Query 031262
Match_columns 162
No_of_seqs 120 out of 1399
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 18:32:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mjh_A Protein (ATP-binding do 100.0 6.3E-28 2.2E-32 170.2 13.9 134 1-141 4-160 (162)
2 3s3t_A Nucleotide-binding prot 100.0 1.7E-28 5.7E-33 170.2 10.1 134 1-139 4-146 (146)
3 3hgm_A Universal stress protei 100.0 2.4E-28 8.1E-33 169.5 9.4 131 1-138 1-147 (147)
4 2z08_A Universal stress protei 100.0 4.6E-28 1.6E-32 166.6 10.3 132 1-139 1-137 (137)
5 1tq8_A Hypothetical protein RV 99.9 2.9E-27 9.8E-32 167.9 12.9 134 1-142 16-160 (163)
6 3tnj_A Universal stress protei 99.9 1.2E-27 3.9E-32 166.8 10.6 133 1-141 5-148 (150)
7 2dum_A Hypothetical protein PH 99.9 2.9E-27 1E-31 168.1 12.9 136 1-143 4-159 (170)
8 3dlo_A Universal stress protei 99.9 1E-27 3.6E-32 168.8 9.1 130 1-139 23-155 (155)
9 3idf_A USP-like protein; unive 99.9 4.7E-27 1.6E-31 161.6 10.8 128 2-139 1-138 (138)
10 3fg9_A Protein of universal st 99.9 8.4E-27 2.9E-31 163.6 11.6 131 1-139 14-156 (156)
11 3fdx_A Putative filament prote 99.9 8.6E-27 2.9E-31 161.0 9.8 132 2-139 1-143 (143)
12 2gm3_A Unknown protein; AT3G01 99.9 8.1E-26 2.8E-30 161.5 12.5 136 1-143 4-166 (175)
13 1jmv_A USPA, universal stress 99.9 6.9E-26 2.4E-30 156.2 11.2 132 1-142 1-140 (141)
14 3olq_A Universal stress protei 99.9 5.3E-24 1.8E-28 164.8 12.2 147 1-152 6-163 (319)
15 3mt0_A Uncharacterized protein 99.9 1.6E-23 5.5E-28 160.6 13.0 134 1-152 6-141 (290)
16 3loq_A Universal stress protei 99.9 5E-24 1.7E-28 163.5 9.3 143 1-152 21-177 (294)
17 1q77_A Hypothetical protein AQ 99.9 1.4E-23 4.6E-28 144.2 9.5 123 1-139 3-138 (138)
18 3cis_A Uncharacterized protein 99.9 5.8E-23 2E-27 158.7 13.5 145 1-152 18-178 (309)
19 3mt0_A Uncharacterized protein 99.9 2.8E-23 9.7E-28 159.2 10.1 132 2-141 134-277 (290)
20 3ab8_A Putative uncharacterize 99.9 9.8E-24 3.3E-28 159.7 7.2 141 3-152 1-161 (268)
21 3loq_A Universal stress protei 99.9 1.3E-22 4.5E-27 155.6 13.0 124 2-143 170-293 (294)
22 3cis_A Uncharacterized protein 99.9 5.9E-22 2E-26 153.1 12.3 133 2-141 171-307 (309)
23 3olq_A Universal stress protei 99.9 3.7E-22 1.3E-26 154.4 10.1 135 2-143 156-308 (319)
24 3ab8_A Putative uncharacterize 99.8 9.2E-20 3.1E-24 137.8 9.4 115 2-139 154-268 (268)
25 2iel_A Hypothetical protein TT 95.8 0.17 5.8E-06 34.0 10.0 126 2-139 1-134 (138)
26 3a2k_A TRNA(Ile)-lysidine synt 95.3 0.13 4.3E-06 41.6 9.5 100 2-111 18-134 (464)
27 1wy5_A TILS, hypothetical UPF0 95.0 0.24 8.1E-06 37.9 10.0 96 2-108 24-137 (317)
28 1zun_A Sulfate adenylyltransfe 91.8 1.1 3.8E-05 34.4 8.8 93 3-108 47-158 (325)
29 2xry_A Deoxyribodipyrimidine p 91.4 0.48 1.6E-05 38.4 6.6 115 10-140 46-161 (482)
30 4b4k_A N5-carboxyaminoimidazol 90.8 2.5 8.7E-05 29.6 9.0 73 57-144 36-112 (181)
31 4grd_A N5-CAIR mutase, phospho 90.7 2.9 0.0001 29.1 9.1 72 58-144 27-102 (173)
32 3trh_A Phosphoribosylaminoimid 89.8 3.4 0.00012 28.7 8.9 72 58-144 21-96 (169)
33 3oow_A Phosphoribosylaminoimid 89.6 3.8 0.00013 28.4 9.1 72 58-144 20-95 (166)
34 3kuu_A Phosphoribosylaminoimid 89.3 4.2 0.00014 28.4 9.1 73 57-144 26-102 (174)
35 2ywx_A Phosphoribosylaminoimid 89.1 3.9 0.00013 28.0 8.7 67 59-140 15-82 (157)
36 3umv_A Deoxyribodipyrimidine p 89.0 0.51 1.8E-05 38.6 4.9 88 10-102 47-135 (506)
37 3ors_A N5-carboxyaminoimidazol 88.9 3.7 0.00012 28.4 8.4 71 58-143 18-92 (163)
38 1xmp_A PURE, phosphoribosylami 88.7 4.5 0.00016 28.1 9.0 71 58-143 26-100 (170)
39 3lp6_A Phosphoribosylaminoimid 88.6 3.9 0.00013 28.5 8.5 72 57-143 21-96 (174)
40 1o4v_A Phosphoribosylaminoimid 88.4 4.2 0.00014 28.6 8.5 72 57-143 27-102 (183)
41 1sur_A PAPS reductase; assimil 88.1 5.4 0.00018 28.2 10.5 89 3-108 45-159 (215)
42 3rg8_A Phosphoribosylaminoimid 87.6 4.9 0.00017 27.6 8.4 71 58-143 17-92 (159)
43 1k92_A Argininosuccinate synth 87.6 4.7 0.00016 32.5 9.5 36 2-41 10-45 (455)
44 1u11_A PURE (N5-carboxyaminoim 87.5 5.7 0.0002 27.9 9.1 71 58-143 36-110 (182)
45 2pg3_A Queuosine biosynthesis 87.3 6.3 0.00022 28.2 11.2 37 1-41 1-37 (232)
46 3da8_A Probable 5'-phosphoribo 86.2 7.6 0.00026 27.9 9.5 85 1-107 11-100 (215)
47 3kcq_A Phosphoribosylglycinami 86.0 7.8 0.00027 27.9 9.5 86 2-107 8-93 (215)
48 3ih5_A Electron transfer flavo 85.7 5.4 0.00019 28.7 8.3 86 2-106 3-101 (217)
49 2nz2_A Argininosuccinate synth 85.6 10 0.00034 30.1 10.4 87 2-107 5-122 (413)
50 3g40_A Na-K-CL cotransporter; 85.4 1 3.5E-05 34.2 4.3 105 15-145 178-282 (294)
51 1g63_A Epidermin modifying enz 85.4 0.9 3.1E-05 32.0 3.9 112 1-139 1-114 (181)
52 1ni5_A Putative cell cycle pro 85.0 6.5 0.00022 31.3 9.2 97 2-111 13-123 (433)
53 3g40_A Na-K-CL cotransporter; 85.0 11 0.00037 28.6 11.8 121 4-143 22-149 (294)
54 2oq2_A Phosphoadenosine phosph 84.4 6.7 0.00023 28.9 8.5 91 3-107 42-162 (261)
55 3bl5_A Queuosine biosynthesis 84.1 8.8 0.0003 26.9 10.8 89 3-108 4-125 (219)
56 3p9x_A Phosphoribosylglycinami 82.9 11 0.00037 27.1 10.2 86 2-107 2-92 (211)
57 2ywb_A GMP synthase [glutamine 82.9 15 0.00051 29.8 10.6 87 2-105 209-317 (503)
58 1o97_C Electron transferring f 82.3 7.3 0.00025 28.9 8.0 80 11-108 35-124 (264)
59 2c5s_A THII, probable thiamine 81.7 17 0.0006 28.6 10.8 35 2-40 187-221 (413)
60 1efp_B ETF, protein (electron 80.9 9.7 0.00033 28.0 8.1 78 12-108 36-125 (252)
61 1iv0_A Hypothetical protein; r 80.4 2.4 8.3E-05 26.6 4.1 55 85-142 40-95 (98)
62 1kor_A Argininosuccinate synth 80.2 10 0.00036 29.9 8.6 87 3-107 1-118 (400)
63 1efv_B Electron transfer flavo 80.2 12 0.00042 27.6 8.5 78 12-108 39-128 (255)
64 2hma_A Probable tRNA (5-methyl 79.9 18 0.00062 28.1 9.8 96 2-106 9-133 (376)
65 2wsi_A FAD synthetase; transfe 79.3 12 0.0004 28.3 8.3 93 3-108 54-169 (306)
66 3qjg_A Epidermin biosynthesis 78.8 3.1 0.00011 29.0 4.6 114 1-139 4-117 (175)
67 3tqi_A GMP synthase [glutamine 78.6 5.5 0.00019 32.6 6.7 89 3-106 231-340 (527)
68 2wq7_A RE11660P; lyase-DNA com 78.5 4.6 0.00016 33.2 6.2 97 6-105 32-133 (543)
69 2dpl_A GMP synthetase, GMP syn 77.2 15 0.00052 27.7 8.4 90 2-107 20-131 (308)
70 2ywr_A Phosphoribosylglycinami 75.7 19 0.00065 25.7 9.4 86 2-107 1-91 (216)
71 3tvs_A Cryptochrome-1; circadi 74.7 2.7 9.4E-05 34.6 3.9 92 10-104 13-107 (538)
72 1vl2_A Argininosuccinate synth 74.2 31 0.0011 27.4 10.4 37 1-41 13-49 (421)
73 1np7_A DNA photolyase; protein 73.1 4.2 0.00014 32.9 4.6 96 4-105 7-109 (489)
74 3nv7_A Phosphopantetheine aden 72.8 19 0.00066 24.4 8.0 93 1-110 1-96 (157)
75 2ejb_A Probable aromatic acid 72.1 6.3 0.00021 27.8 4.8 121 2-142 1-128 (189)
76 2o8v_A Phosphoadenosine phosph 70.6 28 0.00095 25.3 9.4 88 3-107 46-159 (252)
77 3nbm_A PTS system, lactose-spe 70.3 6.6 0.00023 25.0 4.2 66 58-142 22-88 (108)
78 1owl_A Photolyase, deoxyribodi 70.3 6 0.00021 32.0 4.9 126 1-140 1-129 (484)
79 3fy4_A 6-4 photolyase; DNA rep 69.5 5.6 0.00019 32.7 4.6 97 3-105 5-112 (537)
80 2q5c_A NTRC family transcripti 69.3 8.7 0.0003 27.0 5.1 65 56-141 14-79 (196)
81 3o1l_A Formyltetrahydrofolate 69.1 35 0.0012 25.8 9.8 84 2-107 105-192 (302)
82 2j07_A Deoxyribodipyrimidine p 68.9 4.7 0.00016 32.0 3.9 85 10-105 11-96 (420)
83 2j4d_A Cryptochrome 3, cryptoc 68.6 5.9 0.0002 32.4 4.5 96 4-105 41-144 (525)
84 1vbk_A Hypothetical protein PH 66.4 39 0.0013 25.4 8.5 84 2-106 179-265 (307)
85 3zqu_A Probable aromatic acid 65.8 9.8 0.00033 27.3 4.7 36 2-38 4-39 (209)
86 3u7q_B Nitrogenase molybdenum- 65.7 48 0.0016 27.0 9.4 85 2-106 364-448 (523)
87 1jq5_A Glycerol dehydrogenase; 65.7 14 0.00049 28.4 6.0 69 58-141 46-119 (370)
88 1nu0_A Hypothetical protein YQ 64.2 4.5 0.00015 27.0 2.5 54 85-143 42-99 (138)
89 1vhx_A Putative holliday junct 62.3 2.8 9.7E-05 28.4 1.3 53 84-142 43-100 (150)
90 2h31_A Multifunctional protein 62.0 44 0.0015 26.6 8.2 66 61-141 283-353 (425)
91 3k32_A Uncharacterized protein 61.7 38 0.0013 23.6 8.9 36 3-42 7-42 (203)
92 2der_A TRNA-specific 2-thiouri 61.5 55 0.0019 25.4 9.6 97 2-107 17-143 (380)
93 4ds3_A Phosphoribosylglycinami 61.2 41 0.0014 23.9 9.5 85 3-107 8-97 (209)
94 2e0i_A 432AA long hypothetical 60.6 7.6 0.00026 31.0 3.7 116 10-140 10-126 (440)
95 3n0v_A Formyltetrahydrofolate 59.2 53 0.0018 24.5 10.4 84 2-107 90-177 (286)
96 2pju_A Propionate catabolism o 58.5 25 0.00085 25.4 5.8 67 56-141 22-91 (225)
97 1gpm_A GMP synthetase, XMP ami 57.8 64 0.0022 26.2 8.8 89 2-105 227-337 (525)
98 3lou_A Formyltetrahydrofolate 57.7 57 0.002 24.4 9.5 84 2-107 95-182 (292)
99 3auf_A Glycinamide ribonucleot 56.2 53 0.0018 23.6 10.3 86 2-107 22-112 (229)
100 3obi_A Formyltetrahydrofolate 55.7 41 0.0014 25.2 6.8 85 2-107 89-177 (288)
101 3av3_A Phosphoribosylglycinami 54.9 54 0.0018 23.2 10.2 86 2-107 3-93 (212)
102 1qgu_B Protein (nitrogenase mo 54.1 87 0.003 25.4 10.0 85 2-106 360-444 (519)
103 2l2q_A PTS system, cellobiose- 53.7 38 0.0013 21.1 5.7 66 57-140 19-84 (109)
104 3exr_A RMPD (hexulose-6-phosph 53.3 24 0.00083 25.2 5.1 86 2-104 5-90 (221)
105 3o1i_D Periplasmic protein TOR 53.0 58 0.002 23.3 7.3 72 55-140 20-95 (304)
106 3eb2_A Putative dihydrodipicol 52.8 69 0.0024 23.9 8.0 81 57-143 58-141 (300)
107 1meo_A Phosophoribosylglycinam 52.7 58 0.002 23.0 10.4 84 3-106 1-89 (209)
108 1mio_B Nitrogenase molybdenum 52.6 85 0.0029 24.9 11.0 98 2-138 312-409 (458)
109 1sbz_A Probable aromatic acid 52.1 26 0.0009 24.7 5.0 35 3-37 1-35 (197)
110 3tqr_A Phosphoribosylglycinami 51.6 63 0.0021 23.0 10.3 85 2-107 5-94 (215)
111 1qzu_A Hypothetical protein MD 51.6 17 0.00059 25.9 3.9 36 2-37 19-54 (206)
112 3d0c_A Dihydrodipicolinate syn 51.3 61 0.0021 24.4 7.3 73 60-139 69-144 (314)
113 3p0r_A Azoreductase; structura 50.6 12 0.0004 26.5 3.0 40 1-41 3-50 (211)
114 3nrb_A Formyltetrahydrofolate 50.5 56 0.0019 24.4 6.8 85 2-107 88-176 (287)
115 3qw3_A Orotidine-5-phosphate d 50.3 23 0.0008 26.0 4.6 95 3-105 14-113 (255)
116 2l69_A Rossmann 2X3 fold prote 50.2 20 0.00069 22.3 3.6 49 56-106 12-60 (134)
117 1u3d_A Cryptochrome 1 apoprote 49.0 46 0.0016 26.9 6.6 116 10-140 21-138 (509)
118 1dnp_A DNA photolyase; DNA rep 48.3 6.8 0.00023 31.6 1.5 92 10-105 10-104 (471)
119 3fni_A Putative diflavin flavo 48.0 51 0.0017 21.9 5.8 50 55-108 18-68 (159)
120 3vzx_A Heptaprenylglyceryl pho 47.6 38 0.0013 24.5 5.3 66 87-160 22-93 (228)
121 3vk5_A MOEO5; TIM barrel, tran 47.5 14 0.00048 27.8 3.0 68 88-161 58-135 (286)
122 2f6u_A GGGPS, (S)-3-O-geranylg 47.2 20 0.00069 26.1 3.8 67 78-152 11-85 (234)
123 1p3y_1 MRSD protein; flavoprot 46.7 23 0.00079 24.9 4.0 115 2-140 8-123 (194)
124 2ehh_A DHDPS, dihydrodipicolin 44.7 75 0.0026 23.6 6.8 51 87-143 86-137 (294)
125 2r8w_A AGR_C_1641P; APC7498, d 44.7 81 0.0028 24.0 7.0 78 60-143 91-171 (332)
126 3hly_A Flavodoxin-like domain; 44.0 56 0.0019 21.6 5.5 50 55-108 14-63 (161)
127 1ta9_A Glycerol dehydrogenase; 44.0 35 0.0012 27.2 5.1 58 71-142 117-179 (450)
128 1qv9_A F420-dependent methylen 43.8 32 0.0011 25.4 4.3 44 89-141 57-100 (283)
129 3nd5_A Phosphopantetheine aden 43.7 75 0.0026 21.7 10.4 94 1-110 1-97 (171)
130 3cpr_A Dihydrodipicolinate syn 43.6 80 0.0027 23.6 6.8 52 86-143 101-153 (304)
131 3jyf_A 2',3'-cyclic nucleotide 43.3 1.1E+02 0.0037 23.3 8.4 94 31-138 7-125 (339)
132 1xky_A Dihydrodipicolinate syn 43.0 77 0.0027 23.6 6.6 51 86-142 97-148 (301)
133 3a5f_A Dihydrodipicolinate syn 42.7 76 0.0026 23.5 6.5 52 86-143 86-138 (291)
134 1f76_A Dihydroorotate dehydrog 42.6 1E+02 0.0036 23.1 7.4 90 16-106 152-248 (336)
135 2yxg_A DHDPS, dihydrodipicolin 41.8 77 0.0026 23.4 6.4 51 87-143 86-137 (289)
136 2a0u_A Initiation factor 2B; S 41.8 1.2E+02 0.0042 23.6 8.5 45 91-140 251-298 (383)
137 2vc6_A MOSA, dihydrodipicolina 41.7 73 0.0025 23.6 6.3 77 60-142 57-136 (292)
138 1t9k_A Probable methylthioribo 41.7 1.1E+02 0.0039 23.4 7.5 46 90-140 221-269 (347)
139 3l21_A DHDPS, dihydrodipicolin 41.3 74 0.0025 23.8 6.3 81 57-143 69-152 (304)
140 1t5o_A EIF2BD, translation ini 41.0 92 0.0031 24.0 6.8 45 91-140 220-266 (351)
141 3flu_A DHDPS, dihydrodipicolin 40.2 92 0.0032 23.1 6.7 81 57-143 61-144 (297)
142 1o5k_A DHDPS, dihydrodipicolin 39.7 78 0.0027 23.7 6.2 52 86-143 97-149 (306)
143 3ce9_A Glycerol dehydrogenase; 39.7 1.2E+02 0.004 23.0 7.3 69 58-142 49-122 (354)
144 3qi7_A Putative transcriptiona 39.6 61 0.0021 25.3 5.6 91 4-105 14-120 (371)
145 1mvl_A PPC decarboxylase athal 39.5 41 0.0014 24.0 4.3 34 2-37 19-52 (209)
146 3na8_A Putative dihydrodipicol 39.5 82 0.0028 23.7 6.3 81 57-143 78-161 (315)
147 3qze_A DHDPS, dihydrodipicolin 39.3 94 0.0032 23.4 6.6 80 58-143 78-160 (314)
148 2ojp_A DHDPS, dihydrodipicolin 39.2 71 0.0024 23.7 5.9 49 88-142 88-137 (292)
149 2v9d_A YAGE; dihydrodipicolini 39.2 79 0.0027 24.2 6.2 51 87-143 117-168 (343)
150 2p0y_A Hypothetical protein LP 39.2 24 0.00083 27.2 3.3 50 84-141 178-229 (341)
151 2rfg_A Dihydrodipicolinate syn 38.5 76 0.0026 23.6 6.0 51 87-143 86-137 (297)
152 3m5v_A DHDPS, dihydrodipicolin 38.4 1E+02 0.0036 22.9 6.7 53 85-143 92-145 (301)
153 3rfo_A Methionyl-tRNA formyltr 38.3 57 0.0019 24.7 5.2 42 61-107 51-93 (317)
154 3vmk_A 3-isopropylmalate dehyd 38.3 54 0.0019 25.6 5.2 77 14-104 180-256 (375)
155 3m9w_A D-xylose-binding peripl 38.0 1.1E+02 0.0038 22.0 10.5 76 55-143 17-94 (313)
156 2yvk_A Methylthioribose-1-phos 38.0 1.1E+02 0.0037 23.9 6.9 45 91-140 247-294 (374)
157 1jx7_A Hypothetical protein YC 37.7 51 0.0018 20.2 4.3 37 3-39 2-43 (117)
158 3tak_A DHDPS, dihydrodipicolin 37.7 94 0.0032 23.0 6.4 81 57-143 55-138 (291)
159 1f6k_A N-acetylneuraminate lya 37.6 73 0.0025 23.6 5.7 52 86-143 89-141 (293)
160 1w2w_B 5-methylthioribose-1-ph 37.6 70 0.0024 22.4 5.3 66 62-140 23-93 (191)
161 3lqk_A Dipicolinate synthase s 37.5 31 0.001 24.4 3.4 126 2-145 7-136 (201)
162 1v6t_A Hypothetical UPF0271 pr 37.4 78 0.0027 23.4 5.6 118 15-152 41-179 (255)
163 1e2b_A Enzyme IIB-cellobiose; 37.3 56 0.0019 20.3 4.3 44 57-107 18-61 (106)
164 2q7x_A UPF0052 protein SP_1565 37.3 30 0.001 26.5 3.5 49 85-141 175-225 (326)
165 2hy5_B Intracellular sulfur ox 37.2 73 0.0025 20.8 5.1 36 2-38 5-44 (136)
166 3qw4_B UMP synthase; N-termina 37.0 50 0.0017 26.4 4.9 95 3-105 15-114 (453)
167 3t8y_A CHEB, chemotaxis respon 36.8 84 0.0029 20.3 8.1 74 56-142 35-108 (164)
168 2o2z_A Hypothetical protein; s 36.8 54 0.0018 25.1 4.9 50 84-141 168-219 (323)
169 1viz_A PCRB protein homolog; s 36.6 36 0.0012 24.8 3.7 69 78-154 11-87 (240)
170 3gve_A YFKN protein; alpha-bet 36.6 1.4E+02 0.0047 22.7 8.2 94 31-138 10-132 (341)
171 4f3r_A Phosphopantetheine aden 36.2 98 0.0033 20.8 10.0 93 1-111 4-99 (162)
172 2wkj_A N-acetylneuraminate lya 35.6 83 0.0028 23.5 5.8 50 87-142 97-148 (303)
173 3si9_A DHDPS, dihydrodipicolin 35.5 1E+02 0.0035 23.2 6.3 81 57-143 76-159 (315)
174 3f6p_A Transcriptional regulat 35.5 73 0.0025 19.1 8.7 70 57-141 13-82 (120)
175 2ohh_A Type A flavoprotein FPR 35.1 1.5E+02 0.005 22.5 9.2 49 55-107 270-318 (404)
176 3uow_A GMP synthetase; structu 34.7 1.9E+02 0.0064 23.7 9.7 90 2-105 255-369 (556)
177 3l6u_A ABC-type sugar transpor 34.7 1.2E+02 0.0041 21.4 9.1 76 55-143 23-100 (293)
178 3rot_A ABC sugar transporter, 34.4 1.3E+02 0.0043 21.6 7.2 76 55-143 18-97 (297)
179 3daq_A DHDPS, dihydrodipicolin 34.4 84 0.0029 23.3 5.6 79 59-143 58-139 (292)
180 3l49_A ABC sugar (ribose) tran 34.1 1.2E+02 0.0042 21.4 8.4 75 56-143 21-97 (291)
181 3uug_A Multiple sugar-binding 33.9 1.3E+02 0.0046 21.7 8.5 76 55-143 18-95 (330)
182 3udu_A 3-isopropylmalate dehyd 33.9 64 0.0022 25.1 4.9 77 14-104 168-244 (361)
183 3jy6_A Transcriptional regulat 33.4 1.3E+02 0.0043 21.2 8.5 73 55-143 22-96 (276)
184 4h1s_A 5'-nucleotidase; hydrol 33.3 1.4E+02 0.0049 23.9 7.2 94 32-138 3-117 (530)
185 3gv0_A Transcriptional regulat 33.0 1.3E+02 0.0045 21.3 8.6 74 55-143 25-100 (288)
186 2ppv_A Uncharacterized protein 32.9 47 0.0016 25.5 4.0 50 84-141 167-218 (332)
187 2vzf_A NADH-dependent FMN redu 32.9 57 0.0019 22.3 4.2 39 1-40 1-44 (197)
188 3r8w_A 3-isopropylmalate dehyd 32.9 80 0.0028 25.0 5.4 77 14-104 208-284 (405)
189 3u1h_A 3-isopropylmalate dehyd 32.7 75 0.0026 25.0 5.2 77 14-104 187-263 (390)
190 3mcu_A Dipicolinate synthase, 32.7 39 0.0014 24.0 3.3 125 2-145 5-134 (207)
191 3w01_A Heptaprenylglyceryl pho 32.1 59 0.002 23.6 4.2 66 87-160 27-98 (235)
192 1vlc_A 3-isopropylmalate dehyd 32.0 79 0.0027 24.6 5.2 77 14-104 175-251 (366)
193 3m47_A Orotidine 5'-phosphate 31.9 80 0.0027 22.5 5.0 32 3-39 13-44 (228)
194 3klo_A Transcriptional regulat 31.8 91 0.0031 21.4 5.2 73 57-141 18-92 (225)
195 3b4u_A Dihydrodipicolinate syn 31.7 1.1E+02 0.0038 22.7 5.9 80 57-142 57-143 (294)
196 1cnz_A IPMDH, IMDH, protein (3 31.3 82 0.0028 24.5 5.2 77 14-104 171-247 (363)
197 1x92_A APC5045, phosphoheptose 31.1 45 0.0015 22.8 3.4 36 3-39 114-149 (199)
198 3nbk_A Phosphopantetheine aden 31.0 1.3E+02 0.0045 20.7 10.3 95 1-112 20-117 (177)
199 1ccw_A Protein (glutamate muta 30.6 1.1E+02 0.0038 19.7 5.4 45 61-108 22-66 (137)
200 2qv7_A Diacylglycerol kinase D 30.4 1.3E+02 0.0045 22.5 6.2 45 57-103 42-87 (337)
201 1jkx_A GART;, phosphoribosylgl 30.3 1.4E+02 0.0049 21.0 10.9 85 3-107 1-90 (212)
202 1a05_A IPMDH, IMDH, 3-isopropy 30.2 95 0.0033 24.0 5.3 77 14-104 166-242 (358)
203 3egc_A Putative ribose operon 30.1 1.5E+02 0.005 21.0 9.5 74 55-143 23-98 (291)
204 2y3z_A 3-isopropylmalate dehyd 30.1 90 0.0031 24.2 5.2 77 14-104 164-240 (359)
205 3j21_Z 50S ribosomal protein L 30.0 96 0.0033 18.8 4.5 19 87-105 22-40 (99)
206 3e96_A Dihydrodipicolinate syn 29.8 1.4E+02 0.0049 22.3 6.3 77 57-140 66-145 (316)
207 1q6o_A Humps, 3-keto-L-gulonat 29.7 91 0.0031 21.7 4.9 85 3-104 4-88 (216)
208 1w0d_A 3-isopropylmalate dehyd 29.1 1.2E+02 0.0041 23.2 5.7 78 14-104 155-232 (337)
209 3kht_A Response regulator; PSI 29.0 1.1E+02 0.0036 19.0 8.2 73 56-141 15-90 (144)
210 3r7f_A Aspartate carbamoyltran 28.8 72 0.0025 24.1 4.4 40 85-138 78-120 (304)
211 3qfk_A Uncharacterized protein 28.8 2.3E+02 0.0077 22.8 8.3 75 29-107 16-112 (527)
212 3flk_A Tartrate dehydrogenase/ 28.6 1.4E+02 0.0048 23.2 6.0 79 13-104 166-245 (364)
213 2amj_A Modulator of drug activ 28.0 97 0.0033 21.4 4.8 48 55-106 32-80 (204)
214 3gxq_A Putative regulator of t 27.9 71 0.0024 16.7 3.0 26 74-99 11-37 (54)
215 3s40_A Diacylglycerol kinase; 27.9 1.8E+02 0.006 21.4 6.5 72 56-141 25-98 (304)
216 3d6n_B Aspartate carbamoyltran 27.8 1E+02 0.0035 23.1 5.0 39 85-137 76-118 (291)
217 3cnb_A DNA-binding response re 27.7 1.1E+02 0.0037 18.7 6.9 48 85-141 43-93 (143)
218 2i2x_B MTAC, methyltransferase 27.6 1.7E+02 0.0059 21.1 8.4 44 62-108 143-186 (258)
219 1y80_A Predicted cobalamin bin 27.6 48 0.0016 23.1 3.1 26 82-107 125-150 (210)
220 1mio_A Nitrogenase molybdenum 27.5 2.5E+02 0.0085 22.8 8.7 42 77-136 437-478 (533)
221 3a11_A Translation initiation 27.4 2.1E+02 0.0071 21.9 7.2 41 95-140 208-251 (338)
222 1d4a_A DT-diaphorase, quinone 27.3 63 0.0022 23.6 3.8 39 2-41 2-44 (273)
223 3e61_A Putative transcriptiona 27.3 1.6E+02 0.0055 20.6 6.7 72 55-143 23-97 (277)
224 1hp1_A 5'-nucleotidase; metall 27.3 2.4E+02 0.0081 22.5 8.2 76 31-107 7-94 (516)
225 3inp_A D-ribulose-phosphate 3- 27.2 85 0.0029 22.9 4.4 48 56-104 176-224 (246)
226 1p0k_A Isopentenyl-diphosphate 27.1 2E+02 0.0069 21.6 10.8 80 58-139 166-258 (349)
227 3k9w_A Phosphopantetheine aden 27.1 1.6E+02 0.0054 20.4 10.8 94 1-111 21-117 (187)
228 3p52_A NH(3)-dependent NAD(+) 26.8 1.8E+02 0.0061 20.9 6.8 36 1-39 25-60 (249)
229 3o74_A Fructose transport syst 26.5 1.6E+02 0.0056 20.4 10.1 75 55-143 17-93 (272)
230 1dd9_A DNA primase, DNAG; topr 26.4 1.1E+02 0.0036 23.5 5.0 35 3-37 207-244 (338)
231 3q0i_A Methionyl-tRNA formyltr 26.4 2E+02 0.0068 21.7 6.5 42 61-107 54-96 (318)
232 2is8_A Molybdopterin biosynthe 26.3 1.4E+02 0.0047 19.9 5.1 42 60-103 24-69 (164)
233 1xrs_A D-lysine 5,6-aminomutas 26.2 79 0.0027 25.5 4.2 47 73-119 151-200 (516)
234 2fyw_A Conserved hypothetical 26.1 60 0.002 23.8 3.5 29 74-102 37-65 (267)
235 3sm9_A Mglur3, metabotropic gl 25.9 2.4E+02 0.0082 22.1 9.8 93 3-107 186-278 (479)
236 3ouz_A Biotin carboxylase; str 25.7 2.1E+02 0.0071 22.2 6.8 34 1-39 5-38 (446)
237 2zay_A Response regulator rece 25.6 1.2E+02 0.0042 18.7 6.8 48 85-141 41-91 (147)
238 3hcw_A Maltose operon transcri 25.6 1.8E+02 0.0063 20.7 7.4 73 56-143 28-102 (295)
239 3eod_A Protein HNR; response r 25.4 1.2E+02 0.004 18.3 6.7 71 56-141 17-88 (130)
240 3fkr_A L-2-keto-3-deoxyarabona 25.3 2.1E+02 0.0072 21.3 6.7 77 59-141 64-146 (309)
241 4edg_A DNA primase; catalytic 25.2 54 0.0018 25.1 3.1 34 3-36 196-229 (329)
242 2au3_A DNA primase; zinc ribbo 25.0 78 0.0027 24.7 4.1 34 3-36 288-321 (407)
243 4hg1_A Putative cytoplasmic pr 24.9 54 0.0018 22.9 2.7 29 132-160 133-161 (225)
244 3iwt_A 178AA long hypothetical 24.9 1.6E+02 0.0055 19.7 6.4 45 58-104 41-89 (178)
245 1efv_A Electron transfer flavo 24.9 2.2E+02 0.0076 21.4 10.7 83 1-106 1-96 (315)
246 2e4u_A Metabotropic glutamate 24.9 2.7E+02 0.0091 22.3 10.0 23 85-107 257-279 (555)
247 3k4h_A Putative transcriptiona 24.8 1.8E+02 0.0063 20.4 7.6 75 54-143 27-103 (292)
248 3dbi_A Sugar-binding transcrip 24.7 2E+02 0.007 20.9 8.7 75 55-143 78-154 (338)
249 2dfa_A Hypothetical UPF0271 pr 24.6 76 0.0026 23.3 3.7 104 15-138 41-163 (250)
250 1xw8_A UPF0271 protein YBGL; N 24.6 1.2E+02 0.0042 22.2 4.8 62 60-138 87-158 (252)
251 2yva_A DNAA initiator-associat 24.6 70 0.0024 21.7 3.4 36 3-39 110-145 (196)
252 3ecs_A Translation initiation 24.3 2.3E+02 0.0079 21.4 9.0 41 96-141 189-232 (315)
253 4dz1_A DALS D-alanine transpor 23.9 1.8E+02 0.0062 20.1 7.7 40 60-104 57-96 (259)
254 3kyj_B CHEY6 protein, putative 23.9 1.3E+02 0.0046 18.5 7.7 73 55-140 22-95 (145)
255 2kll_A Interleukin-33; beta-tr 23.7 34 0.0012 22.6 1.5 17 146-162 71-87 (161)
256 1zgh_A Methionyl-tRNA formyltr 23.6 1.7E+02 0.0056 21.5 5.4 25 83-107 64-88 (260)
257 3h5d_A DHDPS, dihydrodipicolin 23.5 2.3E+02 0.0079 21.1 6.5 82 56-143 60-145 (311)
258 1tjy_A Sugar transport protein 23.4 2.1E+02 0.0073 20.6 6.8 73 56-141 19-94 (316)
259 3hs3_A Ribose operon repressor 23.2 2E+02 0.0068 20.2 7.7 67 55-141 25-94 (277)
260 3h75_A Periplasmic sugar-bindi 23.2 2.2E+02 0.0076 20.8 8.3 75 55-143 19-97 (350)
261 1y5e_A Molybdenum cofactor bio 23.1 1.7E+02 0.0059 19.5 6.1 46 56-103 30-79 (169)
262 3b6i_A Flavoprotein WRBA; flav 22.8 1.4E+02 0.0047 20.0 4.7 39 1-40 1-41 (198)
263 2d1c_A Isocitrate dehydrogenas 22.8 2.1E+02 0.0071 23.3 6.2 79 13-104 165-244 (496)
264 1nmo_A Hypothetical protein YB 22.8 74 0.0025 23.1 3.4 29 75-103 35-63 (247)
265 2xdq_A Light-independent proto 22.7 33 0.0011 27.2 1.6 51 55-107 82-139 (460)
266 3vkj_A Isopentenyl-diphosphate 22.6 84 0.0029 24.3 3.8 50 57-108 174-223 (368)
267 3blx_A Isocitrate dehydrogenas 22.6 2.7E+02 0.0091 21.5 6.9 79 13-104 157-237 (349)
268 3h5l_A Putative branched-chain 22.4 2.5E+02 0.0086 21.1 8.3 20 85-104 208-227 (419)
269 2yxb_A Coenzyme B12-dependent 22.3 71 0.0024 21.4 3.0 45 60-108 36-81 (161)
270 3tfx_A Orotidine 5'-phosphate 22.2 2.2E+02 0.0074 20.8 5.8 24 1-25 3-26 (259)
271 3qvl_A Putative hydantoin race 22.1 75 0.0026 22.9 3.3 19 93-111 171-189 (245)
272 3u7r_A NADPH-dependent FMN red 21.9 97 0.0033 21.4 3.7 38 1-39 1-41 (190)
273 1qkk_A DCTD, C4-dicarboxylate 21.9 1.5E+02 0.0053 18.5 5.1 70 57-141 14-84 (155)
274 1m3s_A Hypothetical protein YC 21.6 88 0.003 20.9 3.4 36 3-39 80-115 (186)
275 1ypf_A GMP reductase; GUAC, pu 21.5 1.2E+02 0.0041 22.9 4.5 78 56-138 134-216 (336)
276 3fvw_A Putative NAD(P)H-depend 21.4 1.1E+02 0.0036 20.9 3.9 38 1-40 1-42 (192)
277 3i42_A Response regulator rece 21.0 1.4E+02 0.0049 17.7 9.2 73 56-143 13-88 (127)
278 2yyb_A Hypothetical protein TT 20.8 57 0.0019 23.6 2.4 26 77-102 38-63 (242)
279 3gt7_A Sensor protein; structu 20.6 1.7E+02 0.0057 18.4 9.2 71 56-141 17-90 (154)
280 3clh_A 3-dehydroquinate syntha 20.6 2E+02 0.007 21.7 5.6 44 85-141 71-120 (343)
281 1xng_A NH(3)-dependent NAD(+) 20.5 2.1E+02 0.0072 20.6 5.5 35 2-39 25-59 (268)
282 3sr7_A Isopentenyl-diphosphate 20.4 1.3E+02 0.0044 23.3 4.5 52 56-110 192-244 (365)
283 3ctl_A D-allulose-6-phosphate 20.4 2.4E+02 0.0082 20.1 6.0 42 61-105 156-198 (231)
284 3q9s_A DNA-binding response re 20.3 2.3E+02 0.0078 19.8 7.6 71 56-141 47-117 (249)
285 2r48_A Phosphotransferase syst 20.3 90 0.0031 19.7 2.9 44 60-107 23-68 (106)
286 3ty4_A Probable homoisocitrate 20.2 2.1E+02 0.0072 22.2 5.6 78 14-104 163-256 (366)
287 2vk2_A YTFQ, ABC transporter p 20.1 2.4E+02 0.0083 20.1 7.6 73 56-141 18-92 (306)
288 2jba_A Phosphate regulon trans 20.0 1.5E+02 0.0051 17.6 5.3 70 57-141 13-85 (127)
No 1
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.96 E-value=6.3e-28 Score=170.22 Aligned_cols=134 Identities=15% Similarity=0.227 Sum_probs=106.4
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCC-----C--CCCCCC----Cc------------cccchH
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPP-----K--PNTSHH----DS------------SACCPY 57 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~-----~--~~~~~~----~~------------~~~~~~ 57 (162)
|+++||||+|+|+.+..|++||+.+|+..+++|+++||+++. . ...... +. .+..++
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999753 1 111000 11 011122
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEE
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVG 137 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlv 137 (162)
.++.+.+.+.. .++++++.+..|++.+.|++++++.++|+||||++|++.+.++++||++ ++|+++++|||++
T Consensus 84 ~l~~~~~~~~~--~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~-----~~vl~~~~~pVlv 156 (162)
T 1mjh_A 84 KMENIKKELED--VGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVT-----ENVIKKSNKPVLV 156 (162)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHH-----HHHHHHCCSCEEE
T ss_pred HHHHHHHHHHH--cCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchH-----HHHHHhCCCCEEE
Confidence 22222333333 6788888888999999999999999999999999999999999999999 9999999999999
Q ss_pred EecC
Q 031262 138 VRKQ 141 (162)
Q Consensus 138 v~~~ 141 (162)
||+.
T Consensus 157 v~~~ 160 (162)
T 1mjh_A 157 VKRK 160 (162)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 9864
No 2
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.95 E-value=1.7e-28 Score=170.18 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=108.0
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCC--Cc----cccchHHHHHHHHhHHHhC-CCC
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHH--DS----SACCPYLANSLGSLCKACK-PEV 73 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~-~~v 73 (162)
|+++||||+|+|+.+..|++||+.+|+..+++|+++||++......... .. ++..++..+.++++.+... .++
T Consensus 4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 83 (146)
T 3s3t_A 4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSA 83 (146)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999998999999999997654321110 00 1111222233333333332 577
Q ss_pred -eEEEEEEecCchhHHHH-HHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 74 -EVEALVIQGPKLGTVMS-QVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 74 -~~~~~v~~g~~~~~I~~-~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
++++.+..|++.+.|++ ++++.++||||||+++++.+.+.++||++ ++++++++||||+||
T Consensus 84 ~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~-----~~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 84 PNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTT-----SYVVDHAPCNVIVIR 146 (146)
T ss_dssp CCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHH-----HHHHHHCSSEEEEEC
T ss_pred cceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchH-----HHHhccCCCCEEEeC
Confidence 88888999999999999 99999999999999999999999999999 999999999999986
No 3
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.95 E-value=2.4e-28 Score=169.47 Aligned_cols=131 Identities=20% Similarity=0.196 Sum_probs=106.9
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCC---C---CCCC----c---cccchHHHHHHHHhHH
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPN---T---SHHD----S---SACCPYLANSLGSLCK 67 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~---~---~~~~----~---~~~~~~~~~~~~~~~~ 67 (162)
|+++||||+|+|+.|..|++||+.+|+..+++|+++||++..... . +... . .+..++..+.+.+.+.
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRAT 80 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999899999999999754310 0 0000 1 1222333344444444
Q ss_pred HhCCCCeE---EEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEE
Q 031262 68 ACKPEVEV---EALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGV 138 (162)
Q Consensus 68 ~~~~~v~~---~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv 138 (162)
. .++++ +..+..|++.+.|+++++++++||||||+++++.+.+.++||++ ++++++++||||+|
T Consensus 81 ~--~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~-----~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 81 E--LGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVA-----QRVAGSAHCPVLVV 147 (147)
T ss_dssp H--TTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHH-----HHHHHHCSSCEEEC
T ss_pred h--cCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHH-----HHHHhhCCCCEEEC
Confidence 4 56666 88889999999999999999999999999999999999999999 99999999999986
No 4
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.95 E-value=4.6e-28 Score=166.64 Aligned_cols=132 Identities=20% Similarity=0.276 Sum_probs=105.1
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCC-CCCCCC---ccccchHHHHHHHHhHHHhCCCC-eE
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKP-NTSHHD---SSACCPYLANSLGSLCKACKPEV-EV 75 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v-~~ 75 (162)
|+++||||+|+|+.+..|++||..+|+..+++++++||.++... .....+ .++..++..+.++++++. .++ ++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~ 78 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARAL--TGVPKE 78 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHH--HCCCGG
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHH--cCCCcc
Confidence 89999999999999999999999999988999999999974321 110001 111123333444555444 466 66
Q ss_pred EEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 76 EALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 76 ~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
++.+..|++.+.|++++++.++|+||||+++++.+.+.++||++ ++++++++|||+++|
T Consensus 79 ~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~-----~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 79 DALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQS-----QRVVAEAPCPVLLVR 137 (137)
T ss_dssp GEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHH-----HHHHHHCSSCEEEEC
T ss_pred EEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHH-----HHHHhcCCCCEEEeC
Confidence 77788999999999999999999999999999999999999999 999999999999986
No 5
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.95 E-value=2.9e-27 Score=167.89 Aligned_cols=134 Identities=15% Similarity=0.112 Sum_probs=105.7
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEE--EEeCCCCC-C-CCC---C---CccccchHHHHHHHHhHHHhC
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLL--HVVPPPKP-N-TSH---H---DSSACCPYLANSLGSLCKACK 70 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~--hv~~~~~~-~-~~~---~---~~~~~~~~~~~~~~~~~~~~~ 70 (162)
|+++||||+|+|+.|..|++||+.+|+ .+++|+++ ||.+.... . ... . ...+..++.++.+.+.+..
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 92 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHN-- 92 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHT--
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 578999999999999999999999999 99999999 87754322 1 000 0 1122334444444444444
Q ss_pred CCCe-EEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 71 PEVE-VEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 71 ~~v~-~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
.+++ +++.+..|++.+.|+++|++.++||||||+++++.+.++++||++ ++|+++++|||++|+++.
T Consensus 93 ~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva-----~~vl~~a~~PVlvV~~~~ 160 (163)
T 1tq8_A 93 AGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVP-----ANVSRRAKVDVLIVHTTE 160 (163)
T ss_dssp TTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHH-----HHHHHHTTCEEEEECCC-
T ss_pred cCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHH-----HHHHHhCCCCEEEEeCCC
Confidence 5787 888888999999999999999999999999999999999999999 999999999999998653
No 6
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.95 E-value=1.2e-27 Score=166.77 Aligned_cols=133 Identities=14% Similarity=0.248 Sum_probs=99.2
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCC----CCCCC------CccccchHHHHHHHHhHHHhC
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKP----NTSHH------DSSACCPYLANSLGSLCKACK 70 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~----~~~~~------~~~~~~~~~~~~~~~~~~~~~ 70 (162)
|+++||||+|+|+.|..|++||+.+|+..+++|+++||+++... +.... ..++..++..+.++++++++
T Consensus 5 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 83 (150)
T 3tnj_A 5 VYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTL- 83 (150)
T ss_dssp CCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHH-
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 57999999999999999999999999999999999999976432 11111 11222344445566666664
Q ss_pred CCCe-EEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 71 PEVE-VEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 71 ~~v~-~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
++. ++..+..|++.+.|+++++++++|+||||+++++.+. .++||++ ++++++++||||+||++
T Consensus 84 -~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~-----~~vl~~~~~pVlvv~~~ 148 (150)
T 3tnj_A 84 -GIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTA-----NSVLHYAKCDVLAVRLR 148 (150)
T ss_dssp -TCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHH-----HHHHHHCSSEEEEEECC
T ss_pred -CCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchH-----HHHHHhCCCCEEEEeCC
Confidence 444 4677888999999999999999999999999999999 9999999 99999999999999875
No 7
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.95 E-value=2.9e-27 Score=168.14 Aligned_cols=136 Identities=12% Similarity=0.095 Sum_probs=105.5
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCC-CCC--C---------CCc------cccchHHHHHH
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKP-NTS--H---------HDS------SACCPYLANSL 62 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~-~~~--~---------~~~------~~~~~~~~~~~ 62 (162)
|+++||||+|+|+.+..|++||+.+|+..+++|+++||+++... +.. . ... .+..++.++.+
T Consensus 4 m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (170)
T 2dum_A 4 MFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK 83 (170)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999865321 110 0 000 01112222233
Q ss_pred HHhHHHhCCCCeEEE--EEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 63 GSLCKACKPEVEVEA--LVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 63 ~~~~~~~~~~v~~~~--~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
.+.+.. .++++++ .+..|++.+.|+++++++++||||||+++++.+.+.++||++ ++|+++++||||+|++
T Consensus 84 ~~~~~~--~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~-----~~vl~~~~~PVlvv~~ 156 (170)
T 2dum_A 84 AEEVKR--AFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTV-----MRVLRKTKKPVLIIKE 156 (170)
T ss_dssp HHHHHH--HTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHH-----HHHHHHCSSCEEEECC
T ss_pred HHHHHH--cCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHH-----HHHHHhCCCCEEEEcc
Confidence 333333 4677776 888999999999999999999999999999999999999999 9999999999999997
Q ss_pred CCC
Q 031262 141 QSK 143 (162)
Q Consensus 141 ~~~ 143 (162)
...
T Consensus 157 ~~~ 159 (170)
T 2dum_A 157 VDE 159 (170)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 8
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.95 E-value=1e-27 Score=168.84 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=104.7
Q ss_pred CCcEEEEEeCC-ChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEE--E
Q 031262 1 MRKRVMVVVDQ-TSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVE--A 77 (162)
Q Consensus 1 m~~~Ilv~vD~-S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~ 77 (162)
|+++||||+|+ |+.+..|++||+.+|+..+++|+++||.+...... ....+..++.++.+.+.+.. .+++++ .
T Consensus 23 m~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~--~~~~~~~~~~l~~~~~~~~~--~g~~~~~~~ 98 (155)
T 3dlo_A 23 IYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTK--DEDIIEAKETLSWAVSIIRK--EGAEGEEHL 98 (155)
T ss_dssp CCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSC--HHHHHHHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred ccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCccc--HHHHHHHHHHHHHHHHHHHh--cCCCceEEE
Confidence 68999999999 99999999999999998899999999997543210 11112233333444444444 345554 4
Q ss_pred EEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 78 LVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 78 ~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
.+..|++.+.|++++++.++||||||+++++.+.++++||++ ++++++++||||+||
T Consensus 99 ~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~-----~~vl~~a~~PVLvVr 155 (155)
T 3dlo_A 99 LVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVA-----RDVILKANKPVICIK 155 (155)
T ss_dssp EESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHH-----HHHHHHCSSCEEEEC
T ss_pred EecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHH-----HHHHHhCCCCEEEeC
Confidence 566799999999999999999999999999999999999999 999999999999986
No 9
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.94 E-value=4.7e-27 Score=161.55 Aligned_cols=128 Identities=18% Similarity=0.293 Sum_probs=103.8
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhc-cCCCCEEEEEEEeCCCCCCCCCC--C---cc----ccchHHHHHHHHhHHHhCC
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHV-TNKGDLLTLLHVVPPPKPNTSHH--D---SS----ACCPYLANSLGSLCKACKP 71 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a-~~~~~~l~l~hv~~~~~~~~~~~--~---~~----~~~~~~~~~~~~~~~~~~~ 71 (162)
|++||||+|+|+.+..|++||+.++ +..+++|+++||.++........ + .+ +..++.++.+.+.+.. .
