+...-
T Consensus 29 ~~~v~~V~~~ld~t~~vi~~A~~~~~dlIIt-HHP~~f~~~~~~-~~~~~~~~~~~~li~-~~I~vy~~Ht 96 (241)
T PF01784_consen 29 EQEVKKVLVALDATPEVIEEAIEKGADLIIT-HHPLFFKPLKSL-TGDDYKGKIIEKLIK-NGISVYSAHT 96 (241)
T ss_dssp SSBESEEEEESS-SHHHHHHHHHTT-SEEEE-SS-SSSSTSSHC-HCHSHHHHHHHHHHH-TT-EEEEESH
T ss_pred ccccCEEEEEEeCCHHHHHHHHHcCCCEEEE-cCchhhcCCccc-cccchhhHHHHHHHH-CCCEEEEecc
Confidence 3456666667788899999999999997764 3332 222222 222122233355555 5777776643
No 343
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=23.76 E-value=80 Score=22.13 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=14.4
Q ss_pred hhHHHHHHHhcCCCEEEEccCCC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.+.+.+++.++++|+|++|..+.
T Consensus 52 ~~~l~~~i~~~kP~vI~v~g~~~ 74 (150)
T PF14639_consen 52 MERLKKFIEKHKPDVIAVGGNSR 74 (150)
T ss_dssp HHHHHHHHHHH--SEEEE--SST
T ss_pred HHHHHHHHHHcCCeEEEEcCCCh
Confidence 46677788888999999976543
No 344
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=23.76 E-value=3.6e+02 Score=24.65 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=58.2
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCC-----CCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEE
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNK-----GDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEA 77 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~-----~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 77 (162)
...+++=.+|.....|+-.++...... .+.++.+++-|-. +....+...++.+.+. -|+++
T Consensus 39 nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLk----------ALn~Di~~rL~~~~~~--~G~~v-- 104 (814)
T COG1201 39 NVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLK----------ALNNDIRRRLEEPLRE--LGIEV-- 104 (814)
T ss_pred ceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHH----------HHHHHHHHHHHHHHHH--cCCcc--
Confidence 344556688989999999988665544 3458888886543 2336666777777766 34444
Q ss_pred EEEecCchhHHHHHHHhcCCCEEEEcc
Q 031262 78 LVIQGPKLGTVMSQVRKLEVSVLVLGQ 104 (162)
Q Consensus 78 ~v~~g~~~~~I~~~a~~~~~dliVmG~ 104 (162)
.+..||..+.=-+.-.++-+|+++..-
T Consensus 105 ~vRhGDT~~~er~r~~~~PPdILiTTP 131 (814)
T COG1201 105 AVRHGDTPQSEKQKMLKNPPHILITTP 131 (814)
T ss_pred ceecCCCChHHhhhccCCCCcEEEeCh
Confidence 667788766655556666677777543
No 345
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=23.72 E-value=2.7e+02 Score=22.73 Aligned_cols=106 Identities=10% Similarity=0.063 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHHhccCCC-CEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecC-chhHHHH
Q 031262 13 SHSKHAMMWALTHVTNKG-DLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGP-KLGTVMS 90 (162)
Q Consensus 13 ~~s~~al~~A~~~a~~~~-~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~-~~~~I~~ 90 (162)
.....+++|++... | .++.++-..-. --.+..+.++++..+....+--+.-+--|+ ..+.|++
T Consensus 119 Q~~~pl~~~~~~~~---G~~r~~lvGSdYv------------~pre~Nri~r~~l~~~GgevvgE~Y~plg~td~~~ii~ 183 (363)
T PF13433_consen 119 QQLLPLIDYLLENF---GAKRFYLVGSDYV------------YPRESNRIIRDLLEARGGEVVGERYLPLGATDFDPIIA 183 (363)
T ss_dssp GTHHHHHHHHHHHS-----SEEEEEEESSH------------HHHHHHHHHHHHHHHTT-EEEEEEEE-S-HHHHHHHHH
T ss_pred hhHHHHHHHHHhcc---CCceEEEecCCcc------------chHHHHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHH
Confidence 35567777877654 6 77877764211 125666777888777422222233343454 4899999
Q ss_pred HHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 91 QVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 91 ~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
.+++.++|+|+----|.+... |+-... +.-+....|||+-..-
T Consensus 184 ~I~~~~Pd~V~stlvG~s~~a--F~r~~~-----~aG~~~~~~Pi~S~~~ 226 (363)
T PF13433_consen 184 EIKAAKPDFVFSTLVGDSNVA--FYRAYA-----AAGLDPERIPIASLST 226 (363)
T ss_dssp HHHHHT-SEEEEE--TTCHHH--HHHHHH-----HHH-SSS---EEESS-
T ss_pred HHHhhCCCEEEEeCcCCcHHH--HHHHHH-----HcCCCcccCeEEEEec
Confidence 999999998876555654321 111112 2234444688886543
No 346
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=23.70 E-value=1.8e+02 Score=21.87 Aligned_cols=73 Identities=3% Similarity=0.019 Sum_probs=36.0
Q ss_pred HHHHHhHHHh-CCCCeEEEEEEec-----CchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 60 NSLGSLCKAC-KPEVEVEALVIQG-----PKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 60 ~~~~~~~~~~-~~~v~~~~~v~~g-----~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
..++..++.. ..|.+|..+-... +-.+.|.++.++++++-|.+-.-+.-.+.+.+ +......+|
T Consensus 49 saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~d~~l~~~l----------~~~~~~~~i 118 (224)
T PF04244_consen 49 SAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPGDYRLEQRL----------ESLAQQLGI 118 (224)
T ss_dssp HHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S-HHHHHHH----------HH----SSS
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCCCHHHHHHH----------HhhhcccCC
Confidence 4444444443 2576676555442 33789999999999999999887765555433 455667889
Q ss_pred eEEEEecCC
Q 031262 134 LTVGVRKQS 142 (162)
Q Consensus 134 pVlvv~~~~ 142 (162)
|+-++..+.
T Consensus 119 ~~~~~~~~~ 127 (224)
T PF04244_consen 119 PLEVLEDPH 127 (224)
T ss_dssp -EEEE--TT
T ss_pred ceEEeCCCC
Confidence 999987763
No 347
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=23.67 E-value=1.3e+02 Score=21.99 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=29.8
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCC
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPP 42 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~ 42 (162)
..+++.+..|..+.. +..+++.|+..|.+++.+...+..
T Consensus 110 gDvli~iS~SG~s~~-v~~a~~~Ak~~G~~vI~IT~~~~s 148 (196)
T PRK10886 110 GDVLLAISTRGNSRD-IVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_pred CCEEEEEeCCCCCHH-HHHHHHHHHHCCCEEEEEeCCCCC
Confidence 468999999987777 445666788899998888876443
No 348
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=23.46 E-value=2.2e+02 Score=20.46 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=28.0
Q ss_pred EEEEEEecC------chhHHHHHHHhcCCCEEEEccCCCCcc
Q 031262 75 VEALVIQGP------KLGTVMSQVRKLEVSVLVLGQKKHSAF 110 (162)
Q Consensus 75 ~~~~v~~g~------~~~~I~~~a~~~~~dliVmG~~~~~~~ 110 (162)
.++.+..|. ....+...+++..+|++|-|.+.....
T Consensus 82 ~ki~l~HGh~~~~~~~~~~l~~la~~~~~Dvli~GHTH~p~~ 123 (172)
T COG0622 82 VKIFLTHGHLYFVKTDLSLLEYLAKELGADVLIFGHTHKPVA 123 (172)
T ss_pred EEEEEECCCccccccCHHHHHHHHHhcCCCEEEECCCCcccE
Confidence 557777783 467788889999999999999865443
No 349
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=23.40 E-value=1.3e+02 Score=21.70 Aligned_cols=118 Identities=10% Similarity=0.005 Sum_probs=60.3
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCC-CCCccccchHHHHHHHHhHHHhCCCCeEEEEEEec
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTS-HHDSSACCPYLANSLGSLCKACKPEVEVEALVIQG 82 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g 82 (162)
||++++.+|-.+..+.+..-.+.+ .|.++.++-.-.-.....+ .+. . ...+.++....... .