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 78 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTE--K 78 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH--C
Confidence 6899999999999999999999999 89999999999997754321100 0 00 1222233333333333 6
Q ss_pred CCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 72 EVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 72 ~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
++++++.+..|++.+.|+++++ ++||||||+++++.+.+++ ||++ ++++++++||||+||
T Consensus 79 g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~-----~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 79 GINPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQ-----DDFIQKAPIPVLIVK 138 (138)
T ss_dssp TCCCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTT-----CHHHHHCSSCEEEEC
T ss_pred CCCeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHH-----HHHHhcCCCCEEEeC
Confidence 7888999999999999999999 9999999999999999999 9999 999999999999986
No 10
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.94 E-value=8.4e-27 Score=163.60 Aligned_cols=131 Identities=20% Similarity=0.246 Sum_probs=103.7
Q ss_pred CCcEEEEEeC--CChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCc-------cccchHHHHHHHHhHHHhCC
Q 031262 1 MRKRVMVVVD--QTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDS-------SACCPYLANSLGSLCKACKP 71 (162)
Q Consensus 1 m~~~Ilv~vD--~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 71 (162)
|+++||||+| +|+.+..|++||+.+|+..+++|+++||++........... .+..++.++.+.+.+.. .
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 91 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQ--R 91 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHH--c
Confidence 6799999999 99999999999999999999999999999765432111111 11222223333333333 4
Q ss_pred CC-eEEEEEEe-cCchhHHHHH-HHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 72 EV-EVEALVIQ-GPKLGTVMSQ-VRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 72 ~v-~~~~~v~~-g~~~~~I~~~-a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
++ .+++.+.. |++.+.|+++ +++.++||||||+++++.+. .++||++ ++++++++||||+||
T Consensus 92 g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~~-----~~vl~~a~~PVlvV~ 156 (156)
T 3fg9_A 92 GVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAIG-----PRLARKAPISVIVVR 156 (156)
T ss_dssp TCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCHH-----HHHHHHCSSEEEEEC
T ss_pred CCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecchH-----HHHHHhCCCCEEEeC
Confidence 66 48888888 9999999999 99999999999999999887 4899999 999999999999986
No 11
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.94 E-value=8.6e-27 Score=160.98 Aligned_cols=132 Identities=14% Similarity=0.267 Sum_probs=106.3
Q ss_pred CcEEEEEeCCChh--hHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCC----C----CccccchHHHHHHHHhHHHhC-
Q 031262 2 RKRVMVVVDQTSH--SKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSH----H----DSSACCPYLANSLGSLCKACK- 70 (162)
Q Consensus 2 ~~~Ilv~vD~S~~--s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~- 70 (162)
.++||||+|+|+. +..|++||+.+|+..+++|+++||++........ . ..++..++..+.+++++.+..
T Consensus 1 ~k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (143)
T 3fdx_A 1 SNAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSI 80 (143)
T ss_dssp CCEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 3799999999999 9999999999999899999999999764322111 0 112233445555666666543
Q ss_pred CCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 71 PEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 71 ~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
+++.+++.+..|++.+.|+++++++++||||||+++ +.+.+.++||++ ++++++++||||+||
T Consensus 81 ~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~-----~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 81 PEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNA-----AAVVRHAECSVLVVR 143 (143)
T ss_dssp CGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHH-----HHHHHHCSSEEEEEC
T ss_pred CCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHH-----HHHHHhCCCCEEEeC
Confidence 456788889999999999999999999999999996 789999999999 999999999999986
No 12
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.93 E-value=8.1e-26 Score=161.46 Aligned_cols=136 Identities=23% Similarity=0.386 Sum_probs=96.0
Q ss_pred CCcEEEEEeCCCh---------hhHHHHHHHHHhccC---CCCEEEEEEEeCCCCC-CCC--C--C-Cc------ccc--
Q 031262 1 MRKRVMVVVDQTS---------HSKHAMMWALTHVTN---KGDLLTLLHVVPPPKP-NTS--H--H-DS------SAC-- 54 (162)
Q Consensus 1 m~~~Ilv~vD~S~---------~s~~al~~A~~~a~~---~~~~l~l~hv~~~~~~-~~~--~--~-~~------~~~-- 54 (162)
++++||||+|+|+ .+..|++||+.++.+ .+++|+++||++.... +.. . . +. ++.
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKA 83 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHH
Confidence 4789999999999 999999999998744 5789999999864321 110 0 0 00 011
Q ss_pred -chHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 55 -CPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 55 -~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
.++.++.+.+.+.. .++++++.+..|++.+.|++++++.++||||||++|++.+.++++||++ ++|+++++|
T Consensus 84 ~~~~~l~~~~~~~~~--~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva-----~~vl~~a~~ 156 (175)
T 2gm3_A 84 KGLHLLEFFVNKCHE--IGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVS-----AFCVKHAEC 156 (175)
T ss_dssp HHHHHHHHHHHHHHH--HTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHH-----HHHHHHCSS
T ss_pred HHHHHHHHHHHHHHH--CCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchH-----HHHHhCCCC
Confidence 12222333333333 5788888888999999999999999999999999999999999999999 999999999
Q ss_pred eEEEEecCCC
Q 031262 134 LTVGVRKQSK 143 (162)
Q Consensus 134 pVlvv~~~~~ 143 (162)
|||+|++...
T Consensus 157 pVlvv~~~~~ 166 (175)
T 2gm3_A 157 PVMTIKRNAD 166 (175)
T ss_dssp CEEEEECCGG
T ss_pred CEEEEcCCcC
Confidence 9999997543
No 13
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.93 E-value=6.9e-26 Score=156.19 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=104.9
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCC-CCCCCCCC------CccccchHHHHHHHHhHHHhCCCC
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPP-PKPNTSHH------DSSACCPYLANSLGSLCKACKPEV 73 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v 73 (162)
|+++||||+|+|+.+..|++||..+|+..+++++++||.+. ........ ..+...++..+.++++++. .++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~ 78 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAES--VDY 78 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHH--SSS
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHH--cCC
Confidence 89999999999999999999999999988999999999843 21111100 0112234455566666666 355
Q ss_pred eE-EEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 74 EV-EALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 74 ~~-~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
.+ ...+..|++.+.|++++++.++||||||++ ++.+.+ +||++ ++++++++|||++||+..
T Consensus 79 ~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--lgs~~-----~~vl~~~~~pVlvv~~~~ 140 (141)
T 1jmv_A 79 PISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--LMSST-----RQVMNTIKIDMLVVPLRD 140 (141)
T ss_dssp CCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--HHHHH-----HHHHTTCCSEEEEEECCC
T ss_pred CceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--hcchH-----HHHHhcCCCCEEEeeCCC
Confidence 55 567778999999999999999999999999 888877 48999 999999999999998754
No 14
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.91 E-value=5.3e-24 Score=164.78 Aligned_cols=147 Identities=12% Similarity=0.130 Sum_probs=112.2
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCC--CCCc------cccchHHHHHHHHhHHHh-CC
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTS--HHDS------SACCPYLANSLGSLCKAC-KP 71 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~-~~ 71 (162)
|+++||||+|+|+.+..|++||+.+|+..+++|+++|+++....... .... +...++..+.+++..... ..
T Consensus 6 ~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (319)
T 3olq_A 6 KYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLEA 85 (319)
T ss_dssp CSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57999999999999999999999999999999999999864322111 1100 011112223333333332 27
Q ss_pred CCeEEEEEE-ecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCCC-CCcEE
Q 031262 72 EVEVEALVI-QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSKG-MGGYI 149 (162)
Q Consensus 72 ~v~~~~~v~-~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~~-~~~~~ 149 (162)
++++++.+. .|++.+.|++++++.++||||||+++++.+.+.++||++ ++++++++||||++++.... .+.++
T Consensus 86 ~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~-----~~vl~~~~~PVlvv~~~~~~~~~~Il 160 (319)
T 3olq_A 86 GIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLD-----WQLLRKCPAPVWMVKDKEWPEYGTIV 160 (319)
T ss_dssp TCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHH-----HHHHHHCSSCEEEEESSCCCTTCEEE
T ss_pred CCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccH-----HHHHhcCCCCEEEecCcccccCCeEE
Confidence 889998888 899999999999999999999999999999999999999 99999999999999986544 34566
Q ss_pred Eec
Q 031262 150 IST 152 (162)
Q Consensus 150 ~~~ 152 (162)
+..
T Consensus 161 va~ 163 (319)
T 3olq_A 161 VAA 163 (319)
T ss_dssp EEC
T ss_pred EEE
Confidence 544
No 15
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.90 E-value=1.6e-23 Score=160.55 Aligned_cols=134 Identities=10% Similarity=0.067 Sum_probs=112.5
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI 80 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~ 80 (162)
|+++||||+|+|+.+..|++||+.+|+..+++|+++|+.++ +..++.++.+.+.+.. .++++++.+.
T Consensus 6 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~-----------~~~~~~l~~~~~~~~~--~~~~~~~~~~ 72 (290)
T 3mt0_A 6 AIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR-----------RDHSAALNDLAQELRE--EGYSVSTNQA 72 (290)
T ss_dssp TCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS-----------SCCHHHHHHHHHHHHH--TTCCEEEEEE
T ss_pred hhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCc-----------HHHHHHHHHHHHHHhh--CCCeEEEEEE
Confidence 57999999999999999999999999999999999999873 1334445555544444 6788998887
Q ss_pred -ecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecC-CCCCCcEEEec
Q 031262 81 -QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ-SKGMGGYIIST 152 (162)
Q Consensus 81 -~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~-~~~~~~~~~~~ 152 (162)
.|++.+.|++++++.++||||||+++++.+.+.++||++ ++++++++||||++++. ....+.+++.+
T Consensus 73 ~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~-----~~vl~~~~~PVlvv~~~~~~~~~~Ilva~ 141 (290)
T 3mt0_A 73 WKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDD-----WKLLRFAPCPVLMTKTARPWTGGKILAAV 141 (290)
T ss_dssp CSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHH-----HHHHHHCSSCEEEECCCSCSTTCEEEEEE
T ss_pred eCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHH-----HHHHhcCCCCEEEecCCCCCCCCeEEEEE
Confidence 578999999999999999999999999999999999999 99999999999999943 33344666644
No 16
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.90 E-value=5e-24 Score=163.55 Aligned_cols=143 Identities=11% Similarity=0.109 Sum_probs=112.1
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCC-CC--Cc------cccchHHHHHHHHhHHHhCC
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTS-HH--DS------SACCPYLANSLGSLCKACKP 71 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~-~~--~~------~~~~~~~~~~~~~~~~~~~~ 71 (162)
|+++||||+|+|+.+..|++||+.+|+..+++|+++||++....... .. .. .+..++.++.+.+.+.. .
T Consensus 21 m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 98 (294)
T 3loq_A 21 QSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIEA--A 98 (294)
T ss_dssp TTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHH--T
T ss_pred hhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH--c
Confidence 67899999999999999999999999999999999999976542211 11 10 11222333333444444 6
Q ss_pred CCeEEE-EEE-ecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCC---CCCC
Q 031262 72 EVEVEA-LVI-QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQS---KGMG 146 (162)
Q Consensus 72 ~v~~~~-~v~-~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~---~~~~ 146 (162)
+++++. .+. .|++.+.| ++++.++|+||||+++++.+.+.++||++ ++++++++|||+++++.. ...+
T Consensus 99 g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~-----~~vl~~~~~PVlvv~~~~~~~~~~~ 171 (294)
T 3loq_A 99 GIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVS-----EGVLHDSKVPVYIFKHDMVVNSLFD 171 (294)
T ss_dssp TCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHH-----HHHHHHCSSCEEEECCCTTTTCTTS
T ss_pred CCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHH-----HHHHhcCCCCEEEecCccccCccCC
Confidence 888888 777 89999999 99999999999999999999999999999 999999999999999875 3345
Q ss_pred cEEEec
Q 031262 147 GYIIST 152 (162)
Q Consensus 147 ~~~~~~ 152 (162)
.+++..
T Consensus 172 ~Ilv~~ 177 (294)
T 3loq_A 172 RVLVAY 177 (294)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 666654
No 17
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.90 E-value=1.4e-23 Score=144.25 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=94.1
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEe-CC---CCC----CCCCCCc--cccchHHHHHHHHhHHH--
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVV-PP---PKP----NTSHHDS--SACCPYLANSLGSLCKA-- 68 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~-~~---~~~----~~~~~~~--~~~~~~~~~~~~~~~~~-- 68 (162)
|+++||||+|+|+.+..|++||+.+|+..+++|+++|+. +. ... ..+.... ++..++..+.++++ +.
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 81 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKL 81 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHh
Confidence 789999999999999999999999999999999999998 53 110 0110110 11112222333444 32
Q ss_pred -hCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 69 -CKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 69 -~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
...+ ++++.+..|++.+.|++++++.++||||||++|+ |++ ++++++++||||+||
T Consensus 82 ~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~---------sv~-----~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 82 TGSTE-IPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS---------AYL-----CKVIDGLNLASLIVK 138 (138)
T ss_dssp HSCCC-CCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG---------GGT-----HHHHHHSSSEEEECC
T ss_pred hccCC-cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC---------chH-----HHHHHhCCCceEeeC
Confidence 1355 7777788999999999999999999999999975 788 999999999999985
No 18
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.90 E-value=5.8e-23 Score=158.73 Aligned_cols=145 Identities=14% Similarity=0.223 Sum_probs=111.8
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCC--Cc------cccchHHHHHHHHhHHHh---
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHH--DS------SACCPYLANSLGSLCKAC--- 69 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~--- 69 (162)
|+++||||+|+|+.+..|++||+.+|+..+++|+++||+++........ +. .+..++.++.+.+.+...
T Consensus 18 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 97 (309)
T 3cis_A 18 SSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASLR 97 (309)
T ss_dssp CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5799999999999999999999999998999999999987432111111 10 112223333344444443
Q ss_pred CCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCC-----C
Q 031262 70 KPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK-----G 144 (162)
Q Consensus 70 ~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~-----~ 144 (162)
.+++++++.+..|++.+.|+++++ ++|+||||+++++.+.+.++||++ ++++++++|||+++++... .
T Consensus 98 ~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~-----~~vl~~~~~PVlvv~~~~~~~~~~~ 170 (309)
T 3cis_A 98 AGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVS-----SGLLRHAHCPVVIIHDEDSVMPHPQ 170 (309)
T ss_dssp SCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHH-----HHHHHHCSSCEEEECTTCCCSCSSC
T ss_pred CCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHH-----HHHHHhCCCCEEEEcCCcccCCCCC
Confidence 247889998989999999999997 899999999999999999999999 9999999999999998653 2
Q ss_pred CCcEEEec
Q 031262 145 MGGYIIST 152 (162)
Q Consensus 145 ~~~~~~~~ 152 (162)
.+.+++..
T Consensus 171 ~~~Ilv~~ 178 (309)
T 3cis_A 171 QAPVLVGV 178 (309)
T ss_dssp CCCEEEEC
T ss_pred CCeEEEEe
Confidence 34555543
No 19
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.89 E-value=2.8e-23 Score=159.16 Aligned_cols=132 Identities=11% Similarity=0.177 Sum_probs=104.8
Q ss_pred CcEEEEEeCCChh-------hHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCc----cccchHHHHHHHHhHHHhC
Q 031262 2 RKRVMVVVDQTSH-------SKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDS----SACCPYLANSLGSLCKACK 70 (162)
Q Consensus 2 ~~~Ilv~vD~S~~-------s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 70 (162)
.++||+|+|+|+. +..++++|..+++..+++++++||++....... .+. ++..++..+.++++++++
T Consensus 134 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~- 211 (290)
T 3mt0_A 134 GGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSA-DPTFQLSETIEARYREACRTFQAEY- 211 (290)
T ss_dssp TCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC----------CHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCcccccc-CchhHHHHHHHHHHHHHHHHHHHHc-
Confidence 5899999999998 999999999999999999999999976433211 111 112233445555666664
Q ss_pred CCCe-EEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 71 PEVE-VEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 71 ~~v~-~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
++. +...+..|++.+.|+++++++++||||||++|++.+.++++||++ ++++++++||||++|+.
T Consensus 212 -g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~-----~~vl~~~~~pVLvv~~~ 277 (290)
T 3mt0_A 212 -GFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTA-----EVVLDTLESDVLVLKPD 277 (290)
T ss_dssp -TCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHH-----HHHHTTCSSEEEEECCH
T ss_pred -CCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHH-----HHHHhcCCCCEEEECCC
Confidence 442 456777899999999999999999999999999999999999999 99999999999999874
No 20
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.89 E-value=9.8e-24 Score=159.75 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=108.6
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCC----CCCC----Cc-----------cccchHHHHHHH
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPN----TSHH----DS-----------SACCPYLANSLG 63 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~----~~~~----~~-----------~~~~~~~~~~~~ 63 (162)
++||||+|+|+.+..|++||+.+|+..+++++++||++..... .... .. .+..++.++.+.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVR 80 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999899999999998643211 0000 00 011122222333
Q ss_pred HhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCC-cccccccccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 64 SLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHS-AFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 64 ~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~-~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
+.+.. .++++++.+..|++.+.|+++ +.++|+||||+++++ .+.+.++||++ ++++++++|||+++|+..
T Consensus 81 ~~~~~--~g~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~-----~~v~~~a~~PVlvv~~~~ 151 (268)
T 3ab8_A 81 QSALA--AGVAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTA-----DRVLRASPVPVLLAPGEP 151 (268)
T ss_dssp HHHHH--TTCCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHH-----HHHHHHCSSCEEEECSSC
T ss_pred HHHHh--CCCCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhH-----HHHHHhCCCCEEEECCCC
Confidence 33333 578888888899999999999 789999999999998 89999999999 999999999999999876
Q ss_pred CCCCcEEEec
Q 031262 143 KGMGGYIIST 152 (162)
Q Consensus 143 ~~~~~~~~~~ 152 (162)
...+.+++..
T Consensus 152 ~~~~~ilv~~ 161 (268)
T 3ab8_A 152 VELEGALLGY 161 (268)
T ss_dssp CCCCEEEEEC
T ss_pred CCCCEEEEEE
Confidence 5455666654
No 21
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.89 E-value=1.3e-22 Score=155.61 Aligned_cols=124 Identities=15% Similarity=0.276 Sum_probs=109.4
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
.++||+|+|+|+.+..++++|..+++..+++++++|+.+... .++..+.+.+.... .+++++..+..
T Consensus 170 ~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-----------~~~~l~~~~~~l~~--~~~~~~~~~~~ 236 (294)
T 3loq_A 170 FDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-----------KTADLRVMEEVIGA--EGIEVHVHIES 236 (294)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-----------CHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-----------HHHHHHHHHHHHHH--cCCcEEEEEec
Confidence 589999999999999999999999998999999999987643 24455555555555 46778888889
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
|++.++|.+++++.++||||||+++++.+.++++||++ ++++++++||||++++..+
T Consensus 237 g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~-----~~vl~~~~~pvLvv~~~~~ 293 (294)
T 3loq_A 237 GTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTS-----ESVIRRSPVPVFVCKRGDD 293 (294)
T ss_dssp SCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHH-----HHHHHHCSSCEEEECSCTT
T ss_pred CCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHH-----HHHHhcCCCCEEEECCCCC
Confidence 99999999999999999999999999999999999999 9999999999999988654
No 22
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.87 E-value=5.9e-22 Score=153.07 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=103.6
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCc-cccchHHHHHHHHhHHHh---CCCCeEEE
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDS-SACCPYLANSLGSLCKAC---KPEVEVEA 77 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~v~~~~ 77 (162)
.++||||+|+|+.+..+++||..++...+++|+++||.++.......... .+..++..+.+++....+ .++++++.
T Consensus 171 ~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 250 (309)
T 3cis_A 171 QAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGWQERYPNVAITR 250 (309)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTHHHHCTTSCEEE
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHHHhhCCCCcEEE
Confidence 47899999999999999999999999889999999998654321111110 111122222233322221 25788998
Q ss_pred EEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 78 LVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 78 ~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
.+..|++.+.|+++++ ++||||||+++++.+.++++||++ ++++++++||||++++.
T Consensus 251 ~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~-----~~vl~~~~~pVlvv~~~ 307 (309)
T 3cis_A 251 VVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVG-----ETVAQLARTPVIVARES 307 (309)
T ss_dssp EEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHH-----HHHHHHCSSCEEEECC-
T ss_pred EEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHH-----HHHHhcCCCCEEEeCCC
Confidence 8889999999999998 899999999999999999999999 99999999999999863
No 23
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.87 E-value=3.7e-22 Score=154.39 Aligned_cols=135 Identities=14% Similarity=0.170 Sum_probs=107.4
Q ss_pred CcEEEEEeCCCh-------hhHHHHHHHHHhccCC--CCEEEEEEEeCCCCCCCCCC-C--c-----cccchHHHHHHHH
Q 031262 2 RKRVMVVVDQTS-------HSKHAMMWALTHVTNK--GDLLTLLHVVPPPKPNTSHH-D--S-----SACCPYLANSLGS 64 (162)
Q Consensus 2 ~~~Ilv~vD~S~-------~s~~al~~A~~~a~~~--~~~l~l~hv~~~~~~~~~~~-~--~-----~~~~~~~~~~~~~ 64 (162)
.++||+|+|+|+ .+..++++|..+++.. +++|+++||++......... + . ++..++..+.+++
T Consensus 156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (319)
T 3olq_A 156 YGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMKE 235 (319)
T ss_dssp TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHHH
Confidence 589999999999 4699999999999987 99999999997654321111 1 0 1122333445555
Q ss_pred hHHHhCCCC-eEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 65 LCKACKPEV-EVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 65 ~~~~~~~~v-~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
+++++ ++ .+...+..|++.+.|++++++.++||||||+++++.+.++++||++ ++++++++||||+||+...
T Consensus 236 ~~~~~--~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~-----~~vl~~~~~pVLvv~~~~~ 308 (319)
T 3olq_A 236 LRQKF--SIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTA-----EQLIDHIKCDLLAIKPDGF 308 (319)
T ss_dssp HHHHT--TCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHH-----HHHHTTCCSEEEEECCTTC
T ss_pred HHHHh--CCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHH-----HHHHhhCCCCEEEECCCCC
Confidence 66653 33 3456677899999999999999999999999999999999999999 9999999999999998653
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.81 E-value=9.2e-20 Score=137.84 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=97.5
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
+++||+|+|+|+.+..++++|..++...+++++++|+.++.. ..++..+.+.+.... .++++++.+..
T Consensus 154 ~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~----------~~~~~l~~~~~~l~~--~~~~~~~~~~~ 221 (268)
T 3ab8_A 154 LEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA----------RAEAWALEAEAYLRD--HGVEASALVLG 221 (268)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH----------HHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred CCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH----------HHHHHHHHHHHHHHH--cCCceEEEEeC
Confidence 579999999999999999999999988899999999986531 223344444444444 57888888889
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
|++.++|++++++. ||||||+ .+.++++||++ ++++++++||||++|
T Consensus 222 g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~-----~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 222 GDAADHLLRLQGPG--DLLALGA----PVRRLVFGSTA-----ERVIRNAQGPVLTAR 268 (268)
T ss_dssp SCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCCHH-----HHHHHHCSSCEEEEC
T ss_pred CChHHHHHHHHHhC--CEEEECC----cccccEeccHH-----HHHHhcCCCCEEEeC
Confidence 99999999999988 9999999 57889999999 999999999999985
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=95.82 E-value=0.17 Score=34.00 Aligned_cols=126 Identities=16% Similarity=0.075 Sum_probs=74.3
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCC-CEEEE-EEEeCCCCCCCCCCC--ccc-cchHHHHHHHHhHHHhCCCCeEE
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKG-DLLTL-LHVVPPPKPNTSHHD--SSA-CCPYLANSLGSLCKACKPEVEVE 76 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~-~~l~l-~hv~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~v~~~ 76 (162)
|++|||-+...-.+.....-...+..... ..+.+ +=.. +. .....+. ... ..+++...+..+. ..|..+.
T Consensus 1 m~~vlVlae~tl~~~dl~~vl~~l~~~~~~~~f~VLVPa~-~~-~a~~~e~~~a~~~A~~~l~~sl~aL~---~~G~~a~ 75 (138)
T 2iel_A 1 MARYLVVAHRTAKSPELAAKLKELLAQDPEARFVLLVPAV-PP-PGWVYEENEVRRRAEEEAAAAKRALE---AQGIPVE 75 (138)
T ss_dssp -CEEEEECSTTTTCHHHHHHHHHHHHHCTTCEEEEEEEEE-CC-CCSCC--CHHHHHHHHHHHHHHHHHH---TTTCCCS
T ss_pred CceEEEEecCccCcHhHHHHHHHhhcCCCceEEEEEecCC-CC-cccccChHHHHHHHHHHHHHHHHHHH---HcCCccc
Confidence 57889988877766666655455554443 44422 2221 11 1111111 011 1122222233332 3688888
Q ss_pred -EEEEecCchhHHHHHHHhcC--CCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 77 -ALVIQGPKLGTVMSQVRKLE--VSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 77 -~~v~~g~~~~~I~~~a~~~~--~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
-.+.+++|..+|.....+.. +|=||+-+..+. ..++|--..+ .+.-+ ..+||+=+-
T Consensus 76 ~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~-vs~~fh~Dwa-----srAr~-~gvPVlhl~ 134 (138)
T 2iel_A 76 EAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPPG-LSRWLRLDVH-----TQAER-FGLPVIHVI 134 (138)
T ss_dssp EEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCTT-TCHHHHTTHH-----HHGGG-GSSCEEEEE
T ss_pred ccccCCCChHHHHHHHHHhcCCCCceEEEEcCCch-HHHHHhccHH-----HHHHh-cCCCEEEEe
Confidence 99999999999999999999 999999998764 3344433333 44445 899998664
No 26
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=95.25 E-value=0.13 Score=41.64 Aligned_cols=100 Identities=13% Similarity=0.042 Sum_probs=70.2
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
..+|+|++.|..+|.-++.++.++....+.++.++|+...... ....+-.+.++++|+. -++++.+.-..
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg--------~~s~~~~~~v~~~~~~--lgi~~~v~~~~ 87 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRG--------RESEEEMEFVKRFCVE--RRILCETAQID 87 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCT--------HHHHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCc--------cccHHHHHHHHHHHHH--cCCcEEEEEec
Confidence 3579999999999999998888876667788999999754321 1223455678888888 46665544332
Q ss_pred --------c-Cc--------hhHHHHHHHhcCCCEEEEccCCCCccc
Q 031262 82 --------G-PK--------LGTVMSQVRKLEVSVLVLGQKKHSAFI 111 (162)
Q Consensus 82 --------g-~~--------~~~I~~~a~~~~~dliVmG~~~~~~~~ 111 (162)
| ++ ...+.+++++++++.|+.|+|.....+
T Consensus 88 ~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD~aE 134 (464)
T 3a2k_A 88 VPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDDQVE 134 (464)
T ss_dssp CHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHHHH
T ss_pred hhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHHHHH
Confidence 1 11 245667788999999999998654333
No 27
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=95.04 E-value=0.24 Score=37.88 Aligned_cols=96 Identities=7% Similarity=-0.049 Sum_probs=66.7
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCE-EEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDL-LTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI 80 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~-l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~ 80 (162)
.++|+|++.|..+|.-++..+.+.....+.+ +.++|+...... ...+-.+.++++|+.+ +++..+.-.
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~---------~s~~~~~~v~~~a~~l--gi~~~v~~~ 92 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRE---------SAERDEEFCKEFAKER--NMKIFVGKE 92 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSST---------HHHHHHHHHHHHHHHH--TCCEEEEEC
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCc---------ccHHHHHHHHHHHHHc--CCcEEEEEE
Confidence 3689999999999999888888776556777 999999644321 2244556778888884 555554332
Q ss_pred e--------c-Cc--------hhHHHHHHHhcCCCEEEEccCCCC
Q 031262 81 Q--------G-PK--------LGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 81 ~--------g-~~--------~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
. | ++ ...+.+.+++.+++.|+.|++...
T Consensus 93 ~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD 137 (317)
T 1wy5_A 93 DVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLND 137 (317)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHH
T ss_pred echhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhH
Confidence 2 1 11 235666788999999999998543
No 28
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=91.79 E-value=1.1 Score=34.43 Aligned_cols=93 Identities=10% Similarity=0.042 Sum_probs=62.7
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE--
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI-- 80 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~-- 80 (162)
.+++|++.+.++|.-.+..+.+.....+.++.++|+..... ..+..+..+++++++ ++++.+.-.
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~-----------~~et~~~v~~~~~~~--gi~l~v~~~~~ 113 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWK-----------FQEMYRFRDQMVEEM--GLDLITHINPD 113 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCC-----------CHHHHHHHHHHHHTT--TCCEEEECC--
T ss_pred CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCC-----------CHHHHHHHHHHHHHc--CCCEEEEeCch
Confidence 46899999999999999888887654455688888854332 245677788888874 444443221
Q ss_pred ---ecCc--------------hhHHHHHHHhcCCCEEEEccCCCC
Q 031262 81 ---QGPK--------------LGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 81 ---~g~~--------------~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
.|.. .+.+.+.++++++|.++.|.+...
T Consensus 114 ~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~De 158 (325)
T 1zun_A 114 GVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDE 158 (325)
T ss_dssp ------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTS
T ss_pred HHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccch
Confidence 1211 124667778889999999987643
No 29
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=91.39 E-value=0.48 Score=38.39 Aligned_cols=115 Identities=10% Similarity=0.128 Sum_probs=70.7
Q ss_pred CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhC-CCCeEEEEEEecCchhHH
Q 031262 10 DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACK-PEVEVEALVIQGPKLGTV 88 (162)
Q Consensus 10 D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~v~~g~~~~~I 88 (162)
|.--....||..|++.+...+.++..+.++++.... .......=+.+.++++.+++. .|. ...+..|++.+.|
T Consensus 46 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~----~~~~r~~Fl~~sL~~L~~~L~~~G~--~L~v~~g~~~~~l 119 (482)
T 2xry_A 46 DQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLE----AGIRQYEFMLKGLQELEVSLSRKKI--PSFFLRGDPGEKI 119 (482)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGG----SCHHHHHHHHHHHHHHHHHHHHTTC--CEEEEESCHHHHH
T ss_pred CCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhc----cCHHHHHHHHHHHHHHHHHHHHcCC--cEEEEeCCHHHHH
Confidence 444445678888887765556778899998764321 111222333455555544432 354 4455679999999
Q ss_pred HHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 89 MSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 89 ~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
.+.+++.+++-|+.-.... ...+.. . +.+.+..+|++..+..
T Consensus 120 ~~l~~~~~~~~V~~~~~~~-~~~~~~----~-----~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 120 SRFVKDYNAGTLVTDFSPL-RIKNQW----I-----EKVISGISIPFFEVDA 161 (482)
T ss_dssp HHHHHHTTCSEEEEECCCS-HHHHHH----H-----HHHHHHCCSCEEEECC
T ss_pred HHHHHHcCCCEEEEecccc-hhHHHH----H-----HHHHHHcCCEEEEEeC
Confidence 9999999999998765432 221111 1 4455555888877754
No 30
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=90.85 E-value=2.5 Score=29.64 Aligned_cols=73 Identities=15% Similarity=0.158 Sum_probs=48.8
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEec-CchhHHHHHH---HhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQG-PKLGTVMSQV---RKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g-~~~~~I~~~a---~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
...+...+.+++ -++.++..+..- +.-+.+.+++ ++.+++.+|.|+-+...+.. -+...+.
T Consensus 36 ~v~~~a~~~L~~--~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpG-------------vvAa~T~ 100 (181)
T 4b4k_A 36 ETMKYACDILDE--LNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPG-------------MVAAKTN 100 (181)
T ss_dssp HHHHHHHHHHHH--TTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH-------------HHHTTCC
T ss_pred HHHHHHHHHHHH--cCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchh-------------hHHhcCC
Confidence 344455555555 468888777653 3345555554 55778999999977666553 3456788
Q ss_pred ceEEEEecCCCC
Q 031262 133 CLTVGVRKQSKG 144 (162)
Q Consensus 133 ~pVlvv~~~~~~ 144 (162)
.||+-||..+..
T Consensus 101 ~PVIGVPv~s~~ 112 (181)
T 4b4k_A 101 LPVIGVPVQSKA 112 (181)
T ss_dssp SCEEEEECCCTT
T ss_pred CCEEEEecCCCC
Confidence 999999987654
No 31
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=90.71 E-value=2.9 Score=29.11 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=47.1
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEec-CchhHHHHH---HHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQG-PKLGTVMSQ---VRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~g-~~~~~I~~~---a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
..+...+.++. -+++++..+..- +.-+.+.++ +++.+++.||.|+-+.+.+.. -+...+.+
T Consensus 27 v~~~a~~~l~~--~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpg-------------vvA~~t~~ 91 (173)
T 4grd_A 27 VMKHAVAILQE--FGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPG-------------MLAAKTTV 91 (173)
T ss_dssp HHHHHHHHHHH--TTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHH-------------HHHHHCCS
T ss_pred HHHHHHHHHHH--cCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchh-------------hheecCCC
Confidence 33444445555 467788777543 334555555 455788999999977666553 34677889
Q ss_pred eEEEEecCCCC
Q 031262 134 LTVGVRKQSKG 144 (162)
Q Consensus 134 pVlvv~~~~~~ 144 (162)
||+-||-.+..
T Consensus 92 PVIgVPv~~~~ 102 (173)
T 4grd_A 92 PVLGVPVASKY 102 (173)
T ss_dssp CEEEEEECCTT
T ss_pred CEEEEEcCCCC
Confidence 99999876553
No 32
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=89.83 E-value=3.4 Score=28.67 Aligned_cols=72 Identities=8% Similarity=0.024 Sum_probs=47.1
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEec-CchhHHHHH---HHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQG-PKLGTVMSQ---VRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~g-~~~~~I~~~---a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
..+...+.++. -++.++..+..- ...+.+.++ +++.+++.+|.++-+.+.+. .-+...+.+
T Consensus 21 v~~~a~~~l~~--~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp-------------gvvA~~t~~ 85 (169)
T 3trh_A 21 TMETAFTELKS--LGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLA-------------GTIAAHTLK 85 (169)
T ss_dssp HHHHHHHHHHH--TTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHH-------------HHHHHTCSS
T ss_pred HHHHHHHHHHH--cCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH-------------HHHHhcCCC
Confidence 34445555555 467788777542 334444444 55678999999987766555 335677889
Q ss_pred eEEEEecCCCC
Q 031262 134 LTVGVRKQSKG 144 (162)
Q Consensus 134 pVlvv~~~~~~ 144 (162)
||+-||..+..
T Consensus 86 PVIgVP~~~~~ 96 (169)
T 3trh_A 86 PVIGVPMAGGS 96 (169)
T ss_dssp CEEEEECCCST
T ss_pred CEEEeecCCCC
Confidence 99999886543
No 33
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=89.62 E-value=3.8 Score=28.38 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=48.2
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEec-CchhHHHHHHH---hcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQG-PKLGTVMSQVR---KLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~g-~~~~~I~~~a~---~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
..+...+.++. -++.++..+..- ...+.+.++++ +.+++.+|.++-+.+.+. .-+...+.+
T Consensus 20 v~~~a~~~l~~--~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp-------------gvvA~~t~~ 84 (166)
T 3oow_A 20 TMKECCDILDN--LGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLP-------------GMVAAKTTL 84 (166)
T ss_dssp HHHHHHHHHHH--TTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHH-------------HHHHHTCSS
T ss_pred HHHHHHHHHHH--cCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhH-------------HHHHhccCC
Confidence 34445555555 477788777653 33566666655 456899999997766655 335677889
Q ss_pred eEEEEecCCCC
Q 031262 134 LTVGVRKQSKG 144 (162)
Q Consensus 134 pVlvv~~~~~~ 144 (162)
||+-||..+..
T Consensus 85 PVIgVP~~~~~ 95 (166)
T 3oow_A 85 PVLGVPVKSST 95 (166)
T ss_dssp CEEEEECCCTT
T ss_pred CEEEeecCcCC
Confidence 99999886543
No 34
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=89.25 E-value=4.2 Score=28.37 Aligned_cols=73 Identities=14% Similarity=0.089 Sum_probs=48.1
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEec-CchhHHHHHHH---hcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQG-PKLGTVMSQVR---KLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g-~~~~~I~~~a~---~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
...+...+.++. -++.++..+..- ...+.+.++++ +.+++.+|.++-+.+.+. .-+...++
T Consensus 26 ~v~~~a~~~L~~--~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp-------------gvvA~~t~ 90 (174)
T 3kuu_A 26 ATMQFAADVLTT--LNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLP-------------GMLAAKTL 90 (174)
T ss_dssp HHHHHHHHHHHH--TTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHH-------------HHHHHTCS
T ss_pred HHHHHHHHHHHH--cCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH-------------HHHHhccC
Confidence 334445555555 467788777653 33555555554 567899999987766555 33567788
Q ss_pred ceEEEEecCCCC
Q 031262 133 CLTVGVRKQSKG 144 (162)
Q Consensus 133 ~pVlvv~~~~~~ 144 (162)
+||+-||..+..
T Consensus 91 ~PVIgVP~~~~~ 102 (174)
T 3kuu_A 91 VPVLGVPVQSAA 102 (174)
T ss_dssp SCEEEEEECCTT
T ss_pred CCEEEeeCCCCC
Confidence 999999886543
No 35
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=89.14 E-value=3.9 Score=28.03 Aligned_cols=67 Identities=15% Similarity=0.028 Sum_probs=47.7
Q ss_pred HHHHHHhHHHhCCCCeEEEEEEe-cCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEE
Q 031262 59 ANSLGSLCKACKPEVEVEALVIQ-GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVG 137 (162)
Q Consensus 59 ~~~~~~~~~~~~~~v~~~~~v~~-g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlv 137 (162)
.+...+.++. -+++++..+.. ....+.+.+++++.+.+.+|.++-+.+.+.. -+...+++||+-
T Consensus 15 ~~~a~~~l~~--~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpg-------------vva~~t~~PVIg 79 (157)
T 2ywx_A 15 AEKAVNILKE--FGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPG-------------VVASLTTKPVIA 79 (157)
T ss_dssp HHHHHHHHHH--TTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHH-------------HHHTTCSSCEEE
T ss_pred HHHHHHHHHH--cCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHH-------------HHHhccCCCEEE
Confidence 3444455555 46778877764 3457888899887666999999977666653 345667899999
Q ss_pred Eec
Q 031262 138 VRK 140 (162)
Q Consensus 138 v~~ 140 (162)
||.
T Consensus 80 VP~ 82 (157)
T 2ywx_A 80 VPV 82 (157)
T ss_dssp EEE
T ss_pred ecC
Confidence 988
No 36
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=89.02 E-value=0.51 Score=38.59 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=58.3
Q ss_pred CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhC-CCCeEEEEEEecCchhHH
Q 031262 10 DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACK-PEVEVEALVIQGPKLGTV 88 (162)
Q Consensus 10 D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~v~~g~~~~~I 88 (162)
|..-....||..|++.+...+.+|..++++++.... .........=+.+.++++.+++. .| ....+..|++.+.
T Consensus 47 DLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~--~~~~~~r~~FL~~sL~dL~~~L~~lG--~~L~v~~G~p~~v- 121 (506)
T 3umv_A 47 DQRLADNWALLHAAGLAAASASPLAVAFALFPRPFL--LSARRRQLGFLLRGLRRLAADAAARH--LPFFLFTGGPAEI- 121 (506)
T ss_dssp CCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCG--GGCCHHHHHHHHHHHHHHHHHHHHTT--CCEEEESSCTTHH-
T ss_pred CcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhc--cCCCHHHHHHHHHHHHHHHHHHHHcC--CceEEEecChHHH-
Confidence 444456678999998876667789999998765221 11112222334455555554431 34 4556678999988
Q ss_pred HHHHHhcCCCEEEE
Q 031262 89 MSQVRKLEVSVLVL 102 (162)
Q Consensus 89 ~~~a~~~~~dliVm 102 (162)
.+.+++.+++.|+.
T Consensus 122 ~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 122 PALVQRLGASTLVA 135 (506)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHhcCCCEEEe
Confidence 99999999999986
No 37
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=88.90 E-value=3.7 Score=28.38 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=46.9
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEe-cCchhHHHHHH---HhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQ-GPKLGTVMSQV---RKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~-g~~~~~I~~~a---~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
..+...+.++. -+++++..+.. ....+.+.+++ ++.+++.+|.++-+.+.+. .-+...+++
T Consensus 18 v~~~a~~~l~~--~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp-------------gvvA~~t~~ 82 (163)
T 3ors_A 18 IMQESCNMLDY--FEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLP-------------GMVASLTTL 82 (163)
T ss_dssp HHHHHHHHHHH--TTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH-------------HHHHHHCSS
T ss_pred HHHHHHHHHHH--cCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH-------------HHHHhccCC
Confidence 34444555555 46778877754 23355555554 4567899999987766555 335677889
Q ss_pred eEEEEecCCC
Q 031262 134 LTVGVRKQSK 143 (162)
Q Consensus 134 pVlvv~~~~~ 143 (162)
||+-||..+.
T Consensus 83 PVIgVP~~~~ 92 (163)
T 3ors_A 83 PVIGVPIETK 92 (163)
T ss_dssp CEEEEEECCT
T ss_pred CEEEeeCCCC
Confidence 9999987654
No 38
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=88.72 E-value=4.5 Score=28.09 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=47.3
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEe-cCchhHHHHHHH---hcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQ-GPKLGTVMSQVR---KLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~-g~~~~~I~~~a~---~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
..+...+.++. -+++++..+.. ....+.+.++++ +.+++.+|.++-+.+.+.. -+...+.+
T Consensus 26 v~~~a~~~L~~--~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg-------------vvA~~t~~ 90 (170)
T 1xmp_A 26 TMKYACDILDE--LNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPG-------------MVAAKTNL 90 (170)
T ss_dssp HHHHHHHHHHH--TTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH-------------HHHTTCCS
T ss_pred HHHHHHHHHHH--cCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHH-------------HHHhccCC
Confidence 34444555555 46778877764 334566666665 4568999999877666553 34566789
Q ss_pred eEEEEecCCC
Q 031262 134 LTVGVRKQSK 143 (162)
Q Consensus 134 pVlvv~~~~~ 143 (162)
||+-||..+.
T Consensus 91 PVIgVP~~~~ 100 (170)
T 1xmp_A 91 PVIGVPVQSK 100 (170)
T ss_dssp CEEEEEECCT
T ss_pred CEEEeeCCCC
Confidence 9999998654
No 39
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=88.63 E-value=3.9 Score=28.53 Aligned_cols=72 Identities=8% Similarity=0.030 Sum_probs=47.0
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEec-Cch---hHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQG-PKL---GTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g-~~~---~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
...+...+.++. -+++++..+..- ... ..+.+.+++.+++.+|.++-+.+.+. .-+...+.
T Consensus 21 ~v~~~a~~~L~~--~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp-------------gvvA~~t~ 85 (174)
T 3lp6_A 21 PVMADAAAALAE--FDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLP-------------GMVAAATP 85 (174)
T ss_dssp HHHHHHHHHHHH--TTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHH-------------HHHHHHCS
T ss_pred HHHHHHHHHHHH--cCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhH-------------HHHHhccC
Confidence 334445555555 467788777542 233 44444466678999999997766555 33567788
Q ss_pred ceEEEEecCCC
Q 031262 133 CLTVGVRKQSK 143 (162)
Q Consensus 133 ~pVlvv~~~~~ 143 (162)
+||+-||..+.
T Consensus 86 ~PVIgVP~~~~ 96 (174)
T 3lp6_A 86 LPVIGVPVPLG 96 (174)
T ss_dssp SCEEEEEECCS
T ss_pred CCEEEeeCCCC
Confidence 99999987643
No 40
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=88.37 E-value=4.2 Score=28.60 Aligned_cols=72 Identities=7% Similarity=0.135 Sum_probs=47.5
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEe-cCchhHHHHHHH---hcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQ-GPKLGTVMSQVR---KLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~-g~~~~~I~~~a~---~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
...+...+.++. -+++++..+.. ....+.+.++++ +.+++.+|.++-+.+.+. .-+...++
T Consensus 27 ~v~~~a~~~L~~--~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp-------------gvvA~~t~ 91 (183)
T 1o4v_A 27 PVMKQAAEILEE--FGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLP-------------GMVASITH 91 (183)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH-------------HHHHHHCS
T ss_pred HHHHHHHHHHHH--cCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccH-------------HHHHhccC
Confidence 334444555555 47788877764 233455555544 567899999987766555 33567788
Q ss_pred ceEEEEecCCC
Q 031262 133 CLTVGVRKQSK 143 (162)
Q Consensus 133 ~pVlvv~~~~~ 143 (162)
+||+-||..+.
T Consensus 92 ~PVIgVP~~~~ 102 (183)
T 1o4v_A 92 LPVIGVPVKTS 102 (183)
T ss_dssp SCEEEEEECCT
T ss_pred CCEEEeeCCCC
Confidence 99999998654
No 41
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=88.14 E-value=5.4 Score=28.23 Aligned_cols=89 Identities=4% Similarity=0.012 Sum_probs=59.3
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEec
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQG 82 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g 82 (162)
.+|+|++.|..+|.-.+..+.+.. .++.++|+..... ..+..+.++++++. -++++.+.-...
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~~-----------~~e~~~~v~~~~~~--~gi~~~v~~~~~ 107 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYL-----------FPETYRFIDELTDK--LKLNLKVYRATE 107 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSCB-----------CHHHHHHHHHHHHH--TTCEEEEEECSS
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCCC-----------CHHHHHHHHHHHHH--hCCcEEEEeCCC
Confidence 489999999999998888877753 3577888865431 14556778888888 466655443221
Q ss_pred C----------ch----------------hHHHHHHHhcCCCEEEEccCCCC
Q 031262 83 P----------KL----------------GTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 83 ~----------~~----------------~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
. .. ..+.+.+++++++.++.|.+...
T Consensus 108 ~~~~~~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd 159 (215)
T 1sur_A 108 SAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ 159 (215)
T ss_dssp CHHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTS
T ss_pred CHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhh
Confidence 1 00 13445677788889999987543
No 42
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=87.61 E-value=4.9 Score=27.61 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=46.6
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEec-CchhHHHHHHH---hc-CCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQG-PKLGTVMSQVR---KL-EVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~g-~~~~~I~~~a~---~~-~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..+...+.++. -+++++..+..- ...+.+.++++ +. +++.+|.++-+.+.+. .-+...++
T Consensus 17 v~~~a~~~l~~--~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lp-------------gvvA~~t~ 81 (159)
T 3rg8_A 17 HAEKIASELKT--FGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALS-------------GFVDGFVK 81 (159)
T ss_dssp HHHHHHHHHHH--TTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHH-------------HHHHHHSS
T ss_pred HHHHHHHHHHH--cCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhH-------------HHHHhccC
Confidence 34444555555 477788777542 33555655554 33 5899999997766655 33567788
Q ss_pred ceEEEEecCCC
Q 031262 133 CLTVGVRKQSK 143 (162)
Q Consensus 133 ~pVlvv~~~~~ 143 (162)
+||+-||..+.
T Consensus 82 ~PVIgVP~~~~ 92 (159)
T 3rg8_A 82 GATIACPPPSD 92 (159)
T ss_dssp SCEEECCCCCC
T ss_pred CCEEEeeCCCC
Confidence 99999986543
No 43
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=87.57 E-value=4.7 Score=32.52 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=30.6
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCC
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPP 41 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~ 41 (162)
+++|+|++.+-.+|.-++.|+.+. +.+++.+|+.-.
T Consensus 10 ~~KVvVA~SGGlDSSvll~~L~e~----G~eViavtvd~G 45 (455)
T 1k92_A 10 GQRIGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLG 45 (455)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEECC
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEEcC
Confidence 468999999999999999998763 788999998744
No 44
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=87.53 E-value=5.7 Score=27.88 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=47.7
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEe-cCchhHHHHHHH---hcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQ-GPKLGTVMSQVR---KLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~-g~~~~~I~~~a~---~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
..+...+.++. -++.++..+.. ....+.+.++++ +.+++.||.|+-+.+.+. .-+...+.+
T Consensus 36 v~~~a~~~L~~--~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp-------------gvvA~~t~~ 100 (182)
T 1u11_A 36 TMRHADALLTE--LEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLP-------------GMCAAWTRL 100 (182)
T ss_dssp HHHHHHHHHHH--TTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH-------------HHHHHHCSS
T ss_pred HHHHHHHHHHH--cCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhH-------------HHHHhccCC
Confidence 33444455555 46778877764 334566666665 456899999987766555 335677889
Q ss_pred eEEEEecCCC
Q 031262 134 LTVGVRKQSK 143 (162)
Q Consensus 134 pVlvv~~~~~ 143 (162)
||+-|+..+.
T Consensus 101 PVIgVP~~~~ 110 (182)
T 1u11_A 101 PVLGVPVESR 110 (182)
T ss_dssp CEEEEEECCT
T ss_pred CEEEeeCCCC
Confidence 9999988654
No 45
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=87.32 E-value=6.3 Score=28.16 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=29.4
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCC
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPP 41 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~ 41 (162)
+|++++|++.+-.+|.-++.++.+.. .+++.+|+...
T Consensus 1 ~~~kvvv~lSGG~DS~~~l~ll~~~~----~~v~av~~~~g 37 (232)
T 2pg3_A 1 GMKRAVVVFSGGQDSTTCLIQALQDY----DDVHCITFDYG 37 (232)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHHC----SEEEEEEEESS
T ss_pred CCCCEEEEecCcHHHHHHHHHHHHcC----CCEEEEEEECC
Confidence 46899999999999999988887642 57888887643
No 46
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=86.18 E-value=7.6 Score=27.94 Aligned_cols=85 Identities=9% Similarity=0.042 Sum_probs=53.2
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI 80 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~ 80 (162)
+++||.|-+.++.....++-.+..- ..+.++.++ +.... . ...+.+++ .++.+...-.
T Consensus 11 ~~~ri~vl~SG~gsnl~all~~~~~--~~~~eI~~V--is~~~-a---------------~~~~~A~~--~gIp~~~~~~ 68 (215)
T 3da8_A 11 APARLVVLASGTGSLLRSLLDAAVG--DYPARVVAV--GVDRE-C---------------RAAEIAAE--ASVPVFTVRL 68 (215)
T ss_dssp SSEEEEEEESSCCHHHHHHHHHSST--TCSEEEEEE--EESSC-C---------------HHHHHHHH--TTCCEEECCG
T ss_pred CCcEEEEEEeCChHHHHHHHHHHhc--cCCCeEEEE--EeCCc-h---------------HHHHHHHH--cCCCEEEeCc
Confidence 4678999999998888887776632 334566554 33321 1 12445555 4666544311
Q ss_pred ec--Cc---hhHHHHHHHhcCCCEEEEccCCC
Q 031262 81 QG--PK---LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 81 ~g--~~---~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.. +. .+.+.+..++.++|++|+...++
T Consensus 69 ~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~~ 100 (215)
T 3da8_A 69 ADHPSRDAWDVAITAATAAHEPDLVVSAGFMR 100 (215)
T ss_dssp GGSSSHHHHHHHHHHHHHTTCCSEEEEEECCS
T ss_pred ccccchhhhhHHHHHHHHhhCCCEEEEcCchh
Confidence 11 11 46788999999999999988753
No 47
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=85.95 E-value=7.8 Score=27.87 Aligned_cols=86 Identities=10% Similarity=0.105 Sum_probs=51.6
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
++||.|-+.++.....++-.++.. ...+.++.+ |+...... .. .+.+++ .++.+...-..
T Consensus 8 ~~ri~vl~SG~gsnl~all~~~~~-~~~~~~I~~--Vis~~~~a----------~~-----l~~A~~--~gIp~~~~~~~ 67 (215)
T 3kcq_A 8 ELRVGVLISGRGSNLEALAKAFST-EESSVVISC--VISNNAEA----------RG-----LLIAQS--YGIPTFVVKRK 67 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHHTCC-C-CSEEEEE--EEESCTTC----------TH-----HHHHHH--TTCCEEECCBT
T ss_pred CCEEEEEEECCcHHHHHHHHHHHc-CCCCcEEEE--EEeCCcch----------HH-----HHHHHH--cCCCEEEeCcc
Confidence 568999999998887777777632 122344444 44332111 11 234555 46555432111
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.-..+.+.+..++.++|++|+...++
T Consensus 68 ~~~~~~~~~~L~~~~~Dlivlagy~~ 93 (215)
T 3kcq_A 68 PLDIEHISTVLREHDVDLVCLAGFMS 93 (215)
T ss_dssp TBCHHHHHHHHHHTTCSEEEESSCCS
T ss_pred cCChHHHHHHHHHhCCCEEEEeCCce
Confidence 11247899999999999999998753
No 48
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=85.66 E-value=5.4 Score=28.65 Aligned_cols=86 Identities=6% Similarity=-0.008 Sum_probs=54.2
Q ss_pred CcEEEEEeCC-----ChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEE
Q 031262 2 RKRVMVVVDQ-----TSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVE 76 (162)
Q Consensus 2 ~~~Ilv~vD~-----S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 76 (162)
|+.|||-.+. .+.+.+++..|.+++...+.+++++-+=+.. ++.. ++.. . .|.+--
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~-------------~~~~---~~~~-~--~Gad~v 63 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGL-------------KEIE---KQIL-P--YGVDKL 63 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCC-------------TTTH---HHHG-G--GTCSEE
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCH-------------HHHH---HHHH-h--cCCCEE
Confidence 6778888874 5678999999999988778888877654321 1111 1111 1 233322
Q ss_pred EEEEe-----cCc---hhHHHHHHHhcCCCEEEEccCC
Q 031262 77 ALVIQ-----GPK---LGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 77 ~~v~~-----g~~---~~~I~~~a~~~~~dliVmG~~~ 106 (162)
..+.. .++ ...|.+.+++.++|+|++|+..
T Consensus 64 ~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 64 HVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp EEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred EEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 23321 112 5678888888889999998864
No 49
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=85.57 E-value=10 Score=30.14 Aligned_cols=87 Identities=8% Similarity=0.022 Sum_probs=58.1
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCe-EEEEEE
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVE-VEALVI 80 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~v~ 80 (162)
+++|++++.+-.+|.-++.|+.+. +.+++.+|+..... ++ .+.+++.|.++ ++. ..+.-.
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd~g~~------------~e-~e~a~~~A~~l--Gi~~~~vvd~ 65 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLANIGQK------------ED-FEEARKKALKL--GAKKVFIEDV 65 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEESSCC------------CC-HHHHHHHHHHH--TCSEEEEEEC
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEECCcH------------HH-HHHHHHHHHHh--CCCEEEEEeC
Confidence 468999999999999999888763 67899999875431 11 24455555553 332 222100
Q ss_pred ------------------------ecCc------hhHHHHHHHhcCCCEEEEccCCC
Q 031262 81 ------------------------QGPK------LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 81 ------------------------~g~~------~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.|.. ...+.++|++.++|.|+.|+++.
T Consensus 66 ~~ef~~~~~~~~i~~~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~~ 122 (413)
T 2nz2_A 66 SREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGK 122 (413)
T ss_dssp HHHHHHHTHHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTT
T ss_pred hHHHHHHHHHHHHHhCcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcCc
Confidence 0111 35677889999999999999974
No 50
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=85.41 E-value=1 Score=34.18 Aligned_cols=105 Identities=12% Similarity=0.036 Sum_probs=68.8
Q ss_pred hHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHh
Q 031262 15 SKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRK 94 (162)
Q Consensus 15 s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~ 94 (162)
..=++-.|..+...++++|.+.-|++... ..++..+.+.++.+...-+.+.. ++. .+...|+..+
T Consensus 178 g~LmlllAylL~~nW~A~I~L~~vV~de~----------a~~~a~~~l~~Lv~~~Ri~a~~~--vv~-~~F~~il~~s-- 242 (294)
T 3g40_A 178 MDLALLIAYKLKSNWKASLSFMTFAPTAI----------QAQAAENFLQSLAELARIPNVKM--QVL-RENPIKSSKL-- 242 (294)
T ss_dssp THHHHHHHHHHHHHHTCEEEEEEECSSHH----------HHHHHHHHHHHHHHHHTCCSCEE--EEE-SSCTTTSSSC--
T ss_pred hhHHHHHHHHHhhCcCCeEEEEEecCCHH----------HHHHHHHHHHHHHHHhcCCceEE--Eec-CchHHHHhhC--
Confidence 34455555555556799999999987542 45666677777777654344443 234 6655555555
Q ss_pred cCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCCCC
Q 031262 95 LEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSKGM 145 (162)
Q Consensus 95 ~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~~~ 145 (162)
-++||+++|-.....+.. . .+.+..+.-..+.++....+.
T Consensus 243 ~~ADL~flGl~~~~df~~------~-----~~~~~~~~ssc~f~~dsg~e~ 282 (294)
T 3g40_A 243 PFASLHIFSLDPNPDLDL------A-----RHLMEKAGSSCIFALDSGEEN 282 (294)
T ss_dssp CCCSEEEEECCSSCCHHH------H-----HHHHHHHTSEEEEEECCSCCC
T ss_pred cCCCEEEEcCCCCCcHHH------H-----HHHHHhcCCeEEEEecCchhH
Confidence 479999999977665553 2 667777777778887755433
No 51
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=85.39 E-value=0.9 Score=31.97 Aligned_cols=112 Identities=6% Similarity=-0.018 Sum_probs=65.7
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI 80 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~ 80 (162)
|++||++++.+|-.+..+.+..-.+.+ .+.+++++-.-.-.... .+ +. ++ .. .+. + .-
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T~~A~~fi---~~-----~~----l~----~l-~~~-~---~d 58 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELKQ-HFDEVNILFSPSSKNFI---NT-----DV----LK----LF-CDN-L---YD 58 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTT-TSSCEEEEECGGGGGTS---CG-----GG----GG----GT-SSC-E---EC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEchhHHHHH---HH-----HH----HH----HH-hCC-c---cc
Confidence 899999999999999999888887754 47777766532211111 00 00 11 11 111 1 11
Q ss_pred ecC--chhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 81 QGP--KLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 81 ~g~--~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
..+ +... .+.++ .+|++|+.--..+.+-++-.|-.. +.+..++...++|+++++
T Consensus 59 ~~~~~~~~h-i~l~~--~aD~~vIaPaTantlAKiA~GiaD--nllt~~~la~~~pvvlaP 114 (181)
T 1g63_A 59 EIKDPLLNH-INIVE--NHEYILVLPASANTINKIANGICD--NLLTTVCLTGYQKLFIFP 114 (181)
T ss_dssp TTTCTTCCH-HHHHH--TCSEEEEEEECHHHHHHHHTTCCC--SHHHHHHHHTGGGEEEEE
T ss_pred ccCCCCCcc-ccccc--cCCEEEEecCCHHHHHHHHccccC--cHHHHHHHHcCCCEEEEe
Confidence 111 1111 22233 679999987766666666666444 233455566899999998
No 52
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=85.00 E-value=6.5 Score=31.28 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=63.3
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccC-CCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTN-KGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI 80 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~-~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~ 80 (162)
..+|+|++.|..+|.-++..+.++... .+.++.++|+...... ...+-.+.++++|+++ ++++.+.-.
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~---------~s~~~~~~v~~~~~~l--gi~~~v~~~ 81 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSA---------NADAWVTHCENVCQQW--QVPLVVERV 81 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCS---------SHHHHHHHHHHHHHHT--TCCEEEECC
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCc---------ccHHHHHHHHHHHHHc--CCcEEEEEe
Confidence 468999999999999988888877665 6789999999644321 2344466788888884 555543322
Q ss_pred e----cCchh---------HHHHHHHhcCCCEEEEccCCCCccc
Q 031262 81 Q----GPKLG---------TVMSQVRKLEVSVLVLGQKKHSAFI 111 (162)
Q Consensus 81 ~----g~~~~---------~I~~~a~~~~~dliVmG~~~~~~~~ 111 (162)
. |...+ .+.+.++ +++.|+.|+|.....+
T Consensus 82 ~~~~~~~~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~dD~aE 123 (433)
T 1ni5_A 82 QLAQEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHLDDQCE 123 (433)
T ss_dssp CCCCSSSTTTTHHHHHHHHHHHHTCC--TTEEEECCCCHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHh--hCCeEEeeccchHHHH
Confidence 2 21112 2222232 4899999998654333
No 53
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=84.95 E-value=11 Score=28.58 Aligned_cols=121 Identities=11% Similarity=0.002 Sum_probs=74.5
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCcccc-chHHHHHHHHhHHHhCCCCeEEEEEEe-
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSAC-CPYLANSLGSLCKACKPEVEVEALVIQ- 81 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~v~~- 81 (162)
+|||++.........+++|..+. .+..-++++++.+..... . .+++ +.+++..++ .++...+.++.
T Consensus 22 ~iLV~sg~p~~~~~li~la~~lt-~~~G~ltv~~i~p~~~~~--------~l~~ql-~~l~~~l~~--r~v~a~~~vi~a 89 (294)
T 3g40_A 22 NLLVPVEDPRELMGTFDFLRDIT-YPKGSVKLLGLAGNTDKE--------NLLSQL-PSISEGFQE--EGVFSSWTIIDT 89 (294)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH-TTTCEEEEEECC---CTT--------CHHHHH-HHHHHHHHH--TTCEEEEEEC--
T ss_pred cEEEecCCchhhhhHHHHHHHhc-cCceeEEEEEEccCCCcc--------HHHHHH-HHHHHHHHh--CCceeEEEEEec
Confidence 58999977668888999998876 466789999997554321 1 3333 666666665 67877766654
Q ss_pred cCchhHHHHHHHhc-----CCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 82 GPKLGTVMSQVRKL-----EVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 82 g~~~~~I~~~a~~~-----~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
.++.+++...++.+ .++.|+||......-..-+ .... . -+.+....|++.+....
T Consensus 90 ~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~~y-~~~i-----~-~~~~~~~nVlil~~~~~ 149 (294)
T 3g40_A 90 AEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEI-REII-----R-KASMYRMGVLLFSKHPQ 149 (294)
T ss_dssp ---CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHHHH-HHHH-----H-HHHHTTCEEEEEECCTT
T ss_pred CChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhHHH-HHHH-----H-HHHHhCceEEEEecCCc
Confidence 56778888777755 4688899886543221111 1111 1 23356899999986443
No 54
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=84.36 E-value=6.7 Score=28.87 Aligned_cols=91 Identities=10% Similarity=0.040 Sum_probs=59.9
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCC----eEEEE
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEV----EVEAL 78 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~ 78 (162)
.+++|++.+..+|.-.+..+.+.... +.++.++|+.... ...+..+.++++++++ ++ ++.+.
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~-----------~~~et~~~v~~~~~~~--gl~~~~~l~v~ 107 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLH-----------HFPQTLTLKNEIEKKY--YQPKNQTIHVY 107 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSC-----------BCHHHHHHHHHHHHHH--TGGGTCCCEEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCC-----------CCHHHHHHHHHHHHHh--CCCCCCCeEEE
Confidence 36899999999999888888876644 4567888875433 1256677788888875 44 44433
Q ss_pred EEe------------cC-c-------------hhHHHHHHHhcCCCEEEEccCCC
Q 031262 79 VIQ------------GP-K-------------LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 79 v~~------------g~-~-------------~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
... |. . .+-+.+.+++++++.++.|.+..
T Consensus 108 ~~~~~~~~~~~~~~~G~~~~~~~~~~cc~~~K~~pl~~~l~~~g~~~~~tG~R~d 162 (261)
T 2oq2_A 108 KPDGCESEADFASKYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKS 162 (261)
T ss_dssp CSTTCSSHHHHHHHHCTTHHHHCHHHHHHHHTHHHHHHHHHHTTCSEEECCCCGG
T ss_pred ecCCccCHHHHHHHhCCCccccChHHHHHHHhHHHHHHHHHHcCCCEEEEecccc
Confidence 221 11 0 01233457788899999999854
No 55
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=84.08 E-value=8.8 Score=26.87 Aligned_cols=89 Identities=11% Similarity=0.132 Sum_probs=55.2
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEec
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQG 82 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g 82 (162)
++|+|++.+-.+|.-++.++.+. +.++..+|+...... ..-.+.++++++.+ +++..+.-...
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~~~~~-----------~~e~~~a~~~a~~l--gi~~~~~~~~~ 66 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHYNQRH-----------SQEVEVAKSIAEKL--GVKNHLLDMSL 66 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESSCTT-----------CHHHHHHHHHHHTT--CCCEEEEECGG
T ss_pred CCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeCCCCC-----------HHHHHHHHHHHHHh--CCCeEEEeChH
Confidence 68999999999999888877664 367888888754321 11244556666653 33333221111
Q ss_pred ---------------------C-c----------h-hHHHHHHHhcCCCEEEEccCCCC
Q 031262 83 ---------------------P-K----------L-GTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 83 ---------------------~-~----------~-~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
+ + . ..+.+++++++++.|+.|.+...
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd 125 (219)
T 3bl5_A 67 LNQLAPNALTRNDIEIEVKDGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCETD 125 (219)
T ss_dssp GGGGSTGGGC--------------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC--
T ss_pred HhhhcccccccccccccccccCCCCceeechHHHHHHHHHHHHHHcCCCEEEEeccccc
Confidence 0 0 1 23357788999999999998643
No 56
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=82.93 E-value=11 Score=27.06 Aligned_cols=86 Identities=20% Similarity=0.171 Sum_probs=54.3
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
|+||.|-+.++.....++-.+.+. ...+.++.++-...+. ....+.+++ .|+.+...-..
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~-~~l~~eI~~Visn~~~-----------------a~v~~~A~~--~gIp~~~~~~~ 61 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKA-GQLPCEVALLITDKPG-----------------AKVVERVKV--HEIPVCALDPK 61 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHT-TCCSSEEEEEEESCSS-----------------SHHHHHHHT--TTCCEEECCGG
T ss_pred CCEEEEEEeCCchHHHHHHHHHHc-CCCCcEEEEEEECCCC-----------------cHHHHHHHH--cCCCEEEeChh
Confidence 678999999988888888887753 2345676665442111 134455555 46555332111
Q ss_pred c--Cc---hhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 G--PK---LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 g--~~---~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
. +. .+.+.+..++.++|++|+...++
T Consensus 62 ~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~ 92 (211)
T 3p9x_A 62 TYPSKEAYEIEVVQQLKEKQIDFVVLAGYMR 92 (211)
T ss_dssp GSSSHHHHHHHHHHHHHHTTCCEEEESSCCS
T ss_pred hcCchhhhHHHHHHHHHhcCCCEEEEeCchh
Confidence 1 11 36788999999999999988754
No 57
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=82.91 E-value=15 Score=29.79 Aligned_cols=87 Identities=14% Similarity=0.052 Sum_probs=56.5
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
.+++++++.+-.+|.-++..+.+. +.+++.+|+...... .+-.+.++++++++ ++++.+.-..
T Consensus 209 ~~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd~g~~~-----------~~e~~~v~~~~~~l--gi~~~vv~~~ 271 (503)
T 2ywb_A 209 KDRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVDHGLLR-----------LGEREEVEGALRAL--GVNLLVVDAK 271 (503)
T ss_dssp TSEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEECSCSC-----------TTHHHHHHHHHHHT--TCCEEEEECH
T ss_pred CccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEeCCCCC-----------hHHHHHHHHHHHHh--CCCEEEEECc
Confidence 368999999999998888777664 688999998643321 11234566666663 4555433221
Q ss_pred --------c--Cch-----------hHHHHHHHhc-CCCEEEEccC
Q 031262 82 --------G--PKL-----------GTVMSQVRKL-EVSVLVLGQK 105 (162)
Q Consensus 82 --------g--~~~-----------~~I~~~a~~~-~~dliVmG~~ 105 (162)
| ++. +.+.++|++. +++.|+.|++
T Consensus 272 ~~f~~~l~g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~ 317 (503)
T 2ywb_A 272 ERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTL 317 (503)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCC
T ss_pred HHHHHhhcCCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 1 221 1344567787 8999999996
No 58
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=82.33 E-value=7.3 Score=28.90 Aligned_cols=80 Identities=10% Similarity=0.068 Sum_probs=49.6
Q ss_pred CChhhHHHHHHHHHhccCCCC--EEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe-----cC
Q 031262 11 QTSHSKHAMMWALTHVTNKGD--LLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ-----GP 83 (162)
Q Consensus 11 ~S~~s~~al~~A~~~a~~~~~--~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~-----g~ 83 (162)
.++.+.+|+..|.++..+.+. +++++.+=++ ..+ +.+++... .|.+--+++.. .+
T Consensus 35 lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~------------~~~---~~lr~ala---~GaD~vi~v~d~~~~~~~ 96 (264)
T 1o97_C 35 LNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPD------------RVD---ESLRKCLA---KGADRAVRVWDDAAEGSD 96 (264)
T ss_dssp ECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCG------------GGH---HHHHHHHH---TTCSEEEEECCGGGTTCC
T ss_pred cCHHHHHHHHHHHHHHHhcCCCceEEEEEeCch------------hHH---HHHHHHHh---cCCCEEEEEcCcccccCC
Confidence 456788999999998765555 8888776321 112 22333322 24443333322 12
Q ss_pred c---hhHHHHHHHhcCCCEEEEccCCCC
Q 031262 84 K---LGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 84 ~---~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
+ +..|...+++.++|+|++|....+
T Consensus 97 ~~~~a~~La~~i~~~~~dlVl~G~~s~d 124 (264)
T 1o97_C 97 AIVVGRILTEVIKKEAPDMVFAGVQSSD 124 (264)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESCCTT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 2 557778888889999999998643
No 59
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=81.68 E-value=17 Score=28.57 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=28.7
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeC
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVP 40 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~ 40 (162)
..++++++.|..+|.-++.++.+ .|.++..+|+..
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~ 221 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHS 221 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEEC
T ss_pred CCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeC
Confidence 46899999999999888887765 378899999864
No 60
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=80.86 E-value=9.7 Score=28.03 Aligned_cols=78 Identities=10% Similarity=0.130 Sum_probs=48.6
Q ss_pred ChhhHHHHHHHHHhccCCCC--EEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE-e-----c-
Q 031262 12 TSHSKHAMMWALTHVTNKGD--LLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI-Q-----G- 82 (162)
Q Consensus 12 S~~s~~al~~A~~~a~~~~~--~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~-~-----g- 82 (162)
++.+.+|+..|.++... +. +++++.+=++. .+ +.+++.... |.+--+++. + +
T Consensus 36 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~------------a~---~~lr~ala~---GaD~vi~v~~d~~~~~~~ 96 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ------------AA---ETLRTALAM---GADRAILVVAADDVQQDI 96 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG------------GH---HHHHHHHHH---TCSEEEEEECCSSTTCCC
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh------------HH---HHHHHHHhc---CCCEEEEEecChhhcccC
Confidence 56688999999998765 65 88888764321 12 223333222 333333332 1 2
Q ss_pred Cc---hhHHHHHHHhcCCCEEEEccCCCC
Q 031262 83 PK---LGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 83 ~~---~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
++ +..|...+++.++|+|++|....+
T Consensus 97 ~~~~~a~~La~~i~~~~~dlVl~G~~s~d 125 (252)
T 1efp_B 97 EPLAVAKILAAVARAEGTELIIAGKQAID 125 (252)
T ss_dssp CHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 22 567778888888999999998743
No 61
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=80.42 E-value=2.4 Score=26.60 Aligned_cols=55 Identities=11% Similarity=0.051 Sum_probs=33.7
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCC-cccccccccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHS-AFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~-~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
.+.|.+++++++++.||+|-.-.. +-..-.. -...++++.+-.. ++||..+..+.
T Consensus 40 ~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~--~~~~~f~~~L~~~-~lpV~~~DERl 95 (98)
T 1iv0_A 40 VEALLDFVRREGLGKLVVGLPLRTDLKESAQA--GKVLPLVEALRAR-GVEVELWDERF 95 (98)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCCCCSSSCCCS--STTHHHHHHHHHT-TCEEEEECCSC
T ss_pred HHHHHHHHHHcCCCEEEEeeccCCCCCcCHHH--HHHHHHHHHHhcC-CCCEEEECCCC
Confidence 788999999999999999953210 0000000 0001233666666 89999987653
No 62
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=80.22 E-value=10 Score=29.87 Aligned_cols=87 Identities=6% Similarity=0.032 Sum_probs=57.4
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCC-eEEEEEEe
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEV-EVEALVIQ 81 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~v~~ 81 (162)
++|++++.+-.+|.-++.|+.+.. +.+++.+|+..... +-.+.++++|.++ ++ +..+.-..
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~---g~~V~av~vd~g~~-------------~e~e~a~~~A~~l--Gi~~~~vvd~~ 62 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETY---RAEVIAFTADIGQG-------------EEVEEAREKALRT--GASKAIALDLK 62 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH---TCEEEEEEEESSCS-------------SCHHHHHHHHHHH--TCSEEEEEECH
T ss_pred CcEEEEEeChHHHHHHHHHHHHhh---CCcEEEEEEeCCCH-------------HHHHHHHHHHHHh--CCCeEEEEeCc
Confidence 479999999999999999987642 67899999875431 0133445555553 33 22221111
Q ss_pred ------------------------cCc------hhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 ------------------------GPK------LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 ------------------------g~~------~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
|.+ ...+.++|++.++|.|+.|+++.
T Consensus 63 ~ef~~~~~~~~i~~~~~~e~~y~~g~~~~R~~~~~~L~~~A~~~G~~~IatG~~~d 118 (400)
T 1kor_A 63 EEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGK 118 (400)
T ss_dssp HHHHHHTHHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHHHhhHHHHHcCCccccccccCCccchHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 110 34688899999999999999874
No 63
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=80.18 E-value=12 Score=27.56 Aligned_cols=78 Identities=10% Similarity=0.050 Sum_probs=48.5
Q ss_pred ChhhHHHHHHHHHhccCCCC--EEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE-e-----c-
Q 031262 12 TSHSKHAMMWALTHVTNKGD--LLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI-Q-----G- 82 (162)
Q Consensus 12 S~~s~~al~~A~~~a~~~~~--~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~-~-----g- 82 (162)
++.+.+|+..|.++... +. +++++.+=++. ..+.+++.... |.+--+++. + +
T Consensus 39 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~---------------a~~~lr~ala~---GaD~vi~v~~d~~~~~~~ 99 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ---------------CQETIRTALAM---GADRGIHVEVPPAEAERL 99 (255)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT---------------HHHHHHHHHHH---TCSEEEEEECCHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh---------------HHHHHHHHHhc---CCCEEEEEecChhhcccC
Confidence 35578999999998765 55 88888765321 12233333222 333333333 1 2
Q ss_pred Cc---hhHHHHHHHhcCCCEEEEccCCCC
Q 031262 83 PK---LGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 83 ~~---~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
++ +..|...+++.++|+|++|....+
T Consensus 100 ~~~~~A~~La~~i~~~~~dlVl~G~~s~d 128 (255)
T 1efv_B 100 GPLQVARVLAKLAEKEKVDLVLLGKQAID 128 (255)
T ss_dssp CHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccC
Confidence 22 567778888888999999998754
No 64
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=79.91 E-value=18 Score=28.14 Aligned_cols=96 Identities=9% Similarity=0.067 Sum_probs=59.2
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
.++|+|++.+-.+|.-++..+.+ .+.+++.+|+........ .+. -...+-.+.++++|+.+ +++..+.-..
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~~-~~~--c~~~~d~~~a~~va~~l--GIp~~vv~~~ 79 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKE----QGYDVIGIFMKNWDDTDE-NGV--CTATEDYKDVVAVADQI--GIPYYSVNFE 79 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECCCCCC-------CHHHHHHHHHHHHHHHH--TCCEEEEECH
T ss_pred CCeEEEEEeCHHHHHHHHHHHHH----cCCcEEEEEEECCCcccc-ccc--CCCHHHHHHHHHHHHHh--CCcEEEEeCh
Confidence 35899999999999887777654 367899998864322100 000 01123345667777774 4444332211
Q ss_pred -----------------cC------------chhHHHHHHHhcCCCEEEEccCC
Q 031262 82 -----------------GP------------KLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 82 -----------------g~------------~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
|. ....+.++|++.++|.|+.|++.
T Consensus 80 ~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a 133 (376)
T 2hma_A 80 KEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYA 133 (376)
T ss_dssp HHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSE
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcch
Confidence 10 13567788999999999999864
No 65
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=79.25 E-value=12 Score=28.34 Aligned_cols=93 Identities=10% Similarity=0.066 Sum_probs=60.9
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccC------------------CCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHH
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTN------------------KGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGS 64 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~------------------~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (162)
.+|+|++.|.++|.-.+..+.+.+.. .+.++.++|+.... ...+..+++++
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~-----------~fpet~~fv~~ 122 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEE-----------TFPTLENFVLE 122 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTT-----------CCHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCC-----------CCHHHHHHHHH
Confidence 47999999999998888877765311 13567888875432 23677888888
Q ss_pred hHHHhCCCCeEEEEEEe----cCchhHHHHHHHhc-CCCEEEEccCCCC
Q 031262 65 LCKACKPEVEVEALVIQ----GPKLGTVMSQVRKL-EVSVLVLGQKKHS 108 (162)
Q Consensus 65 ~~~~~~~~v~~~~~v~~----g~~~~~I~~~a~~~-~~dliVmG~~~~~ 108 (162)
.++++ ++++.+.-.. ....+.+.++.+.. ..+.+++|.+...
T Consensus 123 ~~~~y--gl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 123 TSERY--CLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp HHHHT--TEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred HHHHc--CCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 88884 5444322111 12356666777663 5789999998654
No 66
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=78.80 E-value=3.1 Score=29.02 Aligned_cols=114 Identities=7% Similarity=-0.035 Sum_probs=66.9
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI 80 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~ 80 (162)
|.++|++++.+|-.+..+.++.-.+. +.|.+++++-.-.-. .+ ...+ .++.+ .+ ++....
T Consensus 4 m~k~IllgvTGs~aa~k~~~ll~~L~-~~g~~V~vv~T~~A~-~f--------i~~~---~l~~l-----~~-~v~~~~- 63 (175)
T 3qjg_A 4 MGENVLICLCGSVNSINISHYIIELK-SKFDEVNVIASTNGR-KF--------INGE---ILKQF-----CD-NYYDEF- 63 (175)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHT-TTCSEEEEEECTGGG-GG--------SCHH---HHHHH-----CS-CEECTT-
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHH-HCCCEEEEEECcCHH-HH--------hhHH---HHHHh-----cC-CEEecC-
Confidence 67899999999999988888877664 457777665522111 11 0011 12222 12 121111
Q ss_pred ecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe
Q 031262 81 QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR 139 (162)
Q Consensus 81 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~ 139 (162)
+ ++....++.++ .+|++|+.--..+.+-++-.|-.. +.+..++...++|+++++
T Consensus 64 ~-~~~~~hi~l~~--~aD~~vVaPaTanTlakiA~GiaD--nLlt~~~la~~~pvvl~P 117 (175)
T 3qjg_A 64 E-DPFLNHVDIAN--KHDKIIILPATSNTINKIANGICD--NLLLTICHTAFEKLSIFP 117 (175)
T ss_dssp T-CTTCCHHHHHH--TCSEEEEEEECHHHHHHHHTTCCC--SHHHHHHHTCGGGEEEEE
T ss_pred C-CCccccccccc--hhCEEEEeeCCHHHHHHHHccccC--CHHHHHHHHcCCCEEEEe
Confidence 1 12233455555 679999987666666666666444 233556677799999998
No 67
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=78.57 E-value=5.5 Score=32.61 Aligned_cols=89 Identities=18% Similarity=0.066 Sum_probs=55.5
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe-
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ- 81 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~- 81 (162)
+++++++.+-.+|.-++.++.+. .+.+++.+|+..... ...+..+..+.+|+. -+++..+.-..
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~G~~v~av~vd~g~~----------~~~e~~~~~~~~a~~--lgi~~~vv~~~~ 295 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---IGDQLVCVLVDTGLL----------RLNEVDEVLNVFQKH--LGAKVICVDAKD 295 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---HGGGEEEEEECCSCS----------CTTHHHHHHHHHTTS--SCCEEEEECCHH
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---hCCeEEEEEeccCCC----------ChhHHHHHHHHHHHH--cCCcEEEEeChH
Confidence 68999999999998888777664 256799999864332 123444444446665 34444322111
Q ss_pred ---------cCchh-----------HHHHHHHhcCCCEEEEccCC
Q 031262 82 ---------GPKLG-----------TVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 82 ---------g~~~~-----------~I~~~a~~~~~dliVmG~~~ 106 (162)
.++.. .+.++|++.+++.|+.|++.
T Consensus 296 ~~~~~l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~ 340 (527)
T 3tqi_A 296 RFMKALKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIY 340 (527)
T ss_dssp HHHSSSSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCCH
T ss_pred HHHHhhcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEccccC
Confidence 12211 13466888899999999954
No 68
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=78.48 E-value=4.6 Score=33.21 Aligned_cols=97 Identities=11% Similarity=0.140 Sum_probs=60.3
Q ss_pred EEEe--CCChhhHHHHHHHHHhccC--CCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhC-CCCeEEEEEE
Q 031262 6 MVVV--DQTSHSKHAMMWALTHVTN--KGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACK-PEVEVEALVI 80 (162)
Q Consensus 6 lv~v--D~S~~s~~al~~A~~~a~~--~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~v~ 80 (162)
|+=+ |.--....||..|++.+.. .+.++..+.++++..... .........=+.+.++++.+++. .|. ...+.
T Consensus 32 l~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~-~~~~~~r~~Fl~~sL~~L~~~L~~~G~--~L~v~ 108 (543)
T 2wq7_A 32 VHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDW-MQVGANRWRFLQQTLEDLDNQLRKLNS--RLFVV 108 (543)
T ss_dssp EEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGC-TTSCHHHHHHHHHHHHHHHHHHHHTTC--CCEEE
T ss_pred EEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCC--eEEEE
Confidence 4444 5555667788888886643 456788999987643211 11111222334455555544431 343 34446
Q ss_pred ecCchhHHHHHHHhcCCCEEEEccC
Q 031262 81 QGPKLGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 81 ~g~~~~~I~~~a~~~~~dliVmG~~ 105 (162)
.|++.+.|.+.+++.+++-|+.-..
T Consensus 109 ~g~~~~~l~~l~~~~~~~~v~~~~~ 133 (543)
T 2wq7_A 109 RGKPAEVFPRIFKSWRVEMLTFETD 133 (543)
T ss_dssp ESCHHHHHHHHHHHTTEEEEEEECC
T ss_pred eCCHHHHHHHHHHHcCCCEEEEecC
Confidence 7999999999999999998887644
No 69
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=77.22 E-value=15 Score=27.69 Aligned_cols=90 Identities=13% Similarity=0.094 Sum_probs=54.6
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHH-hHHHhCCCCeEEEEEE
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGS-LCKACKPEVEVEALVI 80 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~v~ 80 (162)
.++|++++.|..+|.-++..+.+.. |.++..+|+....... .+.. .+++ +++. -+++..+.-.
T Consensus 20 ~~kvlvalSGGvDSsvla~ll~~~~---g~~v~av~vd~g~~~~----------~e~~-~~~~~~a~~--lgi~~~vv~~ 83 (308)
T 2dpl_A 20 DSKAIIALSGGVDSSTAAVLAHKAI---GDRLHAVFVNTGFLRK----------GEPE-FVVKTFRDE--FGMNLHYVDA 83 (308)
T ss_dssp TSCEEEECCSSHHHHHHHHHHHHHH---GGGEEEEEEECSCCCT----------THHH-HHHHHHTTT--TCCEEEEEEC
T ss_pred CCCEEEEEeChHHHHHHHHHHHHhh---CCCEEEEEEcCCCCCh----------HHHH-HHHHHHHHH--cCCcEEEEEC
Confidence 3689999999999988887776642 4678888886443211 1222 2333 3333 3455443322
Q ss_pred e--------c--Cch-----------hHHHHHHHhcCCCEEEEccCCC
Q 031262 81 Q--------G--PKL-----------GTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 81 ~--------g--~~~-----------~~I~~~a~~~~~dliVmG~~~~ 107 (162)
. | ++. ..+.+.|++.+++.|+.|++..
T Consensus 84 ~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~d 131 (308)
T 2dpl_A 84 QDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAP 131 (308)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC
T ss_pred CHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCCc
Confidence 1 1 221 2344678889999999998754
No 70
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=75.73 E-value=19 Score=25.68 Aligned_cols=86 Identities=16% Similarity=0.161 Sum_probs=47.3
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
|+||++-+.++.....++-.++... ..+.++ +-|+...... ...+.+++ .++.+...-..
T Consensus 1 m~rI~vl~SG~g~~~~~~l~~l~~~-~~~~~i--~~Vvs~~~~~---------------~~~~~A~~--~gIp~~~~~~~ 60 (216)
T 2ywr_A 1 MLKIGVLVSGRGSNLQAIIDAIESG-KVNASI--ELVISDNPKA---------------YAIERCKK--HNVECKVIQRK 60 (216)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHTT-SSCEEE--EEEEESCTTC---------------HHHHHHHH--HTCCEEECCGG
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHhC-CCCCeE--EEEEeCCCCh---------------HHHHHHHH--cCCCEEEeCcc
Confidence 4689999888876555444444321 122344 4444332111 12445555 35555321111
Q ss_pred c-Cc----hhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 G-PK----LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 g-~~----~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
. .. .+.+.+..++.++|++|+...++
T Consensus 61 ~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~ 91 (216)
T 2ywr_A 61 EFPSKKEFEERMALELKKKGVELVVLAGFMR 91 (216)
T ss_dssp GSSSHHHHHHHHHHHHHHTTCCEEEESSCCS
T ss_pred cccchhhhhHHHHHHHHhcCCCEEEEeCchh
Confidence 1 11 36788999999999999988753
No 71
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=74.74 E-value=2.7 Score=34.55 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=57.7
Q ss_pred CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCC---eEEEEEEecCchh
Q 031262 10 DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEV---EVEALVIQGPKLG 86 (162)
Q Consensus 10 D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~v~~g~~~~ 86 (162)
|..-....||..|++.+. .+.+|..++++++..... .........=+.+.+.++.+++. .. .....+..|++.+
T Consensus 13 DLRl~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~-~~~~~~r~~Fl~~sL~~L~~~L~-~~~~~G~~L~v~~G~~~~ 89 (538)
T 3tvs_A 13 GLRLHDNPALLAALADKD-QGIALIPVFIFDGESAGT-KNVGYNRMRFLLDSLQDIDDQLQ-AATDGRGRLLVFEGEPAY 89 (538)
T ss_dssp CCCSSSCHHHHTTTGGGT-TTCBCCEEEEECSSSSCS-TTCCHHHHHHHHHHHHHHHHHGG-GSCSSSSCCEEEESCHHH
T ss_pred CcchhhhHHHHHHHHhCC-CCCCEEEEEecChhhhcc-CCCCHHHHHHHHHHHHHHHHHHH-HhhcCCCeEEEEeCCHHH
Confidence 444455667887776653 445788999987643221 11112223344455666665542 12 3445666899999
Q ss_pred HHHHHHHhcCCCEEEEcc
Q 031262 87 TVMSQVRKLEVSVLVLGQ 104 (162)
Q Consensus 87 ~I~~~a~~~~~dliVmG~ 104 (162)
.|.+.+++.+++-|+.-.
T Consensus 90 vl~~L~~~~~a~~V~~n~ 107 (538)
T 3tvs_A 90 IFRRLHEQVRLHRICIEQ 107 (538)
T ss_dssp HHHHHHHHHCEEEECEEC
T ss_pred HHHHHHHHcCCCEEEEcc
Confidence 999999999999887644
No 72
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=74.17 E-value=31 Score=27.42 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=29.9
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCC
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPP 41 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~ 41 (162)
|.++|+|++.+--+|--++.|+.+ .|.+++.+++.-.
T Consensus 13 ~~~KVVVA~SGGlDSSv~a~~Lke----~G~eViavt~d~G 49 (421)
T 1vl2_A 13 MKEKVVLAYSGGLDTSVILKWLCE----KGFDVIAYVANVG 49 (421)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEESS
T ss_pred ccCCEEEEeCCcHHHHHHHHHHHH----CCCeEEEEEEEcC
Confidence 788999999999999999888865 2778888888643
No 73
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=73.15 E-value=4.2 Score=32.89 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=57.8
Q ss_pred EEEEEe--CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCC----CCCCccccchHHHHHHHHhHHHhC-CCCeEE
Q 031262 4 RVMVVV--DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNT----SHHDSSACCPYLANSLGSLCKACK-PEVEVE 76 (162)
Q Consensus 4 ~Ilv~v--D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 76 (162)
.+|+=+ |.--....||..|++. +.++..+.++++..... ..........=+.+.++++.+++. .|. .
T Consensus 7 ~~l~WfrrDLRl~DN~aL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~--~ 80 (489)
T 1np7_A 7 TVLVWFRNDLRLHDHEPLHRALKS----GLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGN--K 80 (489)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHT----TSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTC--C
T ss_pred cEEEEeCCCCCcchHHHHHHHHhc----CCCEEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHHHHHHHCCC--c
Confidence 344444 5555666788888753 45788888887642210 011111222334455555554432 353 4
Q ss_pred EEEEecCchhHHHHHHHhcCCCEEEEccC
Q 031262 77 ALVIQGPKLGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 77 ~~v~~g~~~~~I~~~a~~~~~dliVmG~~ 105 (162)
..+..|++.+.|.+.+++.+++-|+.-..
T Consensus 81 L~v~~g~~~~~l~~l~~~~~~~~V~~~~~ 109 (489)
T 1np7_A 81 LLVTTGLPEQVIPQIAKQINAKTIYYHRE 109 (489)
T ss_dssp EEEEESCHHHHHHHHHHHTTEEEEEEECC
T ss_pred EEEEECCHHHHHHHHHHHcCCCEEEEecc
Confidence 45567999999999999999988877644
No 74
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=72.80 E-value=19 Score=24.37 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=50.2
Q ss_pred CCcEEEEEeCCChhh---HHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEE
Q 031262 1 MRKRVMVVVDQTSHS---KHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEA 77 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s---~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 77 (162)
||+..+++-.|.+-. ...++.|.+++ +++++. +..+... .+ .-..++-.+.++..+.. .+++.+
T Consensus 1 Mm~i~i~~GsFDPiH~GHl~ii~~A~~~~----D~viv~-v~~~~~K----~~-~~~~~eR~~ml~~a~~~-~~~v~v-- 67 (157)
T 3nv7_A 1 MQKVGIYPGTFDPVTNGHIDIIHRSSELF----EKLIVA-VAHSSAK----NP-MFSLDERLKMIQLATKS-FKNVEC-- 67 (157)
T ss_dssp --CEEEEEECCTTCCHHHHHHHHHHHTTS----SEEEEE-EECCGGG----CC-SSCHHHHHHHHHHHHTT-STTEEE--
T ss_pred CCEEEEEEEEcCCCCHHHHHHHHHHHHhC----CceEEE-EccCCCC----CC-CCCHHHHHHHHHHHhcC-CCcEEE--
Confidence 788888888887643 44566666654 566554 2222111 01 01223333444443332 244333
Q ss_pred EEEecCchhHHHHHHHhcCCCEEEEccCCCCcc
Q 031262 78 LVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAF 110 (162)
Q Consensus 78 ~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~ 110 (162)
...+ +..++++++.++|.+|.|-+.-+.+
T Consensus 68 ~~~~----~l~~~~~~~~~~~~ivrG~r~~~D~ 96 (157)
T 3nv7_A 68 VAFE----GLLAYLAKEYHCKVLVRGLRVVSDF 96 (157)
T ss_dssp EEEC----SCHHHHHHHTTCCCBCCCCSCCCCH
T ss_pred EecC----chHHHHHHHcCCCEEEECCcccchh
Confidence 2222 2467899999999999997765544
No 75
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=72.08 E-value=6.3 Score=27.76 Aligned_cols=121 Identities=7% Similarity=-0.023 Sum_probs=64.1
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHH---hH-HHhCCCCeEEE
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGS---LC-KACKPEVEVEA 77 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~v~~~~ 77 (162)
|++|++++.+|-.+..+.+..-.+.+ .+.+++++-. +...+++.. +. +.......-..
T Consensus 1 mk~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T-----------------~~A~~~i~~e~~~~~~~l~~~l~~~~ 62 (189)
T 2ejb_A 1 MQKIALCITGASGVIYGIKLLQVLEE-LDFSVDLVIS-----------------RNAKVVLKEEHSLTFEEVLKGLKNVR 62 (189)
T ss_dssp CCEEEEEECSSTTHHHHHHHHHHHHH-TTCEEEEEEC-----------------HHHHHHHHHC-------CCCCCSSEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEC-----------------hhHHHHhhHHhCCCHHHHHHHhCCCe
Confidence 48999999999888888888877754 4777776642 112222222 00 00000010111
Q ss_pred EEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhC---CceEEEEecCC
Q 031262 78 LVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKA---DCLTVGVRKQS 142 (162)
Q Consensus 78 ~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~---~~pVlvv~~~~ 142 (162)
....++..+.|.--.-...+|++|+.--..+.+.++-.|-.. +.+...+..+ .+|+++++...
T Consensus 63 v~~~~~~~~hi~~~s~~~~aD~mvIaPaTanTlAkiA~GiaD--nLlt~~a~~~lk~~~plvl~Pa~m 128 (189)
T 2ejb_A 63 IHEENDFTSPLASGSRLVHYRGVYVVPCSTNTLSCIANGINK--NLIHRVGEVALKERVPLVLLVREA 128 (189)
T ss_dssp EEETTCTTSGGGCHHHHTTEEEEEEEEECHHHHHHHHHTCCS--SHHHHHHHHHHHHTCCEEEEECCS
T ss_pred EecCCCCcCCccccccccccCEEEEecCCHHHHHHHHcCcCC--cHHHHHHHHHccCCCcEEEEECCC
Confidence 111233333332221125689888887666666665555444 1223333333 79999998743
No 76
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=70.58 E-value=28 Score=25.27 Aligned_cols=88 Identities=6% Similarity=0.041 Sum_probs=56.1
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe-
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ- 81 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~- 81 (162)
.+|+|++.|..+|.-.+..+.+.. .++.++|+.... ...+..+.++++++.+ ++++.+.-..
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~v~vv~idtg~-----------~~~et~~~~~~~~~~~--gi~~~v~~~~~ 108 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGY-----------LFPETYRFIDELTDKL--KLNLKVYRATE 108 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TTCEEEECCCSC-----------BCHHHHHHHHHHHHHT--TCEEEECCCSS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CCCeEEEecCCC-----------CCHHHHHHHHHHHHHh--CCceEEEcCCC
Confidence 479999999999988888877764 346677764332 1245567788888874 5554433211
Q ss_pred ---------cCch----------------hHHHHHHHhcCCCEEEEccCCC
Q 031262 82 ---------GPKL----------------GTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 ---------g~~~----------------~~I~~~a~~~~~dliVmG~~~~ 107 (162)
|+.. +-+.+.+++.+++.++.|.+..
T Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~d 159 (252)
T 2o8v_A 109 SAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRRE 159 (252)
T ss_dssp CHHHHHHHTCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCST
T ss_pred CHHHHHHHcCCccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEecccc
Confidence 1100 1234556777889999998764
No 77
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=70.31 E-value=6.6 Score=25.01 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=40.0
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEE-ecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEE
Q 031262 58 LANSLGSLCKACKPEVEVEALVI-QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTV 136 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~-~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVl 136 (162)
+.+.+++.+++ .++++++.-. .+...+ +.+ ++|+|++|-.-+..+.++ +.......+||.
T Consensus 22 lv~km~~~a~~--~gi~v~i~a~~~~~~~~----~~~--~~DvvLLgPQV~y~~~~i-----------k~~~~~~~ipV~ 82 (108)
T 3nbm_A 22 LANAINEGANL--TEVRVIANSGAYGAHYD----IMG--VYDLIILAPQVRSYYREM-----------KVDAERLGIQIV 82 (108)
T ss_dssp HHHHHHHHHHH--HTCSEEEEEEETTSCTT----TGG--GCSEEEECGGGGGGHHHH-----------HHHHTTTTCEEE
T ss_pred HHHHHHHHHHH--CCCceEEEEcchHHHHh----hcc--CCCEEEEChHHHHHHHHH-----------HHHhhhcCCcEE
Confidence 55677777777 4666665432 233222 233 579999998754333321 445556689999
Q ss_pred EEecCC
Q 031262 137 GVRKQS 142 (162)
Q Consensus 137 vv~~~~ 142 (162)
++++..