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~-~g~~V~vv~T~~A~~fv~~e~~~---~----~~~l~~~~~~~~~~---------~ 63 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKE-AGVEVHLVISDWAKETIKYETDI---D----PGEVEELATKYYDA---------D 63 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEECccHHHHHHHHHCC---C----HHHHHHHhhhhCCC---------c
Confidence 589999999999999998888754 4666555442111100000 000 0 11122221111110 0
Q ss_pred CchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHH---hhhhCCceEEEEecCC
Q 031262 83 PKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQ---CIKKADCLTVGVRKQS 142 (162)
Q Consensus 83 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~---v~~~~~~pVlvv~~~~ 142 (162)
+....+..- ...+|++|+.--..+.+.++-.|-.. +.+.. ++-..++||++++...
T Consensus 64 ~~~~~i~~~--s~~aD~~vIaPATantiAkiA~GiaD--~Llt~~a~~~L~~~~pv~i~P~~m 122 (181)
T TIGR00421 64 DFAAPIASG--SFPFDGMVVVPCSMKTLSAIANGYAD--NLITRAADVCLKERRKLVLVPRET 122 (181)
T ss_pred ccccccccC--CchhCEEEEecCCHhHHHHHHcccCC--CHHHHHHHHHHhcCCCEEEEeCCC
Confidence 000111100 23578888887776767666666544 12222 2334789999999643
No 350
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=23.33 E-value=1.3e+02 Score=23.81 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=10.4
Q ss_pred hHHHHHHHhcCCCEEE-Ecc
Q 031262 86 GTVMSQVRKLEVSVLV-LGQ 104 (162)
Q Consensus 86 ~~I~~~a~~~~~dliV-mG~ 104 (162)
+.+.+.+++.++|.|| +|.
T Consensus 67 ~~~~~~~~~~~~d~IIaiGG 86 (337)
T cd08177 67 EAAVAAAREAGADGIVAIGG 86 (337)
T ss_pred HHHHHHHHhcCCCEEEEeCC
Confidence 3444445556677666 543
No 351
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=23.30 E-value=4.1e+02 Score=21.54 Aligned_cols=94 Identities=10% Similarity=0.001 Sum_probs=54.3
Q ss_pred EEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCc
Q 031262 5 VMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPK 84 (162)
Q Consensus 5 Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~ 84 (162)
.+|.++++-.+-..-..|..+- +.|-.+.+... +. -.....+.++.+.++ -|+++...-..+||
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~-~~g~~VllaA~-DT------------FRAaAiEQL~~w~er--~gv~vI~~~~G~Dp 206 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLK-QQGKSVLLAAG-DT------------FRAAAIEQLEVWGER--LGVPVISGKEGADP 206 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHH-HCCCeEEEEec-ch------------HHHHHHHHHHHHHHH--hCCeEEccCCCCCc
Confidence 3455566655555555554432 34444444332 11 124455677778777 56665543334566
Q ss_pred hhHH---HHHHHhcCCCEEEEccCCCCcccccc
Q 031262 85 LGTV---MSQVRKLEVSVLVLGQKKHSAFINCF 114 (162)
Q Consensus 85 ~~~I---~~~a~~~~~dliVmG~~~~~~~~~~~ 114 (162)
+..+ +++|+..++|+|++-+-||-..+.-+
T Consensus 207 AaVafDAi~~Akar~~DvvliDTAGRLhnk~nL 239 (340)
T COG0552 207 AAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNL 239 (340)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCcccccCchhH
Confidence 4433 46788899999999999886554433
No 352
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=23.19 E-value=98 Score=21.22 Aligned_cols=27 Identities=0% Similarity=-0.006 Sum_probs=22.8
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCCC
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
.-+.+.+++.+.+.++|+|.++.....
T Consensus 40 ~vp~e~i~~~a~~~~~d~V~lS~~~~~ 66 (137)
T PRK02261 40 MTSQEEFIDAAIETDADAILVSSLYGH 66 (137)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCcccc
Confidence 346899999999999999999986543
No 353
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=23.15 E-value=72 Score=24.98 Aligned_cols=53 Identities=4% Similarity=-0.021 Sum_probs=36.1
Q ss_pred CchhHHHHHHHhcCCCEEEEccCCCCcccc-cccccCCcchhHHHhhhhCCceEEEEec
Q 031262 83 PKLGTVMSQVRKLEVSVLVLGQKKHSAFIN-CFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 83 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
....++++.|++.+.-+|+..+.+.-.... -.+.... ..+++++++||.+==.
T Consensus 29 e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~-----~~~A~~~~vPV~lHLD 82 (283)
T PRK07998 29 ETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIV-----KRHADKMDVPVSLHLD 82 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHH-----HHHHHHCCCCEEEECc
Confidence 347899999999999999988765422111 1223333 6778889999887533
No 354
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=23.14 E-value=1.3e+02 Score=24.39 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=27.1
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEE------EecCchhHHHHHHH-hcCCCEEEEccCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALV------IQGPKLGTVMSQVR-KLEVSVLVLGQKK 106 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v------~~g~~~~~I~~~a~-~~~~dliVmG~~~ 106 (162)
.+.+.+.+++..+++.+. +-.++ .-|+..+.+++.++ +.++.+|.+-+.|
T Consensus 72 ~~~L~~~i~~~~~~~~P~--~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~vi~v~t~g 128 (406)
T cd01967 72 EKKLKKAIKEAYERFPPK--AIFVYSTCPTGLIGDDIEAVAKEASKELGIPVIPVNCEG 128 (406)
T ss_pred HHHHHHHHHHHHHhCCCC--EEEEECCCchhhhccCHHHHHHHHHHhhCCCEEEEeCCC
Confidence 456666677776665443 21111 12555666665554 4456666666655
No 355
>PRK05406 LamB/YcsF family protein; Provisional
Probab=23.13 E-value=2.6e+02 Score=21.46 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=41.5
Q ss_pred HHHHHhHHHhCCCCeEEEEEEecC----------chhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhh
Q 031262 60 NSLGSLCKACKPEVEVEALVIQGP----------KLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIK 129 (162)
Q Consensus 60 ~~~~~~~~~~~~~v~~~~~v~~g~----------~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~ 129 (162)
..++.+|.. .+.++.-+--.|- .+++|++.+++.+.+++++|..+ |.. ....+
T Consensus 93 gAL~~~a~~--~g~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~~----------s~~-----~~~A~ 155 (246)
T PRK05406 93 GALQAIARA--AGGRVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLAG----------SEL-----IRAAE 155 (246)
T ss_pred HHHHHHHHH--cCCeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCC----------hHH-----HHHHH
Confidence 345666666 5666665554442 27899999999999999999754 223 55667
Q ss_pred hCCceEEE
Q 031262 130 KADCLTVG 137 (162)
Q Consensus 130 ~~~~pVlv 137 (162)
....|++-
T Consensus 156 ~~Gl~~~~ 163 (246)
T PRK05406 156 EAGLRTAS 163 (246)
T ss_pred HcCCcEEE
Confidence 77777663
No 356
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=23.04 E-value=4.4e+02 Score=21.80 Aligned_cols=95 Identities=14% Similarity=0.123 Sum_probs=45.9
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEec
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQG 82 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g 82 (162)
++|.+-.+.++.+...++...+.++..|..+...-.+.... ....+...+.++... .++..+-+....+
T Consensus 187 ~~Vaii~~~~~yg~~~~~~~~~~~~~~gi~i~~~~~i~~~~----------~~~d~~~~l~~lk~~-~~da~vvv~~~~~ 255 (472)
T cd06374 187 TYVSAVHTEGNYGESGMEAFKELAAHEGLCIAHSDKIYSNA----------GEQSFDRLLRKLRSR-LPKARVVVCFCEG 255 (472)
T ss_pred cEEEEEEecchHHHHHHHHHHHHHHHCCeeEEEEEEecCCC----------chHHHHHHHHHHHhc-CCCcEEEEEEech
Confidence 45555555555556566666665555554433322221110 112333334443322 1333332222233
Q ss_pred CchhHHHHHHHhcCCC--EEEEccCCCC
Q 031262 83 PKLGTVMSQVRKLEVS--VLVLGQKKHS 108 (162)
Q Consensus 83 ~~~~~I~~~a~~~~~d--liVmG~~~~~ 108 (162)
.....+++.+++.+.. .+.+|+.+..