T Consensus 83 vI~~~~ 88 (108)
T 3nbm_A 83 ATRGME 88 (108)
T ss_dssp ECCHHH
T ss_pred EeCHHH
Confidence 998753
No 78
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=70.27 E-value=6 Score=31.96 Aligned_cols=126 Identities=16% Similarity=0.146 Sum_probs=68.9
Q ss_pred CCcEEEEEe--CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhC-CCCeEEE
Q 031262 1 MRKRVMVVV--DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACK-PEVEVEA 77 (162)
Q Consensus 1 m~~~Ilv~v--D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~ 77 (162)
|.+.+|+=+ |.--....||..|++.. .++..+.++++..... .........=+.+.++++.+++. .|. ..
T Consensus 1 m~~~~l~WfrrDLRl~Dn~aL~~A~~~~----~~v~~vfi~dp~~~~~-~~~~~~r~~fl~~sL~~L~~~L~~~G~--~L 73 (484)
T 1owl_A 1 MAAPILFWHRRDLRLSDNIGLAAARAQS----AQLIGLFCLDPQILQS-ADMAPARVAYLQGCLQELQQRYQQAGS--RL 73 (484)
T ss_dssp --CCEEEEESSCCCSSSCHHHHHHHHHC----SCEEEEEEECHHHHTC-TTCCHHHHHHHHHHHHHHHHHHHHHTS--CE
T ss_pred CCccEEEEECCCCCcchhHHHHHHHhcC----CCEEEEEEEcchhhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCC--eE
Confidence 334444444 55545567888887642 2688888886532110 11111222334455555544431 343 34
Q ss_pred EEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 78 LVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 78 ~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
.+..|++.+.|.+.+++.+++-|+.-... .......-..+ ...+...+|++..+..
T Consensus 74 ~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~p~~~~rd~~v------~~~l~~~gi~~~~~~~ 129 (484)
T 1owl_A 74 LLLQGDPQHLIPQLAQQLQAEAVYWNQDI-EPYGRDRDGQV------AAALKTAGIRAVQLWD 129 (484)
T ss_dssp EEEESCHHHHHHHHHHHTTCSEEEEECCC-SHHHHHHHHHH------HHHHHHTTCEEEEECC
T ss_pred EEEeCCHHHHHHHHHHHcCCCEEEEeccC-ChhHHHHHHHH------HHHHHHcCcEEEEecC
Confidence 55679999999999999999998885432 22222111111 3344555788777654
No 79
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=69.54 E-value=5.6 Score=32.72 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=58.0
Q ss_pred cEEEEEe--CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCC-----C---CCccccchHHHHHHHHhHHHhC-C
Q 031262 3 KRVMVVV--DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTS-----H---HDSSACCPYLANSLGSLCKACK-P 71 (162)
Q Consensus 3 ~~Ilv~v--D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~-~ 71 (162)
+.+|+=+ |..-....||..|++ .+.+|..++++++...... . ........=+.+.++++.+++. .
T Consensus 5 ~~~lvWFRrDLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L~~~ 80 (537)
T 3fy4_A 5 SGSLIWFRKGLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKL 80 (537)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEeCCCcccchhHHHHHHHh----cCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444 555556678887775 3567999999865321100 0 1111222333445555544431 3
Q ss_pred CCeEEEEEEecCchhHHHHHHHhcCCCEEEEccC
Q 031262 72 EVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 72 ~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~ 105 (162)
| ....+..|++.+.|.+.+++.+++-|+.-..
T Consensus 81 G--~~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~ 112 (537)
T 3fy4_A 81 G--SRLLVFKGEPGEVLVRCLQEWKVKRLCFEYD 112 (537)
T ss_dssp T--CCCEEEESCHHHHHHHHHTTSCEEEEEECCC
T ss_pred C--CceEEEECCHHHHHHHHHHHcCCCEEEEecc
Confidence 4 4455567999999999999999999888654
No 80
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=69.31 E-value=8.7 Score=27.03 Aligned_cols=65 Identities=14% Similarity=0.130 Sum_probs=38.3
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHH-hcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCce
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVR-KLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCL 134 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~-~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~p 134 (162)
+++.+.+++.+.++ +.++ .+..++..+++...-+ +.++|.|| ++ |+++ ..+-++.+.|
T Consensus 14 ~~l~~~~~~i~~e~--~~~i--~i~~~~l~~~v~~a~~~~~~~dVII-SR-----------Ggta-----~~lr~~~~iP 72 (196)
T 2q5c_A 14 ENLLNLFPKLALEK--NFIP--ITKTASLTRASKIAFGLQDEVDAII-SR-----------GATS-----DYIKKSVSIP 72 (196)
T ss_dssp HHHHHHHHHHHHHH--TCEE--EEEECCHHHHHHHHHHHTTTCSEEE-EE-----------HHHH-----HHHHTTCSSC
T ss_pred HHHHHHHHHHHhhh--CCce--EEEECCHHHHHHHHHHhcCCCeEEE-EC-----------ChHH-----HHHHHhCCCC
Confidence 55666666766663 3334 3455665444332222 56788544 33 3455 6777778999
Q ss_pred EEEEecC
Q 031262 135 TVGVRKQ 141 (162)
Q Consensus 135 Vlvv~~~ 141 (162)
|+-++..
T Consensus 73 VV~I~~s 79 (196)
T 2q5c_A 73 SISIKVT 79 (196)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9998764
No 81
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=69.10 E-value=35 Score=25.81 Aligned_cols=84 Identities=13% Similarity=0.165 Sum_probs=51.8
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
++||+|-+.++.....++-++.+. ...+.++.++-. +... . ++++++ .++.+...-..
T Consensus 105 ~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~I~~Vis--n~~~----------~-------~~~A~~--~gIp~~~~~~~ 162 (302)
T 3o1l_A 105 KKRVVLMASRESHCLADLLHRWHS-DELDCDIACVIS--NHQD----------L-------RSMVEW--HDIPYYHVPVD 162 (302)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHT-TCSCSEEEEEEE--SSST----------T-------HHHHHT--TTCCEEECCCC
T ss_pred CcEEEEEEeCCchhHHHHHHHHHC-CCCCcEEEEEEE--CcHH----------H-------HHHHHH--cCCCEEEcCCC
Confidence 467888888887777887777653 233456555443 2211 1 223444 56665433211
Q ss_pred c-C-c--hhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 G-P-K--LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 g-~-~--~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
. + . .+.+.+..++.++|++|+...++
T Consensus 163 ~~~r~~~~~~~~~~l~~~~~DliVlagym~ 192 (302)
T 3o1l_A 163 PKDKEPAFAEVSRLVGHHQADVVVLARYMQ 192 (302)
T ss_dssp SSCCHHHHHHHHHHHHHTTCSEEEESSCCS
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEHhHhhh
Confidence 1 1 1 46789999999999999998763
No 82
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=68.94 E-value=4.7 Score=31.95 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=53.9
Q ss_pred CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhC-CCCeEEEEEEecCchhHH
Q 031262 10 DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACK-PEVEVEALVIQGPKLGTV 88 (162)
Q Consensus 10 D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~v~~g~~~~~I 88 (162)
|.--....||..|++. + ++..+.++++.... . ......=+.+.++++.+++. .|. ...+..|++.+.|
T Consensus 11 DlRl~Dn~aL~~A~~~----~-~v~~vfi~d~~~~~---~-~~~r~~fl~~sL~~l~~~L~~~g~--~l~~~~g~~~~~l 79 (420)
T 2j07_A 11 DLRLHDHPALLEALAR----G-PVVGLVVLDPNNLK---T-TPRRRAWFLENVRALREAYRARGG--ALWVLEGLPWEKV 79 (420)
T ss_dssp CCCSTTCHHHHHHHTT----S-CEEEEEEECHHHHS---S-CHHHHHHHHHHHHHHHHHHHHTTC--CEEEEESCHHHHH
T ss_pred CCCccccHHHHHHHhC----C-CEEEEEEECCcccc---C-CHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeCCHHHHH
Confidence 5544556688877753 2 68888888653221 1 22233334455555555432 353 4455679999999
Q ss_pred HHHHHhcCCCEEEEccC
Q 031262 89 MSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 89 ~~~a~~~~~dliVmG~~ 105 (162)
.+.+++.+++.|+.-..
T Consensus 80 ~~l~~~~~~~~v~~~~~ 96 (420)
T 2j07_A 80 PEAARRLKAKAVYALTS 96 (420)
T ss_dssp HHHHHHTTCSEEEEECC
T ss_pred HHHHHHcCCCEEEEecc
Confidence 99999999999888554
No 83
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=68.62 E-value=5.9 Score=32.39 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=57.5
Q ss_pred EEEEEe--CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCC-----CCCCccccchHHHHHHHHhHHHhC-CCCeE
Q 031262 4 RVMVVV--DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNT-----SHHDSSACCPYLANSLGSLCKACK-PEVEV 75 (162)
Q Consensus 4 ~Ilv~v--D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 75 (162)
.+|+=+ |.--....||..|++. +.++..+.++++..... ..........=+.+.++++.+++. .|.
T Consensus 41 ~~l~WfrrDLRl~DN~AL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~-- 114 (525)
T 2j4d_A 41 VTILWFRNDLRVLDNDALYKAWSS----SDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGL-- 114 (525)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHT----CSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred eEEEEeCCCcCcchhHHHHHHHhc----CCcEEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCC--
Confidence 344444 5554566788877763 34788888887642211 011112223334455555544432 343
Q ss_pred EEEEEecCchhHHHHHHHhcCCCEEEEccC
Q 031262 76 EALVIQGPKLGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 76 ~~~v~~g~~~~~I~~~a~~~~~dliVmG~~ 105 (162)
...+..|++.+.|.+.+++.+++-|+.-..
T Consensus 115 ~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~ 144 (525)
T 2j4d_A 115 NLLIRSGKPEEILPSLAKDFGARTVFAHKE 144 (525)
T ss_dssp CCEEEESCHHHHHHHHHHHHTCSEEEEECC
T ss_pred eEEEEeCCHHHHHHHHHHHcCCCEEEEecc
Confidence 344467999999999999999998887643
No 84
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=66.37 E-value=39 Score=25.45 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=51.2
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHh---CCCCeEEEE
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKAC---KPEVEVEAL 78 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~ 78 (162)
.+++++++.+ -+|.-|+-.+. +.|.+++.+|.. .. ++-.+..++.|..+ .....+...
T Consensus 179 ~~kvlvllSG-vDS~vaa~ll~----~~G~~v~~v~~~--~~------------~~~~~~a~~~a~~l~~~~~~~~i~~~ 239 (307)
T 1vbk_A 179 EGRMIGILHD-ELSALAIFLMM----KRGVEVIPVYIG--KD------------DKNLEKVRSLWNLLKRYSYGSKGFLV 239 (307)
T ss_dssp TCEEEEECSS-HHHHHHHHHHH----HBTCEEEEEEES--CS------------SHHHHHHHHHHHHHHTTCTTSCCCCE
T ss_pred CCcEEEEEeC-CcHHHHHHHHH----hCCCeEEEEEEE--EC------------HHHHHHHHHHHHHHhhhccCCCCcEE
Confidence 3589999999 88876655444 358899999986 11 01133344444433 111123333
Q ss_pred EEecCchhHHHHHHHhcCCCEEEEccCC
Q 031262 79 VIQGPKLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 79 v~~g~~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
++. ....+.++|++.++|.|+.|.+.
T Consensus 240 vv~--~~~~~~~~A~~~ga~~I~tG~~~ 265 (307)
T 1vbk_A 240 VAE--SFDRVLKLIRDFGVKGVIKGLRP 265 (307)
T ss_dssp EES--SHHHHHHHHHHHTCCEEECCCCG
T ss_pred EeC--CCHHHHHHHHHcCCCEEEECccc
Confidence 332 02334489999999999999873
No 85
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=65.77 E-value=9.8 Score=27.26 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=29.2
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEE
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHV 38 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv 38 (162)
+++|++++.||-.+..+.+..-.+.+ .|.+++++-.
T Consensus 4 ~k~IllgvTGaiaa~k~~~ll~~L~~-~g~eV~vv~T 39 (209)
T 3zqu_A 4 PERITLAMTGASGAQYGLRLLDCLVQ-EEREVHFLIS 39 (209)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEC
Confidence 68999999999999999888877654 4788776653
No 86
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=65.69 E-value=48 Score=27.04 Aligned_cols=85 Identities=14% Similarity=-0.010 Sum_probs=48.6
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
.|++++..| ...++.++..+. ..|.++..+..... .++..+.++++......+.. ..+..
T Consensus 364 GKrvaI~gd----~~~~~~la~fL~-elGm~vv~v~~~~~-------------~~~~~~~~~~~l~~~~~~~~--~~v~~ 423 (523)
T 3u7q_B 364 GKRFALWGD----PDFVMGLVKFLL-ELGCEPVHILCHNG-------------NKRWKKAVDAILAASPYGKN--ATVYI 423 (523)
T ss_dssp TCEEEEECS----HHHHHHHHHHHH-HTTCEEEEEEETTC-------------CHHHHHHHHHHHHTSGGGTT--CEEEE
T ss_pred CCEEEEECC----chHHHHHHHHHH-HcCCEEEEEEeCCC-------------CHHHHHHHHHHHhhccCCCC--cEEEE
Confidence 467777643 233344443333 46777665554211 13444555555543212222 23456
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCC
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
+.....+.+.+++.++|+++=|+++
T Consensus 424 ~~D~~~l~~~i~~~~pDLlig~s~~ 448 (523)
T 3u7q_B 424 GKDLWHLRSLVFTDKPDFMIGNSYG 448 (523)
T ss_dssp SCCHHHHHHHHHHTCCSEEEECTTH
T ss_pred CCCHHHHHHHHHhcCCCEEEECccH
Confidence 7677888899999999999988775
No 87
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=65.67 E-value=14 Score=28.43 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=42.3
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEecCc----hhHHHHHHHhcCCCEEE-EccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQGPK----LGTVMSQVRKLEVSVLV-LGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~g~~----~~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..+.+.+.... .++++...+..|++ .+.+.+.+++.++|+|| +|.- |+. +.++.+.-...
T Consensus 46 ~~~~v~~~L~~--~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGG-----------sv~--D~aK~iA~~~~ 110 (370)
T 1jq5_A 46 AGHTIVNELKK--GNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGG-----------KTL--DTAKAVADELD 110 (370)
T ss_dssp THHHHHHHHHT--TTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESH-----------HHH--HHHHHHHHHHT
T ss_pred HHHHHHHHHHH--cCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCh-----------HHH--HHHHHHHHhcC
Confidence 34445544443 46666444556765 45666778888999988 6542 222 22255555568
Q ss_pred ceEEEEecC
Q 031262 133 CLTVGVRKQ 141 (162)
Q Consensus 133 ~pVlvv~~~ 141 (162)
+|++.||-.
T Consensus 111 ~p~i~IPTT 119 (370)
T 1jq5_A 111 AYIVIVPTA 119 (370)
T ss_dssp CEEEEEESS
T ss_pred CCEEEeccc
Confidence 999999875
No 88
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=64.22 E-value=4.5 Score=27.01 Aligned_cols=54 Identities=4% Similarity=0.051 Sum_probs=35.1
Q ss_pred hhHHHHHHHhcCCCEEEEccC----CCCcccccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQK----KHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~----~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
.+.|.+++++++++.||+|-. |...-..... .++++.+-+..++||..+..+..
T Consensus 42 ~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~-----~~f~~~L~~~~~lpV~~~DERlT 99 (138)
T 1nu0_A 42 WNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARA-----RKFANRIHGRFGVEVKLHDERLS 99 (138)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHH-----HHHHHHHHHHHCCCEEEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHH-----HHHHHHHHHHhCCCEEEEcCCcC
Confidence 789999999999999999943 2111000001 12226666666899999977533
No 89
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=62.33 E-value=2.8 Score=28.39 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=34.4
Q ss_pred chhHHHHHHHhcCCCEEEEccCCCCcccccccccCCc-----chhHHHhhhhCCceEEEEecCC
Q 031262 84 KLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSS-----EEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 84 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~-----~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
..+.|.+.+++++++.||+|-.-.. -|+.+. ..++..+....++||..+..+.
T Consensus 43 ~~~~l~~li~~~~~~~ivVGlP~~~------nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~ 100 (150)
T 1vhx_A 43 GLSRLSELIKDYTIDKIVLGFPKNM------NGTVGPRGEASQTFAKVLETTYNVPVVLWDERL 100 (150)
T ss_dssp CHHHHHHHHTTSEEEEEEEECCCCB------TTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSS
T ss_pred HHHHHHHHHHHcCCCEEEEeeeecC------CcchhHHHHHHHHHHHHHHHhhCCCEEEecCCC
Confidence 4788999999999999999954110 111110 1222455556689999987653
No 90
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=62.05 E-value=44 Score=26.63 Aligned_cols=66 Identities=8% Similarity=0.025 Sum_probs=39.5
Q ss_pred HHHHhHHHhCCCCeEEEEEEec-Cc---hhHHHHHHHhcCC-CEEEEccCCCCcccccccccCCcchhHHHhhhhCCceE
Q 031262 61 SLGSLCKACKPEVEVEALVIQG-PK---LGTVMSQVRKLEV-SVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLT 135 (162)
Q Consensus 61 ~~~~~~~~~~~~v~~~~~v~~g-~~---~~~I~~~a~~~~~-dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pV 135 (162)
.....++. -|+.++..+..- .. ...+.+.+++.++ +.||.|+-+.+.+. .-+...+++||
T Consensus 283 ~a~~~l~~--~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lp-------------gvva~~t~~PV 347 (425)
T 2h31_A 283 KIKKACGN--FGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLG-------------PVMSGNTAYPV 347 (425)
T ss_dssp HHHHHHHH--TTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHH-------------HHHHHHCSSCE
T ss_pred HHHHHHHH--cCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchH-------------hHHhccCCCCE
Confidence 33344444 466677666532 22 3344444555667 57777776655555 33567788999
Q ss_pred EEEecC
Q 031262 136 VGVRKQ 141 (162)
Q Consensus 136 lvv~~~ 141 (162)
+-||..
T Consensus 348 IgvP~~ 353 (425)
T 2h31_A 348 ISCPPL 353 (425)
T ss_dssp EECCCC
T ss_pred EEeeCc
Confidence 999874
No 91
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=61.68 E-value=38 Score=23.60 Aligned_cols=36 Identities=14% Similarity=-0.013 Sum_probs=27.7
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCC
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPP 42 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~ 42 (162)
++|+|++.+..+|.-++.++.+ .+.++..+|+....
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~~ 42 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFGV 42 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECSS
T ss_pred CeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCCC
Confidence 5899999999999887766543 46678889986443
No 92
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=61.50 E-value=55 Score=25.44 Aligned_cols=97 Identities=11% Similarity=0.132 Sum_probs=58.7
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
.++|+|++.+-.+|.-++..+.+ .+-+++.+|+....... .+..-...+-.+.++++|+++ +++..+.-..
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~---~~~~~~s~~d~~~a~~va~~L--GIp~~vvd~~ 87 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQQ----QGYQVEGLFMKNWEEDD---GEEYCTAAADLADAQAVCDKL--GIELHTVNFA 87 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHHT----TCCEEEEEEEECCCCCS---HHHHHHHHHHHHHHHHHHHHH--TCCEEEEECH
T ss_pred CCEEEEEEEChHHHHHHHHHHHH----cCCeEEEEEEEcCcccc---ccCCCCCHHHHHHHHHHHHHc--CCcEEEEeCc
Confidence 46899999999888877766654 37889999986322110 000000123345667777774 4444433221
Q ss_pred -----------------cC---c---------hhHHHHHHHh-cCCCEEEEccCCC
Q 031262 82 -----------------GP---K---------LGTVMSQVRK-LEVSVLVLGQKKH 107 (162)
Q Consensus 82 -----------------g~---~---------~~~I~~~a~~-~~~dliVmG~~~~ 107 (162)
|. + ...+.++|++ .++|.|+.|.+..
T Consensus 88 ~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~ 143 (380)
T 2der_A 88 AEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVR 143 (380)
T ss_dssp HHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCE
T ss_pred HHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccc
Confidence 11 1 2456778888 9999999998644
No 93
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=61.25 E-value=41 Score=23.90 Aligned_cols=85 Identities=9% Similarity=0.118 Sum_probs=51.5
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEec
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQG 82 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g 82 (162)
+||.|-+.++.....++-.++.. ...+.++.++-. ..... .. .+.+++ .|+.+...-...
T Consensus 8 ~ri~vl~SG~gsnl~all~~~~~-~~l~~~I~~Vis--n~~~a----------~~-----l~~A~~--~gIp~~~~~~~~ 67 (209)
T 4ds3_A 8 NRVVIFISGGGSNMEALIRAAQA-PGFPAEIVAVFS--DKAEA----------GG-----LAKAEA--AGIATQVFKRKD 67 (209)
T ss_dssp EEEEEEESSCCHHHHHHHHHHTS-TTCSEEEEEEEE--SCTTC----------TH-----HHHHHH--TTCCEEECCGGG
T ss_pred ccEEEEEECCcHHHHHHHHHHHc-CCCCcEEEEEEE--CCccc----------HH-----HHHHHH--cCCCEEEeCccc
Confidence 47999999998888888777642 222345554433 22111 11 244555 466554322111
Q ss_pred --Cc---hhHHHHHHHhcCCCEEEEccCCC
Q 031262 83 --PK---LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 83 --~~---~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
+. .+.+.+..++.++|++|+...++
T Consensus 68 ~~~r~~~d~~~~~~l~~~~~Dliv~agy~~ 97 (209)
T 4ds3_A 68 FASKEAHEDAILAALDVLKPDIICLAGYMR 97 (209)
T ss_dssp SSSHHHHHHHHHHHHHHHCCSEEEESSCCS
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 11 36889999999999999988753
No 94
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=60.63 E-value=7.6 Score=31.03 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=64.8
Q ss_pred CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhC-CCCeEEEEEEecCchhHH
Q 031262 10 DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACK-PEVEVEALVIQGPKLGTV 88 (162)
Q Consensus 10 D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~v~~g~~~~~I 88 (162)
|..-....||..|++. +.+|..++++++...............=+.+.++++.+++. .| ....+..|++.+.|
T Consensus 10 DLRl~DN~aL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G--~~L~v~~g~~~~~l 83 (440)
T 2e0i_A 10 DLRLEDNTGLNYALSE----CDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDELRKKG--SRLNVFFGEAEKVV 83 (440)
T ss_dssp CCCSSSCHHHHHHHHH----SSEEEEEEEECHHHHSSCTTCCHHHHHHHHHHHHHHHHHHHTTT--CCCEEEESCHHHHH
T ss_pred CCccchhHHHHHHHhc----CCCEEEEEEeChhhhccCCcCCHHHHHHHHHHHHHHHHHHHHcC--CeEEEEECCHHHHH
Confidence 4444556688888763 56799999987532111000112223334455666555542 34 34445679999999
Q ss_pred HHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 89 MSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 89 ~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
.+.++ +++-|+.-... .......-..+ ...+...+|++..+..
T Consensus 84 ~~l~~--~~~~v~~~~~~-~~~~~~rd~~v------~~~l~~~gi~~~~~~~ 126 (440)
T 2e0i_A 84 SRFFN--KVDAIYVNEDY-TPFSISRDEKI------RKVCEENGIEFKAYED 126 (440)
T ss_dssp HHHCT--TCSEEEEECCC-SHHHHHHHHHH------HHHHHTTTCEEEEECC
T ss_pred HHHHc--CCCEEEEeccc-ChHHHHHHHHH------HHHHHHcCceEEEecC
Confidence 99999 88988875432 22222111111 3344555777776654
No 95
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=59.21 E-value=53 Score=24.52 Aligned_cols=84 Identities=11% Similarity=0.181 Sum_probs=52.3
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
++||.|-+.++.....++-++.+. ...+.++.++-. +... . +.++++ .|+.+...-..
T Consensus 90 ~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~Vis--n~~~----------~-------~~~A~~--~gIp~~~~~~~ 147 (286)
T 3n0v_A 90 RPKVVIMVSKADHCLNDLLYRQRI-GQLGMDVVAVVS--NHPD----------L-------EPLAHW--HKIPYYHFALD 147 (286)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHT-TSSCCEEEEEEE--SSST----------T-------HHHHHH--TTCCEEECCCB
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHC-CCCCcEEEEEEe--CcHH----------H-------HHHHHH--cCCCEEEeCCC
Confidence 467888888888888888877653 233456555443 2211 1 123445 46665533211
Q ss_pred c-Cc---hhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 G-PK---LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 g-~~---~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
. +. .+.+.+..++.++|++|+...++
T Consensus 148 ~~~r~~~~~~~~~~l~~~~~Dlivla~y~~ 177 (286)
T 3n0v_A 148 PKDKPGQERKVLQVIEETGAELVILARYMQ 177 (286)
T ss_dssp TTBHHHHHHHHHHHHHHHTCSEEEESSCCS
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEeccccc
Confidence 1 11 35789999999999999998753
No 96
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=58.50 E-value=25 Score=25.36 Aligned_cols=67 Identities=7% Similarity=0.015 Sum_probs=41.0
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHH---HHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQ---VRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~---a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
+++.+.+++.+.++ +...++.+.+++-.+++... .++.++|.|| ++ |+++ ..+-++.+
T Consensus 22 ~~L~~~~~~i~~e~--~~~~~I~vi~~~le~av~~a~~~~~~~~~dVII-SR-----------Ggta-----~~Lr~~~~ 82 (225)
T 2pju_A 22 TRLFELFRDISLEF--DHLANITPIQLGFEKAVTYIRKKLANERCDAII-AA-----------GSNG-----AYLKSRLS 82 (225)
T ss_dssp HHHHHHHHHHHTTT--TTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEE-EE-----------HHHH-----HHHHTTCS
T ss_pred HHHHHHHHHHHHhh--CCCceEEEecCcHHHHHHHHHHHHhcCCCeEEE-eC-----------ChHH-----HHHHhhCC
Confidence 56666667766663 33455666666655444432 2334588554 32 3455 77777789
Q ss_pred ceEEEEecC
Q 031262 133 CLTVGVRKQ 141 (162)
Q Consensus 133 ~pVlvv~~~ 141 (162)
.||+-++..
T Consensus 83 iPVV~I~vs 91 (225)
T 2pju_A 83 VPVILIKPS 91 (225)
T ss_dssp SCEEEECCC
T ss_pred CCEEEecCC
Confidence 999998764
No 97
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=57.79 E-value=64 Score=26.21 Aligned_cols=89 Identities=15% Similarity=0.084 Sum_probs=53.4
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
.+++++++.+--+|.-++.++.+.. +.+++.+|+....... .+..+..+.+++. -+++....-..
T Consensus 227 ~~~vvvalSGGvDSsv~a~ll~~a~---G~~v~av~v~~g~~~~----------~e~~~~~~~la~~--lgi~~~~v~~~ 291 (525)
T 1gpm_A 227 DDKVILGLSGGVDSSVTAMLLHRAI---GKNLTCVFVDNGLLRL----------NEAEQVLDMFGDH--FGLNIVHVPAE 291 (525)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHHH---GGGEEEEEEECSCSCT----------THHHHHHHHHTTT--TCCCEEEEECH
T ss_pred ccceEEEecCCCCHHHHHHHHHHHh---CCCEEEEEEeCCCCCc----------hHHHHHHHHHHHH--hCCcEEEEecc
Confidence 3689999999999988887776532 5678899987443211 1222222334544 34444322211
Q ss_pred ----------cCc-----------hhHHHHHHHhc-CCCEEEEccC
Q 031262 82 ----------GPK-----------LGTVMSQVRKL-EVSVLVLGQK 105 (162)
Q Consensus 82 ----------g~~-----------~~~I~~~a~~~-~~dliVmG~~ 105 (162)
+++ .+.+.++|++. +++.|+.|++
T Consensus 292 ~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~ 337 (525)
T 1gpm_A 292 DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTI 337 (525)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCC
T ss_pred HHHHHhhcCCCChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 122 12345668888 8999999995
No 98
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=57.72 E-value=57 Score=24.43 Aligned_cols=84 Identities=10% Similarity=0.131 Sum_probs=53.1
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
++||+|-+.++.....++-++.+. ...+.++.++-. +... . +.++++ .|+.+...-..
T Consensus 95 ~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~Vis--n~~~----------~-------~~~A~~--~gIp~~~~~~~ 152 (292)
T 3lou_A 95 RPKVLIMVSKLEHCLADLLFRWKM-GELKMDIVGIVS--NHPD----------F-------APLAAQ--HGLPFRHFPIT 152 (292)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHH-TSSCCEEEEEEE--SSST----------T-------HHHHHH--TTCCEEECCCC
T ss_pred CCEEEEEEcCCCcCHHHHHHHHHc-CCCCcEEEEEEe--CcHH----------H-------HHHHHH--cCCCEEEeCCC
Confidence 468899999888888888887754 234556555433 3211 1 123555 46665432211
Q ss_pred c-Cc---hhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 G-PK---LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 g-~~---~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
. +. .+.+.+..++.++|++|+...++
T Consensus 153 ~~~r~~~~~~~~~~l~~~~~Dlivla~y~~ 182 (292)
T 3lou_A 153 ADTKAQQEAQWLDVFETSGAELVILARYMQ 182 (292)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSEEEESSCCS
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEecCchh
Confidence 1 11 35789999999999999988763
No 99
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=56.23 E-value=53 Score=23.62 Aligned_cols=86 Identities=8% Similarity=0.041 Sum_probs=48.0
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
|+||++-+.++.....++-.++... ..+.++.++-. ..... ...+.+++ .++.+...-..
T Consensus 22 ~~rI~~l~SG~g~~~~~~l~~l~~~-~~~~~I~~Vvt--~~~~~---------------~~~~~A~~--~gIp~~~~~~~ 81 (229)
T 3auf_A 22 MIRIGVLISGSGTNLQAILDGCREG-RIPGRVAVVIS--DRADA---------------YGLERARR--AGVDALHMDPA 81 (229)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHTT-SSSEEEEEEEE--SSTTC---------------HHHHHHHH--TTCEEEECCGG
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHhC-CCCCeEEEEEc--CCCch---------------HHHHHHHH--cCCCEEEECcc
Confidence 4589999888876555554444321 12344444433 22111 12445555 56655422111
Q ss_pred c-Cc----hhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 G-PK----LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 g-~~----~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
. .. .+.+.+..++.++|++|+...++
T Consensus 82 ~~~~r~~~~~~~~~~l~~~~~Dliv~agy~~ 112 (229)
T 3auf_A 82 AYPSRTAFDAALAERLQAYGVDLVCLAGYMR 112 (229)
T ss_dssp GSSSHHHHHHHHHHHHHHTTCSEEEESSCCS
T ss_pred cccchhhccHHHHHHHHhcCCCEEEEcChhH
Confidence 1 11 36788999999999999988753
No 100
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=55.69 E-value=41 Score=25.20 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=50.0
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
++||.|-+.++.....++-++.+.- ..++++.+ |+.+.+. . +++++++ .|+.+...-..
T Consensus 89 ~~ri~vl~Sg~g~nl~~ll~~~~~g-~l~~~i~~--Visn~p~---------~-------~~~~A~~--~gIp~~~~~~~ 147 (288)
T 3obi_A 89 RRKVMLLVSQSDHCLADILYRWRVG-DLHMIPTA--IVSNHPR---------E-------TFSGFDF--GDIPFYHFPVN 147 (288)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHTT-SSCEEEEE--EEESSCG---------G-------GSCCTTT--TTCCEEECCCC
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHCC-CCCeEEEE--EEcCCCh---------h-------HHHHHHH--cCCCEEEeCCC
Confidence 5688888898888888888877532 23344444 4433200 0 1122333 45555432211
Q ss_pred c-Cc---hhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 G-PK---LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 g-~~---~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
. +. .+.+.+..++.++|++|+...++
T Consensus 148 ~~~r~~~~~~~~~~l~~~~~Dlivlagy~~ 177 (288)
T 3obi_A 148 KDTRRQQEAAITALIAQTHTDLVVLARYMQ 177 (288)
T ss_dssp TTTHHHHHHHHHHHHHHHTCCEEEESSCCS
T ss_pred cccHHHHHHHHHHHHHhcCCCEEEhhhhhh
Confidence 1 11 35788889999999999988753
No 101
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=54.88 E-value=54 Score=23.22 Aligned_cols=86 Identities=13% Similarity=0.103 Sum_probs=48.8
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
|+||.|-+.++.....++-.++.. ...+.++.++ +...... ...+.+++ .++.+...-..
T Consensus 3 m~ki~vl~sG~g~~~~~~l~~l~~-~~l~~~I~~V--it~~~~~---------------~v~~~A~~--~gIp~~~~~~~ 62 (212)
T 3av3_A 3 MKRLAVFASGSGTNFQAIVDAAKR-GDLPARVALL--VCDRPGA---------------KVIERAAR--ENVPAFVFSPK 62 (212)
T ss_dssp CEEEEEECCSSCHHHHHHHHHHHT-TCCCEEEEEE--EESSTTC---------------HHHHHHHH--TTCCEEECCGG
T ss_pred CcEEEEEEECCcHHHHHHHHHHHh-CCCCCeEEEE--EeCCCCc---------------HHHHHHHH--cCCCEEEeCcc
Confidence 468888888887665555444432 1124455444 3222111 34455555 46655432111
Q ss_pred c--Cc---hhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 G--PK---LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 g--~~---~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
. +. .+.+.+..++.++|++|+...++
T Consensus 63 ~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~~ 93 (212)
T 3av3_A 63 DYPSKAAFESEILRELKGRQIDWIALAGYMR 93 (212)
T ss_dssp GSSSHHHHHHHHHHHHHHTTCCEEEESSCCS
T ss_pred cccchhhhHHHHHHHHHhcCCCEEEEchhhh
Confidence 1 11 35788999999999999988653
No 102
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=54.14 E-value=87 Score=25.42 Aligned_cols=85 Identities=11% Similarity=-0.025 Sum_probs=49.5
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
.|++++..| +..++..+..+. ..|.++..+..... .++..+.++++.+....+. ...+..
T Consensus 360 Gkrv~i~gd----~~~~~~la~~L~-ElGm~vv~v~~~~~-------------~~~~~~~~~~ll~~~~~~~--~~~v~~ 419 (519)
T 1qgu_B 360 GKKFGLYGD----PDFVMGLTRFLL-ELGCEPTVILSHNA-------------NKRWQKAMNKMLDASPYGR--DSEVFI 419 (519)
T ss_dssp TCEEEEESC----HHHHHHHHHHHH-HTTCEEEEEEETTC-------------CHHHHHHHHHHHHHSTTCT--TCEEEE
T ss_pred CCEEEEECC----chHHHHHHHHHH-HCCCEEEEEEeCCC-------------CHHHHHHHHHHHHhcCCCC--CCEEEE
Confidence 467777653 344444444443 56777665554321 1344556666666532121 134456
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCC
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
+.....+.+.+++.++|+++=++++
T Consensus 420 ~~d~~~l~~~i~~~~pDLiig~~~~ 444 (519)
T 1qgu_B 420 NCDLWHFRSLMFTRQPDFMIGNSYG 444 (519)
T ss_dssp SCCHHHHHHHHHHHCCSEEEECGGG
T ss_pred CCCHHHHHHHHhhcCCCEEEECcch
Confidence 6667778888888899999866553
No 103
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=53.69 E-value=38 Score=21.11 Aligned_cols=66 Identities=11% Similarity=0.085 Sum_probs=35.6
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEE
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTV 136 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVl 136 (162)
-+.+.+++.+.+ .++++++....-. .+.++. .++|+|+.+..-...+.++ +......++||+
T Consensus 19 ll~~kl~~~~~~--~gi~~~i~~~~~~---~~~~~~--~~~D~Ii~t~~l~~~~~~~-----------~~~~~~~~~pv~ 80 (109)
T 2l2q_A 19 MLVQRIEKYAKS--KNINATIEAIAET---RLSEVV--DRFDVVLLAPQSRFNKKRL-----------EEITKPKGIPIE 80 (109)
T ss_dssp HHHHHHHHHHHH--HTCSEEEEEECST---THHHHT--TTCSEEEECSCCSSHHHHH-----------HHHHHHHTCCEE
T ss_pred HHHHHHHHHHHH--CCCCeEEEEecHH---HHHhhc--CCCCEEEECCccHHHHHHH-----------HHHhcccCCCEE
Confidence 344567777666 3555554332222 222333 4689999988643322211 223334578988
Q ss_pred EEec
Q 031262 137 GVRK 140 (162)
Q Consensus 137 vv~~ 140 (162)
++.+
T Consensus 81 ~I~~ 84 (109)
T 2l2q_A 81 IINT 84 (109)
T ss_dssp ECCH
T ss_pred EECh
Confidence 8876
No 104
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=53.29 E-value=24 Score=25.17 Aligned_cols=86 Identities=14% Similarity=0.002 Sum_probs=46.5
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
+.++.++.|++. -..+++++-++. ..+..+++-.+. +.. ..... ++++.+.+ ++..+-..+--
T Consensus 5 ~~~livAlD~~~-~~~a~~~~~~~~----~~~~~ikvg~~l--f~~------~G~~~---v~~l~~~~-p~~~iflDlKl 67 (221)
T 3exr_A 5 LPNLQVALDHSN-LKGAITAAVSVG----NEVDVIEAGTVC--LLQ------VGSEL---VEVLRSLF-PDKIIVADTKC 67 (221)
T ss_dssp CCEEEEEECCSS-HHHHHHHHHHHG----GGCSEEEECHHH--HHH------HCTHH---HHHHHHHC-TTSEEEEEEEE
T ss_pred CCCEEEEeCCCC-HHHHHHHHHhhC----CCceEEEECHHH--HHh------cCHHH---HHHHHHhC-CCCcEEEEEEe
Confidence 457999999984 466777776643 234455653221 100 11222 33333332 23333333333
Q ss_pred cCchhHHHHHHHhcCCCEEEEcc
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQ 104 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~ 104 (162)
.|....+.+.+.+.++|++.+=.
T Consensus 68 ~Dip~t~~~~~~~~Gad~vtVH~ 90 (221)
T 3exr_A 68 ADAGGTVAKNNAVRGADWMTCIC 90 (221)
T ss_dssp CSCHHHHHHHHHTTTCSEEEEET
T ss_pred eccHHHHHHHHHHcCCCEEEEec
Confidence 46666677778888899887733
No 105
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=52.97 E-value=58 Score=23.33 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=43.7
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEec--Cc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhh
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQG--PK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKK 130 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g--~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~ 130 (162)
..++.+.+++.+.+ .+.++.+.-..+ ++ ....++...+.++|-||+.......+... . +. +.
T Consensus 20 ~~~~~~g~~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~-----~-----~~-~~- 85 (304)
T 3o1i_D 20 WLSVNYGMVSEAEK--QGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHN-----L-----KS-WV- 85 (304)
T ss_dssp HHHHHHHHHHHHHH--HTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTT-----H-----HH-HT-
T ss_pred HHHHHHHHHHHHHH--cCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHH-----H-----HH-Hc-
Confidence 35666777777777 366665555444 43 33455666667899999886543322211 1 33 44
Q ss_pred CCceEEEEec
Q 031262 131 ADCLTVGVRK 140 (162)
Q Consensus 131 ~~~pVlvv~~ 140 (162)
.++||+.+..
T Consensus 86 ~~iPvV~~~~ 95 (304)
T 3o1i_D 86 GNTPVFATVN 95 (304)
T ss_dssp TTSCEEECSS
T ss_pred CCCCEEEecC
Confidence 7999999843
No 106
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=52.80 E-value=69 Score=23.89 Aligned_cols=81 Identities=10% Similarity=-0.104 Sum_probs=46.9
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCc
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
+..+.++...+.....+.+-.-+...+. .-.+.+.+++.++|-+++......... .-+.. .- +.|+..++.
T Consensus 58 Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~-~f-----~~va~a~~l 131 (300)
T 3eb2_A 58 QREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIES-YF-----RAIADAVEI 131 (300)
T ss_dssp HHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHH-HH-----HHHHHHCSS
T ss_pred HHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHH-HH-----HHHHHHCCC
Confidence 3333344444433344555544433333 444557888999999999876532211 11111 11 567888999
Q ss_pred eEEEEecCCC
Q 031262 134 LTVGVRKQSK 143 (162)
Q Consensus 134 pVlvv~~~~~ 143 (162)
||++..-+..
T Consensus 132 PiilYn~P~~ 141 (300)
T 3eb2_A 132 PVVIYTNPQF 141 (300)
T ss_dssp CEEEEECTTT
T ss_pred CEEEEECccc
Confidence 9999987665
No 107
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=52.73 E-value=58 Score=23.02 Aligned_cols=84 Identities=8% Similarity=0.093 Sum_probs=51.1
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe-
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ- 81 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~- 81 (162)
+||.|-+.++.....++-.+++. ...+.++.++-..++. . . ..+.+.+ .++.+...-..
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~-~~~~~~I~~Vvs~~~~--~----------~-----~~~~A~~--~gIp~~~~~~~~ 60 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTRE-PNSSAQIDIVISNKAA--V----------A-----GLDKAER--AGIPTRVINHKL 60 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHS-TTCSCEEEEEEESSTT--C----------H-----HHHHHHH--TTCCEEECCGGG
T ss_pred CeEEEEEECCchHHHHHHHHHhc-CCCCcEEEEEEeCCCC--h----------H-----HHHHHHH--cCCCEEEECccc
Confidence 47889999998888888776642 2234566555443221 1 1 1244555 46655422111
Q ss_pred -cCc---hhHHHHHHHhcCCCEEEEccCC
Q 031262 82 -GPK---LGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 82 -g~~---~~~I~~~a~~~~~dliVmG~~~ 106 (162)
.+. .+.+.+..++.++|++|+...+
T Consensus 61 ~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 89 (209)
T 1meo_A 61 YKNRVEFDSAIDLVLEEFSIDIVCLAGFM 89 (209)
T ss_dssp SSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred cCchhhhhHHHHHHHHhcCCCEEEEcchh
Confidence 111 3578889999999999998865
No 108
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=52.59 E-value=85 Score=24.88 Aligned_cols=98 Identities=10% Similarity=0.067 Sum_probs=58.0
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
.|++++..|. ..++.++..+. ..|.++..+..... .+...+.++++.+.. ++ ....+..
T Consensus 312 gkrv~i~~~~----~~~~~l~~~L~-elG~~vv~v~~~~~-------------~~~~~~~~~~ll~~~-~~--~~~~v~~ 370 (458)
T 1mio_B 312 GKKVALLGDP----DEIIALSKFII-ELGAIPKYVVTGTP-------------GMKFQKEIDAMLAEA-GI--EGSKVKV 370 (458)
T ss_dssp TCEEEEEECH----HHHHHHHHHHH-TTTCEEEEEEESSC-------------CHHHHHHHHHHHHTT-TC--CSCEEEE
T ss_pred CCEEEEEcCc----hHHHHHHHHHH-HCCCEEEEEEeCCC-------------CHHHHHHHHHHHHhc-CC--CCCEEEE
Confidence 4677777774 33344443333 56777666554321 134455566655552 11 2223445
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEE
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGV 138 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv 138 (162)
+.....+.+.+++.++|+++-|+++ .++.++..+|.+-+
T Consensus 371 ~~d~~~l~~~i~~~~pDl~ig~~~~------------------~~~a~k~gip~~~~ 409 (458)
T 1mio_B 371 EGDFFDVHQWIKNEGVDLLISNTYG------------------KFIAREENIPFVRF 409 (458)
T ss_dssp SCBHHHHHHHHHHSCCSEEEESGGG------------------HHHHHHHTCCEEEC
T ss_pred CCCHHHHHHHHHhcCCCEEEeCcch------------------HHHHHHcCCCEEEe
Confidence 6556678899999999999955542 56667777787765
No 109
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=52.14 E-value=26 Score=24.72 Aligned_cols=35 Identities=6% Similarity=-0.046 Sum_probs=27.9
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEE
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLH 37 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~h 37 (162)
+||++++.+|-.+..+.+..-.+.+..|.+++++-
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~ 35 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVM 35 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEE
Confidence 37999999999888888888877544378887665
No 110
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=51.63 E-value=63 Score=23.05 Aligned_cols=85 Identities=7% Similarity=0.029 Sum_probs=52.2
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
++||.|-+.++.....++-.+...- .+.++.++-. ..... .. .+.+++ .++.+...-..
T Consensus 5 ~~riavl~SG~Gsnl~all~~~~~~--~~~eI~~Vis--~~~~a----------~~-----~~~A~~--~gIp~~~~~~~ 63 (215)
T 3tqr_A 5 PLPIVVLISGNGTNLQAIIGAIQKG--LAIEIRAVIS--NRADA----------YG-----LKRAQQ--ADIPTHIIPHE 63 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHTT--CSEEEEEEEE--SCTTC----------HH-----HHHHHH--TTCCEEECCGG
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHcC--CCCEEEEEEe--CCcch----------HH-----HHHHHH--cCCCEEEeCcc
Confidence 4578999999988888888777532 3445554433 22111 11 244555 46655432111
Q ss_pred c--C---chhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 G--P---KLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 g--~---~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
. + ..+.+.+..++.++|++|+...++
T Consensus 64 ~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~ 94 (215)
T 3tqr_A 64 EFPSRTDFESTLQKTIDHYDPKLIVLAGFMR 94 (215)
T ss_dssp GSSSHHHHHHHHHHHHHTTCCSEEEESSCCS
T ss_pred ccCchhHhHHHHHHHHHhcCCCEEEEccchh
Confidence 1 1 146789999999999999988753
No 111
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=51.56 E-value=17 Score=25.86 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=26.8
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEE
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLH 37 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~h 37 (162)
.++|++++.+|-.+..+.++.-.+.+..+.++.++-
T Consensus 19 ~k~IllgvTGsiaa~k~~~lv~~L~~~~g~~V~vv~ 54 (206)
T 1qzu_A 19 KFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVT 54 (206)
T ss_dssp SEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEE
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 478999999999999998888777542576776654
No 112
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=51.32 E-value=61 Score=24.39 Aligned_cols=73 Identities=8% Similarity=-0.064 Sum_probs=42.4
Q ss_pred HHHHHhHHHhCCCCeEEEEEEecCchhH--HHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCceEE
Q 031262 60 NSLGSLCKACKPEVEVEALVIQGPKLGT--VMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADCLTV 136 (162)
Q Consensus 60 ~~~~~~~~~~~~~v~~~~~v~~g~~~~~--I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~pVl 136 (162)
+.++...+.....+.+-.-+.. +..++ +.+.|++.++|-+++-........ +-+.- .- +.|+..++.||+
T Consensus 69 ~vi~~~~~~~~grvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~-~f-----~~va~a~~lPii 141 (314)
T 3d0c_A 69 QVATRVTELVNGRATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVE-YY-----RNIIEALDAPSI 141 (314)
T ss_dssp HHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHH-HH-----HHHHHHSSSCEE
T ss_pred HHHHHHHHHhCCCCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHH-HH-----HHHHHhCCCCEE
Confidence 3333333333344555555544 54444 467788999999999876432211 11111 11 467788899999
Q ss_pred EEe
Q 031262 137 GVR 139 (162)
Q Consensus 137 vv~ 139 (162)
+..
T Consensus 142 lYn 144 (314)
T 3d0c_A 142 IYF 144 (314)
T ss_dssp EEE
T ss_pred EEe
Confidence 987
No 113
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=50.59 E-value=12 Score=26.48 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=26.6
Q ss_pred CCcEEEEEeCCChh------hHHHHHHHHHhccCC--CCEEEEEEEeCC
Q 031262 1 MRKRVMVVVDQTSH------SKHAMMWALTHVTNK--GDLLTLLHVVPP 41 (162)
Q Consensus 1 m~~~Ilv~vD~S~~------s~~al~~A~~~a~~~--~~~l~l~hv~~~ 41 (162)
||.+||+ +++|+. +...++++++.+... +.++.++...+.
T Consensus 3 mM~kiLi-I~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~ 50 (211)
T 3p0r_A 3 AMTKVLF-VKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKE 50 (211)
T ss_dssp -CCEEEE-EECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGS
T ss_pred ccCEEEE-EEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 5667665 455544 566778888777654 789998887653
No 114
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=50.50 E-value=56 Score=24.40 Aligned_cols=85 Identities=13% Similarity=0.149 Sum_probs=48.7
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
++||.|-+.++.....++-++.+. ...+.++.++-...+. . +++++++ .|+.+...-..