T Consensus 256 ~~~~~~l~~a~~~g~~~~~~wi~s~~~~ 283 (472)
T cd06374 256 MTVRGLLMAMRRLGVGGEFQLIGSDGWA 283 (472)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecccc
Confidence 3466778888877764 5778887643
No 357
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=23.04 E-value=1.4e+02 Score=19.27 Aligned_cols=36 Identities=6% Similarity=0.242 Sum_probs=26.2
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEe
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
+.+++.+..|..+...++.+. .+++.+.+++++.-.
T Consensus 54 ~d~vi~is~sg~~~~~~~~~~-~ak~~g~~vi~iT~~ 89 (131)
T PF01380_consen 54 DDLVIIISYSGETRELIELLR-FAKERGAPVILITSN 89 (131)
T ss_dssp TEEEEEEESSSTTHHHHHHHH-HHHHTTSEEEEEESS
T ss_pred cceeEeeeccccchhhhhhhH-HHHhcCCeEEEEeCC
Confidence 467888888887777777666 677788888666543
No 358
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.95 E-value=3.5e+02 Score=20.65 Aligned_cols=50 Identities=14% Similarity=0.013 Sum_probs=27.4
Q ss_pred hHHHHHHHHhHHHhCCCCeEEE--EEEecC-chhHHHHHHHhcCCCEEEEccCCC
Q 031262 56 PYLANSLGSLCKACKPEVEVEA--LVIQGP-KLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~--~v~~g~-~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
+...+.+++.+++ .++++.. ....+. ....++..+++.++|.|++...+.
T Consensus 151 ~~~~~~~~~~~~~--~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~ 203 (312)
T cd06346 151 VGLADAFTKAFEA--LGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPE 203 (312)
T ss_pred hHHHHHHHHHHHH--cCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccc
Confidence 4455556655555 3444432 122232 255666666677788888776543
No 359
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=22.87 E-value=2.8e+02 Score=19.45 Aligned_cols=133 Identities=17% Similarity=0.113 Sum_probs=61.8
Q ss_pred CCChhh-HHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEec------
Q 031262 10 DQTSHS-KHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQG------ 82 (162)
Q Consensus 10 D~S~~s-~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g------ 82 (162)
|+=... ...++.|.+.|+..+....++...+.+.................++++.+.. -|++.-..+--.
T Consensus 15 DGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~---~Gvd~~~~~~F~~~~~~l 91 (157)
T PF06574_consen 15 DGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLES---LGVDYVIVIPFTEEFANL 91 (157)
T ss_dssp TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHH---TTESEEEEE-CCCHHCCS
T ss_pred CCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHH---cCCCEEEEecchHHHHcC
Confidence 554444 5678889999988888877777654332111111111223444444444444 255554444222
Q ss_pred CchhHHHHHHH-hcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCCCCCcEEEec
Q 031262 83 PKLGTVMSQVR-KLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSKGMGGYIIST 152 (162)
Q Consensus 83 ~~~~~I~~~a~-~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~~~~~~~~~~ 152 (162)
++.+=|-.+.. ..++.-||+|..-+=+..+ .|+.. -.....+.....|.++++-.. ++..|++
T Consensus 92 s~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~--~G~~~---~L~~~~~~~g~~v~~v~~~~~--~~~~ISS 155 (157)
T PF06574_consen 92 SPEDFIEKILKEKLNVKHIVVGEDFRFGKNR--SGDVE---LLKELGKEYGFEVEVVPPVKI--DGEKISS 155 (157)
T ss_dssp -HHHHHHHHCCCHCTEEEEEEETT-EESGGG--EEEHH---HHHHCTTTT-SEEEEE---EE--TTEE-SH
T ss_pred CHHHHHHHHHHhcCCccEEEEccCccCCCCC--CCCHH---HHHHhcccCceEEEEECCEEc--CCcEeCC
Confidence 22333444455 8999999999963211111 12221 112222333478899877633 4555544
No 360
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=22.80 E-value=1.6e+02 Score=21.30 Aligned_cols=62 Identities=10% Similarity=0.061 Sum_probs=34.8
Q ss_pred ecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHh--hhhCCceEEEEecCCC
Q 031262 81 QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQC--IKKADCLTVGVRKQSK 143 (162)
Q Consensus 81 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v--~~~~~~pVlvv~~~~~ 143 (162)
.|....=|.-..+-.++|++++.--..+.......|=.. +=|+..+ ..+..+||+++|...+
T Consensus 73 ~~ansPfi~GrlqlGkYD~llvaPaTsNTvAKIa~GIAD-tLVTNAVaqa~Kg~VPvyivP~D~k 136 (187)
T COG1036 73 IGANSPFIAGRLQLGKYDFLLVAPATSNTVAKIAYGIAD-TLVTNAVAQAGKGKVPVYIVPVDYK 136 (187)
T ss_pred cCCCCCceecceecccccEEEEcccccchHHHHHhhhHH-HHHHHHHHHhcCCCCcEEEeccccc
Confidence 343333344455556789999987655555444444211 1111222 2345899999998766
No 361
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=22.77 E-value=3.4e+02 Score=20.52 Aligned_cols=73 Identities=8% Similarity=0.035 Sum_probs=37.0
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEE-EEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 56 PYLANSLGSLCKACKPEVEVEAL-VIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~-v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..+.+.+++.+++ .+..+... ....++ ....++.....++|-||+.......+... . +. +....
T Consensus 15 ~~i~~gi~~~a~~--~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~-----~-----~~-~~~~~ 81 (298)
T cd06302 15 NRMEEGAKEAAKE--LGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPV-----L-----KK-AREAG 81 (298)
T ss_pred HHHHHHHHHHHHH--hCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHH-----H-----HH-HHHCC
Confidence 4566666666666 45444432 122333 33444445556788777754221111111 1 22 35578
Q ss_pred ceEEEEecC
Q 031262 133 CLTVGVRKQ 141 (162)
Q Consensus 133 ~pVlvv~~~ 141 (162)
+||+.+...
T Consensus 82 iPvV~v~~~ 90 (298)
T cd06302 82 IKVVTHDSD 90 (298)
T ss_pred CeEEEEcCC
Confidence 888888653
No 362
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=22.77 E-value=2.3e+02 Score=20.51 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=28.5
Q ss_pred CCcEEEEEe-CCChhhHHHHHHHHHhccC-CCCEEEEEEEe
Q 031262 1 MRKRVMVVV-DQTSHSKHAMMWALTHVTN-KGDLLTLLHVV 39 (162)
Q Consensus 1 m~~~Ilv~v-D~S~~s~~al~~A~~~a~~-~~~~l~l~hv~ 39 (162)
|| +|+|.. ......+...+.+.+-+.. .|.++.++.+.
T Consensus 1 M~-kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 1 MA-KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CC-eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 55 566666 4566778888888888876 78899888875
No 363
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=22.73 E-value=1.5e+02 Score=21.80 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=32.5
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhc---CCCEEEEccCC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKL---EVSVLVLGQKK 106 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~---~~dliVmG~~~ 106 (162)
.+..+..++..++ .+..-.+.+..|++.+.+-+...+. ..|+|.+=+..
T Consensus 80 ~~~~~~A~~~~~~--ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K 131 (205)
T PF01596_consen 80 PERAEIARENFRK--AGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK 131 (205)
T ss_dssp HHHHHHHHHHHHH--TTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG
T ss_pred HHHHHHHHHHHHh--cCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc
Confidence 3444555555555 3444446667799998888888765 58999998864
No 364
>PLN02476 O-methyltransferase
Probab=22.70 E-value=2.9e+02 Score=21.56 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=33.6
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHh---cCCCEEEEccCC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRK---LEVSVLVLGQKK 106 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~---~~~dliVmG~~~ 106 (162)
++..+..++..++ .++.-.+.+..|++.+.+-+...+ ...|+|.+.+..