T Consensus 88 ~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~i~~Visn~~~------------a------~~~~A~~--~gIp~~~~~~~ 146 (287)
T 3nrb_A 88 RKKVVIMVSKFDHCLGDLLYRHRL-GELDMEVVGIISNHPR------------E------ALSVSLV--GDIPFHYLPVT 146 (287)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHH-TSSCCEEEEEEESSCG------------G------GCCCCCC--TTSCEEECCCC
T ss_pred CcEEEEEEeCCCcCHHHHHHHHHC-CCCCeEEEEEEeCChH------------H------HHHHHHH--cCCCEEEEecc
Confidence 467888888887778788777653 2334555544332211 0 1122322 45554432111
Q ss_pred c-C-c--hhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 G-P-K--LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 g-~-~--~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
. + . .+.+.+..++.++|++|+...++
T Consensus 147 ~~~r~~~~~~~~~~l~~~~~Dlivlagym~ 176 (287)
T 3nrb_A 147 PATKAAQESQIKNIVTQSQADLIVLARYMQ 176 (287)
T ss_dssp GGGHHHHHHHHHHHHHHHTCSEEEESSCCS
T ss_pred CcchhhHHHHHHHHHHHhCCCEEEhhhhhh
Confidence 1 1 1 35688888888999999887753
No 115
>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}
Probab=50.33 E-value=23 Score=26.04 Aligned_cols=95 Identities=9% Similarity=-0.007 Sum_probs=48.4
Q ss_pred cEEEEEeCCChhhHHH-HHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 3 KRVMVVVDQTSHSKHA-MMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~a-l~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
.++.|++|.+...... .+++++++...++.+..+=+--. .+. ....+..+.++++.+....+..+-..+--
T Consensus 14 ~~LcVgLD~~~~~~~~~~~~~~~lv~~l~~~v~~~Kvg~~--lf~------~~G~~g~~~l~~l~~~~~~g~~VflDlK~ 85 (255)
T 3qw3_A 14 SLLCVGLDPRAKTAAAAVEECKRLIEQTHEYAAAYKPNAA--FFE------FFGAEGWAALSEVIRAVPAGIPVVLDAKR 85 (255)
T ss_dssp CCEEEEECCCCSSHHHHHHHHHHHHHHHGGGCSEEEEBHH--HHH------TTTHHHHHHHHHHHHHSCTTCCBEEEEEE
T ss_pred CCEEEEeCCCchhcchHHHHHHHHHHHhCCcCcEEEEcHH--HHH------hcCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 4689999988643222 56666666554444333333211 110 11223234444444432245555555555
Q ss_pred cCchhHHHHHH----HhcCCCEEEEccC
Q 031262 82 GPKLGTVMSQV----RKLEVSVLVLGQK 105 (162)
Q Consensus 82 g~~~~~I~~~a----~~~~~dliVmG~~ 105 (162)
+|...+...++ ++.++|++.+-..
T Consensus 86 ~DI~nTv~~~a~~~~~~lg~d~vTvh~~ 113 (255)
T 3qw3_A 86 GDIADTADAYATSAFKHLNAHAITASPY 113 (255)
T ss_dssp CCCHHHHHHHHHHHHTTSCCSEEEECCT
T ss_pred CCcHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 77655553343 3467888887443
No 116
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=50.20 E-value=20 Score=22.31 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=24.9
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
++.+..+++.... .|..+.+.-......+.|.+.++++++.++|+--..
T Consensus 12 eetlrkfkdiikk--ngfkvrtvrspqelkdsieelvkkynativvvvvdd 60 (134)
T 2l69_A 12 EETLRKFKDIIKK--NGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDD 60 (134)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSS
T ss_pred HHHHHHHHHHHHh--cCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEcc
Confidence 4445555555555 444444332222235556666666666666555544
No 117
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=49.02 E-value=46 Score=26.91 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=64.6
Q ss_pred CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhC-CCCeEEEEEEe-cCchhH
Q 031262 10 DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACK-PEVEVEALVIQ-GPKLGT 87 (162)
Q Consensus 10 D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~v~~-g~~~~~ 87 (162)
|.--....||..|++. + ++..+.++++..... .........=+.+.++++.+++. .|.. ..+.. |++.+.
T Consensus 21 DLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~~-~~~~~~~~~fl~~sL~~L~~~L~~~G~~--L~v~~~g~~~~~ 92 (509)
T 1u3d_A 21 DLRVEDNPALAAAVRA----G-PVIALFVWAPEEEGH-YHPGRVSRWWLKNSLAQLDSSLRSLGTC--LITKRSTDSVAS 92 (509)
T ss_dssp CCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGTT-CCCCHHHHHHHHHHHHHHHHHHHHTTCC--EEEEECSCHHHH
T ss_pred CCccchhHHHHHHHhC----C-CEEEEEEECchhccc-CCcchHHHHHHHHHHHHHHHHHHHCCCe--EEEEeCCCHHHH
Confidence 5555566788888874 2 467788886542211 01111111124455555555432 4544 34444 688999
Q ss_pred HHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 88 VMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 88 I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
|.+.+++.+++-|+.-... .+.....-.. . ...+...+|++..+..
T Consensus 93 l~~l~~~~~~~~V~~~~~~-~p~~~~rd~~-v-----~~~l~~~gi~~~~~~~ 138 (509)
T 1u3d_A 93 LLDVVKSTGASQIFFNHLY-DPLSLVRDHR-A-----KDVLTAQGIAVRSFNA 138 (509)
T ss_dssp HHHHHHHHTCCEEEEECCC-SHHHHHHHHH-H-----HHHHHTTTCEEEEECC
T ss_pred HHHHHHHcCCCEEEEeccc-CHHHHHHHHH-H-----HHHHHHcCcEEEEECC
Confidence 9999999999998876532 2222111111 1 3344556788777654
No 118
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=48.26 E-value=6.8 Score=31.57 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=53.1
Q ss_pred CCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhC-CCCeEEEEEE--ecCchh
Q 031262 10 DQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACK-PEVEVEALVI--QGPKLG 86 (162)
Q Consensus 10 D~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~v~--~g~~~~ 86 (162)
|..-....||..|++. .. .+|..++++++..... .........=+.+.++++.+++. .|..+.+.-. .|++.+
T Consensus 10 DLRl~DN~aL~~A~~~--~~-~~v~~vfi~dp~~~~~-~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~~~~~g~~~~ 85 (471)
T 1dnp_A 10 DLRLHDNLALAAACRN--SS-ARVLALYIATPRQWAT-HNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVE 85 (471)
T ss_dssp CCCSTTCHHHHHHSSS--TT-SEEEEEEEECHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSHHHHHH
T ss_pred CCcccchHHHHHHHhC--CC-CCEEEEEEECchhhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEccCCCCHHH
Confidence 3343445677777753 12 3899999987532100 01111222334455555554432 4544433211 689999
Q ss_pred HHHHHHHhcCCCEEEEccC
Q 031262 87 TVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 87 ~I~~~a~~~~~dliVmG~~ 105 (162)
.|.+.+++.+++-|+.-..
T Consensus 86 ~l~~l~~~~~~~~v~~~~~ 104 (471)
T 1dnp_A 86 IVKQVCAENSVTHLFYNYQ 104 (471)
T ss_dssp HHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHcCCCEEEEecc
Confidence 9999999999999887543
No 119
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=47.97 E-value=51 Score=21.89 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=31.5
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecC-chhHHHHHHHhcCCCEEEEccCCCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGP-KLGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~-~~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
.+.+.+.+.+.+.. .+++++..-.... ..+.+..... ++|.||+|+....
T Consensus 18 T~~iA~~ia~~l~~--~g~~v~~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~ 68 (159)
T 3fni_A 18 SDRLAQAIINGITK--TGVGVDVVDLGAAVDLQELRELVG--RCTGLVIGMSPAA 68 (159)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEESSSCCCHHHHHHHHH--TEEEEEEECCBTT
T ss_pred HHHHHHHHHHHHHH--CCCeEEEEECcCcCCHHHHHHHHH--hCCEEEEEcCcCC
Confidence 46677777666655 4666654443333 4555665555 5699999997654
No 120
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=47.63 E-value=38 Score=24.51 Aligned_cols=66 Identities=11% Similarity=0.142 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCC----CCCCcEEEec--eeeceeee
Q 031262 87 TVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQS----KGMGGYIIST--RWQKNFWL 160 (162)
Q Consensus 87 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~----~~~~~~~~~~--~~~~~~~~ 160 (162)
..++.+.+.+.|.|.+|.+..-...+.+ ++++.+-+ .+.|+++.+... ..-.++++.+ ++-+.+|+
T Consensus 22 ~~~~~~~~~GtD~i~vGGs~gvt~~~~~-------~~v~~ik~-~~~Pvvlfp~~~~~v~~gaD~~l~pslln~~~~~~i 93 (228)
T 3vzx_A 22 EQLEILCESGTDAVIIGGSDGVTEDNVL-------RMMSKVRR-FLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWI 93 (228)
T ss_dssp THHHHHHTSSCSEEEECCCSCCCHHHHH-------HHHHHHTT-SSSCEEEECSCGGGCCSCCSEEEEEEETTBSSGGGT
T ss_pred HHHHHHHHcCCCEEEECCcCCCCHHHHH-------HHHHHhhc-cCCCEEEeCCCHHHccccCCEEEEeeecCCCCcchh
Confidence 4556667888999999996422222211 11144444 799999987742 1223666655 44566665
No 121
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=47.52 E-value=14 Score=27.85 Aligned_cols=68 Identities=9% Similarity=0.216 Sum_probs=40.4
Q ss_pred HHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEE-EecC-------CCCCCcEEEec--eeece
Q 031262 88 VMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVG-VRKQ-------SKGMGGYIIST--RWQKN 157 (162)
Q Consensus 88 I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlv-v~~~-------~~~~~~~~~~~--~~~~~ 157 (162)
+++.+.+.+.|.|++|+.+-+.|...+ . ++++.+-+..+.||++ .+|+ +..-..+++.+ ++-+.
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~~-~-----~~v~~ik~~~~lPvil~fPP~~g~~~~i~~~aDa~l~psvlNs~n~ 131 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESHM-E-----PYVAAVKAATPLPVVLHFPPRPGAGFPVVRGADALLLPALLGSGDD 131 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHHH-H-----HHHHHHHHHCSSCEEEECCCBTTTBSCCCTTCSEEEEEEETTBSSH
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHHH-H-----HHHHHHHHhCCCCEEEECCCCCCCccccccCCCEEEEEEEecCCCc
Confidence 566677888999999954444233221 1 2225555658999999 7721 11123566544 55666
Q ss_pred eeec
Q 031262 158 FWLL 161 (162)
Q Consensus 158 ~~~~ 161 (162)
+|+.
T Consensus 132 ~~i~ 135 (286)
T 3vk5_A 132 YFVW 135 (286)
T ss_dssp HHHT
T ss_pred cccc
Confidence 6653
No 122
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=47.22 E-value=20 Score=26.08 Aligned_cols=67 Identities=6% Similarity=0.095 Sum_probs=39.3
Q ss_pred EEEecCc----hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecC-CC---CCCcEE
Q 031262 78 LVIQGPK----LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ-SK---GMGGYI 149 (162)
Q Consensus 78 ~v~~g~~----~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~-~~---~~~~~~ 149 (162)
++..||| ...+++...+.++|+|.+|........+.+ +.++.+-+ .+.|+++..-. +. .-.|.+
T Consensus 11 ~it~gDP~~~~t~~~~~~l~~~GaD~IelG~S~g~t~~~~~-------~~v~~ir~-~~~Pivl~~y~~n~i~~gvDg~i 82 (234)
T 2f6u_A 11 HITKLDPDRTNTDEIIKAVADSGTDAVMISGTQNVTYEKAR-------TLIEKVSQ-YGLPIVVEPSDPSNVVYDVDYLF 82 (234)
T ss_dssp EEEEECTTSCCCHHHHHHHHTTTCSEEEECCCTTCCHHHHH-------HHHHHHTT-SCCCEEECCSSCCCCCCCSSEEE
T ss_pred EEEeeCCCccccHHHHHHHHHcCCCEEEECCCCCCCHHHHH-------HHHHHhcC-CCCCEEEecCCcchhhcCCCEEE
Confidence 3445666 355778888899999999974222222222 11134433 68999987665 21 123666
Q ss_pred Eec
Q 031262 150 IST 152 (162)
Q Consensus 150 ~~~ 152 (162)
+..
T Consensus 83 ipd 85 (234)
T 2f6u_A 83 VPT 85 (234)
T ss_dssp EEE
T ss_pred Ecc
Confidence 655
No 123
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=46.74 E-value=23 Score=24.91 Aligned_cols=115 Identities=8% Similarity=-0.026 Sum_probs=64.2
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
.++|++++.+|-.+..+.+..-.+. +.|.++.++-.- ...+++....-+...+. +......
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~-~~g~~V~vv~T~-----------------~A~~fi~~~~~~~l~~~-v~~~~~~ 68 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFK-SFFKEIRVVMTK-----------------TAEDLIPAHTVSYFCDH-VYSEHGE 68 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHT-TTSSEEEEEECH-----------------HHHHHSCHHHHGGGSSE-EECTTCS
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHH-HCCCEEEEEEch-----------------hHHHHHHHHHHHHhcCC-Eeccccc
Confidence 4789999999998888888877764 457777766421 11112111111100121 1111000
Q ss_pred -cCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 82 -GPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 82 -g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
+++... ++.++ .+|++|+.--..+.+-++-.|-.. +.+..++...++|+++++.
T Consensus 69 ~~~~~~h-i~l~~--~aD~~vIaPaTanTlAKiA~GiaD--nLlt~~a~a~~~pvvl~Pa 123 (194)
T 1p3y_1 69 NGKRHSH-VEIGR--WADIYCIIPATANILGQTANGVAM--NLVATTVLAHPHNTIFFPN 123 (194)
T ss_dssp SSCCCCH-HHHHH--HCSEEEEEEECHHHHHHHHTTCCS--SHHHHHHHHSSSCCEEEEC
T ss_pred cCCCcCc-ccccc--cCCEEEEeCCCHHHHHHHHhhccC--CHHHHHHHHcCCCEEEEEC
Confidence 011111 22233 579999987666666666666544 3335555668999999986
No 124
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=44.68 E-value=75 Score=23.57 Aligned_cols=51 Identities=4% Similarity=-0.038 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 87 TVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 87 ~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
.+.+.|++.++|-+++-........ .-+..- - +.|...++.||++..-+..
T Consensus 86 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~-f-----~~va~a~~lPiilYn~P~~ 137 (294)
T 2ehh_A 86 HLTAHAKEVGADGALVVVPYYNKPTQRGLYEH-F-----KTVAQEVDIPIIIYNIPSR 137 (294)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHH-H-----HHHHHHCCSCEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHH-H-----HHHHHhcCCCEEEEeCCcc
Confidence 3467788999999988876432111 111111 1 4677888999999876543
No 125
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=44.67 E-value=81 Score=23.97 Aligned_cols=78 Identities=4% Similarity=-0.090 Sum_probs=42.3
Q ss_pred HHHHHhHHHhCCCCeEEEEEEecCchhH--HHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCceEE
Q 031262 60 NSLGSLCKACKPEVEVEALVIQGPKLGT--VMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADCLTV 136 (162)
Q Consensus 60 ~~~~~~~~~~~~~v~~~~~v~~g~~~~~--I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~pVl 136 (162)
+.++...+.....+.+-.-+...+..++ +.+.|++.++|-+++-........ .-+..- - +.|+..++.||+
T Consensus 91 ~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~-f-----~~VA~a~~lPii 164 (332)
T 2r8w_A 91 RAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHH-F-----AAVAGATALPLA 164 (332)
T ss_dssp HHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHH-H-----HHHHHHCSSCEE
T ss_pred HHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHH-H-----HHHHHhcCCCEE
Confidence 3333333332234444433322233444 467788999999998876432211 111111 1 467788899999
Q ss_pred EEecCCC
Q 031262 137 GVRKQSK 143 (162)
Q Consensus 137 vv~~~~~ 143 (162)
+..-+..
T Consensus 165 lYn~P~~ 171 (332)
T 2r8w_A 165 IYNNPTT 171 (332)
T ss_dssp EECCHHH
T ss_pred EEeCccc
Confidence 8865543
No 126
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=44.01 E-value=56 Score=21.64 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=30.3
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
.+.+.+.+.+.... .+++++..-......+.+..... ++|.||+|+...+
T Consensus 14 T~~~A~~ia~~l~~--~g~~v~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~ 63 (161)
T 3hly_A 14 SDRLSQAIGRGLVK--TGVAVEMVDLRAVDPQELIEAVS--SARGIVLGTPPSQ 63 (161)
T ss_dssp HHHHHHHHHHHHHH--TTCCEEEEETTTCCHHHHHHHHH--HCSEEEEECCBSS
T ss_pred HHHHHHHHHHHHHh--CCCeEEEEECCCCCHHHHHHHHH--hCCEEEEEcCCcC
Confidence 46666666665555 46665544333334555555555 4699999997653
No 127
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=43.96 E-value=35 Score=27.22 Aligned_cols=58 Identities=14% Similarity=0.223 Sum_probs=34.1
Q ss_pred CCCeEEEEEEecCch----hHHHHHHHhcCCCEEE-EccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 71 PEVEVEALVIQGPKL----GTVMSQVRKLEVSVLV-LGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 71 ~~v~~~~~v~~g~~~----~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
.++++...+..|++. +.+.+.+++ ++|+|| +|. ||+. +.++.+.-...+|++.|+-..
T Consensus 117 ~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGG-----------GSvi--D~AK~iA~~~giP~I~IPTTA 179 (450)
T 1ta9_A 117 NGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGG-----------GKTM--DSAKYIAHSMNLPSIICPTTA 179 (450)
T ss_dssp TTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEES-----------HHHH--HHHHHHHHHTTCCEEEEESSC
T ss_pred CCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCC-----------cHHH--HHHHHHHHhcCCCEEEEeCCC
Confidence 466664445567652 333344445 788777 554 2222 333666666789999998853
No 128
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=43.81 E-value=32 Score=25.37 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=31.2
Q ss_pred HHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 89 MSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 89 ~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
++.++++++|++|+.+.... .. |. .-+...+...+.|++++...
T Consensus 57 ~~~~~~~~pDfvI~isPN~a-~P----GP----~~ARE~l~~~~iP~IvI~D~ 100 (283)
T 1qv9_A 57 LDIAEDFEPDFIVYGGPNPA-AP----GP----SKAREMLADSEYPAVIIGDA 100 (283)
T ss_dssp HHHHHHHCCSEEEEECSCTT-SH----HH----HHHHHHHHTSSSCEEEEEEG
T ss_pred hhhhhhcCCCEEEEECCCCC-CC----Cc----hHHHHHHHhCCCCEEEEcCC
Confidence 44558999999999886432 11 22 22378899999999999764
No 129
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=43.74 E-value=75 Score=21.66 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=50.1
Q ss_pred CCcEEEEEeCCChhh---HHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEE
Q 031262 1 MRKRVMVVVDQTSHS---KHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEA 77 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s---~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 77 (162)
||+..+++-.|.+.. ...++.|.+.+ ++++++=..++... + ....++-.+.++..++. .+++.+.
T Consensus 1 Mm~i~i~~GsFDPiH~GHl~i~~~a~~~~----D~viv~v~~~~~K~-----~-~~~~~~R~~ml~~a~~~-~~~v~v~- 68 (171)
T 3nd5_A 1 MRKIALFPGSFDPMTNGHLNLIERSAKLF----DEVIIGVFINTSKQ-----T-LFTPEEKKYLIEEATKE-MPNVRVI- 68 (171)
T ss_dssp CCCEEEEEECCTTCCHHHHHHHHHHHTTC----SEEEEEEEC------------CCCHHHHHHHHHHHHTT-CTTEEEE-
T ss_pred CCeEEEEEEEccccCHHHHHHHHHHHHHC----CCeEEEEecCCCCC-----C-CCCHHHHHHHHHHHHcc-CCCEEEe-
Confidence 888889998888754 34555555543 67665522222110 0 11223333444443332 2443331
Q ss_pred EEEecCchhHHHHHHHhcCCCEEEEccCCCCcc
Q 031262 78 LVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAF 110 (162)
Q Consensus 78 ~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~ 110 (162)
...+ .-.++++++.+++.+|+|.+....+
T Consensus 69 ~~~e----~~tvd~~~~l~~~~~i~G~~~~~d~ 97 (171)
T 3nd5_A 69 MQET----QLTVESAKSLGANFLIRGIRNVKDY 97 (171)
T ss_dssp EECS----SCHHHHHHHHTCCEEEEEECSHHHH
T ss_pred eCCC----CcHHHHHHHCCCCEEEECCCchhhh
Confidence 2223 2466888888999999997654433
No 130
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=43.59 E-value=80 Score=23.59 Aligned_cols=52 Identities=4% Similarity=-0.141 Sum_probs=32.5
Q ss_pred hHHHHHHHhcCCCEEEEccCCCCcc-cccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 86 GTVMSQVRKLEVSVLVLGQKKHSAF-INCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~~~~~~-~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
-.+.+.|++.++|-+++-....... .+-+.-- - +.|...++.||++..-+..
T Consensus 101 i~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~-f-----~~ia~a~~lPiilYn~P~~ 153 (304)
T 3cpr_A 101 VELAEAAASAGADGLLVVTPYYSKPSQEGLLAH-F-----GAIAAATEVPICLYDIPGR 153 (304)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHH-H-----HHHHHHCCSCEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHH-H-----HHHHHhcCCCEEEEeCccc
Confidence 3346778899999998887543211 1111111 1 4677888999999876543
No 131
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=43.33 E-value=1.1e+02 Score=23.33 Aligned_cols=94 Identities=13% Similarity=0.053 Sum_probs=53.7
Q ss_pred CEEEEEEEeCCCCCCCCCCCc------cccchHHHHHHHHhHHHhCCCCeEEEEEEecCchh------------------
Q 031262 31 DLLTLLHVVPPPKPNTSHHDS------SACCPYLANSLGSLCKACKPEVEVEALVIQGPKLG------------------ 86 (162)
Q Consensus 31 ~~l~l~hv~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~------------------ 86 (162)
.+|+++|.-+-+....+.... .--..++...++++.++ .++ ...+-.||..+
T Consensus 7 ~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~-~~n---~llld~GD~~qGs~~~~~~~~~~~~~g~~ 82 (339)
T 3jyf_A 7 VDLRIMETTDLHSNMMDFDYYKDAATEKFGLVRTASLIEQARAE-VKN---SVLVDNGDVIQGSPLGDYMAAKGLKEGDV 82 (339)
T ss_dssp EEEEEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHT-CSC---EEEEECSCCSSSSHHHHHHHHHCCCTTCC
T ss_pred eeEEEEEEeeCCCCcccccccCCCccccCCHHHHHHHHHHHHhh-CCC---EEEEECCCCCCCchhHHhhhhcccccccc
Confidence 579999998776543222110 11224455555555544 222 24444566421
Q ss_pred -HHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEE
Q 031262 87 -TVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGV 138 (162)
Q Consensus 87 -~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv 138 (162)
.+++..+..++|.+++|.|....-... ....+..+..|+|..
T Consensus 83 ~p~~~~mn~lg~D~~t~GNHEfd~G~~~----------l~~~~~~a~fp~l~a 125 (339)
T 3jyf_A 83 HPVYKAMNTLNYAVGNLGNHEFNYGLDF----------LHKALAGAKFPYVNA 125 (339)
T ss_dssp CHHHHHHTTSCCSEEECCGGGGTTCHHH----------HHHHHHTCSSCEECS
T ss_pred hHHHHHHHhcCCCEEecchhhhhccHHH----------HHHHHHhcCCceeee
Confidence 367778888999999999864311111 145667788888754
No 132
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=42.99 E-value=77 Score=23.63 Aligned_cols=51 Identities=4% Similarity=-0.095 Sum_probs=31.9
Q ss_pred hHHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 86 GTVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
-.+.+.|++.++|-+++-........ +-+.- .- +.|...++.||++..-+.
T Consensus 97 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~-~f-----~~va~a~~lPiilYn~P~ 148 (301)
T 1xky_A 97 IDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQ-HF-----KAIAESTPLPVMLYNVPG 148 (301)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHH-HH-----HHHHHTCSSCEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHH-HH-----HHHHHhcCCCEEEEeCcc
Confidence 33467788999999988876432211 11111 11 467778899999986554
No 133
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=42.73 E-value=76 Score=23.52 Aligned_cols=52 Identities=4% Similarity=-0.107 Sum_probs=31.4
Q ss_pred hHHHHHHHhcCCCEEEEccCCCCcc-cccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 86 GTVMSQVRKLEVSVLVLGQKKHSAF-INCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~~~~~~-~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
-.+.+.|++.++|-+++-....... .+-+..-. +.|...++.||++..-+..
T Consensus 86 i~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f------~~ia~a~~lPiilYn~P~~ 138 (291)
T 3a5f_A 86 IAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHF------KAVSDAVSTPIIIYNVPGR 138 (291)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-------CTGGGCCSCEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHH------HHHHHhcCCCEEEEeCccc
Confidence 3346778899999998887643221 11111111 3466777899998875543
No 134
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=42.64 E-value=1e+02 Score=23.07 Aligned_cols=90 Identities=8% Similarity=0.087 Sum_probs=43.4
Q ss_pred HHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHh----CCCCeEEEEEEecC---chhHH
Q 031262 16 KHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKAC----KPEVEVEALVIQGP---KLGTV 88 (162)
Q Consensus 16 ~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~v~~g~---~~~~I 88 (162)
...+..+++.+.. +....-+|...+...-.......+...++.+.+++.+.+. ..++.+.+.+..+- ....+
T Consensus 152 ~~~~~~aa~~~~~-g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~ 230 (336)
T 1f76_A 152 KDDYLICMEKIYA-YAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQV 230 (336)
T ss_dssp HHHHHHHHHHHGG-GCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHH
Confidence 3444445554543 5556666764332110000000112233444444444221 22455555543221 23566
Q ss_pred HHHHHhcCCCEEEEccCC
Q 031262 89 MSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 89 ~~~a~~~~~dliVmG~~~ 106 (162)
.+.+.+.++|.|++..+.
T Consensus 231 a~~l~~~Gvd~i~vsn~~ 248 (336)
T 1f76_A 231 ADSLVRHNIDGVIATNTT 248 (336)
T ss_dssp HHHHHHTTCSEEEECCCB
T ss_pred HHHHHHcCCcEEEEeCCc
Confidence 788889999999997653
No 135
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=41.83 E-value=77 Score=23.44 Aligned_cols=51 Identities=4% Similarity=-0.111 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 87 TVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 87 ~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
.+.+.|++.++|-+++-........ +-+.. .- +.|...++.||++..-+..
T Consensus 86 ~la~~a~~~Gadavlv~~P~y~~~s~~~l~~-~f-----~~ia~a~~lPiilYn~P~~ 137 (289)
T 2yxg_A 86 ELSVFAEDVGADAVLSITPYYNKPTQEGLRK-HF-----GKVAESINLPIVLYNVPSR 137 (289)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHH-HH-----HHHHHHCSSCEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHH-HH-----HHHHHhcCCCEEEEeCccc
Confidence 3467788999999988876432211 11111 11 4677888999999876543
No 136
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=41.79 E-value=1.2e+02 Score=23.63 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=28.7
Q ss_pred HHHhcCCCEEEEccCCC---CcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 91 QVRKLEVSVLVLGQKKH---SAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 91 ~a~~~~~dliVmG~~~~---~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
..++.++|.+++|+..- +..-+. .|+.. + --+.++-.+|++|+-+
T Consensus 251 ~M~~~~Vd~ViVGAD~V~aNG~v~NK-iGTy~---l-Al~Ak~~~vPfyV~ap 298 (383)
T 2a0u_A 251 LMLNRKIDAVVVGADRICQNGDTANK-IGTYN---L-AVSAKFHGVKLYVAAP 298 (383)
T ss_dssp HHHHSCCCEEEECCSEECTTCCEEEE-TTHHH---H-HHHHHHTTCCEEEECC
T ss_pred HhhcCCCCEEEECccEEecCCCEeec-ccHHH---H-HHHHHHcCCCEEEeCC
Confidence 34556799999999853 222222 34333 2 4456777999999855
No 137
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=41.74 E-value=73 Score=23.63 Aligned_cols=77 Identities=5% Similarity=-0.099 Sum_probs=41.4
Q ss_pred HHHHHhHHHhCCCCeEEEEEEecCchhH--HHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCceEE
Q 031262 60 NSLGSLCKACKPEVEVEALVIQGPKLGT--VMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADCLTV 136 (162)
Q Consensus 60 ~~~~~~~~~~~~~v~~~~~v~~g~~~~~--I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~pVl 136 (162)
+.++...+.....+.+-.-+...+..++ +.+.|++.++|-+++-........ +-+.. .- +.|...++.||+
T Consensus 57 ~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~-~f-----~~ia~a~~lPii 130 (292)
T 2vc6_A 57 QVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQ-HF-----KAIDAASTIPII 130 (292)
T ss_dssp HHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHH-HH-----HHHHHHCSSCEE
T ss_pred HHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHH-HH-----HHHHHhCCCCEE
Confidence 3333333332234444433322233443 467788999999988876432111 11110 11 467788899999
Q ss_pred EEecCC
Q 031262 137 GVRKQS 142 (162)
Q Consensus 137 vv~~~~ 142 (162)
+..-+.
T Consensus 131 lYn~P~ 136 (292)
T 2vc6_A 131 VYNIPG 136 (292)
T ss_dssp EEECHH
T ss_pred EEeCcc
Confidence 876554
No 138
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=41.65 E-value=1.1e+02 Score=23.44 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=29.0
Q ss_pred HHHHhcCCCEEEEccCCC---CcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 90 SQVRKLEVSVLVLGQKKH---SAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 90 ~~a~~~~~dliVmG~~~~---~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
-..++.++|.+++|+..- +..-+. .|+.. + --+.++..+|++++-+
T Consensus 221 ~~M~~~~Vd~VivGAd~V~aNG~v~NK-iGT~~---l-Al~Ak~~~vPfyV~ap 269 (347)
T 1t9k_A 221 WLMKRGLIDAVVVGADRIALNGDTANK-IGTYS---L-AVLAKRNNIPFYVAAP 269 (347)
T ss_dssp HHHHTTCCSEEEECCSEEETTSCEEEE-TTHHH---H-HHHHHHTTCCEEEECC
T ss_pred HHhhcCCCCEEEECccEEecCCCEEec-ccHHH---H-HHHHHHcCCCEEEecc
Confidence 334556799999999853 222222 34333 2 4466777999999854
No 139
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=41.29 E-value=74 Score=23.79 Aligned_cols=81 Identities=7% Similarity=-0.157 Sum_probs=44.3
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCc
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
+..+.++...+.....+.+-.-+...+. .-.+.+.+++.++|-+++-........ +-+.- .- +.|...++.
T Consensus 69 Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~-~f-----~~va~a~~l 142 (304)
T 3l21_A 69 EKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQA-HF-----TAVADATEL 142 (304)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHH-HH-----HHHHTSCSS
T ss_pred HHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHH-HH-----HHHHHhcCC
Confidence 3333444444433344444433322233 444557888999999999875432211 11111 11 567788899
Q ss_pred eEEEEecCCC
Q 031262 134 LTVGVRKQSK 143 (162)
Q Consensus 134 pVlvv~~~~~ 143 (162)
||++..-+..
T Consensus 143 PiilYn~P~~ 152 (304)
T 3l21_A 143 PMLLYDIPGR 152 (304)
T ss_dssp CEEEEECHHH
T ss_pred CEEEEeCccc
Confidence 9999876543
No 140
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=41.01 E-value=92 Score=24.03 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=28.2
Q ss_pred HHHhcCCCEEEEccCCC--CcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 91 QVRKLEVSVLVLGQKKH--SAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 91 ~a~~~~~dliVmG~~~~--~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
..++.++|.+++|+..- ++.-+ -.|+.. + --++++..+|++|+-+
T Consensus 220 ~M~~~~Vd~VivGAd~V~aNGv~N-KiGT~~---l-Al~Ak~~~vPfyV~a~ 266 (351)
T 1t5o_A 220 VMQKGMVDKVIVGADRIVRDAVFN-KIGTYT---V-SVVAKHHNIPFYVAAP 266 (351)
T ss_dssp HHHTTCCSEEEECCSEEETTEEEE-ETTHHH---H-HHHHHHTTCCEEEECC
T ss_pred HhhcCCCCEEEECccchhhcCccc-ccCHHH---H-HHHHHHcCCCEEEeCc
Confidence 34556799999999863 22211 133332 2 4466777999999854
No 141
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=40.22 E-value=92 Score=23.13 Aligned_cols=81 Identities=6% Similarity=-0.125 Sum_probs=44.3
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcc-cccccccCCcchhHHHhhhhCCc
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAF-INCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~-~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
+..+.++...+.....+.+-.-+...+. .-.+.+.+++.++|-+++-....... .+-+.. .- +.|...++.
T Consensus 61 Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~-~f-----~~va~a~~l 134 (297)
T 3flu_A 61 EHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQ-HF-----KTIAEATSI 134 (297)
T ss_dssp HHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHH-HH-----HHHHHHCCS
T ss_pred HHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHH-HH-----HHHHHhCCC
Confidence 3333444444433334444443322233 34455788899999999887543221 111111 11 567888899
Q ss_pred eEEEEecCCC
Q 031262 134 LTVGVRKQSK 143 (162)
Q Consensus 134 pVlvv~~~~~ 143 (162)
||++..-+..
T Consensus 135 PiilYn~P~~ 144 (297)
T 3flu_A 135 PMIIYNVPGR 144 (297)
T ss_dssp CEEEEECHHH
T ss_pred CEEEEECCch
Confidence 9999876543
No 142
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=39.72 E-value=78 Score=23.68 Aligned_cols=52 Identities=10% Similarity=-0.022 Sum_probs=32.2
Q ss_pred hHHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 86 GTVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
-.+.+.|++.++|-+++-........ +-+.- .- +.|+..++.||++..-+..
T Consensus 97 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~-~f-----~~va~a~~lPiilYn~P~~ 149 (306)
T 1o5k_A 97 LKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQ-HY-----KYISERTDLGIVVYNVPGR 149 (306)
T ss_dssp HHHHHHHHHHTCSEEEEECCCSSCCCHHHHHH-HH-----HHHHTTCSSCEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHH-HH-----HHHHHhCCCCEEEEeCccc
Confidence 33467788999999988876432211 11111 11 4577778999998876543
No 143
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=39.66 E-value=1.2e+02 Score=23.01 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=39.3
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEecCc----hhHHHHHHHhcCCCEEE-EccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQGPK----LGTVMSQVRKLEVSVLV-LGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~g~~----~~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..+.+.+..++ .++++......+++ .+.+ +.+++.++|+|| +|.- |+. +.++.+.-...
T Consensus 49 ~~~~v~~~L~~--~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGGG-----------sv~--D~aK~vA~~~~ 112 (354)
T 3ce9_A 49 FGETIEKSIKS--SNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGGG-----------KAI--DAVKYMAFLRK 112 (354)
T ss_dssp HHHHHHHHHHT--TTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEESH-----------HHH--HHHHHHHHHHT
T ss_pred HHHHHHHHHHH--cCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECCh-----------HHH--HHHHHHHhhcC
Confidence 44555554444 56666544313443 4455 666677889887 5542 222 22255555567
Q ss_pred ceEEEEecCC
Q 031262 133 CLTVGVRKQS 142 (162)
Q Consensus 133 ~pVlvv~~~~ 142 (162)
+|++.||-..
T Consensus 113 ~p~i~IPTT~ 122 (354)
T 3ce9_A 113 LPFISVPTST 122 (354)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEecCcc
Confidence 8999998754
No 144
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=39.57 E-value=61 Score=25.31 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=49.2
Q ss_pred EEEEEeCCChhhHHHHHHHHHhccCCCC---------E-----EEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHh
Q 031262 4 RVMVVVDQTSHSKHAMMWALTHVTNKGD---------L-----LTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKAC 69 (162)
Q Consensus 4 ~Ilv~vD~S~~s~~al~~A~~~a~~~~~---------~-----l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (162)
+|-|.+.-...|+...+-|.++.+..|. . =.++|+.-+...+ .......+.+.+.+..
T Consensus 14 ~igi~t~t~s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~-------se~~ttI~~I~~~a~~- 85 (371)
T 3qi7_A 14 KVAVVTQPLSENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFT-------SNIDSAINKIVKLADD- 85 (371)
T ss_dssp EEEEEECCTTTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGG-------GGHHHHHHHHHGGGGC-
T ss_pred EEEEEcCCcCCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCch-------HHHHHHHHHHHHHhhc-
Confidence 4666665544566666666655554332 1 2477774222222 0112224455555554
Q ss_pred CCCCeEEEEEEec-Cc-hhHHHHHHHhcCCCEEEEccC
Q 031262 70 KPEVEVEALVIQG-PK-LGTVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 70 ~~~v~~~~~v~~g-~~-~~~I~~~a~~~~~dliVmG~~ 105 (162)
++ ++.++... .+ ....++..++.++|.|+++..
T Consensus 86 -~g--yk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~ 120 (371)
T 3qi7_A 86 -KE--VQAIVVSTDQAGLLPALQKVKEKRPEIITISAP 120 (371)
T ss_dssp -TT--EEEEEEECSSCCCHHHHHHHHHHCTTSEEEESS
T ss_pred -CC--CeEEEEECCCcchHHHHHHHHhcCCCEEEEecc
Confidence 55 55555432 23 466788899999998887764
No 145
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=39.51 E-value=41 Score=23.97 Aligned_cols=34 Identities=6% Similarity=-0.023 Sum_probs=26.4
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEE
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLH 37 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~h 37 (162)
.++|++++.+|-.+..+.++.-.+.+ .+ +++++-
T Consensus 19 ~k~IllgvTGsiaa~k~~~ll~~L~~-~g-~V~vv~ 52 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIKFGNLCHCFTE-WA-EVRAVV 52 (209)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHHT-TS-EEEEEE
T ss_pred CCEEEEEEeCcHHHHHHHHHHHHHhc-CC-CEEEEE
Confidence 47899999999988888888877654 45 666554
No 146
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=39.50 E-value=82 Score=23.72 Aligned_cols=81 Identities=5% Similarity=-0.157 Sum_probs=44.5
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCc
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
+..+.++...+.....+.+-.-+...+. .-.+.+.|++.++|-+++-........ +-+.- .- +.|+..++.
T Consensus 78 Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~-~f-----~~va~a~~l 151 (315)
T 3na8_A 78 EWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQ-HY-----RAVGEAIGV 151 (315)
T ss_dssp HHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHH-HH-----HHHHHHCSS
T ss_pred HHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHH-HH-----HHHHHhCCC
Confidence 3333344444433334444443322233 344557788999999999876433211 11111 11 567888899
Q ss_pred eEEEEecCCC
Q 031262 134 LTVGVRKQSK 143 (162)
Q Consensus 134 pVlvv~~~~~ 143 (162)
||++..-+..
T Consensus 152 PiilYn~P~~ 161 (315)
T 3na8_A 152 PVMLYNNPGT 161 (315)
T ss_dssp CEEEEECHHH
T ss_pred cEEEEeCcch
Confidence 9999876543
No 147
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=39.32 E-value=94 Score=23.37 Aligned_cols=80 Identities=5% Similarity=-0.079 Sum_probs=43.5
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCce
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADCL 134 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~p 134 (162)
..+.++...+.....+.+-.-+...+. .-.+.+.+++.++|-+++......... +-+. ..- +.|+..++.|
T Consensus 78 r~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~-~~f-----~~va~a~~lP 151 (314)
T 3qze_A 78 HIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMY-QHF-----RHIAEAVAIP 151 (314)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHH-HHH-----HHHHHHSCSC
T ss_pred HHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHH-HHH-----HHHHHhcCCC
Confidence 333344444433334444333322233 344457788999999999875432211 1111 111 5678888999
Q ss_pred EEEEecCCC
Q 031262 135 TVGVRKQSK 143 (162)
Q Consensus 135 Vlvv~~~~~ 143 (162)
|++..-+..
T Consensus 152 iilYn~P~~ 160 (314)
T 3qze_A 152 QILYNVPGR 160 (314)
T ss_dssp EEEEECHHH
T ss_pred EEEEeCccc
Confidence 999876543
No 148
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=39.22 E-value=71 Score=23.66 Aligned_cols=49 Identities=4% Similarity=-0.123 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCceEEEEecCC
Q 031262 88 VMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADCLTVGVRKQS 142 (162)
Q Consensus 88 I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~ 142 (162)
+.+.|++.++|-+++-........ +-+.- .- +.|...++.|+++..-+.
T Consensus 88 la~~a~~~Gadavlv~~P~y~~~s~~~l~~-~f-----~~ia~a~~lPiilYn~P~ 137 (292)
T 2ojp_A 88 LTQRFNDSGIVGCLTVTPYYNRPSQEGLYQ-HF-----KAIAEHTDLPQILYNVPS 137 (292)
T ss_dssp HHHHTTTSSCSEEEEECCCSSCCCHHHHHH-HH-----HHHHTTCSSCEEEECCHH
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHH-HH-----HHHHHhcCCCEEEEeCcc
Confidence 457788899999988875432111 11111 11 457777899999886554
No 149
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=39.17 E-value=79 Score=24.18 Aligned_cols=51 Identities=4% Similarity=-0.130 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCEEEEccCCCCcc-cccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 87 TVMSQVRKLEVSVLVLGQKKHSAF-INCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 87 ~I~~~a~~~~~dliVmG~~~~~~~-~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
.+.+.|++.++|-+++-....... .+-+.-- - +.|+..++.||++..-+..
T Consensus 117 ~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~-f-----~~VA~a~~lPiilYn~P~~ 168 (343)
T 2v9d_A 117 ELSQHAQQAGADGIVVINPYYWKVSEANLIRY-F-----EQVADSVTLPVMLYNFPAL 168 (343)
T ss_dssp HHHHHHHHHTCSEEEEECCSSSCCCHHHHHHH-H-----HHHHHTCSSCEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHH-H-----HHHHHhcCCCEEEEeCchh
Confidence 346778899999998887543211 1111111 1 4577788999999876543
No 150
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=39.17 E-value=24 Score=27.22 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=34.0
Q ss_pred chhHHHHHHHhcCCCEEEEccCCC-Cc-ccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 84 KLGTVMSQVRKLEVSVLVLGQKKH-SA-FINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 84 ~~~~I~~~a~~~~~dliVmG~~~~-~~-~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
+....++.++ ++|+||+|--.. ++ +..+++.... +. ++++++|++.|.+-
T Consensus 178 a~p~al~AI~--~AD~IvlgPGSlyTSI~P~Llv~gi~-----~A-i~~s~A~kV~V~Nl 229 (341)
T 2p0y_A 178 AVQPVIDAIM--AADQIVLGPGSLFTSILPNLTIGNIG-----RA-VCESDAEVVYICNI 229 (341)
T ss_dssp CCHHHHHHHH--HCSEEEECSSCCCCCCHHHHSSHHHH-----HH-HHHCSSEEEEECCS
T ss_pred CCHHHHHHHH--hCCEEEECCCCCHHHhcccccCccHH-----HH-HHhCCCCEEEEeCC
Confidence 3677888888 679999998653 22 3344433333 54 67799999999774
No 151
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=38.54 E-value=76 Score=23.61 Aligned_cols=51 Identities=2% Similarity=-0.111 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 87 TVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 87 ~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
.+.+.|++.++|-+++-........ +-+..- - +.|...++.||++..-+..
T Consensus 86 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~-f-----~~va~a~~lPiilYn~P~~ 137 (297)
T 2rfg_A 86 RYAQHAQQAGADAVLCVAGYYNRPSQEGLYQH-F-----KMVHDAIDIPIIVYNIPPR 137 (297)
T ss_dssp HHHHHHHHHTCSEEEECCCTTTCCCHHHHHHH-H-----HHHHHHCSSCEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHH-H-----HHHHHhcCCCEEEEeCccc
Confidence 3467788999999998876432211 111111 1 4577788999998875543
No 152
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=38.42 E-value=1e+02 Score=22.87 Aligned_cols=53 Identities=2% Similarity=-0.133 Sum_probs=33.8
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
.-.+.+.+++.++|-+++-........ +-+.- .- +.|...++.||++..-+..
T Consensus 92 ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~-~f-----~~va~a~~lPiilYn~P~~ 145 (301)
T 3m5v_A 92 AVGLAKFAKEHGADGILSVAPYYNKPTQQGLYE-HY-----KAIAQSVDIPVLLYNVPGR 145 (301)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHH-HH-----HHHHHHCSSCEEEEECHHH
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHH-HH-----HHHHHhCCCCEEEEeCchh
Confidence 344457888999999999876432211 11111 11 5678888999999876543
No 153
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=38.35 E-value=57 Score=24.73 Aligned_cols=42 Identities=12% Similarity=-0.008 Sum_probs=27.3
Q ss_pred HHHHhHHHhCCCCeEEEEEEecCc-hhHHHHHHHhcCCCEEEEccCCC
Q 031262 61 SLGSLCKACKPEVEVEALVIQGPK-LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 61 ~~~~~~~~~~~~v~~~~~v~~g~~-~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.+++.+.+ .++.+.. ..+. .+..++..++.++|++|+-+.++
T Consensus 51 pv~~~A~~--~gIpv~~---~~~~~~~~~~~~l~~~~~Dliv~~~y~~ 93 (317)
T 3rfo_A 51 PVKVEAEK--HGIPVLQ---PLRIREKDEYEKVLALEPDLIVTAAFGQ 93 (317)
T ss_dssp HHHHHHHH--TTCCEEC---CSCTTSHHHHHHHHHHCCSEEEESSCCS
T ss_pred HHHHHHHH--cCCCEEc---cccCCCHHHHHHHHhcCCCEEEEcCchh
Confidence 45666666 4666431 1222 34557788899999999998764
No 154
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=38.32 E-value=54 Score=25.64 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHH
Q 031262 14 HSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVR 93 (162)
Q Consensus 14 ~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~ 93 (162)
.+++..++|.+.|.+.+.+|+++|=-.... ...-..+..++.+++ .+++.++...+ .+..-.++.-=+
T Consensus 180 ~~eRIar~AFe~A~~rrkkVT~v~KaNvl~----------~~glf~~~~~eva~e-ypdV~~~~~~V-D~~am~lv~~P~ 247 (375)
T 3vmk_A 180 EIRRIAKIAFESAQGRRKKVTSVDKANVLA----------CSVLWREVVEEVAKD-YPDVELEHIYI-DNATMQLLRRPN 247 (375)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEECTTTCH----------HHHHHHHHHHHHHTT-CTTSEEEEEEH-HHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEECchhhh----------hhhHHHHHHHHHHHH-CCCceEeeeeH-HHHHHHHHhCcc
Confidence 567888888888887778999998433221 112233445555554 36777776553 222444444333
Q ss_pred hcCCCEEEEcc
Q 031262 94 KLEVSVLVLGQ 104 (162)
Q Consensus 94 ~~~~dliVmG~ 104 (162)
+.|.||+..
T Consensus 248 --~FDViVt~N 256 (375)
T 3vmk_A 248 --EFDVMLCSN 256 (375)
T ss_dssp --GCSEEEECH
T ss_pred --cCcEEEECc
Confidence 458777655
No 155
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=37.99 E-value=1.1e+02 Score=22.01 Aligned_cols=76 Identities=11% Similarity=0.010 Sum_probs=47.5
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..++.+.+++.+.+ .+.++.+....+++ ....++...+.++|-||+.......+... -.-+...+
T Consensus 17 ~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~-----------~~~~~~~~ 83 (313)
T 3m9w_A 17 WQKDRDIFVKKAES--LGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNV-----------VKEAKQEG 83 (313)
T ss_dssp THHHHHHHHHHHHH--TSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHH-----------HHHHHTTT
T ss_pred HHHHHHHHHHHHHH--cCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHH-----------HHHHHHCC
Confidence 36677777777777 46666554444444 23556666677899998876543322211 22355679
Q ss_pred ceEEEEecCCC
Q 031262 133 CLTVGVRKQSK 143 (162)
Q Consensus 133 ~pVlvv~~~~~ 143 (162)
+||+.+.....
T Consensus 84 iPvV~~~~~~~ 94 (313)
T 3m9w_A 84 IKVLAYDRMIN 94 (313)
T ss_dssp CEEEEESSCCT
T ss_pred CeEEEECCcCC
Confidence 99999976544
No 156
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=37.97 E-value=1.1e+02 Score=23.87 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=28.6
Q ss_pred HHHhcCCCEEEEccCCC---CcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 91 QVRKLEVSVLVLGQKKH---SAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 91 ~a~~~~~dliVmG~~~~---~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
..++.++|.+++|+..- +..-+. .|+.. + --++++..+|++|+-+
T Consensus 247 ~M~~~~Vd~ViVGAD~V~aNG~v~NK-iGTy~---l-Al~Ak~~~vPfyV~ap 294 (374)
T 2yvk_A 247 TMKEKQISAVIVGADRIAKNGDTANK-IGTYG---L-AILANAFDIPFFVAAP 294 (374)
T ss_dssp HHHHTTCCEEEECCSEEETTCCEEEE-TTHHH---H-HHHHHHTTCCEEEECC
T ss_pred HhhhcCCCEEEECccEEecCCCEEec-ccHHH---H-HHHHHHcCCCEEEecc
Confidence 34556799999999853 222222 34333 2 4466777999999855
No 157
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=37.71 E-value=51 Score=20.20 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=23.9
Q ss_pred cEEEEEeCC----ChhhHHHHHHHHHhccCCCC-EEEEEEEe
Q 031262 3 KRVMVVVDQ----TSHSKHAMMWALTHVTNKGD-LLTLLHVV 39 (162)
Q Consensus 3 ~~Ilv~vD~----S~~s~~al~~A~~~a~~~~~-~l~l~hv~ 39 (162)
+++++-+.. ++.+..+++.|...+...+. ++.++-..