T Consensus 153 ~e~~~~Ar~n~~~--aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K 204 (278)
T PLN02476 153 SNSLEVAKRYYEL--AGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADK 204 (278)
T ss_pred HHHHHHHHHHHHH--cCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCH
Confidence 4444555555555 466556777889998888776532 468999999874
No 365
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=22.69 E-value=1.2e+02 Score=21.15 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=22.2
Q ss_pred EecCchhHHHHHHHhcCCCEEEEccCCC
Q 031262 80 IQGPKLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 80 ~~g~~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
..+.+.....+++++.++|.+|.|....
T Consensus 72 ~v~~~~~~~~~~~~~~~~d~vv~G~d~~ 99 (152)
T cd02173 72 VIGAPYVITKELIEHFKIDVVVHGKTEE 99 (152)
T ss_pred EECCCCcchHHHHHHhCCCEEEECCCCc
Confidence 3466666678899999999999997643
No 366
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=22.64 E-value=3.4e+02 Score=20.46 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=31.0
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
...+.+..++..+|.|++-...+... .-| ...+....+...+++||+....
T Consensus 157 ~~~~~~~l~~~G~~~iivt~i~~~g~---~~g--~~~~~~~~i~~~~~ipvia~GG 207 (254)
T TIGR00735 157 AVEWAKEVEKLGAGEILLTSMDKDGT---KSG--YDLELTKAVSEAVKIPVIASGG 207 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCcccC---CCC--CCHHHHHHHHHhCCCCEEEeCC
Confidence 45566667788899888854333211 111 1123337778888999998754
No 367
>PRK10799 metal-binding protein; Provisional
Probab=22.58 E-value=1.3e+02 Score=22.77 Aligned_cols=27 Identities=11% Similarity=0.274 Sum_probs=19.6
Q ss_pred EEEEEEecCchhHHHHHHHhcCCCEEE
Q 031262 75 VEALVIQGPKLGTVMSQVRKLEVSVLV 101 (162)
Q Consensus 75 ~~~~v~~g~~~~~I~~~a~~~~~dliV 101 (162)
+.-+...-|+...+++.|.+.++|+||
T Consensus 35 v~~I~~alD~t~~vi~~A~~~~~dlIi 61 (247)
T PRK10799 35 VQKIVTGVTASQALLDEAVRLQADAVI 61 (247)
T ss_pred ccEEEEEeCCCHHHHHHHHHCCCCEEE
Confidence 444455567777888888888888887
No 368
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=22.51 E-value=1.4e+02 Score=24.89 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=36.2
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
++.|....++.++|-+||-+....-- ..|++. .+-+.++.+||+.+-.
T Consensus 325 g~eIa~~Lk~dgVDAvILtstCgtCt---rcga~m-----~keiE~~GIPvV~i~~ 372 (431)
T TIGR01917 325 AKEFSKELLAAGVDAVILTSTUGTCT---RCGATM-----VKEIERAGIPVVHICT 372 (431)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCcch---hHHHHH-----HHHHHHcCCCEEEEee
Confidence 67899999999999999998743211 245666 6678889999988744
No 369
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=22.46 E-value=3.4e+02 Score=20.35 Aligned_cols=47 Identities=17% Similarity=0.056 Sum_probs=23.9
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEcc
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQ 104 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~ 104 (162)
..+.+.+++.+.+ .|..+.+.-..+++ ...+++.+...++|-|++..
T Consensus 15 ~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~ 63 (288)
T cd01538 15 IRDRPNFEAALKE--LGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAP 63 (288)
T ss_pred HHHHHHHHHHHHH--cCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 4455555555555 45444433333333 23444444556777777654
No 370
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=22.44 E-value=1.1e+02 Score=25.18 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=24.3
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEE------EecCchhHHHHHHH-hcCCCEEEEccCC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALV------IQGPKLGTVMSQVR-KLEVSVLVLGQKK 106 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v------~~g~~~~~I~~~a~-~~~~dliVmG~~~ 106 (162)
+.+.+.+++..+.+.+. +-.++ .-|+..+++++.++ +.++.++.+-+.|
T Consensus 71 ~kL~~~I~~~~~~~~p~--~I~v~~tC~~~iIGdDi~~v~~~~~~~~~~~vi~v~t~g 126 (430)
T cd01981 71 EKVVENITRKDKEEKPD--LIVLTPTCTSSILQEDLQNFVRAAGLSSKSPVLPLDVNH 126 (430)
T ss_pred HHHHHHHHHHHHhcCCC--EEEEeCCccHHHHhhCHHHHHHHhhhccCCCeEEecCCC
Confidence 45666666666654333 21111 12555555555544 3445566655555
No 371
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=22.40 E-value=3.6e+02 Score=20.66 Aligned_cols=45 Identities=7% Similarity=0.075 Sum_probs=31.6
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
.+.+++..+..++|..++|.|....-...+ ...+..++.|++...
T Consensus 71 g~~~~~~ln~~g~D~~~lGNHefd~G~~~l----------~~~~~~~~~p~l~aN 115 (281)
T cd07409 71 GNADAEFMNLLGYDAMTLGNHEFDDGVEGL----------APFLNNLKFPVLSAN 115 (281)
T ss_pred ChHHHHHHHhcCCCEEEeccccccCCHHHH----------HHHHHhCCCCEEEEe
Confidence 477788899999999999988754211111 445667788888754
No 372
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.39 E-value=3.2e+02 Score=19.98 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=7.8
Q ss_pred HHHHHHhcCCCEEEEc
Q 031262 88 VMSQVRKLEVSVLVLG 103 (162)
Q Consensus 88 I~~~a~~~~~dliVmG 103 (162)
.++...+.++|-|++.
T Consensus 47 ~i~~l~~~~~dgiii~ 62 (270)
T cd06296 47 WVERLSARRTDGVILV 62 (270)
T ss_pred HHHHHHHcCCCEEEEe
Confidence 3344444556655544
No 373
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein. The model describes the molybdate ABC transporter periplasmic binding protein in bacteria and archae. Several of the periplasmic receptors constitute a diverse class of binding proteins that differ widely in size, sequence and ligand specificity. It has been shown experimentally by radioactive labeling that ModA represent hydrophylioc periplasmic-binding protein in gram-negative organisms and its counterpart in gram-positive organisms is a lipoprotein. The other components of the system include the ModB, an integral membrane protein and ModC the ATP-binding subunit. Invariably almost all of them display a common beta/alpha folding motif and have similar tertiary structures consisting of two globular domains.
Probab=22.20 E-value=2.2e+02 Score=20.42 Aligned_cols=33 Identities=6% Similarity=-0.004 Sum_probs=18.8
Q ss_pred CCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccC
Q 031262 71 PEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 71 ~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~ 105 (162)
.++++ .+..|...+.+-+..+...+|+++.+..
T Consensus 19 ~gi~V--~~~~~gs~~l~~~l~~~~~aDv~~~~~~ 51 (216)
T TIGR01256 19 TGNKV--VFSFGSSGTLYTQIENGAPADLFISADN 51 (216)
T ss_pred hCCeE--EEEeCChHHHHHHHHcCCCCcEEEECCH
Confidence 34444 4445555444444444345999999864
No 374
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=22.16 E-value=4.1e+02 Score=21.19 Aligned_cols=22 Identities=5% Similarity=-0.026 Sum_probs=16.7
Q ss_pred CChhhHHHHHHHHHhccCCCCE
Q 031262 11 QTSHSKHAMMWALTHVTNKGDL 32 (162)
Q Consensus 11 ~S~~s~~al~~A~~~a~~~~~~ 32 (162)
.++....|+++|+..++..+.+
T Consensus 9 ~~~~~~~af~~a~~~~n~~~~~ 30 (370)
T cd06389 9 GADQEYSAFRVGMVQFSTSEFR 30 (370)
T ss_pred CchHHHHHHHHHHHHhcccCce
Confidence 4567789999999998766433
No 375
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.15 E-value=2.3e+02 Score=19.99 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=30.6
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCC
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPP 41 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~ 41 (162)
|+.||-..+=++..+..|+.+.+.+. +++++..++-++.
T Consensus 2 ~~~kit~~L~F~~~AeeA~~fY~s~F--pdS~i~~i~r~p~ 40 (151)
T COG3865 2 MMPKITPFLWFDGNAEEAMNFYLSTF--PDSKIIGITRYPE 40 (151)
T ss_pred CCCcceeEEEECCcHHHHHHHHHHhC--CcceeeeeeecCC
Confidence 56777777777788999999999887 6777777776644
No 376
>PLN02151 trehalose-phosphatase
Probab=22.14 E-value=4.3e+02 Score=21.45 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=34.8
Q ss_pred cchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCC
Q 031262 54 CCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
...++.+.+++++.. ..+.++.|...+.+-+... -..+.+.|.||.