T Consensus 2 ~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~ 43 (117)
T 1jx7_A 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMS 43 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECG
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEc
Confidence 445555544 45678899999887755366 77666554
No 158
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=37.68 E-value=94 Score=22.97 Aligned_cols=81 Identities=4% Similarity=-0.044 Sum_probs=44.0
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCc
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
+..+.++...+.....+.+-.-+...+. .-.+.+.+++.++|-+++-........ +-+.- .- +.|...++.
T Consensus 55 Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~-~f-----~~ia~a~~l 128 (291)
T 3tak_A 55 EHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQ-HY-----KAIAEAVEL 128 (291)
T ss_dssp HHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHH-HH-----HHHHHHCCS
T ss_pred HHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHH-HH-----HHHHHhcCC
Confidence 3333444444433334444333322233 344457788999999998875432211 11111 11 567888899
Q ss_pred eEEEEecCCC
Q 031262 134 LTVGVRKQSK 143 (162)
Q Consensus 134 pVlvv~~~~~ 143 (162)
||++..-+..
T Consensus 129 PiilYn~P~~ 138 (291)
T 3tak_A 129 PLILYNVPGR 138 (291)
T ss_dssp CEEEEECHHH
T ss_pred CEEEEecccc
Confidence 9999876543
No 159
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=37.64 E-value=73 Score=23.62 Aligned_cols=52 Identities=10% Similarity=-0.118 Sum_probs=31.9
Q ss_pred hHHHHHHHhcCCCEEEEccCCCCcc-cccccccCCcchhHHHhhhhCCceEEEEecCCC
Q 031262 86 GTVMSQVRKLEVSVLVLGQKKHSAF-INCFCGTSSSEEFVDQCIKKADCLTVGVRKQSK 143 (162)
Q Consensus 86 ~~I~~~a~~~~~dliVmG~~~~~~~-~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~~ 143 (162)
-.+.+.|++.++|-+++-....... ..-+.- .- +.|...++.||++..-+..
T Consensus 89 i~la~~a~~~Gadavlv~~P~y~~~~~~~l~~-~f-----~~va~a~~lPiilYn~P~~ 141 (293)
T 1f6k_A 89 VELGKYATELGYDCLSAVTPFYYKFSFPEIKH-YY-----DTIIAETGSNMIVYSIPFL 141 (293)
T ss_dssp HHHHHHHHHHTCSEEEEECCCSSCCCHHHHHH-HH-----HHHHHHHCCCEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHH-HH-----HHHHHhCCCCEEEEECccc
Confidence 3346778899999998887643221 111111 11 4567778899998875443
No 160
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=37.60 E-value=70 Score=22.35 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=37.2
Q ss_pred HHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcC--CCEEEEccCCC---CcccccccccCCcchhHHHhhhhCCceEE
Q 031262 62 LGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLE--VSVLVLGQKKH---SAFINCFCGTSSSEEFVDQCIKKADCLTV 136 (162)
Q Consensus 62 ~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~--~dliVmG~~~~---~~~~~~~~Gs~~~~~~~~~v~~~~~~pVl 136 (162)
.+++.+. ++++..+. . .++-...++.+ +|.+++|++.- +..-+. .|+.. + --++++..+|++
T Consensus 23 a~eL~~~---gI~vtlI~--D---sa~~~~m~~~~~~Vd~VivGAd~v~~nG~v~nk-iGT~~---~-Al~Ak~~~vPf~ 89 (191)
T 1w2w_B 23 AYELVYD---KIPSTLIT--D---SSIAYRIRTSPIPIKAAFVGADRIVRNGDTANK-IGTLQ---L-AVICKQFGIKFF 89 (191)
T ss_dssp HHHHHHH---TCCBEEBC--G---GGHHHHHHHCSSCEEEEEECCSEECTTSCEEEE-TTHHH---H-HHHHHHHTCEEE
T ss_pred HHHHHHc---CCCEEEEe--c---hHHHHHHHhCCCCCCEEEECccEEecCCCEEec-ccHHH---H-HHHHHHcCCCEE
Confidence 4455544 66665444 2 23333344555 99999999853 222221 34333 2 335566699999
Q ss_pred EEec
Q 031262 137 GVRK 140 (162)
Q Consensus 137 vv~~ 140 (162)
++-+
T Consensus 90 V~a~ 93 (191)
T 1w2w_B 90 VVAP 93 (191)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9855
No 161
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=37.53 E-value=31 Score=24.42 Aligned_cols=126 Identities=10% Similarity=-0.007 Sum_probs=64.9
Q ss_pred CcEEEEEeCCChhhH-HHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE
Q 031262 2 RKRVMVVVDQTSHSK-HAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI 80 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~-~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~ 80 (162)
+++|++++.||-.+. .+++..-.+.+ .|.+++++-.-.-.....+.+ ..++..+.++.+... .+..+ ..
T Consensus 7 ~k~I~lgiTGs~aa~~k~~~ll~~L~~-~g~eV~vv~T~~A~~~i~~~~----~~~~~~~~l~~l~g~---~v~~~--~~ 76 (201)
T 3lqk_A 7 GKHVGFGLTGSHCTYHEVLPQMERLVE-LGAKVTPFVTHTVQTTDTKFG----ESSEWINKIKQITEE---PIVDS--MV 76 (201)
T ss_dssp TCEEEEECCSCGGGGGGTHHHHHHHHH-TTCEEEEECSSCSCCTTCCTT----CSCHHHHHHHHHCCS---CCBCS--HH
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHHhh-CCCEEEEEEChhHHHHHHHhh----chhHHHHHHHHHhCC---CeEee--cC
Confidence 579999999998777 78888777654 577766554221111111111 123333333333211 11110 00
Q ss_pred ecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhh---hhCCceEEEEecCCCCC
Q 031262 81 QGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCI---KKADCLTVGVRKQSKGM 145 (162)
Q Consensus 81 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~---~~~~~pVlvv~~~~~~~ 145 (162)
..+.| .-...+|++|+.--..+.+.++-.|-..+ .+..++ -+..+|+++++..+..+
T Consensus 77 ---~~~hi---~~s~~aD~mvIaP~TanTlAkiA~GiaDn--Llt~aa~~~Lk~~~plvl~Pamn~~m 136 (201)
T 3lqk_A 77 ---KAEPF---GPKTPLDCMVIAPMTGNSTSKFANAMTDS--PVLMGAKATLRNGKPVVVGISTNDAL 136 (201)
T ss_dssp ---HHGGG---TTTSCCSEEEEEEECHHHHHHHHTTCCCS--HHHHHHHHHHHTTCCEEEEEEETTTT
T ss_pred ---ccccc---ccccccCEEEEccCCHHHHHHHHCcccCc--HHHHHHHHHhhcCCCEEEEECCChhH
Confidence 01111 11446899998876666666655554441 112222 23589999998754433
No 162
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=37.38 E-value=78 Score=23.37 Aligned_cols=118 Identities=8% Similarity=0.069 Sum_probs=66.1
Q ss_pred hHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCC--CccccchHHH-------HHHHHhHHHhCCCCeEEEEEEec---
Q 031262 15 SKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHH--DSSACCPYLA-------NSLGSLCKACKPEVEVEALVIQG--- 82 (162)
Q Consensus 15 s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~v~~g--- 82 (162)
....+...+++|++.|-.|- -| +.+++...++ ...-..+++. ..++.++.. .+.++..+--.|
T Consensus 41 Dp~~M~~tv~lA~~~gV~IG-AH--PgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~--~G~~l~hVKPHGALY 115 (255)
T 1v6t_A 41 DPLVMRKTVRLAKENDVQVG-AH--PGYPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKA--EGLELQHVKPHGALY 115 (255)
T ss_dssp CHHHHHHHHHHHHHTTCEEE-EE--CCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHH--TTCCEEEECCCHHHH
T ss_pred CHHHHHHHHHHHHHcCCeEe-cC--CCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--cCCEeEEeccCHHHH
Confidence 34556667777766664432 33 2222221111 1111222222 345677776 677777665555
Q ss_pred -----Cc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEe--cCCCCCCcEEEec
Q 031262 83 -----PK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVR--KQSKGMGGYIIST 152 (162)
Q Consensus 83 -----~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~--~~~~~~~~~~~~~ 152 (162)
|+ +++|++.+.+.+.+|+++|-.+ |.. ....+...+|++--- .+.....|.|++.
T Consensus 116 N~~~~d~~~A~av~~av~~~d~~L~l~~l~g----------s~~-----~~~A~~~Gl~~~~E~FADR~Y~~dG~LvpR 179 (255)
T 1v6t_A 116 NAMVKEEDLARAVIEGILDFDKDLILVTLSN----------SRV-----ADIAEEMGLKVAHEVFADRAYNPDGTLVPR 179 (255)
T ss_dssp HHHHHCHHHHHHHHHHHHHHCTTCEEEEETT----------CHH-----HHHHHHHTCCEEEEECTTBCBCTTSCBCC-
T ss_pred HHHhhCHHHHHHHHHHHHHhCCCcEEEecCC----------hHH-----HHHHHHcCCcEEEEEeeccccCCCCCEecC
Confidence 33 8999999999999999999654 333 566777778776532 2322233555543
No 163
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=37.32 E-value=56 Score=20.32 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=26.3
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCC
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
-+.+.+++.+++ .++++++.-..-...+. ++. ++|++++|..-+
T Consensus 18 ~l~~k~~~~~~~--~gi~~~i~a~~~~~~~~---~~~--~~Dvil~~pqv~ 61 (106)
T 1e2b_A 18 LLVSKMRAQAEK--YEVPVIIEAFPETLAGE---KGQ--NADVVLLGPQIA 61 (106)
T ss_dssp HHHHHHHHHHHH--SCCSEEEEEECSSSTTH---HHH--HCSEEEECTTSG
T ss_pred HHHHHHHHHHHH--CCCCeEEEEecHHHHHh---hcc--CCCEEEEccchh
Confidence 455678888887 57766644433222222 234 479999998643
No 164
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=37.30 E-value=30 Score=26.51 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=33.8
Q ss_pred hhHHHHHHHhcCCCEEEEccCCC-Cc-ccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKH-SA-FINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~-~~-~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
....++.++ ++|+||+|--.. +. +..+++.... +. ++++++|++.|.+-
T Consensus 175 ~p~al~AI~--~AD~IvlgPGSl~TSI~P~Llv~gi~-----~A-i~~s~A~kV~v~Nl 225 (326)
T 2q7x_A 175 SRRVVQTIL--ESDMIVLGPGSLFTSILPNIVIXEIG-----RA-LLETXAEIAYVCNI 225 (326)
T ss_dssp CSHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHH-----HH-HHHCSSEEEEECCS
T ss_pred CHHHHHHHH--hCCEEEECCCCCHHHHhhhhhhccHH-----HH-HHhccCceEEeccC
Confidence 677888888 679999998653 22 3344433333 54 67799999999773
No 165
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=37.16 E-value=73 Score=20.78 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=25.3
Q ss_pred CcEEEEEeCCCh----hhHHHHHHHHHhccCCCCEEEEEEE
Q 031262 2 RKRVMVVVDQTS----HSKHAMMWALTHVTNKGDLLTLLHV 38 (162)
Q Consensus 2 ~~~Ilv~vD~S~----~s~~al~~A~~~a~~~~~~l~l~hv 38 (162)
||++++-+..++ .+..++++|...+.. +.++.++-.
T Consensus 5 Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~-~~~v~Vff~ 44 (136)
T 2hy5_B 5 VKKFMYLNRKAPYGTIYAWEALEVVLIGAAF-DQDVCVLFL 44 (136)
T ss_dssp CCEEEEEECSCTTTSSHHHHHHHHHHHHGGG-CCEEEEEEC
T ss_pred hhEEEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 677888887765 457889998877654 456655554
No 166
>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}
Probab=37.03 E-value=50 Score=26.43 Aligned_cols=95 Identities=9% Similarity=-0.018 Sum_probs=52.1
Q ss_pred cEEEEEeCCChh-hHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 3 KRVMVVVDQTSH-SKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 3 ~~Ilv~vD~S~~-s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
.++.|++|.... .....+++..++...++.+..+=+--+. + .....+..+.+++.+.....+..+-..+--
T Consensus 15 ~~l~vaLD~~~~~~~~~~~~a~~~v~~~~~~v~~~Kvg~~l--f------~~~G~~~v~~L~~~~~~~~~g~~VflDlK~ 86 (453)
T 3qw4_B 15 SLLCVGLDPRAKTAAAAVEECKRLIEQTHEYAAAYKPNAAF--F------EFFGAEGWAALSEVIRAVPAGIPVVLDAKR 86 (453)
T ss_dssp CCEEEEECCCCSSHHHHHHHHHHHHHHHGGGCSEEEEBHHH--H------HTTHHHHHHHHHHHHHTSCTTSCBEEEEEE
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHHhCCcCcEEEEcHHH--H------HhcCHHHHHHHHHHHHhhcCCCeEEEEeec
Confidence 468999997652 4555677777776554444333322111 1 112334444555544433345566666666
Q ss_pred cCchhHHHHHHH----hcCCCEEEEccC
Q 031262 82 GPKLGTVMSQVR----KLEVSVLVLGQK 105 (162)
Q Consensus 82 g~~~~~I~~~a~----~~~~dliVmG~~ 105 (162)
+|...+...+++ +.++|++.+-..
T Consensus 87 ~DIpnT~~~~a~~~~~~lg~d~vTvh~~ 114 (453)
T 3qw4_B 87 GDIADTADAYATSAFKHLNAHAITASPY 114 (453)
T ss_dssp CCCHHHHHHHHHHHHTTSCCSEEEECST
T ss_pred CChHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 787655555443 367898888544
No 167
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=36.82 E-value=84 Score=20.26 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=41.0
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceE
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLT 135 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pV 135 (162)
....+.++.+.... .+ ..... .-...+..++.+++..+|+|++...-.+. .+.++++.+....++|+
T Consensus 35 ~~~~~~l~~~L~~~-~~--~~~v~-~~~~~~~al~~l~~~~~dlvilD~~l~~~---------~g~~l~~~lr~~~~~~i 101 (164)
T 3t8y_A 35 AFMRMVLKDIIDSQ-PD--MKVVG-FAKDGLEAVEKAIELKPDVITMDIEMPNL---------NGIEALKLIMKKAPTRV 101 (164)
T ss_dssp HHHHHHHHHHHHTS-TT--EEEEE-EESSHHHHHHHHHHHCCSEEEECSSCSSS---------CHHHHHHHHHHHSCCEE
T ss_pred HHHHHHHHHHHhcC-CC--eEEEE-ecCCHHHHHHHhccCCCCEEEEeCCCCCC---------CHHHHHHHHHhcCCceE
Confidence 44455566665542 12 22221 22334445566667789999998864321 11223356666667898
Q ss_pred EEEecCC
Q 031262 136 VGVRKQS 142 (162)
Q Consensus 136 lvv~~~~ 142 (162)
+++-...
T Consensus 102 i~~s~~~ 108 (164)
T 3t8y_A 102 IMVSSLT 108 (164)
T ss_dssp EEEESSC
T ss_pred EEEecCC
Confidence 8886643
No 168
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=36.75 E-value=54 Score=25.08 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=34.5
Q ss_pred chhHHHHHHHhcCCCEEEEccCCC-Cc-ccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 84 KLGTVMSQVRKLEVSVLVLGQKKH-SA-FINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 84 ~~~~I~~~a~~~~~dliVmG~~~~-~~-~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
+....++.++ ++|+||+|-... +. +..+++.... +. ++++++|++.|.+-
T Consensus 168 ~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~-----~A-i~~s~A~kV~v~Nl 219 (323)
T 2o2z_A 168 PLREGLEAIR--KADVIVIGPGSLYTSVLPNLLVPGIC-----EA-IKQSTARKVYICNV 219 (323)
T ss_dssp CCHHHHHHHH--HCSEEEECSSCTTTTHHHHHTSTTHH-----HH-HHHCCSEEEEECCS
T ss_pred CCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHH-----HH-HHhCCCCEEEEcCC
Confidence 3677888888 679999998653 32 2334443333 54 67799999999774
No 169
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=36.63 E-value=36 Score=24.82 Aligned_cols=69 Identities=10% Similarity=0.049 Sum_probs=38.7
Q ss_pred EEEecCc----hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecC---C-CCCCcEE
Q 031262 78 LVIQGPK----LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ---S-KGMGGYI 149 (162)
Q Consensus 78 ~v~~g~~----~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~---~-~~~~~~~ 149 (162)
.+..||| ...+++...+.++|+|.+|-...-...+.+ +.++.+-+ .++|+++..-- . ....|++
T Consensus 11 ~i~~gDP~~~~t~~~~~~l~~~GaD~ielG~S~Gvt~~~~~-------~~v~~ir~-~~~Pivlm~y~~n~i~~G~dg~i 82 (240)
T 1viz_A 11 HVFKLDPNKDLPDEQLEILCESGTDAVIIGGSDGVTEDNVL-------RMMSKVRR-FLVPCVLEVSAIEAIVPGFDLYF 82 (240)
T ss_dssp EEEEECTTSCCCHHHHHHHHTSCCSEEEECC----CHHHHH-------HHHHHHTT-SSSCEEEECSCGGGCCSCCSEEE
T ss_pred EEEeeCCCccccHHHHHHHHHcCCCEEEECCCCCCCHHHHH-------HHHHHhhC-cCCCEEEecCccccccCCCCEEE
Confidence 3445666 356778888899999999974212122211 11144433 68999986543 1 1123777
Q ss_pred Eecee
Q 031262 150 ISTRW 154 (162)
Q Consensus 150 ~~~~~ 154 (162)
+...+
T Consensus 83 iPdLp 87 (240)
T 1viz_A 83 IPSVL 87 (240)
T ss_dssp EEEET
T ss_pred EcccC
Confidence 76643
No 170
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=36.56 E-value=1.4e+02 Score=22.67 Aligned_cols=94 Identities=18% Similarity=0.130 Sum_probs=54.0
Q ss_pred CEEEEEEEeCCCCCCCCCCCc------cccchHHHHHHHHhHHHhCCCCeEEEEEEecCch-------------------
Q 031262 31 DLLTLLHVVPPPKPNTSHHDS------SACCPYLANSLGSLCKACKPEVEVEALVIQGPKL------------------- 85 (162)
Q Consensus 31 ~~l~l~hv~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~------------------- 85 (162)
.+|+++|.-+-+....+.... .--..++...++++.++. ++ ...+-.||..
T Consensus 10 ~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~-~~---~llld~GD~~qGs~~~~~~~~~~~~~g~~ 85 (341)
T 3gve_A 10 VHLSILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQN-PN---TLLVDNGDLIQGNPLGEYAVKYQKDDIIS 85 (341)
T ss_dssp EEEEEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHHC-SS---EEEEECSCCSCSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEeccCCCccCccccCCCccccCCHHHHHHHHHHHHhcC-CC---EEEEecCccCCCcHHHHHhhhcccccccc
Confidence 469999998776543222110 112245555556655552 22 2344456531
Q ss_pred ----hHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEE
Q 031262 86 ----GTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGV 138 (162)
Q Consensus 86 ----~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv 138 (162)
+.+++..+..++|.+.+|.|....-... ....++.+..|+|..
T Consensus 86 ~g~~~~~~~~ln~lg~Da~tlGNHEfd~G~~~----------L~~~~~~~~fp~l~a 132 (341)
T 3gve_A 86 GTKTHPIISVMNALKYDAGTLGNHEFNYGLDF----------LDGTIKGADFPIVNA 132 (341)
T ss_dssp TSSCCHHHHHHHHTTCCBEECCGGGGTTCHHH----------HHHHHHTCSSCEECS
T ss_pred cccccHHHHHHHhhCCCeeeccchhhccCHHH----------HHHHHHhcCCCEEEE
Confidence 2467788899999999998864311111 145567788888763
No 171
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=36.19 E-value=98 Score=20.82 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=48.4
Q ss_pred CCcEEEEEeCCChhh---HHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEE
Q 031262 1 MRKRVMVVVDQTSHS---KHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEA 77 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s---~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 77 (162)
||+..+++-.|.+-. ...++.|.+++ +++++.=..++.. .+ .-..++-.+.++..... ++ +.+
T Consensus 4 mm~i~i~~GsFDPiH~GHl~li~~A~~~~----d~viv~v~~~~~K-----~~-~~~~~~R~~m~~~~~~~--~~--v~V 69 (162)
T 4f3r_A 4 MKPIAIYPGTFDPLTNGHVDIIERALPLF----NKIIVACAPTSRK-----DP-HLKLEERVNLIADVLTD--ER--VEV 69 (162)
T ss_dssp -CCEEEEEECCTTCCHHHHHHHHHHGGGC----SEEEEEECCC------------CCHHHHHHHHHHHCCC--TT--EEE
T ss_pred ceEEEEEEEEcCCCCHHHHHHHHHHHHHC----CcEEEEEecCCcc-----CC-CCCHHHHHHHHHHhhCC--CC--EEE
Confidence 778888888887743 44666666654 5654432222211 00 01123333333333221 33 333
Q ss_pred EEEecCchhHHHHHHHhcCCCEEEEccCCCCccc
Q 031262 78 LVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFI 111 (162)
Q Consensus 78 ~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~ 111 (162)
...+| ..++++++.++|.+|.|.+..+.+.
T Consensus 70 ~~~~~----l~~~~~~~~~~~~~v~G~r~~~Df~ 99 (162)
T 4f3r_A 70 LPLTG----LLVDFAKTHQANFILRGLRAVSDFD 99 (162)
T ss_dssp EECCS----CHHHHHHHTTCCEEEEEECSHHHHH
T ss_pred Eeccc----hHHHHHHHcCCCEEEECCCchhhhh
Confidence 33232 4568899999999999987654443
No 172
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=35.61 E-value=83 Score=23.50 Aligned_cols=50 Identities=12% Similarity=0.087 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCC-ceEEEEecCC
Q 031262 87 TVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKAD-CLTVGVRKQS 142 (162)
Q Consensus 87 ~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~-~pVlvv~~~~ 142 (162)
.+.+.|++.++|-+++-........ +-+.- .- +.|...++ .||++..-+.
T Consensus 97 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~-~f-----~~va~a~~~lPiilYn~P~ 148 (303)
T 2wkj_A 97 QLAASAKRYGFDAVSAVTPFYYPFSFEEHCD-HY-----RAIIDSADGLPMVVYNIPA 148 (303)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHH-HH-----HHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHhCCCCEEEecCCCCCCCCHHHHHH-HH-----HHHHHhCCCCCEEEEeCcc
Confidence 3467788999999988876432111 11111 11 45677778 9999987553
No 173
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=35.54 E-value=1e+02 Score=23.20 Aligned_cols=81 Identities=7% Similarity=-0.096 Sum_probs=44.1
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCccc-ccccccCCcchhHHHhhhhCCc
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFI-NCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
+..+.++...+.....+.+-.-+...+. .-.+.+.+++.++|-+++-........ +-+.. .- +.|...++.
T Consensus 76 Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~-~f-----~~va~a~~l 149 (315)
T 3si9_A 76 EHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYT-HF-----SSIAKAISI 149 (315)
T ss_dssp HHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHH-HH-----HHHHHHCSS
T ss_pred HHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHH-HH-----HHHHHcCCC
Confidence 3333344444433334444333322233 344557888999999999875432211 11111 11 567788899
Q ss_pred eEEEEecCCC
Q 031262 134 LTVGVRKQSK 143 (162)
Q Consensus 134 pVlvv~~~~~ 143 (162)
||++..-+..
T Consensus 150 PiilYn~P~~ 159 (315)
T 3si9_A 150 PIIIYNIPSR 159 (315)
T ss_dssp CEEEEECHHH
T ss_pred CEEEEeCchh
Confidence 9999876543
No 174
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=35.50 E-value=73 Score=19.15 Aligned_cols=70 Identities=17% Similarity=0.122 Sum_probs=40.0
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEE
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTV 136 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVl 136 (162)
...+.++..... .+..+. . ..+ .+...+..++..+|+|++...-.+. . | -++++.+-...++|++
T Consensus 13 ~~~~~l~~~L~~--~g~~v~--~-~~~-~~~al~~~~~~~~dlii~D~~~p~~-~----g----~~~~~~lr~~~~~~ii 77 (120)
T 3f6p_A 13 PIADILEFNLRK--EGYEVH--C-AHD-GNEAVEMVEELQPDLILLDIMLPNK-D----G----VEVCREVRKKYDMPII 77 (120)
T ss_dssp HHHHHHHHHHHH--TTCEEE--E-ESS-HHHHHHHHHTTCCSEEEEETTSTTT-H----H----HHHHHHHHTTCCSCEE
T ss_pred HHHHHHHHHHHh--CCEEEE--E-eCC-HHHHHHHHhhCCCCEEEEeCCCCCC-C----H----HHHHHHHHhcCCCCEE
Confidence 344555555555 344332 2 233 3445567778899999998764331 1 1 1222555555678998
Q ss_pred EEecC
Q 031262 137 GVRKQ 141 (162)
Q Consensus 137 vv~~~ 141 (162)
++...
T Consensus 78 ~~t~~ 82 (120)
T 3f6p_A 78 MLTAK 82 (120)
T ss_dssp EEEES
T ss_pred EEECC
Confidence 88654
No 175
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=35.13 E-value=1.5e+02 Score=22.50 Aligned_cols=49 Identities=12% Similarity=0.229 Sum_probs=28.8
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.+.+.+.+.+...+ .+++++..-......+.+.+... ++|.||+|+.-.
T Consensus 270 T~~la~~i~~~l~~--~g~~v~~~~~~~~~~~~~~~~l~--~~d~iiigsP~y 318 (404)
T 2ohh_A 270 TRKMAHAIAEGAMS--EGVDVRVYCLHEDDRSEIVKDIL--ESGAIALGAPTI 318 (404)
T ss_dssp HHHHHHHHHHHHHT--TTCEEEEEETTTSCHHHHHHHHH--TCSEEEEECCEE
T ss_pred HHHHHHHHHHHHHh--CCCeEEEEECCCCCHHHHHHHHH--HCCEEEEECccc
Confidence 45666666655554 45555544333333455555555 679999999743
No 176
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=34.73 E-value=1.9e+02 Score=23.68 Aligned_cols=90 Identities=10% Similarity=0.076 Sum_probs=54.5
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQ 81 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~ 81 (162)
.+++++++.+.-+|.-++..+.+. .|.+++.+|+...... ..+..+..+.+++.+ ++++..+.-..
T Consensus 255 ~~~vvvalSGGvDSsv~a~ll~~~---~G~~v~~v~vd~g~~~----------~~e~~~~~~~~~~~l-~gi~~~~vd~~ 320 (556)
T 3uow_A 255 DHYVIAAMSGGIDSTVAAAYTHKI---FKERFFGIFIDNGLLR----------KNEAENVYTFLKSTF-PDMNITKIDAS 320 (556)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECSCSC----------TTHHHHHHHHHHHHC-TTSEEEEEECH
T ss_pred CceEEEEcccCCCHHHHHHHHHHH---hCCeEEEEEEecCCCC----------hHHHHHHHHHHHHhc-CCCCeEEeccH
Confidence 468999999988887777666543 2567999998644321 234444445566652 15554433221
Q ss_pred ----------cCc-----------hhHHHHHHHhcCC----CEEEEccC
Q 031262 82 ----------GPK-----------LGTVMSQVRKLEV----SVLVLGQK 105 (162)
Q Consensus 82 ----------g~~-----------~~~I~~~a~~~~~----dliVmG~~ 105 (162)
.++ .+...++|++.+. |.++.|+.
T Consensus 321 ~~f~~~l~g~~~pe~kr~iig~~f~~vf~~~A~~~~~~~~~~~la~Gt~ 369 (556)
T 3uow_A 321 ENFLSNLQGVTDPEQKRKIIGKLFIEEFEKAVNNIDIDINKTFLLQGTL 369 (556)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHTTCCCGGGEEEECCCC
T ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHcCCcccccccccCcc
Confidence 111 1223567777775 89999874
No 177
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=34.69 E-value=1.2e+02 Score=21.44 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=45.7
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..++.+.+++.+.+ .+.++.+....+++ ....++...+.++|-||+........... -.-+...+
T Consensus 23 ~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~-----------~~~~~~~~ 89 (293)
T 3l6u_A 23 AQRLINAFKAEAKA--NKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSA-----------IEEAKKAG 89 (293)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHH-----------HHHHHHTT
T ss_pred HHHHHHHHHHHHHH--cCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHH-----------HHHHHHcC
Confidence 45666777777777 46666554444444 23456666678899998865432221111 12345579
Q ss_pred ceEEEEecCCC
Q 031262 133 CLTVGVRKQSK 143 (162)
Q Consensus 133 ~pVlvv~~~~~ 143 (162)
+||+.+.....
T Consensus 90 iPvV~~~~~~~ 100 (293)
T 3l6u_A 90 IPVFAIDRMIR 100 (293)
T ss_dssp CCEEEESSCCC
T ss_pred CCEEEecCCCC
Confidence 99999976544
No 178
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=34.43 E-value=1.3e+02 Score=21.56 Aligned_cols=76 Identities=13% Similarity=0.054 Sum_probs=43.5
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEe--cCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhh
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQ--GPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKK 130 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~--g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~ 130 (162)
..++.+.+++.+.+ .|.++.+.... +++ ....++.....++|-||+........... -.-+..
T Consensus 18 ~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~-----------~~~~~~ 84 (297)
T 3rot_A 18 WTSLFQGAKKAAEE--LKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKS-----------LQRANK 84 (297)
T ss_dssp HHHHHHHHHHHHHH--HTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHHH--hCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHH-----------HHHHHH
Confidence 45666667777776 45555443322 243 23455556667899999866543322211 123455
Q ss_pred CCceEEEEecCCC
Q 031262 131 ADCLTVGVRKQSK 143 (162)
Q Consensus 131 ~~~pVlvv~~~~~ 143 (162)
..+||+.+.....
T Consensus 85 ~giPvV~~~~~~~ 97 (297)
T 3rot_A 85 LNIPVIAVDTRPK 97 (297)
T ss_dssp HTCCEEEESCCCS
T ss_pred CCCCEEEEcCCCc
Confidence 7899999966544
No 179
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=34.37 E-value=84 Score=23.29 Aligned_cols=79 Identities=11% Similarity=-0.055 Sum_probs=43.0
Q ss_pred HHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcc-cccccccCCcchhHHHhhhhCCceE
Q 031262 59 ANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAF-INCFCGTSSSEEFVDQCIKKADCLT 135 (162)
Q Consensus 59 ~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~-~~~~~Gs~~~~~~~~~v~~~~~~pV 135 (162)
.+.++...+.....+.+-.-+...+. .-.+.+.|++.++|-+++-....... .+-+..- - +.|...++.||
T Consensus 58 ~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~-f-----~~ia~a~~lPi 131 (292)
T 3daq_A 58 ELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKH-F-----EAIADAVKLPV 131 (292)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHH-H-----HHHHHHHCSCE
T ss_pred HHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHH-H-----HHHHHhCCCCE
Confidence 33344443333344555443322233 34445778899999999887543221 1111111 1 56777789999
Q ss_pred EEEecCCC
Q 031262 136 VGVRKQSK 143 (162)
Q Consensus 136 lvv~~~~~ 143 (162)
++..-+..
T Consensus 132 ilYn~P~~ 139 (292)
T 3daq_A 132 VLYNVPSR 139 (292)
T ss_dssp EEEECHHH
T ss_pred EEEecccc
Confidence 98866543
No 180
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=34.10 E-value=1.2e+02 Score=21.36 Aligned_cols=75 Identities=8% Similarity=-0.129 Sum_probs=42.7
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
.++.+.+++.+.+ .+.++.+....+++ ....++.....++|-||+........... -.-+...++
T Consensus 21 ~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~-----------~~~~~~~~i 87 (291)
T 3l49_A 21 LKAYQAQIAEIER--LGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPW-----------LQKINDAGI 87 (291)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHH-----------HHHHHHTTC
T ss_pred HHHHHHHHHHHHH--cCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHH-----------HHHHHHCCC
Confidence 4566667777776 46555544434444 24455666667889888765431111111 123455789
Q ss_pred eEEEEecCCC
Q 031262 134 LTVGVRKQSK 143 (162)
Q Consensus 134 pVlvv~~~~~ 143 (162)
||+.+.....
T Consensus 88 PvV~~~~~~~ 97 (291)
T 3l49_A 88 PLFTVDTATP 97 (291)
T ss_dssp CEEEESCCCT
T ss_pred cEEEecCCCC
Confidence 9888866543
No 181
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=33.91 E-value=1.3e+02 Score=21.70 Aligned_cols=76 Identities=7% Similarity=-0.012 Sum_probs=45.8
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCch--hHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPKL--GTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~--~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..++.+.+++.+.+ .+.++.+....+++. ...++.....++|-||+........... -.-+....
T Consensus 18 ~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~-----------~~~~~~~g 84 (330)
T 3uug_A 18 WIDDGNNIVKQLQE--AGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDV-----------LKQAGEQG 84 (330)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHH-----------HHHHHHTT
T ss_pred HHHHHHHHHHHHHH--cCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHH-----------HHHHHHCC
Confidence 45667777777777 566665554445542 3445555566899999876542211111 12355679
Q ss_pred ceEEEEecCCC
Q 031262 133 CLTVGVRKQSK 143 (162)
Q Consensus 133 ~pVlvv~~~~~ 143 (162)
+||+.+.....
T Consensus 85 iPvV~~~~~~~ 95 (330)
T 3uug_A 85 IKVIAYDRLIR 95 (330)
T ss_dssp CEEEEESSCCC
T ss_pred CCEEEECCCCC
Confidence 99999976544
No 182
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=33.85 E-value=64 Score=25.10 Aligned_cols=77 Identities=6% Similarity=0.082 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHH
Q 031262 14 HSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVR 93 (162)
Q Consensus 14 ~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~ 93 (162)
.+++..++|.+.|.+.+.+|+++|=-.... ...-..+..++.+++ .+++.++...+ .+..-.++.-=+
T Consensus 168 ~~eRIar~AFe~A~~rrkkVT~v~KaNvl~----------t~glf~~~~~eva~e-ypdV~~~~~~V-D~~am~lv~~P~ 235 (361)
T 3udu_A 168 EIERIARIAFESARIRKKKVHLIDKANVLA----------SSILWREVVANVAKD-YQDINLEYMYV-DNAAMQIVKNPS 235 (361)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEECTTTCH----------HHHHHHHHHHHHGGG-CTTSEEEEEEH-HHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEECchhhc----------cchHHHHHHHHHHHH-CCCCeEEeeeH-HHHHHHHHhCcc
Confidence 567778888888877678899998432220 112333445565555 37787776553 222334444333
Q ss_pred hcCCCEEEEcc
Q 031262 94 KLEVSVLVLGQ 104 (162)
Q Consensus 94 ~~~~dliVmG~ 104 (162)
+.|.||+..
T Consensus 236 --~FDViVt~N 244 (361)
T 3udu_A 236 --IFDVMLCSN 244 (361)
T ss_dssp --GCSEEEECH
T ss_pred --cCcEEEecc
Confidence 468777654
No 183
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=33.40 E-value=1.3e+02 Score=21.24 Aligned_cols=73 Identities=12% Similarity=0.042 Sum_probs=45.4
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..++.+.+++.+.+ .|.++.+....++. ...+++.....++|-||+..... .. . -.-+....
T Consensus 22 ~~~~~~gi~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~~------~-----~~~l~~~~ 85 (276)
T 3jy6_A 22 STELFKGISSILES--RGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---PQ------T-----VQEILHQQ 85 (276)
T ss_dssp HHHHHHHHHHHHHT--TTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---HH------H-----HHHHHTTS
T ss_pred HHHHHHHHHHHHHH--CCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---HH------H-----HHHHHHCC
Confidence 35666666777666 46555554444444 34567777788899988876543 11 1 22356679
Q ss_pred ceEEEEecCCC
Q 031262 133 CLTVGVRKQSK 143 (162)
Q Consensus 133 ~pVlvv~~~~~ 143 (162)
+||+.+.....
T Consensus 86 iPvV~i~~~~~ 96 (276)
T 3jy6_A 86 MPVVSVDREMD 96 (276)
T ss_dssp SCEEEESCCCT
T ss_pred CCEEEEecccC
Confidence 99999866543
No 184
>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}
Probab=33.34 E-value=1.4e+02 Score=23.91 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=52.5
Q ss_pred EEEEEEEeCCCCCCCCCCC----c--c----ccchHHHHHHHHhHHHhCCCCeEEEEEEecCc-----------hhHHHH
Q 031262 32 LLTLLHVVPPPKPNTSHHD----S--S----ACCPYLANSLGSLCKACKPEVEVEALVIQGPK-----------LGTVMS 90 (162)
Q Consensus 32 ~l~l~hv~~~~~~~~~~~~----~--~----~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~-----------~~~I~~ 90 (162)
+|+++|.-+-+....+... . . --..++...++++.++ .++ ...+-.||. .+.+++
T Consensus 3 ~LtILhtnD~Hg~l~~~~~~~~~~~~~~~~~GG~arlat~i~~~r~~-~~n---~llldaGD~~qGs~~~~~~~g~~~i~ 78 (530)
T 4h1s_A 3 ELTILHTNDVHSRLEQTSEDSSKCVNASRCMGGVARLFTKVQQIRRA-EPN---VLLLDAGDQYQGTIWFTVYKGAEVAH 78 (530)
T ss_dssp EEEEEEECCCTTCCSCBCTTSSBCCSTTSCBCCHHHHHHHHHHHHHH-CSS---EEEEECSCCSCSSHHHHHHTTHHHHH
T ss_pred EEEEEEEcccccCCcccCcccccccccccccCcHHHHHHHHHHHHhh-CcC---eEEEEeCCcccchHHHHHhCChHHHH
Confidence 5889999876543321111 0 0 1234455555655554 232 233434552 456778
Q ss_pred HHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEE
Q 031262 91 QVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGV 138 (162)
Q Consensus 91 ~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv 138 (162)
..+..++|..++|.|....-...+ . +.++..+..|+|..
T Consensus 79 ~mN~lgyDa~~lGNHEFd~G~~~l----~-----~~~~~~a~fp~L~a 117 (530)
T 4h1s_A 79 FMNALRYDAMALGNHEFDNGVEGL----I-----EPLLKEAKFPILSA 117 (530)
T ss_dssp HHHHTTCCEEECCGGGGTTTTHHH----H-----TTTTTTCSSCEECT
T ss_pred HHhccCCCEEEEchhhhccCHHHH----H-----HHHHhhCCCCEEEE
Confidence 899999999999999643111111 1 33456677777754
No 185
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=32.97 E-value=1.3e+02 Score=21.33 Aligned_cols=74 Identities=3% Similarity=-0.027 Sum_probs=42.8
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..++.+.+++.+.+ .+..+.+....++. ...+.+...+.++|-||+....... +. -..+...+
T Consensus 25 ~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------------~~-~~~l~~~~ 89 (288)
T 3gv0_A 25 TSQMVFGITEVLST--TQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND------------PR-VRFMTERN 89 (288)
T ss_dssp HHHHHHHHHHHHTT--SSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC------------HH-HHHHHHTT
T ss_pred HHHHHHHHHHHHHH--cCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc------------HH-HHHHhhCC
Confidence 45666666666665 45444433323332 4566777777889988875432110 01 22355679
Q ss_pred ceEEEEecCCC
Q 031262 133 CLTVGVRKQSK 143 (162)
Q Consensus 133 ~pVlvv~~~~~ 143 (162)
+||+++.....
T Consensus 90 iPvV~i~~~~~ 100 (288)
T 3gv0_A 90 MPFVTHGRSDM 100 (288)
T ss_dssp CCEEEESCCCS
T ss_pred CCEEEECCcCC
Confidence 99999876543
No 186
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=32.93 E-value=47 Score=25.51 Aligned_cols=50 Identities=12% Similarity=0.217 Sum_probs=34.1
Q ss_pred chhHHHHHHHhcCCCEEEEccCCC-Cc-ccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 84 KLGTVMSQVRKLEVSVLVLGQKKH-SA-FINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 84 ~~~~I~~~a~~~~~dliVmG~~~~-~~-~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
+....++.++ ++|+||+|-... +. +..+++.... +. ++.++||++.|.+-
T Consensus 167 ~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~-----~A-i~~s~A~kV~v~N~ 218 (332)
T 2ppv_A 167 PMNEAIEALE--QADLIVLGPGSLYTSVISNLCVKGIS-----EA-LLRTSAPKLYVSNV 218 (332)
T ss_dssp CCHHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHH-----HH-HHHCCSCEEEECCS
T ss_pred CCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHH-----HH-HHhCCCCEEEEcCC
Confidence 3677888888 679999998653 22 2333333332 44 67799999999874
No 187
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=32.88 E-value=57 Score=22.31 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=26.6
Q ss_pred CCcEEEEEeCCC----hhhHHHHHHHHHh-ccCCCCEEEEEEEeC
Q 031262 1 MRKRVMVVVDQT----SHSKHAMMWALTH-VTNKGDLLTLLHVVP 40 (162)
Q Consensus 1 m~~~Ilv~vD~S----~~s~~al~~A~~~-a~~~~~~l~l~hv~~ 40 (162)
||.+|++-. +| ..+....+++.+. +...+.++.++.+.+
T Consensus 1 mMmkilii~-gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~ 44 (197)
T 2vzf_A 1 MTYSIVAIS-GSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVID 44 (197)
T ss_dssp CCEEEEEEE-CCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGG
T ss_pred CCceEEEEE-CCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 667776655 44 3567788888776 666677888887643
No 188
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=32.86 E-value=80 Score=24.96 Aligned_cols=77 Identities=9% Similarity=0.127 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHH
Q 031262 14 HSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVR 93 (162)
Q Consensus 14 ~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~ 93 (162)
.+++..++|.++|.+.+.+|+++|=-.... ...-..+..++..++ .+++.++...+ .+..-.++.-=+
T Consensus 208 ~~eRIar~AFe~A~~rrkkVT~v~KaNVlk----------~sglf~~~~~eva~e-YPdV~~~~~~V-D~~amqLV~~P~ 275 (405)
T 3r8w_A 208 EIDRIARVAFETARKRRGKLCSVDKANVLE----------ASILWRKRVTALASE-YPDVELSHMYV-DNAAMQLVRDPK 275 (405)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEECTTTCH----------HHHHHHHHHHHHGGG-STTSEEEEEEH-HHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEECchhhc----------cccHHHHHHHHHHhH-CCCCeEEeeeH-HHHHHHHHhChh
Confidence 567788888888877778899998432221 112333445555555 36777775553 222334443333
Q ss_pred hcCCCEEEEcc
Q 031262 94 KLEVSVLVLGQ 104 (162)
Q Consensus 94 ~~~~dliVmG~ 104 (162)
+.|.||+..
T Consensus 276 --~FDViVt~N 284 (405)
T 3r8w_A 276 --QFDTIVTNN 284 (405)
T ss_dssp --GCSEEEECH
T ss_pred --hCcEEeecc
Confidence 458777654
No 189
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=32.73 E-value=75 Score=24.99 Aligned_cols=77 Identities=13% Similarity=0.164 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHH
Q 031262 14 HSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVR 93 (162)
Q Consensus 14 ~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~ 93 (162)
.+++..++|.++|.+.+.+|+++|=-... . ...-..+..++.+++ .+++.++...+ .+..-.++.-=+
T Consensus 187 ~~eRIar~AFe~A~~rrkkVT~v~KaNVl-~---------t~glfr~~~~eva~e-YPdV~~~~~~V-D~~amqLV~~P~ 254 (390)
T 3u1h_A 187 EIERIIRKAFELALTRKKKVTSVDKANVL-E---------SSRLWREVAEEVAKE-YPDVELEHMLV-DNAAMQLIRNPR 254 (390)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEECTTTC-H---------HHHHHHHHHHHHHTT-CTTSEEEEEEH-HHHHHHHHHCGG
T ss_pred HHhHHHHHHHHHHHHcCCceEEEECCccc-c---------cchHHHHHHHHHHhH-CCCCeEEeeeH-HHHHHHHHhCcc
Confidence 56788888888888778899999843322 1 112233445555554 37787776653 222344444333
Q ss_pred hcCCCEEEEcc
Q 031262 94 KLEVSVLVLGQ 104 (162)
Q Consensus 94 ~~~~dliVmG~ 104 (162)
+.|.||+..
T Consensus 255 --~FDViVt~N 263 (390)
T 3u1h_A 255 --QFDVIVTEN 263 (390)
T ss_dssp --GCSEEEECH
T ss_pred --cCcEEEecc
Confidence 458777654
No 190
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=32.71 E-value=39 Score=24.01 Aligned_cols=125 Identities=10% Similarity=0.036 Sum_probs=62.8
Q ss_pred CcEEEEEeCCChhhHH-HHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEE
Q 031262 2 RKRVMVVVDQTSHSKH-AMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVI 80 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~-al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~ 80 (162)
+++|++++.||-.... +++..-.+. +.|.++.++-.-.-......+. ...+....++.+... . +
T Consensus 5 ~k~IllgiTGsiaayk~~~~ll~~L~-~~g~eV~vv~T~~A~~vl~~f~----~~~~~~~~l~~ltg~---~--v----- 69 (207)
T 3mcu_A 5 GKRIGFGFTGSHCTYEEVMPHLEKLI-AEGAEVRPVVSYTVQSTNTRFG----EGAEWIKKIEEITGF---K--A----- 69 (207)
T ss_dssp TCEEEEEECSCGGGGTTSHHHHHHHH-HTTCEEEEEECC----------------CHHHHHHHHHSSS---C--C-----
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHHH-hCCCEEEEEEehHHHHHHHHhc----CchhHHHHHHHHhCC---c--e-----
Confidence 4789999999976665 777766654 4578877665321110000000 001111223322211 1 1
Q ss_pred ecCchhHHHHHHH-hcCCCEEEEccCCCCcccccccccCCcchhHHH---hhhhCCceEEEEecCCCCC
Q 031262 81 QGPKLGTVMSQVR-KLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQ---CIKKADCLTVGVRKQSKGM 145 (162)
Q Consensus 81 ~g~~~~~I~~~a~-~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~---v~~~~~~pVlvv~~~~~~~ 145 (162)
..+..+ . +.+. ...+|++|+.--..+.+.++-.|-..+ .+.. +.-..++||++++..+..+
T Consensus 70 ~~~~~~-~-~hi~ls~~aD~mvIaPaTanTlAKiA~GiaDn--Llt~aa~~~L~~~~plvlaPamn~~m 134 (207)
T 3mcu_A 70 INSIVG-A-EPLGPKIPLDCMVIAPLTGNSMSKFANAMTDS--PVLMAAKATLRNGKPVVLAVSTNDAL 134 (207)
T ss_dssp BCSHHH-H-GGGTTTSCCSEEEEEEECHHHHHHHHTTCCCS--HHHHHHHHHHHTTCCEEEEEEETTTT
T ss_pred EeecCc-c-cccccchhcCEEEEecCCHHHHHHHHccccCc--HHHHHHHHHHhcCCCEEEEECCChhH
Confidence 011111 1 1111 567899999876666666665564441 1122 2234689999998755444
No 191
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=32.10 E-value=59 Score=23.64 Aligned_cols=66 Identities=9% Similarity=0.069 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEEecCC----CCCCcEEEec--eeeceeee
Q 031262 87 TVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQS----KGMGGYIIST--RWQKNFWL 160 (162)
Q Consensus 87 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~~----~~~~~~~~~~--~~~~~~~~ 160 (162)
..++.+.+.+.|.|.+|.+..-...+.+ ++++.+-+ .+.|+++.+... ..-.++++.+ ++-+.+|+
T Consensus 27 ~~l~~~~~~GtDaI~vGgs~gvt~~~~~-------~~v~~ik~-~~~Piil~p~~~~~~~~gaD~il~pslln~~~~~~i 98 (235)
T 3w01_A 27 DDLDAICMSQTDAIMIGGTDDVTEDNVI-------HLMSKIRR-YPLPLVLEISNIESVMPGFDFYFVPTVLNSTDVAFH 98 (235)
T ss_dssp HHHHHHHTSSCSEEEECCSSCCCHHHHH-------HHHHHHTT-SCSCEEEECCCSTTCCTTCSEEEEEEETTBSSGGGT
T ss_pred HHHHHHHHcCCCEEEECCcCCcCHHHHH-------HHHHHhcC-cCCCEEEecCCHHHhhcCCCEEEEccccCCCCcchh
Confidence 4556677889999999996422222211 12244444 889999987642 1123666655 34555664
No 192
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=32.04 E-value=79 Score=24.62 Aligned_cols=77 Identities=9% Similarity=0.109 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHH
Q 031262 14 HSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVR 93 (162)
Q Consensus 14 ~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~ 93 (162)
.+++..++|.+.|.+.+.+|+++|=-.... ...-..+..++.+++ .++++++...+ .+..-.++.-=+
T Consensus 175 ~~eRIar~AFe~A~~rrkkVt~v~KaNvlk----------t~glf~~~~~eva~e-ypdV~~~~~~V-D~~~mqlv~~P~ 242 (366)
T 1vlc_A 175 TVERIARTAFEIAKNRRKKVTSVDKANVLY----------SSMLWRKVVNEVARE-YPDVELTHIYV-DNAAMQLILKPS 242 (366)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEECTTTCH----------HHHHHHHHHHHHHTT-CTTSEEEEEEH-HHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEECCcccc----------cchHHHHHHHHHHHH-CCCceEEeeeH-HHHHHHHhhCcc
Confidence 567888889888887778899999543331 112333445566555 36777776653 222344444434
Q ss_pred hcCCCEEEEcc
Q 031262 94 KLEVSVLVLGQ 104 (162)
Q Consensus 94 ~~~~dliVmG~ 104 (162)
+.|.||...