T Consensus 121 ~~~~~~~aL~~La~~------~~vaIvSGR~~~~l~~~~~--~~~l~laGsHG~ 166 (354)
T PLN02151 121 MSKKMRNTVRKLAKC------FPTAIVSGRCREKVSSFVK--LTELYYAGSHGM 166 (354)
T ss_pred CCHHHHHHHHHHhcC------CCEEEEECCCHHHHHHHcC--CccceEEEeCCc
Confidence 456777778887743 2467778999998888876 457889999985
No 377
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.87 E-value=4.8e+02 Score=21.90 Aligned_cols=89 Identities=9% Similarity=-0.003 Sum_probs=42.9
Q ss_pred EEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCch
Q 031262 6 MVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKL 85 (162)
Q Consensus 6 lv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~ 85 (162)
++...|+..+-.+...|..+. ..+..+.++... .. .-...+.++..++. .++.+.......+..
T Consensus 246 LVGptGvGKTTTiaKLA~~L~-~~GkkVglI~aD-t~------------RiaAvEQLk~yae~--lgipv~v~~d~~~L~ 309 (436)
T PRK11889 246 LIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTD-HS------------RIGTVQQLQDYVKT--IGFEVIAVRDEAAMT 309 (436)
T ss_pred EECCCCCcHHHHHHHHHHHHH-HcCCcEEEEecC-Cc------------chHHHHHHHHHhhh--cCCcEEecCCHHHHH
Confidence 445566666666666666554 334444444321 11 11233444455444 344433211111113
Q ss_pred hHHHHHHHhcCCCEEEEccCCCCcc
Q 031262 86 GTVMSQVRKLEVSVLVLGQKKHSAF 110 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~~~~~~ 110 (162)
++|-...++.++|+|++-+-|++..
T Consensus 310 ~aL~~lk~~~~~DvVLIDTaGRs~k 334 (436)
T PRK11889 310 RALTYFKEEARVDYILIDTAGKNYR 334 (436)
T ss_pred HHHHHHHhccCCCEEEEeCccccCc
Confidence 3333333334689999999887653
No 378
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=21.87 E-value=2.9e+02 Score=20.81 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=21.8
Q ss_pred CcEEEEEeCCChhh-HHHHHHHHHhccCCCCEEEEEEEe
Q 031262 2 RKRVMVVVDQTSHS-KHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s-~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
||+||+|+-|..+. -.-.-||+..-...-+++++++.-
T Consensus 1 mk~iLlatlG~sPqVVTETL~aL~~~g~~p~EV~vitT~ 39 (224)
T PF09623_consen 1 MKNILLATLGTSPQVVTETLYALAQQGEIPDEVHVITTR 39 (224)
T ss_pred CceEEEEecCCCchHHHHHHHHHHcCCCCCCEEEEEECC
Confidence 78999999876544 223333443222234677777644
No 379
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=21.84 E-value=3.1e+02 Score=19.62 Aligned_cols=73 Identities=14% Similarity=0.049 Sum_probs=36.2
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
.++.+.++..+++ .++++...-..+++ ....++.....++|.+|+......... . ...+.+.++
T Consensus 15 ~~~~~g~~~~~~~--~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~-------~-----~~~l~~~~i 80 (264)
T cd01537 15 AQVLKGIEEAAKA--AGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPT-------I-----VKLARKAGI 80 (264)
T ss_pred HHHHHHHHHHHHH--cCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh-------H-----HHHhhhcCC
Confidence 4555555655555 45444433323333 334444444457787777654322111 1 233456777
Q ss_pred eEEEEecCC
Q 031262 134 LTVGVRKQS 142 (162)
Q Consensus 134 pVlvv~~~~ 142 (162)
|++.+....
T Consensus 81 p~v~~~~~~ 89 (264)
T cd01537 81 PVVLVDRDI 89 (264)
T ss_pred CEEEeccCC
Confidence 877775543
No 380
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=21.83 E-value=3.3e+02 Score=20.01 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=36.7
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEe--cCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQ--GPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKA 131 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~--g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~ 131 (162)
..+.+.+++.+++ .+.++.+.... +++ ....++...+.++|-||+........... . + .+...
T Consensus 15 ~~~~~gi~~~~~~--~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~-----~-----~-~~~~~ 81 (275)
T cd06320 15 RSLKEGYENEAKK--LGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPA-----V-----E-RAKKK 81 (275)
T ss_pred HHHHHHHHHHHHH--hCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHH-----H-----H-HHHHC
Confidence 4555666666666 45444433222 233 23445555556788777764322211111 1 2 23556
Q ss_pred CceEEEEecC
Q 031262 132 DCLTVGVRKQ 141 (162)
Q Consensus 132 ~~pVlvv~~~ 141 (162)
++||+.+...
T Consensus 82 ~iPvV~~~~~ 91 (275)
T cd06320 82 GIPVVNVNDK 91 (275)
T ss_pred CCeEEEECCC
Confidence 7888887553
No 381
>PRK11914 diacylglycerol kinase; Reviewed
Probab=21.80 E-value=3.3e+02 Score=21.07 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=16.2
Q ss_pred CCCeEEEEEEec-CchhHHHHHHHhcCCCEEEEc
Q 031262 71 PEVEVEALVIQG-PKLGTVMSQVRKLEVSVLVLG 103 (162)
Q Consensus 71 ~~v~~~~~v~~g-~~~~~I~~~a~~~~~dliVmG 103 (162)
.+.++.....+. ...+.+.+.+.+.++|+||+.
T Consensus 38 ~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~ 71 (306)
T PRK11914 38 RGVDVVEIVGTDAHDARHLVAAALAKGTDALVVV 71 (306)
T ss_pred cCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 344454433322 225555655555666755443
No 382
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=21.70 E-value=2.1e+02 Score=17.62 Aligned_cols=36 Identities=8% Similarity=0.107 Sum_probs=23.7
Q ss_pred CCCeEEEEEE-ecCchhHHHHHHHhcCCCEEEEccCC
Q 031262 71 PEVEVEALVI-QGPKLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 71 ~~v~~~~~v~-~g~~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
.|++++..+. .++....+.+..++.++|+||--...
T Consensus 29 ~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~ 65 (90)
T smart00851 29 AGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYP 65 (90)
T ss_pred CCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCc
Confidence 4666653321 12223569999999999999986653
No 383
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.58 E-value=3.9e+02 Score=20.76 Aligned_cols=13 Identities=15% Similarity=0.059 Sum_probs=8.3
Q ss_pred HHhhhhCCceEEE
Q 031262 125 DQCIKKADCLTVG 137 (162)
Q Consensus 125 ~~v~~~~~~pVlv 137 (162)
+++-.+++.||++
T Consensus 198 ~~vr~~~~~Pv~v 210 (265)
T COG0159 198 KRVRKYTDVPVLV 210 (265)
T ss_pred HHHHHhcCCCeEE
Confidence 5555566777765
No 384
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.49 E-value=3.4e+02 Score=19.98 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=37.5
Q ss_pred hHHHHHHHHhHHHhC-CCCeEEEEEEec--Cc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhh
Q 031262 56 PYLANSLGSLCKACK-PEVEVEALVIQG--PK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKK 130 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~-~~v~~~~~v~~g--~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~ 130 (162)
..+.+.+++.+.+.. .+..+...+..+ ++ ...+++.....++|-|++.......+... . +. +..
T Consensus 15 ~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~~~~~~~-----i-----~~-~~~ 83 (274)
T cd06311 15 AGIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPFESAPLTQP-----V-----AK-AKK 83 (274)
T ss_pred HHHHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHH-----H-----HH-HHH
Confidence 445555555555531 112244444332 33 33555656667788877765432221111 1 22 356
Q ss_pred CCceEEEEecC
Q 031262 131 ADCLTVGVRKQ 141 (162)
Q Consensus 131 ~~~pVlvv~~~ 141 (162)
..+||+.+...