T Consensus 243 --~FDVivt~N 251 (366)
T 1vlc_A 243 --QFDVILTTN 251 (366)
T ss_dssp --GCSEEEECH
T ss_pred --cceEEEEcc
Confidence 458777655
No 193
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=31.88 E-value=80 Score=22.52 Aligned_cols=32 Identities=9% Similarity=0.190 Sum_probs=20.0
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEe
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
.+++++.|++. ...+++++-+ .+..+..+|+-
T Consensus 13 ~~lilAlD~~~-~~~a~~~v~~----~~~~v~~~Kvg 44 (228)
T 3m47_A 13 NRLILAMDLMN-RDDALRVTGE----VREYIDTVKIG 44 (228)
T ss_dssp GGEEEECCCCS-HHHHHHHHHT----TTTTCSEEEEE
T ss_pred CCeEEEeCCCC-HHHHHHHHHH----cCCcccEEEEc
Confidence 57999999985 3555555543 34445566663
No 194
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=31.75 E-value=91 Score=21.35 Aligned_cols=73 Identities=10% Similarity=-0.069 Sum_probs=42.1
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhh--hCCce
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIK--KADCL 134 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~--~~~~p 134 (162)
...+.++...... .+ +.+.....+..+++...+++..+|+|++.-.-++. -| -++++.+-. ...+|
T Consensus 18 ~~~~~l~~~L~~~-~~--~~v~~~~~~~~~~~~~~~~~~~~dlvllD~~mp~~-----~G----~~~~~~lr~~~~~~~~ 85 (225)
T 3klo_A 18 MQSRLLKEALESK-LP--LALEITPFSELWLEENKPESRSIQMLVIDYSRISD-----DV----LTDYSSFKHISCPDAK 85 (225)
T ss_dssp HHHHHHHHHHHHH-SS--EEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCH-----HH----HHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHHhhC-CC--ceEEEEeCCcHHHHHHHhhccCCCEEEEeCCCCCC-----CH----HHHHHHHHHhhCCCCc
Confidence 4445555555531 34 33333335566667666778889999998764331 11 122245544 45799
Q ss_pred EEEEecC
Q 031262 135 TVGVRKQ 141 (162)
Q Consensus 135 Vlvv~~~ 141 (162)
|+++...
T Consensus 86 ii~lt~~ 92 (225)
T 3klo_A 86 EVIINCP 92 (225)
T ss_dssp EEEEEEC
T ss_pred EEEEECC
Confidence 9998654
No 195
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=31.66 E-value=1.1e+02 Score=22.65 Aligned_cols=80 Identities=9% Similarity=-0.086 Sum_probs=43.3
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCchh--HHHHHHHhcCCCEEEEccCCCCc-c-cccccccCCcchhHHHhhhhC-
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPKLG--TVMSQVRKLEVSVLVLGQKKHSA-F-INCFCGTSSSEEFVDQCIKKA- 131 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~--~I~~~a~~~~~dliVmG~~~~~~-~-~~~~~Gs~~~~~~~~~v~~~~- 131 (162)
+..+.++...+.....+.+-.-+...+..+ .+.+.|++.++|-+++-...... . ..-+..- - +.|+..+
T Consensus 57 Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~-f-----~~va~a~p 130 (294)
T 3b4u_A 57 ERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAW-F-----SAVFSKIG 130 (294)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHH-H-----HHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHH-H-----HHHHHhcC
Confidence 333344444443223344444333223344 44677889999999998764332 1 1111111 1 4577777
Q ss_pred --CceEEEEecCC
Q 031262 132 --DCLTVGVRKQS 142 (162)
Q Consensus 132 --~~pVlvv~~~~ 142 (162)
+.||++..-+.
T Consensus 131 ~~~lPiilYn~P~ 143 (294)
T 3b4u_A 131 KDARDILVYNIPS 143 (294)
T ss_dssp TTCCCEEEEECHH
T ss_pred CCCCcEEEEECcc
Confidence 89999987554
No 196
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=31.33 E-value=82 Score=24.47 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHH
Q 031262 14 HSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVR 93 (162)
Q Consensus 14 ~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~ 93 (162)
.+++..++|.+.|.+.+.+|+++|=-.... ...-..+..++..++ .+++.++...+ .+..-.++.-=.
T Consensus 171 ~~eRiar~AFe~A~~rrkkVt~v~KaNvlk----------~~~lf~~~~~eva~e-ypdI~~~~~~v-D~~~m~lv~~P~ 238 (363)
T 1cnz_A 171 EIERIARIAFESARKRRRKVTSIDKANVLQ----------SSILWREIVNDVAKT-YPDVELAHMYI-DNATMQLIKDPS 238 (363)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEECTTTCH----------HHHHHHHHHHHHHTT-CTTSEEEEEEH-HHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEECCcccc----------cchhHHHHHHHHHHH-CCCceEeeeeH-HHHHHHHhhCcc
Confidence 567888888888887778899999543331 112233445555544 36777775553 222333443333
Q ss_pred hcCCCEEEEcc
Q 031262 94 KLEVSVLVLGQ 104 (162)
Q Consensus 94 ~~~~dliVmG~ 104 (162)
+.|.||+..
T Consensus 239 --~FDVivt~N 247 (363)
T 1cnz_A 239 --QFDVLLCSN 247 (363)
T ss_dssp --GCSEEEECH
T ss_pred --cceEEEECC
Confidence 458777654
No 197
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=31.14 E-value=45 Score=22.75 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=27.8
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEe
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
+.+++.+..|..+...++ +++.|++.|+++..+.-.
T Consensus 114 ~DvvI~iS~SG~t~~~i~-~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 114 GDVLLAISTSGNSANVIQ-AIQAAHDREMLVVALTGR 149 (199)
T ss_dssp TCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEECT
T ss_pred CCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEECC
Confidence 468899999988888876 446788888888777643
No 198
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=30.97 E-value=1.3e+02 Score=20.69 Aligned_cols=95 Identities=16% Similarity=0.110 Sum_probs=54.6
Q ss_pred CCcEEEEEeCCChhh---HHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEE
Q 031262 1 MRKRVMVVVDQTSHS---KHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEA 77 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s---~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 77 (162)
+|+..+++-.|++.. ...++.|.+++ ++|+++=..++... + .-..++-.+.++..+.. .+++.+
T Consensus 20 ~mki~i~~GsFDPiH~GHl~ii~~A~~~~----D~Viv~v~~np~K~-----~-~~s~eeR~~mv~~a~~~-~~~v~V-- 86 (177)
T 3nbk_A 20 HMTGAVCPGSFDPVTLGHVDIFERAAAQF----DEVVVAILVNPAKT-----G-MFDLDERIAMVKESTTH-LPNLRV-- 86 (177)
T ss_dssp CCCEEEEEECCTTCCHHHHHHHHHHHHHS----SEEEEEECCCTTSC-----C-SSCHHHHHHHHHHHCTT-CTTEEE--
T ss_pred CCEEEEEEEeeCCCCHHHHHHHHHHHHHC----CEEEEEEcCCCCCC-----C-CCCHHHHHHHHHHHhCC-CCCEEE--
Confidence 367778888887743 55677777765 66665432222110 1 11223334444443332 244333
Q ss_pred EEEecCchhHHHHHHHhcCCCEEEEccCCCCcccc
Q 031262 78 LVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFIN 112 (162)
Q Consensus 78 ~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~ 112 (162)
.-.+ .-.++++++.+++.+|.|-+..+.++.
T Consensus 87 ~~~e----~l~vd~~~~~~a~~ivrGlr~~~Dfey 117 (177)
T 3nbk_A 87 QVGH----GLVVDFVRSCGMTAIVKGLRTGTDFEY 117 (177)
T ss_dssp EECC----SCHHHHHHHTTCCEEEEEECTTCCHHH
T ss_pred EecC----chHHHHHHHcCCCEEEECCCchhHHHH
Confidence 2223 357899999999999999887766653
No 199
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=30.55 E-value=1.1e+02 Score=19.72 Aligned_cols=45 Identities=4% Similarity=-0.042 Sum_probs=31.2
Q ss_pred HHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCC
Q 031262 61 SLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 61 ~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
.+..+.+. .|.++.- +...-+.+.+++.+.+.++|+|.+.+....
T Consensus 22 ~v~~~l~~--~G~~Vi~-lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~ 66 (137)
T 1ccw_A 22 ILDHAFTN--AGFNVVN-IGVLSPQELFIKAAIETKADAILVSSLYGQ 66 (137)
T ss_dssp HHHHHHHH--TTCEEEE-EEEEECHHHHHHHHHHHTCSEEEEEECSST
T ss_pred HHHHHHHH--CCCEEEE-CCCCCCHHHHHHHHHhcCCCEEEEEecCcC
Confidence 44455555 5644431 223456899999999999999999997644
No 200
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=30.44 E-value=1.3e+02 Score=22.50 Aligned_cols=45 Identities=9% Similarity=-0.086 Sum_probs=21.2
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecC-chhHHHHHHHhcCCCEEEEc
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGP-KLGTVMSQVRKLEVSVLVLG 103 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~-~~~~I~~~a~~~~~dliVmG 103 (162)
+..+.+.+...+ .++++........ ....+.+.+...++|+||+.
T Consensus 42 ~~~~~i~~~L~~--~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~ 87 (337)
T 2qv7_A 42 RELPDALIKLEK--AGYETSAYATEKIGDATLEAERAMHENYDVLIAA 87 (337)
T ss_dssp HHHHHHHHHHHH--TTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEE
T ss_pred HHHHHHHHHHHH--cCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEE
Confidence 444555555555 4555544433322 23344444444556765543
No 201
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=30.30 E-value=1.4e+02 Score=20.97 Aligned_cols=85 Identities=8% Similarity=0.086 Sum_probs=49.2
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEec
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQG 82 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g 82 (162)
+||.|-+.++.....++-.++.. ...+.++.++-..++ .. ..++.+++ .++.+...-...
T Consensus 1 ~ri~vl~Sg~gsnl~ali~~~~~-~~~~~~i~~Vis~~~--~~---------------~~~~~A~~--~gIp~~~~~~~~ 60 (212)
T 1jkx_A 1 MNIVVLISGNGSNLQAIIDACKT-NKIKGTVRAVFSNKA--DA---------------FGLERARQ--AGIATHTLIASA 60 (212)
T ss_dssp CEEEEEESSCCHHHHHHHHHHHT-TSSSSEEEEEEESCT--TC---------------HHHHHHHH--TTCEEEECCGGG
T ss_pred CEEEEEEECCcHHHHHHHHHHHc-CCCCceEEEEEeCCC--ch---------------HHHHHHHH--cCCcEEEeCccc
Confidence 37888888877666666666542 223456555443221 11 12455555 565554321111
Q ss_pred --Cc---hhHHHHHHHhcCCCEEEEccCCC
Q 031262 83 --PK---LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 83 --~~---~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
+. .+.+.+..++.++|++|+...++
T Consensus 61 ~~~r~~~~~~~~~~l~~~~~Dliv~agy~~ 90 (212)
T 1jkx_A 61 FDSREAYDRELIHEIDMYAPDVVVLAGFMR 90 (212)
T ss_dssp CSSHHHHHHHHHHHHGGGCCSEEEESSCCS
T ss_pred ccchhhccHHHHHHHHhcCCCEEEEeChhh
Confidence 10 36788999999999999988753
No 202
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=30.15 E-value=95 Score=24.04 Aligned_cols=77 Identities=9% Similarity=0.143 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHH
Q 031262 14 HSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVR 93 (162)
Q Consensus 14 ~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~ 93 (162)
.+++..++|.+.|.+.+.+|+++|=-.... ...-..+.+++..++ .+++.++...+ .+..-.++.-=.
T Consensus 166 ~~eRiar~AFe~A~~rrkkVt~v~KaNvlk----------~~~lf~~~~~eva~e-ypdI~~~~~~v-D~~~mqlv~~P~ 233 (358)
T 1a05_A 166 EIRRIAHVAFRAAQGRRKQLCSVDKANVLE----------TTRLWREVVTEVARD-YPDVRLSHMYV-DNAAMQLIRAPA 233 (358)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEECTTTCH----------HHHHHHHHHHHHGGG-CTTSEEEEEEH-HHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEECCcccc----------cchhHHHHHHHHHHH-CCCceEEeeeH-HHHHHHHHhCCC
Confidence 567788888888887778899999543321 112333445556554 36777775553 222333443333
Q ss_pred hcCCCEEEEcc
Q 031262 94 KLEVSVLVLGQ 104 (162)
Q Consensus 94 ~~~~dliVmG~ 104 (162)
+.|.||+..
T Consensus 234 --~FDVivt~N 242 (358)
T 1a05_A 234 --QFDVLLTGN 242 (358)
T ss_dssp --GCSEEEECH
T ss_pred --cccEEEecC
Confidence 458777654
No 203
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=30.07 E-value=1.5e+02 Score=21.01 Aligned_cols=74 Identities=12% Similarity=0.011 Sum_probs=45.9
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..++.+.+++.+.+ .+..+.+....+++ ...+++...+.++|-||+...... .. . -.-+....
T Consensus 23 ~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~~------~-----~~~~~~~~ 87 (291)
T 3egc_A 23 FAEVASGVESEARH--KGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEGE--HD------Y-----LRTELPKT 87 (291)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSSC--CH------H-----HHHSSCTT
T ss_pred HHHHHHHHHHHHHH--CCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC--hH------H-----HHHhhccC
Confidence 45666777777777 56666554444444 345677777889999988664321 00 1 22345578
Q ss_pred ceEEEEecCCC
Q 031262 133 CLTVGVRKQSK 143 (162)
Q Consensus 133 ~pVlvv~~~~~ 143 (162)
+||+++.....
T Consensus 88 iPvV~~~~~~~ 98 (291)
T 3egc_A 88 FPIVAVNRELR 98 (291)
T ss_dssp SCEEEESSCCC
T ss_pred CCEEEEecccC
Confidence 99999976554
No 204
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=30.07 E-value=90 Score=24.24 Aligned_cols=77 Identities=9% Similarity=0.142 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHH
Q 031262 14 HSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVR 93 (162)
Q Consensus 14 ~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~ 93 (162)
.+++..++|.+.|.+.+.+|+++|=-.... ...-..+..++..++ .+++.++...+ .+..-.++.-=.
T Consensus 164 ~~eRIar~AFe~A~~rrkkVt~v~KaNvlk----------~~~lf~~~~~eva~e-ypdI~~~~~~V-D~~~mqlv~~P~ 231 (359)
T 2y3z_A 164 EVERVARVAFEAARKRRKHVVSVDKANVLE----------VGEFWRKTVEEVGRG-YPDVALEHQYV-DAMAMHLVRSPA 231 (359)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEECTTTCH----------HHHHHHHHHHHHHTT-CTTSEEEEEEH-HHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEECCcccc----------ccHHHHHHHHHHHHH-CCcEEEEeeEH-HHHHHHHhhCcc
Confidence 467888888888887778899999543331 112233444555544 36777775553 222334443333
Q ss_pred hcCCCEEEEcc
Q 031262 94 KLEVSVLVLGQ 104 (162)
Q Consensus 94 ~~~~dliVmG~ 104 (162)
+.|.||+..
T Consensus 232 --~FDVivt~N 240 (359)
T 2y3z_A 232 --RFDVVVTGN 240 (359)
T ss_dssp --GCSEEEECH
T ss_pred --cccEEEEcC
Confidence 458777765
No 205
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.05 E-value=96 Score=18.85 Aligned_cols=19 Identities=0% Similarity=0.191 Sum_probs=9.1
Q ss_pred HHHHHHHhcCCCEEEEccC
Q 031262 87 TVMSQVRKLEVSVLVLGQK 105 (162)
Q Consensus 87 ~I~~~a~~~~~dliVmG~~ 105 (162)
.+.+.+++.++-++++...
T Consensus 22 ~v~kai~~gka~lViiA~D 40 (99)
T 3j21_Z 22 ETIRLAKTGGAKLIIVAKN 40 (99)
T ss_dssp HHHHHHHHTCCSEEEEECC
T ss_pred HHHHHHHcCCccEEEEeCC
Confidence 3444444444555555544
No 206
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=29.80 E-value=1.4e+02 Score=22.28 Aligned_cols=77 Identities=8% Similarity=-0.076 Sum_probs=41.4
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCch--hHHHHHHHhcCCCEEEEccCCCCcc-cccccccCCcchhHHHhhhhCCc
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPKL--GTVMSQVRKLEVSVLVLGQKKHSAF-INCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~~--~~I~~~a~~~~~dliVmG~~~~~~~-~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
+..+.++...+.....+.+-.-+. .+.. -.+.+.|++.++|-+++........ .+-+.-- - +.|+..++.
T Consensus 66 Er~~v~~~~v~~~~grvpViaGvg-~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~-f-----~~va~a~~l 138 (316)
T 3e96_A 66 EAKEEVRRTVEYVHGRALVVAGIG-YATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAY-F-----RDIIEALDF 138 (316)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEC-SSHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHH-H-----HHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCCcEEEEeC-cCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHH-H-----HHHHHhCCC
Confidence 333334444444334455544443 2333 3445778899999999986543211 1111111 1 567777789
Q ss_pred eEEEEec
Q 031262 134 LTVGVRK 140 (162)
Q Consensus 134 pVlvv~~ 140 (162)
||++...
T Consensus 139 PiilYn~ 145 (316)
T 3e96_A 139 PSLVYFK 145 (316)
T ss_dssp CEEEEEC
T ss_pred CEEEEeC
Confidence 9988863
No 207
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=29.71 E-value=91 Score=21.72 Aligned_cols=85 Identities=9% Similarity=-0.088 Sum_probs=40.2
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEec
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQG 82 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g 82 (162)
.+++++.|++. -..+++.+.+.. +.+..+.+.... +.. ......+.++ +. .++..+-..+.-.
T Consensus 4 ~~~ilalD~~~-~~~~~~~~~~~~----~~v~~~kv~~~~--f~~------~G~~~i~~l~---~~-~p~~~v~lD~kl~ 66 (216)
T 1q6o_A 4 PMLQVALDNQT-MDSAYETTRLIA----EEVDIIEVGTIL--CVG------EGVRAVRDLK---AL-YPHKIVLADAKIA 66 (216)
T ss_dssp CEEEEEECCSS-HHHHHHHHHHHG----GGCSEEEECHHH--HHH------HCTHHHHHHH---HH-CTTSEEEEEEEEC
T ss_pred CCeEEEECCCC-HHHHHHHHHHhc----ccCCEEEECHHH--HHH------hCHHHHHHHH---Hh-CCCCeEEEEEEec
Confidence 47999999975 345555555443 223334443221 100 1112222222 22 1233333333223
Q ss_pred CchhHHHHHHHhcCCCEEEEcc
Q 031262 83 PKLGTVMSQVRKLEVSVLVLGQ 104 (162)
Q Consensus 83 ~~~~~I~~~a~~~~~dliVmG~ 104 (162)
+......+.+.+.++|+|.+=.
T Consensus 67 dip~t~~~~~~~~Gad~itvh~ 88 (216)
T 1q6o_A 67 DAGKILSRMCFEANADWVTVIC 88 (216)
T ss_dssp SCHHHHHHHHHHTTCSEEEEET
T ss_pred ccHHHHHHHHHhCCCCEEEEec
Confidence 4555555566677777776644
No 208
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=29.07 E-value=1.2e+02 Score=23.24 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHH
Q 031262 14 HSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVR 93 (162)
Q Consensus 14 ~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~ 93 (162)
.+++..++|.+.|.+.+.+|+++|=-..... ...-..+.+++..++ .+++.++...+ .+..-.++.-=.
T Consensus 155 ~~eRiar~AFe~A~~rrkkVt~v~KaNvlk~---------s~glf~~~~~eva~e-yp~i~~~~~~v-D~~~mqlv~~P~ 223 (337)
T 1w0d_A 155 GVRRVVADAFERARRRRKHLTLVHKTNVLTF---------AGGLWLRTVDEVGEC-YPDVEVAYQHV-DAATIHMITDPG 223 (337)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEECTTTSHH---------HHHHHHHHHHHHHTT-CTTSEEEEEEH-HHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEECCccchh---------hhHHHHHHHHHHHHH-CCceEEEEEEH-HHHHHHHhhCcc
Confidence 4677888888888777788999995433210 111233445566554 36777776653 222334443333
Q ss_pred hcCCCEEEEcc
Q 031262 94 KLEVSVLVLGQ 104 (162)
Q Consensus 94 ~~~~dliVmG~ 104 (162)
+.|.||+..
T Consensus 224 --~FDVivt~N 232 (337)
T 1w0d_A 224 --RFDVIVTDN 232 (337)
T ss_dssp --GCSEEEECH
T ss_pred --cccEEEECc
Confidence 458777755
No 209
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=28.96 E-value=1.1e+02 Score=18.98 Aligned_cols=73 Identities=11% Similarity=0.071 Sum_probs=40.2
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhh---hCC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIK---KAD 132 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~---~~~ 132 (162)
....+.++..... .+.... +..-...+...+.+++..+|+|++...-.+. .+-++++.+-. ...
T Consensus 15 ~~~~~~l~~~L~~--~~~~~~--v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~---------~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 15 PDDIALIRRVLDR--KDIHCQ--LEFVDNGAKALYQVQQAKYDLIILDIGLPIA---------NGFEVMSAVRKPGANQH 81 (144)
T ss_dssp HHHHHHHHHHHHH--TTCCEE--EEEESSHHHHHHHHTTCCCSEEEECTTCGGG---------CHHHHHHHHHSSSTTTT
T ss_pred HHHHHHHHHHHHh--cCCCee--EEEECCHHHHHHHhhcCCCCEEEEeCCCCCC---------CHHHHHHHHHhcccccC
Confidence 3445556666665 233322 2233334555666778889999998764321 11122244433 346
Q ss_pred ceEEEEecC
Q 031262 133 CLTVGVRKQ 141 (162)
Q Consensus 133 ~pVlvv~~~ 141 (162)
+|++++...
T Consensus 82 ~pii~~s~~ 90 (144)
T 3kht_A 82 TPIVILTDN 90 (144)
T ss_dssp CCEEEEETT
T ss_pred CCEEEEeCC
Confidence 899988764
No 210
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=28.81 E-value=72 Score=24.11 Aligned_cols=40 Identities=13% Similarity=0.231 Sum_probs=27.4
Q ss_pred hhHHHHHHH---hcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEE
Q 031262 85 LGTVMSQVR---KLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGV 138 (162)
Q Consensus 85 ~~~I~~~a~---~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv 138 (162)
.|.|.+.++ .+++|.||+-+..++. . +.+.+++++||+=-
T Consensus 78 gEsl~DTarvLs~~~~D~iviR~~~~~~---------~-----~~la~~~~vPVINa 120 (304)
T 3r7f_A 78 GETLYDTIRTLESIGVDVCVIRHSEDEY---------Y-----EELVSQVNIPILNA 120 (304)
T ss_dssp SSCHHHHHHHHHHHTCCEEEEECSSTTC---------H-----HHHHHHCSSCEEES
T ss_pred CCCHHHHHHHHHHhcCCEEEEecCChhH---------H-----HHHHHhCCCCEEeC
Confidence 555655554 5568999998875442 2 66788899996643
No 211
>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}
Probab=28.79 E-value=2.3e+02 Score=22.77 Aligned_cols=75 Identities=7% Similarity=-0.008 Sum_probs=41.9
Q ss_pred CCCEEEEEEEeCCCCCCCCCCCc------cccchHHHHHHHHhHHHhCCCCeEEEEEEecCc-----h-----------h
Q 031262 29 KGDLLTLLHVVPPPKPNTSHHDS------SACCPYLANSLGSLCKACKPEVEVEALVIQGPK-----L-----------G 86 (162)
Q Consensus 29 ~~~~l~l~hv~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~-----~-----------~ 86 (162)
...+++++|.-+-+....+.... .--...+...++++.++ .+ -...+..||. . +
T Consensus 16 ~~~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~-~~---~~l~l~~GD~~~gs~~~~~~~~~~~~~~ 91 (527)
T 3qfk_A 16 QGSNIAFYVVSDVHGYIFPTDFTSRNQYQPMGLLLANHVIEQDRRQ-YD---QSFKIDNGDFLQGSPFCNYLIAHSGSSQ 91 (527)
T ss_dssp --CEEEEEEECCCTTCCSSCCSSSTTCCCSCSHHHHHHHHHHHHTT-SS---EEEEEECSCCSSSSHHHHHHHHTTCSSH
T ss_pred CCCcEEEEEEeccCCCccCcccccCCCcCCCcHHHHHHHHHHHHhc-CC---CEEEEECCCcCCCcHHHHHHhhcccCcc
Confidence 35789999998766443222111 11123444445554433 11 2234444553 1 4
Q ss_pred HHHHHHHhcCCCEEEEccCCC
Q 031262 87 TVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 87 ~I~~~a~~~~~dliVmG~~~~ 107 (162)
.+++..++.++|.+++|.|..
T Consensus 92 ~~~~~ln~lg~D~~t~GNHef 112 (527)
T 3qfk_A 92 PLVDFYNRMAFDFGTLGNHEF 112 (527)
T ss_dssp HHHHHHHHTCCCEECCCGGGG
T ss_pred hHHHHHHhcCCcEEecccccc
Confidence 677788888999999999863
No 212
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=28.61 E-value=1.4e+02 Score=23.19 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHhccCCCC-EEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHH
Q 031262 13 SHSKHAMMWALTHVTNKGD-LLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQ 91 (162)
Q Consensus 13 ~~s~~al~~A~~~a~~~~~-~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~ 91 (162)
+.+++..++|.+.|.+.+- +|+++|=-...... ..-..+..++.+++ .+++.++...+ .+..-.++.-
T Consensus 166 ~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s---------~glf~~~~~eva~e-ypdv~~~~~~v-D~~am~lv~~ 234 (364)
T 3flk_A 166 RGVDRILKYAFDLAEKRERKHVTSATKSNGMAIS---------MPYWDKRTEAMAAH-YPHVSWDKQHI-DILCARFVLQ 234 (364)
T ss_dssp HHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTH---------HHHHHHHHHHHHTT-CTTCEEEEEEH-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECcchhhhH---------HHHHHHHHHHHHHH-CCCceEEeeEH-HHHHHHHHhC
Confidence 3567788888888876654 79999954333211 11334455666555 37787776553 2223344433
Q ss_pred HHhcCCCEEEEcc
Q 031262 92 VRKLEVSVLVLGQ 104 (162)
Q Consensus 92 a~~~~~dliVmG~ 104 (162)
=+ +.|.||+..
T Consensus 235 P~--~FDVivt~N 245 (364)
T 3flk_A 235 PE--RFDVVVASN 245 (364)
T ss_dssp GG--GCSEEEECH
T ss_pred cc--cCcEEEecc
Confidence 33 458777655
No 213
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=28.05 E-value=97 Score=21.44 Aligned_cols=48 Identities=6% Similarity=-0.018 Sum_probs=30.1
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEe-cCchhHHHHHHHhcCCCEEEEccCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQ-GPKLGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~-g~~~~~I~~~a~~~~~dliVmG~~~ 106 (162)
...+.+.+.+.+.+ .+.+++..-.. ++..+.+.+... .+|.||+++.-
T Consensus 32 ~~~l~~~~~~~~~~--~g~~v~~~dL~~~~d~~~~~~~l~--~AD~iV~~~P~ 80 (204)
T 2amj_A 32 NDTLTEVADGTLRD--LGHDVRIVRADSDYDVKAEVQNFL--WADVVIWQMPG 80 (204)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEESSSCCCHHHHHHHHH--HCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHH--cCCEEEEEeCCccccHHHHHHHHH--hCCEEEEECCc
Confidence 34555666655555 36666644433 444666777777 57999999964
No 214
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=27.94 E-value=71 Score=16.71 Aligned_cols=26 Identities=4% Similarity=0.095 Sum_probs=17.8
Q ss_pred eEEEEEE-ecCchhHHHHHHHhcCCCE
Q 031262 74 EVEALVI-QGPKLGTVMSQVRKLEVSV 99 (162)
Q Consensus 74 ~~~~~v~-~g~~~~~I~~~a~~~~~dl 99 (162)
.+..++. +-+-.+.|++|+++.+.|-
T Consensus 11 kvslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 11 KVSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred eeEEEEeeCCchhHHHHHHHHHccchh
Confidence 3554443 3344899999999987764
No 215
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=27.93 E-value=1.8e+02 Score=21.45 Aligned_cols=72 Identities=6% Similarity=-0.005 Sum_probs=35.7
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecC-chhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhh-hCCc
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGP-KLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIK-KADC 133 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~-~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~-~~~~ 133 (162)
.+..+.+++...+ .+++++....+.. .+..+.+.+.+ ++|.||+.. |.+.+...+ ..+.. ..++
T Consensus 25 ~~~~~~i~~~l~~--~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~G-GDGTl~~v~----------~~l~~~~~~~ 90 (304)
T 3s40_A 25 HTNLTKIVPPLAA--AFPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFG-GDGTVFECT----------NGLAPLEIRP 90 (304)
T ss_dssp HHHHHHHHHHHHH--HCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEE-CHHHHHHHH----------HHHTTCSSCC
T ss_pred HHHHHHHHHHHHH--cCCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEc-cchHHHHHH----------HHHhhCCCCC
Confidence 3444555555555 3556665543332 24455555543 677666543 223232221 32332 2567
Q ss_pred eEEEEecC
Q 031262 134 LTVGVRKQ 141 (162)
Q Consensus 134 pVlvv~~~ 141 (162)
|+.++|-.
T Consensus 91 ~l~iiP~G 98 (304)
T 3s40_A 91 TLAIIPGG 98 (304)
T ss_dssp EEEEEECS
T ss_pred cEEEecCC
Confidence 88888764
No 216
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=27.83 E-value=1e+02 Score=23.12 Aligned_cols=39 Identities=10% Similarity=0.024 Sum_probs=27.0
Q ss_pred hhHHHHHHH---hcCCCEEEEccCCCCcccccccccCCcchhHHH-hhhhCCceEEE
Q 031262 85 LGTVMSQVR---KLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQ-CIKKADCLTVG 137 (162)
Q Consensus 85 ~~~I~~~a~---~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~-v~~~~~~pVlv 137 (162)
.|.|.+.++ .+.+|.||+-+..++. . +. +.+++++||+=
T Consensus 76 gEsl~DTarvls~~~~D~iviR~~~~~~---------~-----~~~la~~~~vPVIN 118 (291)
T 3d6n_B 76 GESFFDTLKTFEGLGFDYVVFRVPFVFF---------P-----YKEIVKSLNLRLVN 118 (291)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEESSCCC---------S-----CHHHHHTCSSEEEE
T ss_pred CCcHHHHHHHHHHhcCCEEEEEcCChHH---------H-----HHHHHHhCCCCEEe
Confidence 455655555 5557999999876542 2 45 77889999864
No 217
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=27.73 E-value=1.1e+02 Score=18.70 Aligned_cols=48 Identities=6% Similarity=0.027 Sum_probs=28.4
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhh---hCCceEEEEecC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIK---KADCLTVGVRKQ 141 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~---~~~~pVlvv~~~ 141 (162)
.+...+..++..+|+|++...-.+. .+.++++.+-. ...+||+++...
T Consensus 43 ~~~a~~~l~~~~~dlii~d~~l~~~---------~g~~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 43 PFDAGDLLHTVKPDVVMLDLMMVGM---------DGFSICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp HHHHHHHHHHTCCSEEEEETTCTTS---------CHHHHHHHHHTSTTTTTSEEEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEecccCCC---------cHHHHHHHHHhCccccCCcEEEEeCC
Confidence 3445566677789999998764321 11122244443 346898888654
No 218
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=27.60 E-value=1.7e+02 Score=21.05 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=30.1
Q ss_pred HHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCC
Q 031262 62 LGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 62 ~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
+..+... .|.++.. +...-|.+.+++.+++.++|+|.+......
T Consensus 143 va~~L~~--~G~~Vi~-LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~ 186 (258)
T 2i2x_B 143 VTALLRA--NGYNVVD-LGRDVPAEEVLAAVQKEKPIMLTGTALMTT 186 (258)
T ss_dssp HHHHHHH--TTCEEEE-EEEECCSHHHHHHHHHHCCSEEEEECCCTT
T ss_pred HHHHHHH--CCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEEeeccC
Confidence 3444444 5654432 223457899999999999999999986543
No 219
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=27.57 E-value=48 Score=23.10 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=21.8
Q ss_pred cCchhHHHHHHHhcCCCEEEEccCCC
Q 031262 82 GPKLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 82 g~~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.-|.+.+++.+++.++|+|.+.....
T Consensus 125 ~vp~~~l~~~~~~~~~d~v~lS~~~~ 150 (210)
T 1y80_A 125 DIEPGKFVEAVKKYQPDIVGMSALLT 150 (210)
T ss_dssp SBCHHHHHHHHHHHCCSEEEEECCSG
T ss_pred CCCHHHHHHHHHHcCCCEEEEecccc
Confidence 34689999999999999999988643
No 220
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=27.46 E-value=2.5e+02 Score=22.83 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=29.3
Q ss_pred EEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEE
Q 031262 77 ALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTV 136 (162)
Q Consensus 77 ~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVl 136 (162)
..+.++.....+.+.+++.++|+++-|+++ .++.++..+|.+
T Consensus 437 ~~i~~d~d~~el~~~i~~~~pDl~ig~~~~------------------~~~a~k~gIP~~ 478 (533)
T 1mio_A 437 TILIDDMNHHDMEVVLEKLKPDMFFAGIKE------------------KFVIQKGGVLSK 478 (533)
T ss_dssp EEEEESCBHHHHHHHHHHHCCSEEEECHHH------------------HHHHHHTTCEEE
T ss_pred cEEEeCCCHHHHHHHHHhcCCCEEEcccch------------------hHHHHhcCCCEE
Confidence 445444446678899999999999877653 455666667765
No 221
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=27.40 E-value=2.1e+02 Score=21.85 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=26.4
Q ss_pred cCCCEEEEccCCC---CcccccccccCCcchhHHHhhhhCCceEEEEec
Q 031262 95 LEVSVLVLGQKKH---SAFINCFCGTSSSEEFVDQCIKKADCLTVGVRK 140 (162)
Q Consensus 95 ~~~dliVmG~~~~---~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~ 140 (162)
.++|.+++|+..- |..-+. .|+.. + --++++..+|++++-+
T Consensus 208 ~~Vd~VivGAd~V~anG~v~NK-iGT~~---l-Al~Ak~~~vPfyV~a~ 251 (338)
T 3a11_A 208 KMTDKVVMGADSITVNGAVINK-IGTAL---I-ALTAKEHRVWTMIAAE 251 (338)
T ss_dssp GGCSEEEECCSEECTTSCEEEE-TTHHH---H-HHHHHHTTCEEEEECC
T ss_pred HhCCEEEECccEEecCCCEeec-ccHHH---H-HHHHHHcCCCEEEecc
Confidence 4689999999853 222222 34333 2 4456777999999855
No 222
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=27.31 E-value=63 Score=23.62 Aligned_cols=39 Identities=15% Similarity=0.046 Sum_probs=26.1
Q ss_pred CcEEEEEeCCCh----hhHHHHHHHHHhccCCCCEEEEEEEeCC
Q 031262 2 RKRVMVVVDQTS----HSKHAMMWALTHVTNKGDLLTLLHVVPP 41 (162)
Q Consensus 2 ~~~Ilv~vD~S~----~s~~al~~A~~~a~~~~~~l~l~hv~~~ 41 (162)
|++||+ +.+|+ .+....+.+++.+...+.++.++...+.
T Consensus 2 MmkiLi-I~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~ 44 (273)
T 1d4a_A 2 GRRALI-VLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAM 44 (273)
T ss_dssp CCEEEE-EECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred CCEEEE-EEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEcccc
Confidence 446655 44444 3566777777777667889988887654
No 223
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=27.27 E-value=1.6e+02 Score=20.57 Aligned_cols=72 Identities=7% Similarity=-0.042 Sum_probs=43.8
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHH-hhhhC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQ-CIKKA 131 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~-v~~~~ 131 (162)
..++.+.+++.+.+ .+..+.+....++. ...+++.....++|-||+.... .. . -. -+...
T Consensus 23 ~~~~~~gi~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~----~~------~-----~~~~l~~~ 85 (277)
T 3e61_A 23 FTLIARGVEDVALA--HGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAFN----EN------I-----IENTLTDH 85 (277)
T ss_dssp HHHHHHHHHHHHHH--TTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGGG----HH------H-----HHHHHHHC
T ss_pred HHHHHHHHHHHHHH--CCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC----hH------H-----HHHHHHcC
Confidence 46666777777777 46556554444444 3456777777889999986510 10 1 22 45567
Q ss_pred CceEEEEecCCC
Q 031262 132 DCLTVGVRKQSK 143 (162)
Q Consensus 132 ~~pVlvv~~~~~ 143 (162)
..||+.+.....
T Consensus 86 ~iPvV~~~~~~~ 97 (277)
T 3e61_A 86 HIPFVFIDRINN 97 (277)
T ss_dssp -CCEEEGGGCC-
T ss_pred CCCEEEEeccCC
Confidence 999999876544
No 224
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Probab=27.26 E-value=2.4e+02 Score=22.50 Aligned_cols=76 Identities=9% Similarity=0.006 Sum_probs=39.8
Q ss_pred CEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhC-CCCeEEEEEEecCc-----------hhHHHHHHHhcCCC
Q 031262 31 DLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACK-PEVEVEALVIQGPK-----------LGTVMSQVRKLEVS 98 (162)
Q Consensus 31 ~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~v~~g~~-----------~~~I~~~a~~~~~d 98 (162)
.++.++|+-+-+....+.....--...+...++++.++.. .+. -...+..||. .+.+++..+..++|
T Consensus 7 ~~l~Il~~~D~H~~~~~~~~~~~G~~~~~~~v~~~r~~~~~~~~-~~lvl~~GD~~~g~~~~~~~~~~~~~~~ln~lg~d 85 (516)
T 1hp1_A 7 YKITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGG-SVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYD 85 (516)
T ss_dssp EEEEEEEECCCTTCCSCCTTSCCCHHHHHHHHHHHHHHHHHHTC-EEEEEECSCCSSSCHHHHTTTTHHHHHHHHHHTCC
T ss_pred eEEEEEEecccccCccCCCCCCcCHHHHHHHHHHHHHhhhccCC-CEEEEeCCccCCCcchhhhcCCcHHHHHHhccCCC
Confidence 4689999987664432111101111223333333332210 111 1344555663 13566778888999
Q ss_pred EEEEccCCC
Q 031262 99 VLVLGQKKH 107 (162)
Q Consensus 99 liVmG~~~~ 107 (162)
..++|.|..
T Consensus 86 ~~~~GNHEf 94 (516)
T 1hp1_A 86 AMAIGNHEF 94 (516)
T ss_dssp EEECCGGGG
T ss_pred EEeeccccc
Confidence 999999864
No 225
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=27.20 E-value=85 Score=22.87 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=26.9
Q ss_pred hHHHHHHHHhHHHhC-CCCeEEEEEEecCchhHHHHHHHhcCCCEEEEcc
Q 031262 56 PYLANSLGSLCKACK-PEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQ 104 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~-~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~ 104 (162)
.+..++++++.+... .+.++.+.+.-|=..+.+ ..+.+.++|.+|+|+
T Consensus 176 ~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~~~ti-~~~~~aGAD~~V~GS 224 (246)
T 3inp_A 176 PAMLDKAKEISKWISSTDRDILLEIDGGVNPYNI-AEIAVCGVNAFVAGS 224 (246)
T ss_dssp TTHHHHHHHHHHHHHHHTSCCEEEEESSCCTTTH-HHHHTTTCCEEEESH
T ss_pred hHHHHHHHHHHHHHHhcCCCeeEEEECCcCHHHH-HHHHHcCCCEEEEeh
Confidence 444444444433211 244466666444344554 456677899999996
No 226
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=27.11 E-value=2e+02 Score=21.63 Aligned_cols=80 Identities=8% Similarity=0.019 Sum_probs=39.9
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCccc-----c-------cccccCCcchhHH
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFI-----N-------CFCGTSSSEEFVD 125 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~-----~-------~~~Gs~~~~~~~~ 125 (162)
..+.++.+.+.. ++.+-.............+.+.+.++|.|++..+|.+.+. + ...+..++.....
T Consensus 166 ~~~~i~~vr~~~--~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~ 243 (349)
T 1p0k_A 166 ALKRIEQICSRV--SVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLA 243 (349)
T ss_dssp HHHHHHHHHHHC--SSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHH
T ss_pred HHHHHHHHHHHc--CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHH
Confidence 445555555552 4445444321112345567788889999999876543211 1 1223333333334
Q ss_pred HhhhhC-CceEEEEe
Q 031262 126 QCIKKA-DCLTVGVR 139 (162)
Q Consensus 126 ~v~~~~-~~pVlvv~ 139 (162)
.+.... ++||+...
T Consensus 244 ~v~~~~~~ipvia~G 258 (349)
T 1p0k_A 244 EIRSEFPASTMIASG 258 (349)
T ss_dssp HHHHHCTTSEEEEES
T ss_pred HHHHhcCCCeEEEEC
Confidence 455554 78888764
No 227
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=27.05 E-value=1.6e+02 Score=20.36 Aligned_cols=94 Identities=16% Similarity=0.046 Sum_probs=49.4
Q ss_pred CCcEEEEEeCCChh---hHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEE
Q 031262 1 MRKRVMVVVDQTSH---SKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEA 77 (162)
Q Consensus 1 m~~~Ilv~vD~S~~---s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 77 (162)
||+..+++-.|.+- -...++.|.+++ +++.+. +...+.. .+ --..++-.+.++..+.. .+.+.+.
T Consensus 21 ~mki~v~~GsFDpiH~GHl~li~~A~~~~----d~viv~-v~~~p~K----~~-l~s~eeR~~ml~~~~~~-v~~v~v~- 88 (187)
T 3k9w_A 21 SMVVAVYPGTFDPLTRGHEDLVRRASSIF----DTLVVG-VADSRAK----KP-FFSLEERLKIANEVLGH-YPNVKVM- 88 (187)
T ss_dssp CCCEEEEEECCTTCCHHHHHHHHHHHHHS----SEEEEE-EECCGGG----CC-SSCHHHHHHHHHHHHTT-CTTEEEE-
T ss_pred CcEEEEEEEeCCcCcHHHHHHHHHHHHHC----CcEEEE-EecCCcc----CC-CCCHHHHHHHHHHHhcc-CCcEEEE-
Confidence 57777777777663 356777777775 344332 2221110 00 01223333444443322 1333332
Q ss_pred EEEecCchhHHHHHHHhcCCCEEEEccCCCCccc
Q 031262 78 LVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFI 111 (162)
Q Consensus 78 ~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~ 111 (162)
..+ +-+.+++++.+++.+|+|.+....+.
T Consensus 89 -~f~----~~~~d~l~~l~~~~iv~G~r~~~Df~ 117 (187)
T 3k9w_A 89 -GFT----GLLKDFVRANDARVIVRGLRAVSDFE 117 (187)
T ss_dssp -EES----SCHHHHHHHTTCSEEEEECCTTSCHH
T ss_pred -ech----hhHHHHHHHcCCCEEEECCCcccccc
Confidence 222 24557889999999999977655443
No 228
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=26.82 E-value=1.8e+02 Score=20.95 Aligned_cols=36 Identities=8% Similarity=-0.019 Sum_probs=27.4
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEe
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
+.++++|++.|..+|.-++..+.+.. +.++..+|+-
T Consensus 25 g~~~vvv~lSGGiDSsv~a~l~~~~~---g~~v~av~~~ 60 (249)
T 3p52_A 25 QSQGVVLGLSGGIDSALVATLCKRAL---KENVFALLMP 60 (249)
T ss_dssp SCSEEEEECCSSHHHHHHHHHHHHHH---TTSEEEEECC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHHHc---CCcEEEEEec
Confidence 35789999999998888777776543 4678888864
No 229
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=26.46 E-value=1.6e+02 Score=20.38 Aligned_cols=75 Identities=8% Similarity=0.030 Sum_probs=45.5
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..++.+.+++.+.+ .+.++.+....+++ ...+++.....++|-||+....... . .. -.-+...+
T Consensus 17 ~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~------~~-----~~~~~~~~ 82 (272)
T 3o74_A 17 YARIAKQLEQGARA--RGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE-D------DS-----YRELQDKG 82 (272)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS-C------CH-----HHHHHHTT
T ss_pred HHHHHHHHHHHHHH--CCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc-H------HH-----HHHHHHcC
Confidence 35666677777777 46666554444444 3456666777889998886543111 1 01 23356679
Q ss_pred ceEEEEecCCC
Q 031262 133 CLTVGVRKQSK 143 (162)
Q Consensus 133 ~pVlvv~~~~~ 143 (162)
+||+.+.....
T Consensus 83 iPvV~~~~~~~ 93 (272)
T 3o74_A 83 LPVIAIDRRLD 93 (272)
T ss_dssp CCEEEESSCCC
T ss_pred CCEEEEccCCC
Confidence 99999876544
No 230
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=26.44 E-value=1.1e+02 Score=23.45 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=26.8
Q ss_pred cEEEEEeCCChhhHHHHHHHHHh---ccCCCCEEEEEE
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTH---VTNKGDLLTLLH 37 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~---a~~~~~~l~l~h 37 (162)
++|+++.|+++....|...+++. ....+..+.++.
T Consensus 207 ~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~~ 244 (338)
T 1dd9_A 207 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMF 244 (338)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEE
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 67999999999999999888876 344566665543
No 231
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=26.39 E-value=2e+02 Score=21.69 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=28.6
Q ss_pred HHHHhHHHhCCCCeEEEEEEecCc-hhHHHHHHHhcCCCEEEEccCCC
Q 031262 61 SLGSLCKACKPEVEVEALVIQGPK-LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 61 ~~~~~~~~~~~~v~~~~~v~~g~~-~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
.+++.+.+ .++.+. ...+. .+.+.+..++.++|++|+-..++
T Consensus 54 ~v~~~A~~--~gIpv~---~~~~~~~~~~~~~l~~~~~Dliv~~~y~~ 96 (318)
T 3q0i_A 54 PVKTLALE--HNVPVY---QPENFKSDESKQQLAALNADLMVVVAYGL 96 (318)
T ss_dssp HHHHHHHH--TTCCEE---CCSCSCSHHHHHHHHTTCCSEEEESSCCS
T ss_pred HHHHHHHH--cCCCEE---ccCcCCCHHHHHHHHhcCCCEEEEeCccc
Confidence 45666666 466652 11222 45788999999999999988763
No 232
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=26.33 E-value=1.4e+02 Score=19.93 Aligned_cols=42 Identities=7% Similarity=0.085 Sum_probs=22.6
Q ss_pred HHHHHhHHHhCCCCeEEEEEEecCchhHHHHHH----HhcCCCEEEEc
Q 031262 60 NSLGSLCKACKPEVEVEALVIQGPKLGTVMSQV----RKLEVSVLVLG 103 (162)
Q Consensus 60 ~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a----~~~~~dliVmG 103 (162)
..+.+++.+ .+.++.....-.|..+.|.+.. ++.++|+||..
T Consensus 24 ~~l~~~l~~--~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 69 (164)
T 2is8_A 24 LAIREVLAG--GPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTN 69 (164)
T ss_dssp HHHHHHHTT--SSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHHH--CCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 345555555 4666654444455544444433 32368988763
No 233
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=26.24 E-value=79 Score=25.48 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=32.3
Q ss_pred CeEEEEEEecCchhHHHH--HHHhcCCCEEEE-ccCCCCcccccccccCC
Q 031262 73 VEVEALVIQGPKLGTVMS--QVRKLEVSVLVL-GQKKHSAFINCFCGTSS 119 (162)
Q Consensus 73 v~~~~~v~~g~~~~~I~~--~a~~~~~dliVm-G~~~~~~~~~~~~Gs~~ 119 (162)
--+.+++..|+..+.|.+ .|.++++|.|.+ -+.|.+.+.-...|.|+
T Consensus 151 p~iy~ivAtG~i~eDi~qa~aAA~~GAD~IaVIRttgQSllDyvp~GaT~ 200 (516)
T 1xrs_A 151 PLLYVIVATGNIYEDITQAVAAAKQGADVIAVIRTTGQSLLDYVPYGATT 200 (516)
T ss_dssp CEEEEEECCSCHHHHHHHHHHHHHTTCSEEEECCCTTGGGCSSCCCSCCS
T ss_pred CEEEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhcccCCCCCC
Confidence 335577778999888874 588999998855 44555656555556444
No 234
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=26.05 E-value=60 Score=23.83 Aligned_cols=29 Identities=3% Similarity=0.154 Sum_probs=22.6
Q ss_pred eEEEEEEecCchhHHHHHHHhcCCCEEEE
Q 031262 74 EVEALVIQGPKLGTVMSQVRKLEVSVLVL 102 (162)
Q Consensus 74 ~~~~~v~~g~~~~~I~~~a~~~~~dliVm 102 (162)
+++-++..=|+.+.+++.|-+.++|+||.