T Consensus 84 ~gIpvV~~d~~ 94 (274)
T cd06311 84 AGIFVVVVDRG 94 (274)
T ss_pred CCCeEEEEcCC
Confidence 78888888553
No 385
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=21.31 E-value=1.3e+02 Score=20.80 Aligned_cols=44 Identities=5% Similarity=0.109 Sum_probs=30.0
Q ss_pred ecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 81 QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 81 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
.+++.+.|.++|.+++ -.++.+.... + .+-++..++||+.++++
T Consensus 83 ~~~aDe~i~~~a~~~~--~~iVaTnD~e-L--------------k~rlr~~GIPvi~lr~r 126 (136)
T COG1412 83 GRYADECLLEAALKHG--RYIVATNDKE-L--------------KRRLRENGIPVITLRQR 126 (136)
T ss_pred CCChHHHHHHHHHHcC--CEEEEeCCHH-H--------------HHHHHHcCCCEEEEeCC
Confidence 4667999999999885 4445554422 2 23345559999999865
No 386
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=21.20 E-value=1.9e+02 Score=25.58 Aligned_cols=97 Identities=12% Similarity=0.140 Sum_probs=52.7
Q ss_pred cccchHHHHHHHHhHHHhC--CCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhh
Q 031262 52 SACCPYLANSLGSLCKACK--PEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIK 129 (162)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~--~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~ 129 (162)
+...+.+...+.+...... .++.+++.=+.-.. ..-....+..++++-.=..+.+ ++.|+.+ ..+++
T Consensus 32 q~~E~~L~~af~e~~~~~~~~~n~tVqiln~t~~~--~~~~~~~~~~V~i~~aVr~~~~----~LnGt~~-----S~lL~ 100 (684)
T PF12877_consen 32 QRMEQGLEMAFAEVRKRSQESSNLTVQILNITQSV--SVSQAPRSGPVSITYAVRNGSG----FLNGTEV-----SELLR 100 (684)
T ss_pred HHHHHHHHHHHHHHHHhhcCCccEEEEEEeeeccc--cccccccCCCeEEEEEEecCce----eeccHHH-----HHHHH
Confidence 3444555555655555433 33444433221110 0011222445566666665544 5568888 77777
Q ss_pred hC---------CceEEEEecCCCCCCcEEEeceeeceeeec
Q 031262 130 KA---------DCLTVGVRKQSKGMGGYIISTRWQKNFWLL 161 (162)
Q Consensus 130 ~~---------~~pVlvv~~~~~~~~~~~~~~~~~~~~~~~ 161 (162)
+. .-|++.|-.+... -.+.++.-.++||+.
T Consensus 101 ~Ls~~~~~fyl~~P~l~IAEp~~Y--p~Ln~S~~~r~~WV~ 139 (684)
T PF12877_consen 101 QLSAVEFSFYLGYPPLQIAEPFHY--PNLNTSQLLRSSWVR 139 (684)
T ss_pred hhhhhheeeeecCCceeecccccc--CcccchhhhHHHHHH
Confidence 66 4577777666653 346667778999974
No 387
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=21.12 E-value=4.8e+02 Score=21.56 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=31.4
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
+.+.+.+.+-+.+ .|+.++..-...+....|.+.+. +++-+|+|+..
T Consensus 261 ~~ma~aiaegl~~--~gv~v~~~~~~~~~~~eI~~~i~--~a~~~vvGsPT 307 (388)
T COG0426 261 EKMAQAIAEGLMK--EGVDVEVINLEDADPSEIVEEIL--DAKGLVVGSPT 307 (388)
T ss_pred HHHHHHHHHHhhh--cCCceEEEEcccCCHHHHHHHHh--hcceEEEecCc
Confidence 4444444444444 67777766666667778888887 66888888875
No 388
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=21.09 E-value=3.6e+02 Score=20.14 Aligned_cols=118 Identities=15% Similarity=0.235 Sum_probs=57.0
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCC-CCCCCc------------------------cc-----
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPN-TSHHDS------------------------SA----- 53 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~-~~~~~~------------------------~~----- 53 (162)
|+++-+.+-++|.-|+..|.+. ..-..+++..+..... ....+. ..
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~~~~~~~l 77 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ----HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDEEDYVEDL 77 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT-----EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---CCCHHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHh----CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCccchhhHHH
Confidence 5566689999999999888765 2234566666543332 111110 11
Q ss_pred -----------------cchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccc
Q 031262 54 -----------------CCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCG 116 (162)
Q Consensus 54 -----------------~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~G 116 (162)
..+....+.++.|.+ .|++...-+ .+.+.+.+++..-+.+.+.+|+..... .+..-++|
T Consensus 78 ~~~l~~~~v~~vv~GdI~~~~~r~~~e~vc~~--lGl~~~~PL-W~~d~~~ll~e~i~~Gf~aiIv~V~~~-~L~~~~LG 153 (218)
T PF01902_consen 78 KEALKELKVEAVVFGDIDSEYQRNWVERVCER--LGLEAVFPL-WGRDREELLREFIESGFEAIIVKVDAD-GLDESFLG 153 (218)
T ss_dssp HHHHCTC--SEEE--TTS-HHHHHHHHHHHHH--CT-EEE-TT-TT--HHHHHHHHHHTT-EEEEEEEEST-T--GGGTT
T ss_pred HHHHHHcCCCEEEECcCCcHHHHHHHHHHHHH--cCCEEEecc-cCCCHHHHHHHHHHCCCeEEEEEEecc-CCChHHCC
Confidence 112222333445555 454443333 355555555555556888888887754 36677788
Q ss_pred cCCcchhHHHhhh
Q 031262 117 TSSSEEFVDQCIK 129 (162)
Q Consensus 117 s~~~~~~~~~v~~ 129 (162)
..-+.+..+.+..
T Consensus 154 r~l~~e~i~~L~~ 166 (218)
T PF01902_consen 154 RELDRELIEELPE 166 (218)
T ss_dssp -B--HHHHHHHHH
T ss_pred CCccHHHHHHHHH
Confidence 8876444455444
No 389
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=21.09 E-value=2.8e+02 Score=22.42 Aligned_cols=44 Identities=7% Similarity=0.104 Sum_probs=26.2
Q ss_pred HHHHHHhHHHhCCCCeEEEEE-EecCc----hhHHHHHHHhcCCCEEE-Ecc
Q 031262 59 ANSLGSLCKACKPEVEVEALV-IQGPK----LGTVMSQVRKLEVSVLV-LGQ 104 (162)
Q Consensus 59 ~~~~~~~~~~~~~~v~~~~~v-~~g~~----~~~I~~~a~~~~~dliV-mG~ 104 (162)
.+.+.+..++ .++++.... .+.+| .+.+.+.+++.++|.|| +|.
T Consensus 44 ~~~v~~~L~~--~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 93 (383)
T cd08186 44 WDKVEPALDE--HGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGG 93 (383)
T ss_pred HHHHHHHHHH--cCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3444444444 455554332 23333 56777888899999987 665
No 390
>PRK08194 tartrate dehydrogenase; Provisional
Probab=21.04 E-value=3.5e+02 Score=21.95 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHhccCCCCEEEEEEEeC
Q 031262 14 HSKHAMMWALTHVTNKGDLLTLLHVVP 40 (162)
Q Consensus 14 ~s~~al~~A~~~a~~~~~~l~l~hv~~ 40 (162)
.+++..++|.++|.+.+.+++++|=-.
T Consensus 162 ~~eRI~r~Af~~A~~r~~~Vt~v~KaN 188 (352)
T PRK08194 162 GTERAMRYAFELAAKRRKHVTSATKSN 188 (352)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCcc
Confidence 567888899998877666799988543
No 391
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=20.91 E-value=4.1e+02 Score=20.69 Aligned_cols=72 Identities=10% Similarity=0.084 Sum_probs=43.5
Q ss_pred cchHHHHHHHHhHHHhCCCC-------eEE-EEEEe--cCchhHHHHHHHhc--CCCEEEEccCCCCcccccccccCCcc
Q 031262 54 CCPYLANSLGSLCKACKPEV-------EVE-ALVIQ--GPKLGTVMSQVRKL--EVSVLVLGQKKHSAFINCFCGTSSSE 121 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v-------~~~-~~v~~--g~~~~~I~~~a~~~--~~dliVmG~~~~~~~~~~~~Gs~~~~ 121 (162)
...++.+.+++++++..-.+ ..+ .++.. |...++|++..+.. +++..++-+...+ .
T Consensus 62 ~~~~L~~~L~~l~~~l~l~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~~----------~-- 129 (286)
T PRK06027 62 NLETLRADFAALAEEFEMDWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDD----------L-- 129 (286)
T ss_pred CHHHHHHHHHHHHHHhCCEEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcChh----------H--
Confidence 45777778888887742111 111 22223 44589999988764 4677777665421 2
Q ss_pred hhHHHhhhhCCceEEEEec
Q 031262 122 EFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 122 ~~~~~v~~~~~~pVlvv~~ 140 (162)
..++++..+|+..++.
T Consensus 130 ---~~lA~~~gIp~~~~~~ 145 (286)
T PRK06027 130 ---RSLVERFGIPFHHVPV 145 (286)
T ss_pred ---HHHHHHhCCCEEEecc
Confidence 4456777888877654
No 392
>PLN02347 GMP synthetase
Probab=20.89 E-value=5.5e+02 Score=22.14 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=29.2
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCC
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPP 42 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~ 42 (162)
.+++++++.|--+|.-++..+.+. .|.+++.+++....
T Consensus 229 ~~~vvvalSGGVDSsvla~l~~~a---lG~~v~av~id~g~ 266 (536)
T PLN02347 229 DEHVICALSGGVDSTVAATLVHKA---IGDRLHCVFVDNGL 266 (536)
T ss_pred CCeEEEEecCChhHHHHHHHHHHH---hCCcEEEEEEeCCC
Confidence 357999999998888887777663 26789999987544
No 393
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=20.64 E-value=4.5e+02 Score=21.12 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHhccCCCCEEEEEEEeCCCCC-CCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHH
Q 031262 14 HSKHAMMWALTHVTNKGDLLTLLHVVPPPKP-NTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQV 92 (162)
Q Consensus 14 ~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a 92 (162)
..+.+++.|..+ +..++.+.-..++.+-+. +...+. .++-++.+++.+++ .|+.+-+.+.+-...+.+
T Consensus 105 s~e~~~~~A~~l-k~~ga~~~r~~~fKpRTsp~sf~G~----g~~gL~~L~~~~~~--~Gl~v~tev~d~~~~~~l---- 173 (335)
T PRK08673 105 SEEQILEIARAV-KEAGAQILRGGAFKPRTSPYSFQGL----GEEGLKLLAEAREE--TGLPIVTEVMDPRDVELV---- 173 (335)
T ss_pred CHHHHHHHHHHH-HHhchhhccCcEecCCCCCcccccc----cHHHHHHHHHHHHH--cCCcEEEeeCCHHHHHHH----
Confidence 345566666665 345566554555543322 222222 24555567777777 577777666544444444
Q ss_pred HhcCCCEEEEccCCCC
Q 031262 93 RKLEVSVLVLGQKKHS 108 (162)
Q Consensus 93 ~~~~~dliVmG~~~~~ 108 (162)
.+. +|++=+|++.-.
T Consensus 174 ~~~-vd~lqIgAr~~~ 188 (335)
T PRK08673 174 AEY-VDILQIGARNMQ 188 (335)
T ss_pred HHh-CCeEEECccccc
Confidence 344 699999998643
No 394
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=20.61 E-value=4.8e+02 Score=21.39 Aligned_cols=44 Identities=16% Similarity=0.030 Sum_probs=30.5
Q ss_pred EEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 79 VIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 79 v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
++.......+.+.+++.++|+++=++++ .++.++..+|.+-+..
T Consensus 354 ~v~~~d~~el~~~i~~~~pdliig~~~~------------------~~~a~~~~ip~i~~~~ 397 (428)
T cd01965 354 VVFVGDLWDLESLAKEEPVDLLIGNSHG------------------RYLARDLGIPLVRVGF 397 (428)
T ss_pred EEECCCHHHHHHHhhccCCCEEEECchh------------------HHHHHhcCCCEEEecC
Confidence 3344556788889999999998876654 4556667777765543
No 395
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=20.56 E-value=1e+02 Score=22.06 Aligned_cols=37 Identities=11% Similarity=0.235 Sum_probs=20.7
Q ss_pred cEEEEEeCCChhhHHHHHHHHH-hccCCCCEEEEEEEe
Q 031262 3 KRVMVVVDQTSHSKHAMMWALT-HVTNKGDLLTLLHVV 39 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~-~a~~~~~~l~l~hv~ 39 (162)
|.|+|.-.++...+..+..++- .+.+.+.++.++-=+
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi 38 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPI 38 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeee
Confidence 4566666666666666555543 333566676655543
No 396
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=20.56 E-value=2.7e+02 Score=18.53 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=22.6
Q ss_pred HHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHh--cCCCEEEEc
Q 031262 59 ANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRK--LEVSVLVLG 103 (162)
Q Consensus 59 ~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~--~~~dliVmG 103 (162)
...+.+++++ .+.++.......|..+.|.+..++ .++|+||..
T Consensus 20 ~~~l~~~l~~--~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliitt 64 (135)
T smart00852 20 GPALAELLTE--LGIEVTRYVIVPDDKEAIKEALREALERADLVITT 64 (135)
T ss_pred HHHHHHHHHH--CCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEc
Confidence 3455666666 355554333334554545544432 258987765
No 397
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=20.52 E-value=97 Score=25.03 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=24.1
Q ss_pred CCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 96 EVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 96 ~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
.+|.+|+|+-. -||++ -+.+.+..+.|+++-+.+.
T Consensus 3 ~~DVvIVGaGP--------AGs~a-----A~~la~~G~~VlvlEk~~~ 37 (396)
T COG0644 3 EYDVVIVGAGP--------AGSSA-----ARRLAKAGLDVLVLEKGSE 37 (396)
T ss_pred eeeEEEECCch--------HHHHH-----HHHHHHcCCeEEEEecCCC
Confidence 56888888843 35666 6667777788888866433
No 398
>COG5049 XRN1 5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and chromosome partitioning / Translation]
Probab=20.34 E-value=1.2e+02 Score=27.31 Aligned_cols=55 Identities=24% Similarity=0.454 Sum_probs=37.6
Q ss_pred ecCchhHHHHHHHhc-----------------CCCEEEEccCCCCcc-----cccccccCCcchhHHHhhhhCCceEEEE
Q 031262 81 QGPKLGTVMSQVRKL-----------------EVSVLVLGQKKHSAF-----INCFCGTSSSEEFVDQCIKKADCLTVGV 138 (162)
Q Consensus 81 ~g~~~~~I~~~a~~~-----------------~~dliVmG~~~~~~~-----~~~~~Gs~~~~~~~~~v~~~~~~pVlvv 138 (162)
.|.....|.++++.. ++|||.+|-..+.+- +..++|+.+ -++..|.-+-.
T Consensus 187 PGEGEHKIM~FIRsqkaqp~ynpNT~HciYGLDADLImLGLstH~PHF~iLREdVff~~~~--------~~k~k~~~~g~ 258 (953)
T COG5049 187 PGEGEHKIMNFIRSQKAQPSYNPNTRHCIYGLDADLIMLGLSTHEPHFLILREDVFFGSKS--------RRKRKCTKCGR 258 (953)
T ss_pred CCccHHHHHHHHHhcccCCCcCCCceeEEeccCccceeeecccCCCeeEEeechhccCccc--------ccccccccccc
Confidence 355688999999866 679999998766442 357888887 35555655554
Q ss_pred ecCCC
Q 031262 139 RKQSK 143 (162)
Q Consensus 139 ~~~~~ 143 (162)
...++
T Consensus 259 t~~~~ 263 (953)
T COG5049 259 TGHSD 263 (953)
T ss_pred cccch
Confidence 44444
No 399
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=20.28 E-value=4.4e+02 Score=20.79 Aligned_cols=40 Identities=25% Similarity=0.266 Sum_probs=25.3
Q ss_pred CCCEEEEccCCC---CcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 96 EVSVLVLGQKKH---SAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 96 ~~dliVmG~~~~---~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
++|.+++|+..- |.+-+. .|+.. + --++++.++||+++-+
T Consensus 188 ~vd~VivGAd~v~~nG~v~nk-iGT~~---~-A~~Ak~~~vPv~V~a~ 230 (310)
T PRK08535 188 DVDKVVVGADAITANGAVINK-IGTSQ---I-ALAAHEARVPFMVAAE 230 (310)
T ss_pred hCCEEEECccEEecCCCEEeH-HhHHH---H-HHHHHHhCCCEEEecc
Confidence 389999999863 222221 33332 2 4456777999999855
No 400
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=20.27 E-value=3.6e+02 Score=19.83 Aligned_cols=51 Identities=8% Similarity=0.090 Sum_probs=32.2
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
...+.+..++..+|.|++......... -| ...+..+.+.+.++.||+....
T Consensus 155 ~~~~~~~~~~~G~d~i~i~~i~~~g~~---~g--~~~~~~~~i~~~~~ipvia~GG 205 (232)
T TIGR03572 155 PVEWAREAEQLGAGEILLNSIDRDGTM---KG--YDLELIKTVSDAVSIPVIALGG 205 (232)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCc---CC--CCHHHHHHHHhhCCCCEEEECC
Confidence 345667777888998888775433211 11 1223447777888999998753
No 401
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=20.24 E-value=4.4e+02 Score=21.49 Aligned_cols=40 Identities=10% Similarity=0.122 Sum_probs=23.1
Q ss_pred HHHHHhHHHhCCCCeEEEE-EEecCc----hhHHHHHHHhcCCCEEE
Q 031262 60 NSLGSLCKACKPEVEVEAL-VIQGPK----LGTVMSQVRKLEVSVLV 101 (162)
Q Consensus 60 ~~~~~~~~~~~~~v~~~~~-v~~g~~----~~~I~~~a~~~~~dliV 101 (162)
+.+.+..++ .++++.+. -..++| .+...+.+++.++|.||
T Consensus 67 ~~v~~~L~~--~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~Ii 111 (395)
T PRK15454 67 AGLTRSLAV--KGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVI 111 (395)
T ss_pred HHHHHHHHH--cCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEE
Confidence 334444444 46555433 124455 45666778899999876
No 402
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=20.23 E-value=2e+02 Score=21.13 Aligned_cols=49 Identities=8% Similarity=0.041 Sum_probs=28.4
Q ss_pred HHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 90 SQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 90 ~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
..+.+.++|+++++.++.........+.. .+.+..+....++||+....
T Consensus 133 ~~a~~~G~d~i~~~~~g~t~~~~~~~~~~--~~~i~~i~~~~~iPvia~GG 181 (221)
T PRK01130 133 LAAQKLGFDFIGTTLSGYTEETKKPEEPD--FALLKELLKAVGCPVIAEGR 181 (221)
T ss_pred HHHHHcCCCEEEcCCceeecCCCCCCCcC--HHHHHHHHHhCCCCEEEECC
Confidence 56777789999886555432221111211 23336677777899888643
No 403
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=20.21 E-value=2.9e+02 Score=18.75 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=19.8
Q ss_pred cCchhHHHHHHHhc--------CCCEEEEccCC--CCcccccccc
Q 031262 82 GPKLGTVMSQVRKL--------EVSVLVLGQKK--HSAFINCFCG 116 (162)
Q Consensus 82 g~~~~~I~~~a~~~--------~~dliVmG~~~--~~~~~~~~~G 116 (162)
+...+.+.+...+. +..+.++|..+ .+.+-+.+.|
T Consensus 80 ~~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 80 PFGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhc
Confidence 44455555555432 34566888865 4555555555
No 404
>TIGR00035 asp_race aspartate racemase.
Probab=20.12 E-value=1.4e+02 Score=22.21 Aligned_cols=16 Identities=0% Similarity=0.138 Sum_probs=10.9
Q ss_pred HHhcCCCEEEEccCCC
Q 031262 92 VRKLEVSVLVLGQKKH 107 (162)
Q Consensus 92 a~~~~~dliVmG~~~~ 107 (162)
.++.++|+|||+....
T Consensus 71 L~~~g~d~iviaCNTa 86 (229)
T TIGR00035 71 LENAGADFIIMPCNTA 86 (229)
T ss_pred HHHcCCCEEEECCccH
Confidence 3356788888887653
No 405
>TIGR03280 methan_mark_11 putative methanogenesis marker protein 11. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.10 E-value=4.4e+02 Score=20.79 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=10.1
Q ss_pred CcEEEEEeCCCh
Q 031262 2 RKRVMVVVDQTS 13 (162)
Q Consensus 2 ~~~Ilv~vD~S~ 13 (162)
+.++++++|+++
T Consensus 132 ~~kv~IGIDDTD 143 (292)
T TIGR03280 132 LEKVLIGIDDTD 143 (292)
T ss_pred ceEEEEEEcCCC
Confidence 578999999865
No 406
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=20.09 E-value=2.9e+02 Score=22.50 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=27.3
Q ss_pred HHHHHHHhHHHhCCCCeEEEEE-EecCc----hhHHHHHHHhcCCCEEE-EccC
Q 031262 58 LANSLGSLCKACKPEVEVEALV-IQGPK----LGTVMSQVRKLEVSVLV-LGQK 105 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v-~~g~~----~~~I~~~a~~~~~dliV-mG~~ 105 (162)
..+.+.+..++ .++++...- .+.+| .+.+++.+++.++|.|| +|.-
T Consensus 37 ~~~~v~~~L~~--~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 88 (398)
T cd08178 37 YVDKVIDVLKR--RGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGG 88 (398)
T ss_pred cHHHHHHHHHH--CCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 33444444444 455554321 23444 55777888899999998 7763
No 407
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=20.09 E-value=4.1e+02 Score=21.19 Aligned_cols=96 Identities=13% Similarity=0.105 Sum_probs=57.3
Q ss_pred EEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHh-CCCCeEEEEEEecCch
Q 031262 7 VVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKAC-KPEVEVEALVIQGPKL 85 (162)
Q Consensus 7 v~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~v~~g~~~ 85 (162)
++-..+....++++.|++..+..|-++++-..+.....+ ..+. . .+++.++.+.+ .+++++-.-++-|...
T Consensus 16 IaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~-~a~s----~---~~R~~dL~~af~d~~vk~Il~~rGGygs 87 (313)
T COG1619 16 IAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQY-FAGS----D---EERAEDLMSAFSDPDVKAILCVRGGYGS 87 (313)
T ss_pred EecCcccchHHHHHHHHHHHHHcCCEEEechhhhhcccc-ccCC----H---HHHHHHHHHHhcCCCCeEEEEcccCCCh
Confidence 444444447889999999999899888776655433222 1111 1 23333333332 2677777777788888
Q ss_pred hHHHHHHHh---cCCCEEEEccCCCCcc
Q 031262 86 GTVMSQVRK---LEVSVLVLGQKKHSAF 110 (162)
Q Consensus 86 ~~I~~~a~~---~~~dliVmG~~~~~~~ 110 (162)
..|+.+..- .+-.-+++|-..-+.+
T Consensus 88 ~rlLp~ld~~~i~~~pKifiGySDiTal 115 (313)
T COG1619 88 NRLLPYLDYDLIRNHPKIFIGYSDITAL 115 (313)
T ss_pred hhhhhhcchHHHhcCCceEEEecHHHHH
Confidence 888777652 1235667776654433
No 408
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=20.01 E-value=2.8e+02 Score=19.75 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=23.9
Q ss_pred EEEEEecCc------hhHHHHHHHhcCCCEEEEccCCCC
Q 031262 76 EALVIQGPK------LGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 76 ~~~v~~g~~------~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
.+.+..|.. .+.+...+++.++|+++.|.+...
T Consensus 80 ~i~l~HG~~~~~~~~~~~~~~~~~~~~~dvii~GHTH~p 118 (178)
T cd07394 80 KIGLIHGHQVVPWGDPDSLAALQRQLDVDILISGHTHKF 118 (178)
T ss_pred EEEEEECCcCCCCCCHHHHHHHHHhcCCCEEEECCCCcc
Confidence 455666753 456677788899999999997644
Done!