T Consensus 37 ~V~~I~~alD~t~~vi~eAi~~gadlIit 65 (267)
T 2fyw_A 37 GIQRVMVALDIREETVAEAIEKGVDLIIV 65 (267)
T ss_dssp BCSEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred ccCEEEEEEcCCHHHHHHHHHCCCCEEEE
Confidence 34455555677899999999999999975
No 235
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=25.95 E-value=2.4e+02 Score=22.12 Aligned_cols=93 Identities=9% Similarity=0.057 Sum_probs=41.0
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEec
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQG 82 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g 82 (162)
++|.+-.+.++.+...++...+.+.+.|..+...-.++... ........+.+...+ .+.++-+....+
T Consensus 186 ~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~----------~~~d~~~~l~~~i~~--s~a~vIi~~~~~ 253 (479)
T 3sm9_A 186 TYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSN----------IRKSYDSVIRELLQK--PNARVVVLFMRS 253 (479)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC------------CHHHHHHHHHHHHTC--TTCCEEEEECCH
T ss_pred eEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCC----------ChHHHHHHHHHHHhc--CCCeEEEEEcCh
Confidence 34444444444555555544444445555555444443211 011222222122211 233333333333
Q ss_pred CchhHHHHHHHhcCCCEEEEccCCC
Q 031262 83 PKLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 83 ~~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
+....+++.+.+.+...+.+++.+.
T Consensus 254 ~~~~~l~~~~~~~g~~~~wI~s~~w 278 (479)
T 3sm9_A 254 DDSRELIAAASRANASFTWVASDGW 278 (479)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECTTT
T ss_pred HHHHHHHHHHHHhCCEEEEEEechh
Confidence 3355666667766666666666554
No 236
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=25.67 E-value=2.1e+02 Score=22.20 Aligned_cols=34 Identities=9% Similarity=0.091 Sum_probs=19.9
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEe
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
|+++||| +...+.+...++. +++.|-++++++..
T Consensus 5 ~~~kiLI-~g~g~~a~~i~~a----a~~~G~~~v~v~~~ 38 (446)
T 3ouz_A 5 EIKSILI-ANRGEIALRALRT----IKEMGKKAICVYSE 38 (446)
T ss_dssp CCCEEEE-CCCHHHHHHHHHH----HHHTTCEEEEEEEG
T ss_pred ccceEEE-ECCCHHHHHHHHH----HHHcCCEEEEEEcC
Confidence 6789999 4444433333332 34457787777654
No 237
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=25.63 E-value=1.2e+02 Score=18.67 Aligned_cols=48 Identities=8% Similarity=0.063 Sum_probs=28.7
Q ss_pred hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhh---hCCceEEEEecC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIK---KADCLTVGVRKQ 141 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~---~~~~pVlvv~~~ 141 (162)
.+...+..++..+|+|++...-.+. .+.++++.+-. ...+||+++-..
T Consensus 41 ~~~a~~~l~~~~~dlii~d~~l~~~---------~g~~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 41 AIEAVPVAVKTHPHLIITEANMPKI---------SGMDLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCSSS---------CHHHHHHHHHTSTTTTTSCEEEEESS
T ss_pred HHHHHHHHHcCCCCEEEEcCCCCCC---------CHHHHHHHHHcCcccCCCCEEEEeCC
Confidence 4444566667789999998764321 11122244443 357899988664
No 238
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=25.61 E-value=1.8e+02 Score=20.65 Aligned_cols=73 Identities=11% Similarity=0.150 Sum_probs=41.7
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
.++.+.+++.+.+ .|..+.+....++. ...+++...+.++|-||+-..... . +. ...+....+
T Consensus 28 ~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~----------~--~~-~~~l~~~~i 92 (295)
T 3hcw_A 28 INVLLGISETCNQ--HGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN----------D--PI-KQMLIDESM 92 (295)
T ss_dssp HHHHHHHHHHHHT--TTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT----------C--HH-HHHHHHTTC
T ss_pred HHHHHHHHHHHHH--CCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC----------h--HH-HHHHHhCCC
Confidence 4555666666665 45444332222222 345677777888998888643211 0 01 233566789
Q ss_pred eEEEEecCCC
Q 031262 134 LTVGVRKQSK 143 (162)
Q Consensus 134 pVlvv~~~~~ 143 (162)
||+++.....
T Consensus 93 PvV~i~~~~~ 102 (295)
T 3hcw_A 93 PFIVIGKPTS 102 (295)
T ss_dssp CEEEESCCCS
T ss_pred CEEEECCCCc
Confidence 9999866543
No 239
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=25.43 E-value=1.2e+02 Score=18.30 Aligned_cols=71 Identities=3% Similarity=0.018 Sum_probs=37.9
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhh-CCce
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKK-ADCL 134 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~-~~~p 134 (162)
....+.+++.... .+..+. . .. ..+...+..++..+|+|++...-.+. .+-++++.+... ..+|
T Consensus 17 ~~~~~~l~~~L~~--~g~~v~--~-~~-~~~~a~~~l~~~~~dlvi~d~~l~~~---------~g~~~~~~l~~~~~~~~ 81 (130)
T 3eod_A 17 QVFRSLLDSWFSS--LGATTV--L-AA-DGVDALELLGGFTPDLMICDIAMPRM---------NGLKLLEHIRNRGDQTP 81 (130)
T ss_dssp HHHHHHHHHHHHH--TTCEEE--E-ES-CHHHHHHHHTTCCCSEEEECCC--------------CHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHh--CCceEE--E-eC-CHHHHHHHHhcCCCCEEEEecCCCCC---------CHHHHHHHHHhcCCCCC
Confidence 3445556666665 343332 2 23 34455566788889999998763321 111222444333 3588
Q ss_pred EEEEecC
Q 031262 135 TVGVRKQ 141 (162)
Q Consensus 135 Vlvv~~~ 141 (162)
++++...
T Consensus 82 ii~~t~~ 88 (130)
T 3eod_A 82 VLVISAT 88 (130)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 8888664
No 240
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=25.34 E-value=2.1e+02 Score=21.29 Aligned_cols=77 Identities=5% Similarity=-0.099 Sum_probs=42.1
Q ss_pred HHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCC----cccccccccCCcchhHHHhhhhCC
Q 031262 59 ANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHS----AFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 59 ~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~----~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
.+.++...+.....+.+-.-+...+. .-.+.+.|++.++|-+++-..... .-.+-+..- - +.|...++
T Consensus 64 ~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~-f-----~~va~a~~ 137 (309)
T 3fkr_A 64 DVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEF-Y-----ARVSDAIA 137 (309)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHH-H-----HHHHHHCS
T ss_pred HHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHH-H-----HHHHHhcC
Confidence 33333333333334444433322233 344557888999999998775321 111111111 1 56788889
Q ss_pred ceEEEEecC
Q 031262 133 CLTVGVRKQ 141 (162)
Q Consensus 133 ~pVlvv~~~ 141 (162)
.||++...+
T Consensus 138 lPiilYn~P 146 (309)
T 3fkr_A 138 IPIMVQDAP 146 (309)
T ss_dssp SCEEEEECG
T ss_pred CCEEEEeCC
Confidence 999998766
No 241
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=25.21 E-value=54 Score=25.08 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=28.3
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEE
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLL 36 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~ 36 (162)
++|+++.|+++....|...+++.+...+..+.++
T Consensus 196 ~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v~ 229 (329)
T 4edg_A 196 SNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVI 229 (329)
T ss_dssp SEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 5799999999999999998888887767666554
No 242
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=25.04 E-value=78 Score=24.72 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=28.2
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEE
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLL 36 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~ 36 (162)
++|+++.|+++....|...+++.+...+..+.++
T Consensus 288 ~~vil~~D~D~AG~~Aa~r~~~~l~~~g~~~~v~ 321 (407)
T 2au3_A 288 KKVYILYDGDDAGRKAMKSAIPLLLSAGVEVYPV 321 (407)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 6899999999999999888888877677766654
No 243
>4hg1_A Putative cytoplasmic protein; PSI-biology, MCSG, midwest center for structural genomics; HET: MLY MSE MLZ PG4; 1.75A {Salmonella enterica subsp} PDB: 4hg1_C* 4hg1_B*
Probab=24.95 E-value=54 Score=22.89 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCCCcEEEeceeeceeee
Q 031262 132 DCLTVGVRKQSKGMGGYIISTRWQKNFWL 160 (162)
Q Consensus 132 ~~pVlvv~~~~~~~~~~~~~~~~~~~~~~ 160 (162)
+.-|++.-.....+|.|.|+.--.++|||
T Consensus 133 DQ~i~IY~tE~DenGEYPi~R~E~nefWL 161 (225)
T 4hg1_A 133 DQAIFIYITERDANGEYPIARMERNEFWL 161 (225)
T ss_dssp SSEEEEEESCCCTTSCCCEEEEETTEEEE
T ss_pred CceEEEEEeecccCCCCCceehhhhhHHH
Confidence 34566666667778999999888999998
No 244
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=24.91 E-value=1.6e+02 Score=19.73 Aligned_cols=45 Identities=9% Similarity=0.030 Sum_probs=27.5
Q ss_pred HHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHH----HhcCCCEEEEcc
Q 031262 58 LANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQV----RKLEVSVLVLGQ 104 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a----~~~~~dliVmG~ 104 (162)
-...+.++..+ .|.++....+-+|..+.|.+.. ...++|+|+...
T Consensus 41 ng~~L~~~L~~--~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 41 SGDIIKQLLIE--NGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred hHHHHHHHHHH--CCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 33456666666 5677765555677655555443 345789988643
No 245
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=24.90 E-value=2.2e+02 Score=21.38 Aligned_cols=83 Identities=11% Similarity=0.167 Sum_probs=48.0
Q ss_pred CCcEEEEEeCC-----ChhhHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeE
Q 031262 1 MRKRVMVVVDQ-----TSHSKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEV 75 (162)
Q Consensus 1 m~~~Ilv~vD~-----S~~s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 75 (162)
||+ |+|-.+. ++.+.+++..|.+++. +++++-+=+. . + +.+++.+.. .|.+-
T Consensus 1 ~m~-~lv~~e~~~g~l~~~~~eal~aA~~La~----~V~av~~G~~---~----------~---~~~~~a~~a--~GaDk 57 (315)
T 1efv_A 1 MQS-TLVIAEHANDSLAPITLNTITAATRLGG----EVSCLVAGTK---C----------D---KVAQDLCKV--AGIAK 57 (315)
T ss_dssp -CE-EEEECCEETTEECTHHHHHHHHHHTTTS----EEEEEEEESC---C----------H---HHHHHHHHS--TTCCE
T ss_pred Cce-EEEEEEccCCCcCHHHHHHHHHHHHhcC----cEEEEEECCc---h----------H---HHHHHHHHh--cCCCE
Confidence 555 6776653 4578899999988762 6766654322 1 1 223333222 34443
Q ss_pred EEEEEe----c-Cc---hhHHHHHHHhcCCCEEEEccCC
Q 031262 76 EALVIQ----G-PK---LGTVMSQVRKLEVSVLVLGQKK 106 (162)
Q Consensus 76 ~~~v~~----g-~~---~~~I~~~a~~~~~dliVmG~~~ 106 (162)
-..+.. + ++ ...|.+.+++.++|+|++|...
T Consensus 58 v~~v~d~~l~~~~~~~~a~~La~li~~~~pdlVL~g~ts 96 (315)
T 1efv_A 58 VLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASA 96 (315)
T ss_dssp EEEEECGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESSH
T ss_pred EEEecCchhccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 333322 1 12 5677788888889999999854
No 246
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=24.87 E-value=2.7e+02 Score=22.26 Aligned_cols=23 Identities=4% Similarity=0.110 Sum_probs=14.3
Q ss_pred hhHHHHHHHhcCCCEEEEccCCC
Q 031262 85 LGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
...++..+.+.+.+.+.+|+.+.
T Consensus 257 ~~~~~~~~~~~g~~~~~i~s~~~ 279 (555)
T 2e4u_A 257 SRELIAAANRVNASFTWVASDGW 279 (555)
T ss_dssp HHHHHHHHHHTTCCCEEEECTTT
T ss_pred HHHHHHHHHHhcCCeEEEEeccc
Confidence 45566666666556777776543
No 247
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=24.79 E-value=1.8e+02 Score=20.40 Aligned_cols=75 Identities=11% Similarity=0.099 Sum_probs=44.0
Q ss_pred cchHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhC
Q 031262 54 CCPYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKA 131 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~ 131 (162)
...++.+.+++.+.+ .+..+.+.....+. ...+++...+.++|-||+-...... . . -..+...
T Consensus 27 ~~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~--~------~-----~~~l~~~ 91 (292)
T 3k4h_A 27 FFPEVIRGISSFAHV--EGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREND--R------I-----IQYLHEQ 91 (292)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTC--H------H-----HHHHHHT
T ss_pred HHHHHHHHHHHHHHH--cCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh--H------H-----HHHHHHC
Confidence 345666777777777 45444332222222 3556777778899998885432110 0 1 2345668
Q ss_pred CceEEEEecCCC
Q 031262 132 DCLTVGVRKQSK 143 (162)
Q Consensus 132 ~~pVlvv~~~~~ 143 (162)
++||+.+.....
T Consensus 92 ~iPvV~~~~~~~ 103 (292)
T 3k4h_A 92 NFPFVLIGKPYD 103 (292)
T ss_dssp TCCEEEESCCSS
T ss_pred CCCEEEECCCCC
Confidence 999999866543
No 248
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=24.73 E-value=2e+02 Score=20.89 Aligned_cols=75 Identities=7% Similarity=-0.017 Sum_probs=45.2
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..++.+.+++.+.+ .|..+.+.-..+++ ....++...+.++|-||+....... . .. ...+...+
T Consensus 78 ~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~------~~-----~~~~~~~~ 143 (338)
T 3dbi_A 78 FSELLFHAARMAEE--KGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-D------EI-----DDIIDAHS 143 (338)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCH-H------HH-----HHHHHHCS
T ss_pred HHHHHHHHHHHHHH--CCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCh-H------HH-----HHHHHcCC
Confidence 45666677777777 46555444433444 2335666777889999886543221 0 01 44567788
Q ss_pred ceEEEEecCCC
Q 031262 133 CLTVGVRKQSK 143 (162)
Q Consensus 133 ~pVlvv~~~~~ 143 (162)
+||+++.....
T Consensus 144 iPvV~~~~~~~ 154 (338)
T 3dbi_A 144 QPIMVLNRRLR 154 (338)
T ss_dssp SCEEEESSCCS
T ss_pred CCEEEEcCCCC
Confidence 99999866443
No 249
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=24.64 E-value=76 Score=23.35 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=59.2
Q ss_pred hHHHHHHHHHhccCCCCEEEEEEEeCCCCCCCCCC--CccccchHHH-------HHHHHhHHHhCCCCeEEEEEEec---
Q 031262 15 SKHAMMWALTHVTNKGDLLTLLHVVPPPKPNTSHH--DSSACCPYLA-------NSLGSLCKACKPEVEVEALVIQG--- 82 (162)
Q Consensus 15 s~~al~~A~~~a~~~~~~l~l~hv~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~v~~g--- 82 (162)
....+...+++|++.|-.|- -| +.+++...++ ...-..+++. ..++.++.. .+.++..+--.|
T Consensus 41 Dp~~M~~tv~lA~~~gV~IG-AH--PgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~--~G~~l~hVKPHGALY 115 (250)
T 2dfa_A 41 SPGRILEAVRLAKAHGVAVG-AH--PGFPDLVGFGRREMALSPEEVYADVLYQIGALSAFLKA--EGLPLHHVKPHGALY 115 (250)
T ss_dssp CHHHHHHHHHHHHHTTCEEE-EE--CCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHH--TTCCCCCBCCCHHHH
T ss_pred CHHHHHHHHHHHHHcCCeEe-cC--CCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--cCCEeEEeccCHHHH
Confidence 34556667777766664432 33 2222221111 1111222222 345667776 455554433343
Q ss_pred -----Cc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceEEEE
Q 031262 83 -----PK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLTVGV 138 (162)
Q Consensus 83 -----~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv 138 (162)
|+ +++|++.+.+.+.+|+++|-.+ |.. ....+...+|++--
T Consensus 116 N~~~~d~~~A~av~~av~~~d~~L~l~~l~g----------s~~-----~~~A~~~Gl~~~~E 163 (250)
T 2dfa_A 116 LKACRDRETARAIALAVKAFDPGLPLVVLPG----------TVY-----EEEARKAGLRVVLE 163 (250)
T ss_dssp HHHHHCHHHHHHHHHHHHHHCTTCCEEECTT----------SHH-----HHHHHHTTCCEEEE
T ss_pred HHHhhCHHHHHHHHHHHHHhCCCcEEEecCC----------hHH-----HHHHHHcCCcEEEE
Confidence 33 8999999999999999999653 333 66777888887753
No 250
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=24.61 E-value=1.2e+02 Score=22.25 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=44.7
Q ss_pred HHHHHhHHHhCCCCeEEEEEEec--------Cc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhh
Q 031262 60 NSLGSLCKACKPEVEVEALVIQG--------PK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIK 129 (162)
Q Consensus 60 ~~~~~~~~~~~~~v~~~~~v~~g--------~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~ 129 (162)
..++.++.. .|.++.-+--.| |+ +++|++.+.+.+.+|+++|..+ |.. ....+
T Consensus 87 GAL~a~a~~--~G~~l~hVKPHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~g----------s~~-----~~~A~ 149 (252)
T 1xw8_A 87 GALATIARA--QGGVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLAG----------SEL-----IRAGK 149 (252)
T ss_dssp HHHHHHHHH--TTCCEEEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEETT----------SHH-----HHHHH
T ss_pred HHHHHHHHH--cCCEeEEeCcCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC----------hHH-----HHHHH
Confidence 345677777 677777665554 33 8999999999999999999654 333 66677
Q ss_pred hCCceEEEE
Q 031262 130 KADCLTVGV 138 (162)
Q Consensus 130 ~~~~pVlvv 138 (162)
...+|++--
T Consensus 150 ~~Gl~~~~E 158 (252)
T 1xw8_A 150 QYGLTTREE 158 (252)
T ss_dssp HTTCCEEEE
T ss_pred HcCCcEEEE
Confidence 788887653
No 251
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=24.60 E-value=70 Score=21.65 Aligned_cols=36 Identities=8% Similarity=0.113 Sum_probs=27.3
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEe
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
+.+++.+..|..+...++.+ +.|++.|.+++.+.-.
T Consensus 110 ~DvvI~iS~SG~t~~~i~~~-~~ak~~g~~vI~IT~~ 145 (196)
T 2yva_A 110 GDVLLAISTRGNSRDIVKAV-EAAVTRDMTIVALTGY 145 (196)
T ss_dssp TCEEEEECSSSCCHHHHHHH-HHHHHTTCEEEEEECT
T ss_pred CCEEEEEeCCCCCHHHHHHH-HHHHHCCCEEEEEeCC
Confidence 46889999998888877644 5677888888777654
No 252
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=24.35 E-value=2.3e+02 Score=21.40 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=26.7
Q ss_pred CCCEEEEccCCC---CcccccccccCCcchhHHHhhhhCCceEEEEecC
Q 031262 96 EVSVLVLGQKKH---SAFINCFCGTSSSEEFVDQCIKKADCLTVGVRKQ 141 (162)
Q Consensus 96 ~~dliVmG~~~~---~~~~~~~~Gs~~~~~~~~~v~~~~~~pVlvv~~~ 141 (162)
++|.+++|+..- |..-+. .|+.. + --+.++..+||+++-+.
T Consensus 189 ~vd~VivGAd~i~~nG~v~nk-iGT~~---i-Al~Ak~~~vP~~V~a~~ 232 (315)
T 3ecs_A 189 KADLVIVGAEGVVENGGIINK-IGTNQ---M-AVCAKAQNKPFYVVAES 232 (315)
T ss_dssp GCSEEEEECSEECTTSCEEEE-TTHHH---H-HHHHHHTTCCEEEECCG
T ss_pred hCCEEEECceEEecCCCeeeh-hhhHH---H-HHHHHHhCCCEEEEecc
Confidence 789999999853 333322 33322 2 34677789999999654
No 253
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=23.95 E-value=1.8e+02 Score=20.05 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=27.2
Q ss_pred HHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEcc
Q 031262 60 NSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQ 104 (162)
Q Consensus 60 ~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~ 104 (162)
+.++.++++ -|++++... . +...+....++.++|+++-|.
T Consensus 57 dl~~~i~~~--~g~~~~~~~--~-~~~~~~~~l~~g~~D~~~~~~ 96 (259)
T 4dz1_A 57 ELFSSYCQS--RHCKLNITE--Y-AWDGMLGAVASGQADVAFSGI 96 (259)
T ss_dssp HHHHHHHHH--HTCEEEEEE--C-CHHHHHHHHHHTSSSEEEEEE
T ss_pred HHHHHHHHH--hCCeEEEEE--c-CHHHHHHHHhCCCCCEEEECC
Confidence 344555555 366666543 3 778888889999999987663
No 254
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=23.91 E-value=1.3e+02 Score=18.51 Aligned_cols=73 Identities=11% Similarity=0.167 Sum_probs=39.0
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhc-CCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKL-EVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~-~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
.....+.++.+.... ++ +.......+..+++ +.+++. .+|+|++...-.+. .+-++++.+-.+.++
T Consensus 22 ~~~~~~~l~~~L~~~-~~--~~~v~~~~~~~~al-~~l~~~~~~dlvilD~~l~~~---------~g~~~~~~lr~~~~~ 88 (145)
T 3kyj_B 22 AAMMRLYIASFIKTL-PD--FKVVAQAANGQEAL-DKLAAQPNVDLILLDIEMPVM---------DGMEFLRHAKLKTRA 88 (145)
T ss_dssp CHHHHHHHHHHHTTC-TT--EEEEEEESSHHHHH-HHHHHCTTCCEEEECTTSCCC---------TTCHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHhC-CC--ceEEEEECCHHHHH-HHHhcCCCCCEEEEeCCCCCC---------CHHHHHHHHHhcCCC
Confidence 345555666666542 23 33332334444444 445555 89999998764321 111233555556678
Q ss_pred eEEEEec
Q 031262 134 LTVGVRK 140 (162)
Q Consensus 134 pVlvv~~ 140 (162)
|++++-.
T Consensus 89 ~iiil~~ 95 (145)
T 3kyj_B 89 KICMLSS 95 (145)
T ss_dssp EEC-CBS
T ss_pred CeEEEEE
Confidence 8887754
No 255
>2kll_A Interleukin-33; beta-trefoil, cytokine, polymorphism, secreted; NMR {Homo sapiens}
Probab=23.71 E-value=34 Score=22.63 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=13.4
Q ss_pred CcEEEeceeeceeeecC
Q 031262 146 GGYIISTRWQKNFWLLA 162 (162)
Q Consensus 146 ~~~~~~~~~~~~~~~~~ 162 (162)
...+++..+-|+|||-|
T Consensus 71 ~~LmVnlSP~KDf~LHA 87 (161)
T 2kll_A 71 KMLMVTLSPTKDFWLHA 87 (161)
T ss_dssp CCEEEEEESSSSEEEEE
T ss_pred cEEEEEcccccceeEec
Confidence 35677888999999854
No 256
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=23.65 E-value=1.7e+02 Score=21.55 Aligned_cols=25 Identities=8% Similarity=0.089 Sum_probs=20.2
Q ss_pred CchhHHHHHHHhcCCCEEEEccCCC
Q 031262 83 PKLGTVMSQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 83 ~~~~~I~~~a~~~~~dliVmG~~~~ 107 (162)
...+.+.+..++.++|++|+-..++
T Consensus 64 ~~~~~~~~~L~~~~pDliv~~~y~~ 88 (260)
T 1zgh_A 64 NKDELTFEKVKLINPEYILFPHWSW 88 (260)
T ss_dssp SGGGCCHHHHHHHCCSEEEESSCCS
T ss_pred CCCHHHHHHHHhcCCCEEEEecccc
Confidence 4466778888999999999988763
No 257
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=23.51 E-value=2.3e+02 Score=21.11 Aligned_cols=82 Identities=7% Similarity=-0.099 Sum_probs=43.2
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchh--HHHHHHHhcCC-CEEEEccCCCCcc-cccccccCCcchhHHHhhhhC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLG--TVMSQVRKLEV-SVLVLGQKKHSAF-INCFCGTSSSEEFVDQCIKKA 131 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~--~I~~~a~~~~~-dliVmG~~~~~~~-~~~~~Gs~~~~~~~~~v~~~~ 131 (162)
++..+.++...+.....+.+-.-+...+..+ .+.+.+++.++ |-+++-....... .+-+.. .- +.|...+
T Consensus 60 ~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~-~f-----~~va~a~ 133 (311)
T 3h5d_A 60 DEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQ-HF-----KAIADAS 133 (311)
T ss_dssp HHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHH-HH-----HHHHHSC
T ss_pred HHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHH-HH-----HHHHHhC
Confidence 3334444444444333444433332223333 34567888776 9888877543221 111111 11 5678888
Q ss_pred CceEEEEecCCC
Q 031262 132 DCLTVGVRKQSK 143 (162)
Q Consensus 132 ~~pVlvv~~~~~ 143 (162)
+.||++..-+..
T Consensus 134 ~lPiilYn~P~~ 145 (311)
T 3h5d_A 134 DLPIIIYNIPGR 145 (311)
T ss_dssp SSCEEEEECHHH
T ss_pred CCCEEEEecccc
Confidence 999999876543
No 258
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=23.36 E-value=2.1e+02 Score=20.64 Aligned_cols=73 Identities=5% Similarity=-0.073 Sum_probs=39.1
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEE-EecCch--hHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALV-IQGPKL--GTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKAD 132 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v-~~g~~~--~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~ 132 (162)
..+.+.+++.+++ .+.++...- ..+++. ...++..-..++|.||+.......+.. + -.-+....
T Consensus 19 ~~~~~g~~~~~~~--~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~----------~-~~~a~~~g 85 (316)
T 1tjy_A 19 TSGGNGAQEAGKA--LGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCP----------A-LKRAMQRG 85 (316)
T ss_dssp HHHHHHHHHHHHH--HTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHH----------H-HHHHHHTT
T ss_pred HHHHHHHHHHHHH--hCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHH----------H-HHHHHHCc
Confidence 4555666666666 344443221 223442 234444456789999987654332111 1 12245678
Q ss_pred ceEEEEecC
Q 031262 133 CLTVGVRKQ 141 (162)
Q Consensus 133 ~pVlvv~~~ 141 (162)
+||+.+...
T Consensus 86 ipvV~~d~~ 94 (316)
T 1tjy_A 86 VKILTWDSD 94 (316)
T ss_dssp CEEEEESSC
T ss_pred CEEEEecCC
Confidence 999998654
No 259
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=23.21 E-value=2e+02 Score=20.22 Aligned_cols=67 Identities=3% Similarity=-0.024 Sum_probs=42.0
Q ss_pred chHHHHHHHHhHHHhCCCCe-EEEEEEecCc--hhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhC
Q 031262 55 CPYLANSLGSLCKACKPEVE-VEALVIQGPK--LGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKA 131 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~-~~~~v~~g~~--~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~ 131 (162)
..++.+.+++.+.+ .|.. +......++. ...+++.....++|-||+.. . .. +. +...
T Consensus 25 ~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~---------~~-----~~-~~~~ 84 (277)
T 3hs3_A 25 YAQIIDGIQEVIQK--EGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA---F---------TI-----PP-NFHL 84 (277)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---C---------CC-----CT-TCCC
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---h---------HH-----HH-HHhC
Confidence 45666777777777 4655 4333333343 34556777788999988876 1 11 22 4567
Q ss_pred CceEEEEecC
Q 031262 132 DCLTVGVRKQ 141 (162)
Q Consensus 132 ~~pVlvv~~~ 141 (162)
++||+.+...
T Consensus 85 ~iPvV~~~~~ 94 (277)
T 3hs3_A 85 NTPLVMYDSA 94 (277)
T ss_dssp SSCEEEESCC
T ss_pred CCCEEEEccc
Confidence 8999998765
No 260
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=23.21 E-value=2.2e+02 Score=20.80 Aligned_cols=75 Identities=5% Similarity=-0.073 Sum_probs=44.0
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEEecCch---hHHHHHHHh-cCCCEEEEccCCCCcccccccccCCcchhHHHhhhh
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVIQGPKL---GTVMSQVRK-LEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKK 130 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~---~~I~~~a~~-~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~ 130 (162)
...+.+.+++.+++ .|.++.+....+++. +.|.+...+ .++|-||+.. ....... . -.-+..
T Consensus 19 ~~~~~~g~~~~a~~--~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~~~~~~~------~-----~~~~~~ 84 (350)
T 3h75_A 19 WVSYSQFMQAAARD--LGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN-EQYVAPQ------I-----LRLSQG 84 (350)
T ss_dssp HHHHHHHHHHHHHH--HTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-CSSHHHH------H-----HHHHTT
T ss_pred HHHHHHHHHHHHHH--cCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-chhhHHH------H-----HHHHHh
Confidence 35666777777777 366666554445542 344455554 7899988854 2111111 1 223556
Q ss_pred CCceEEEEecCCC
Q 031262 131 ADCLTVGVRKQSK 143 (162)
Q Consensus 131 ~~~pVlvv~~~~~ 143 (162)
..+||+.+.....
T Consensus 85 ~giPvV~~~~~~~ 97 (350)
T 3h75_A 85 SGIKLFIVNSPLT 97 (350)
T ss_dssp SCCEEEEEESCCC
T ss_pred CCCcEEEEcCCCC
Confidence 7999999977544
No 261
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=23.12 E-value=1.7e+02 Score=19.51 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=25.3
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHh----cCCCEEEEc
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRK----LEVSVLVLG 103 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~----~~~dliVmG 103 (162)
+.-...+.++..+. +.++.....-+|..+.|.+..++ .++|+||..
T Consensus 30 Dsn~~~l~~~L~~~--G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 30 DKSGQLLHELLKEA--GHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp CHHHHHHHHHHHHH--TCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEE
T ss_pred cChHHHHHHHHHHC--CCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 33444556666653 56665444456654444444332 378998774
No 262
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=22.83 E-value=1.4e+02 Score=19.99 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=25.6
Q ss_pred CCcEEEEEe-CCChhhHHHHHHHHHhccC-CCCEEEEEEEeC
Q 031262 1 MRKRVMVVV-DQTSHSKHAMMWALTHVTN-KGDLLTLLHVVP 40 (162)
Q Consensus 1 m~~~Ilv~v-D~S~~s~~al~~A~~~a~~-~~~~l~l~hv~~ 40 (162)
|| +|++-. ..+..+....++..+-+.. .+.++.++.+.+
T Consensus 1 Mm-kilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~ 41 (198)
T 3b6i_A 1 MA-KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPE 41 (198)
T ss_dssp -C-EEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCC
T ss_pred CC-eEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccc
Confidence 55 444443 3344567788888877776 788888888764
No 263
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=22.82 E-value=2.1e+02 Score=23.29 Aligned_cols=79 Identities=10% Similarity=0.137 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHhccCC-CCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHH
Q 031262 13 SHSKHAMMWALTHVTNK-GDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQ 91 (162)
Q Consensus 13 ~~s~~al~~A~~~a~~~-~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~ 91 (162)
+.+++..++|.+.|.+. ..+|+++|=-...... .--..+.+++.+++ .+++.++...++ +..-.++.-
T Consensus 165 ~~ieRIar~AFe~A~~r~rkkVT~V~KaNVlk~s---------dGlfr~v~~eVa~e-YPdI~~e~~~VD-~~amqLV~~ 233 (496)
T 2d1c_A 165 KGSEKIVRFAFELARAEGRKKVHCATKSNIMKLA---------EGTLKRAFEQVAQE-YPDIEAVHIIVD-NAAHQLVKR 233 (496)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECTTTCTTH---------HHHHHHHHHHHHTT-CTTSEEEEEEHH-HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCCchhhH---------HHHHHHHHHHHHHH-CCCceEEEEeHH-HHHHHHhhC
Confidence 35678888888888876 5789999955443211 11334555666555 367777766542 223333333
Q ss_pred HHhcCCCEEEEcc
Q 031262 92 VRKLEVSVLVLGQ 104 (162)
Q Consensus 92 a~~~~~dliVmG~ 104 (162)
=. +.|.||+..
T Consensus 234 P~--~FDVIVt~N 244 (496)
T 2d1c_A 234 PE--QFEVIVTTN 244 (496)
T ss_dssp GG--GCSEEEECH
T ss_pred cC--cceEEEECC
Confidence 33 458777765
No 264
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=22.82 E-value=74 Score=23.05 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=21.2
Q ss_pred EEEEEEecCchhHHHHHHHhcCCCEEEEc
Q 031262 75 VEALVIQGPKLGTVMSQVRKLEVSVLVLG 103 (162)
Q Consensus 75 ~~~~v~~g~~~~~I~~~a~~~~~dliVmG 103 (162)
++-++..=|+.+.+++.|-+.++|+||.=
T Consensus 35 V~~I~~~lD~t~~vi~eAi~~~adlIitH 63 (247)
T 1nmo_A 35 VQKIVTGVTASQALLDEAVRLGADAVIVH 63 (247)
T ss_dssp CCEEEEEEECCHHHHHHHHHTTCSEEEEE
T ss_pred cCEEEEEEcCCHHHHHHHHhCCCCEEEEC
Confidence 34444455678889999999999988753
No 265
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=22.72 E-value=33 Score=27.21 Aligned_cols=51 Identities=10% Similarity=0.085 Sum_probs=32.5
Q ss_pred chHHHHHHHHhHHHhCCCCeEEEEEE------ecCchhHHHHHHH-hcCCCEEEEccCCC
Q 031262 55 CPYLANSLGSLCKACKPEVEVEALVI------QGPKLGTVMSQVR-KLEVSVLVLGQKKH 107 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~v~------~g~~~~~I~~~a~-~~~~dliVmG~~~~ 107 (162)
.+++.+.+++..+.+.+. +-.++. -|+..+.+++.++ +.++.+|.+-+.|.
T Consensus 82 ~ekL~~~i~~~~~~~~P~--~I~v~~TC~~~iIGdDi~~v~~~~~~~~~ipVi~v~~~Gf 139 (460)
T 2xdq_A 82 YEELKRLCLEIKRDRNPS--VIVWIGTCTTEIIKMDLEGLAPKLEAEIGIPIVVARANGL 139 (460)
T ss_dssp HHHHHHHHHHHHHHHCCS--EEEEEECHHHHHTTCCHHHHHHHHHHHHSSCEEEEECCTT
T ss_pred hHHHHHHHHHHHHhcCCC--EEEEECCCHHHHHhhCHHHHHHHHhhccCCcEEEEecCCc
Confidence 356667777777776555 322221 2667777777765 56788888877764
No 266
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=22.62 E-value=84 Score=24.32 Aligned_cols=50 Identities=8% Similarity=-0.015 Sum_probs=31.9
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCC
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
...+.++.+.+. -++.+-+..+.+.......+.+.+.++|.|+++.+|.+
T Consensus 174 ~~~~~i~~i~~~--~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g~GGt 223 (368)
T 3vkj_A 174 YALEKLRDISKE--LSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGT 223 (368)
T ss_dssp HHHHHHHHHHTT--CSSCEEEECSSSCCCHHHHHHHHHTTCCEEECCCBTSB
T ss_pred HHHHHHHHHHHH--cCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeCCCCC
Confidence 456667766665 24555443222223456677888999999999887653
No 267
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=22.60 E-value=2.7e+02 Score=21.46 Aligned_cols=79 Identities=14% Similarity=0.208 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHhccCC-CCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHhH-HHhCCCCeEEEEEEecCchhHHHH
Q 031262 13 SHSKHAMMWALTHVTNK-GDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSLC-KACKPEVEVEALVIQGPKLGTVMS 90 (162)
Q Consensus 13 ~~s~~al~~A~~~a~~~-~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~v~~g~~~~~I~~ 90 (162)
+.+++..++|.+.|.+. ..+|+++|=-...... ..-..+.+++.. ++ .+++.++...+ .+..-.++.
T Consensus 157 ~~~eRiar~AF~~A~~r~rkkVt~v~KaNvlk~s---------dglf~~~~~eva~~e-yp~i~~~~~~v-D~~~~qlv~ 225 (349)
T 3blx_A 157 PKTERIARFAFDFAKKYNRKSVTAVHKANIMKLG---------DGLFRNIITEIGQKE-YPDIDVSSIIV-DNASMQAVA 225 (349)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTH---------HHHHHHHHHHHHHHH-CTTSEEEEEEH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEeCCccchhh---------HHHHHHHHHHHHHhh-CCCeeEEEeeH-HHHHHHHhh
Confidence 35677888888888766 5689999955443211 123445667776 44 47788776664 222333333
Q ss_pred HHHhcCCCEEEEcc
Q 031262 91 QVRKLEVSVLVLGQ 104 (162)
Q Consensus 91 ~a~~~~~dliVmG~ 104 (162)
-=. +.|.||+..
T Consensus 226 ~P~--~FDVivt~N 237 (349)
T 3blx_A 226 KPH--QFDVLVTPS 237 (349)
T ss_dssp CGG--GCSEEEECH
T ss_pred Ccc--cccEEEECC
Confidence 333 458777655
No 268
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=22.36 E-value=2.5e+02 Score=21.10 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=11.2
Q ss_pred hhHHHHHHHhcCCCEEEEcc
Q 031262 85 LGTVMSQVRKLEVSVLVLGQ 104 (162)
Q Consensus 85 ~~~I~~~a~~~~~dliVmG~ 104 (162)
...++..+++.++|.|+++.
T Consensus 208 ~~~~l~~i~~~~~d~v~~~~ 227 (419)
T 3h5l_A 208 WGPTLAKLRADPPAVIVVTH 227 (419)
T ss_dssp CHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHHhcCCCEEEEcc
Confidence 44455555555666666653
No 269
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=22.30 E-value=71 Score=21.39 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=30.4
Q ss_pred HHHHHhHHHhCCCCeEEEEEEe-cCchhHHHHHHHhcCCCEEEEccCCCC
Q 031262 60 NSLGSLCKACKPEVEVEALVIQ-GPKLGTVMSQVRKLEVSVLVLGQKKHS 108 (162)
Q Consensus 60 ~~~~~~~~~~~~~v~~~~~v~~-g~~~~~I~~~a~~~~~dliVmG~~~~~ 108 (162)
..+..+... .|.++ .... ..+.+.+++.+.+.++|+|.+......
T Consensus 36 ~~va~~l~~--~G~eV--i~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~ 81 (161)
T 2yxb_A 36 KVVARALRD--AGFEV--VYTGLRQTPEQVAMAAVQEDVDVIGVSILNGA 81 (161)
T ss_dssp HHHHHHHHH--TTCEE--ECCCSBCCHHHHHHHHHHTTCSEEEEEESSSC
T ss_pred HHHHHHHHH--CCCEE--EECCCCCCHHHHHHHHHhcCCCEEEEEeechh
Confidence 344445554 46433 3222 246899999999999999999987544
No 270
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}
Probab=22.17 E-value=2.2e+02 Score=20.85 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=16.9
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHh
Q 031262 1 MRKRVMVVVDQTSHSKHAMMWALTH 25 (162)
Q Consensus 1 m~~~Ilv~vD~S~~s~~al~~A~~~ 25 (162)
|..++.|++|.. ....|++++-++
T Consensus 3 m~~~LivALD~~-~~~~al~l~~~l 26 (259)
T 3tfx_A 3 MDRPVIVALDLD-NEEQLNKILSKL 26 (259)
T ss_dssp -CCCEEEECCCS-CHHHHHHHHHTT
T ss_pred CCCCeEEEeCCC-CHHHHHHHHHHh
Confidence 567899999997 456666666554
No 271
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=22.10 E-value=75 Score=22.95 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=14.6
Q ss_pred HhcCCCEEEEccCCCCccc
Q 031262 93 RKLEVSVLVLGQKKHSAFI 111 (162)
Q Consensus 93 ~~~~~dliVmG~~~~~~~~ 111 (162)
++.++|-||+|..+...+.
T Consensus 171 ~~~gad~IVLGCTh~p~l~ 189 (245)
T 3qvl_A 171 KEDGSGAIVLGSGGMATLA 189 (245)
T ss_dssp HHSCCSEEEECCGGGGGGH
T ss_pred HhcCCCEEEECCCChHHHH
Confidence 3568999999998765444
No 272
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=21.91 E-value=97 Score=21.39 Aligned_cols=38 Identities=24% Similarity=0.167 Sum_probs=24.1
Q ss_pred CCcEEEEEe-CCChh--hHHHHHHHHHhccCCCCEEEEEEEe
Q 031262 1 MRKRVMVVV-DQTSH--SKHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 1 m~~~Ilv~v-D~S~~--s~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
|+|+|++-+ ..++. +...++|+.+++. .+.++.++...
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~-~~~~~~~idl~ 41 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAE-GRLEFHLLHIG 41 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHT-TTEEEEECCGG
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhcc-CCCEEEEEecc
Confidence 889987644 33333 4567788887764 46677777644
No 273
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=21.91 E-value=1.5e+02 Score=18.47 Aligned_cols=70 Identities=6% Similarity=0.011 Sum_probs=38.4
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhh-CCceE
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKK-ADCLT 135 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~-~~~pV 135 (162)
...+.++..... .+..+. .-...+...+..++..+|+|++...-.+. .+.++++.+... ..+||
T Consensus 14 ~~~~~l~~~L~~--~g~~v~----~~~~~~~a~~~l~~~~~dliild~~l~~~---------~g~~~~~~l~~~~~~~pi 78 (155)
T 1qkk_A 14 DLRKAMQQTLEL--AGFTVS----SFASATEALAGLSADFAGIVISDIRMPGM---------DGLALFRKILALDPDLPM 78 (155)
T ss_dssp HHHHHHHHHHHH--TTCEEE----EESCHHHHHHTCCTTCCSEEEEESCCSSS---------CHHHHHHHHHHHCTTSCE
T ss_pred HHHHHHHHHHHH--cCcEEE----EECCHHHHHHHHHhCCCCEEEEeCCCCCC---------CHHHHHHHHHhhCCCCCE
Confidence 344455555555 354332 22334555566777889999998764321 111222444443 36899
Q ss_pred EEEecC
Q 031262 136 VGVRKQ 141 (162)
Q Consensus 136 lvv~~~ 141 (162)
+++...
T Consensus 79 i~ls~~ 84 (155)
T 1qkk_A 79 ILVTGH 84 (155)
T ss_dssp EEEECG
T ss_pred EEEECC
Confidence 888653
No 274
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=21.56 E-value=88 Score=20.91 Aligned_cols=36 Identities=6% Similarity=0.170 Sum_probs=27.0
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEe
Q 031262 3 KRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 3 ~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
+.+++.+..|..+...++ +++.++..|+++..+.-.
T Consensus 80 ~d~vI~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~~ 115 (186)
T 1m3s_A 80 GDLVIIGSGSGETKSLIH-TAAKAKSLHGIVAALTIN 115 (186)
T ss_dssp TCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEcCCCCcHHHHH-HHHHHHHCCCEEEEEECC
Confidence 568899999988877665 455677888888777643
No 275
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=21.45 E-value=1.2e+02 Score=22.89 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=40.7
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecC-chhHHHHHHHhcCCCEEEEccCCCCcccc-cccccC-C--cchhHHHhhhh
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGP-KLGTVMSQVRKLEVSVLVLGQKKHSAFIN-CFCGTS-S--SEEFVDQCIKK 130 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~-~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~Gs~-~--~~~~~~~v~~~ 130 (162)
....+.++.+.+.+ ++..+ ..|. ......+.+.+..+|.|++|.++...+.. ...|.. . +-..+..+.+.
T Consensus 134 ~~~~~~i~~lr~~~-~~~~v----i~G~v~s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~ 208 (336)
T 1ypf_A 134 NAVINMIQHIKKHL-PESFV----IAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA 208 (336)
T ss_dssp HHHHHHHHHHHHHC-TTSEE----EEEEECSHHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCCEE----EECCcCCHHHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHH
Confidence 34455566666653 22222 1232 23456677788899999998876432211 111111 1 11222455566
Q ss_pred CCceEEEE
Q 031262 131 ADCLTVGV 138 (162)
Q Consensus 131 ~~~pVlvv 138 (162)
.++||+.-
T Consensus 209 ~~ipVIa~ 216 (336)
T 1ypf_A 209 ASKPIIAD 216 (336)
T ss_dssp CSSCEEEE
T ss_pred cCCcEEEe
Confidence 68888874
No 276
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=21.41 E-value=1.1e+02 Score=20.94 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=23.5
Q ss_pred CCcEEEEEeCCCh----hhHHHHHHHHHhccCCCCEEEEEEEeC
Q 031262 1 MRKRVMVVVDQTS----HSKHAMMWALTHVTNKGDLLTLLHVVP 40 (162)
Q Consensus 1 m~~~Ilv~vD~S~----~s~~al~~A~~~a~~~~~~l~l~hv~~ 40 (162)
||+|||+-. +|+ .+...++++.+.+. .+.++.++...+
T Consensus 1 MM~kilii~-gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~ 42 (192)
T 3fvw_A 1 MSKRILFIV-GSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDR 42 (192)
T ss_dssp --CEEEEEE-SCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSS
T ss_pred CCCEEEEEE-cCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCcc
Confidence 677777644 443 35667778777765 567887776653
No 277
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=20.95 E-value=1.4e+02 Score=17.74 Aligned_cols=73 Identities=12% Similarity=-0.011 Sum_probs=40.9
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhh---CC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKK---AD 132 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~---~~ 132 (162)
....+.+++.... .+. ++. .-...+...+..++..+|+|++...-.+. .+.++++.+-.. ..
T Consensus 13 ~~~~~~l~~~L~~--~g~--~v~--~~~~~~~a~~~l~~~~~dlii~D~~l~~~---------~g~~~~~~l~~~~~~~~ 77 (127)
T 3i42_A 13 QAAAETFKELLEM--LGF--QAD--YVMSGTDALHAMSTRGYDAVFIDLNLPDT---------SGLALVKQLRALPMEKT 77 (127)
T ss_dssp HHHHHHHHHHHHH--TTE--EEE--EESSHHHHHHHHHHSCCSEEEEESBCSSS---------BHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHH--cCC--CEE--EECCHHHHHHHHHhcCCCEEEEeCCCCCC---------CHHHHHHHHHhhhccCC
Confidence 3445556666665 343 222 22334555566777889999999864321 111222444443 56
Q ss_pred ceEEEEecCCC
Q 031262 133 CLTVGVRKQSK 143 (162)
Q Consensus 133 ~pVlvv~~~~~ 143 (162)
+||+++.....
T Consensus 78 ~~ii~~s~~~~ 88 (127)
T 3i42_A 78 SKFVAVSGFAK 88 (127)
T ss_dssp CEEEEEECC-C
T ss_pred CCEEEEECCcc
Confidence 89999876543
No 278
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=20.85 E-value=57 Score=23.61 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=19.0
Q ss_pred EEEEecCchhHHHHHHHhcCCCEEEE
Q 031262 77 ALVIQGPKLGTVMSQVRKLEVSVLVL 102 (162)
Q Consensus 77 ~~v~~g~~~~~I~~~a~~~~~dliVm 102 (162)
-++..=|+.+.+++.|-+.++|+||.
T Consensus 38 ~I~~alD~t~~vi~eAi~~~adlIit 63 (242)
T 2yyb_A 38 KVGAAVDAGEAIFRKALEEEVDFLIV 63 (242)
T ss_dssp CEEEEEECSHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEcCCHHHHHHHHHCCCCEEEE
Confidence 33444566888888888889998765
No 279
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=20.60 E-value=1.7e+02 Score=18.38 Aligned_cols=71 Identities=4% Similarity=-0.081 Sum_probs=39.5
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhh---CC
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKK---AD 132 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~---~~ 132 (162)
....+.+++.... .+..+ .. .. ..+...+.+++..+|+|++...-.+. .+-++++.+-.. ..
T Consensus 17 ~~~~~~l~~~L~~--~g~~v--~~-~~-~~~~al~~l~~~~~dlii~D~~l~~~---------~g~~~~~~lr~~~~~~~ 81 (154)
T 3gt7_A 17 PTQAEHLKHILEE--TGYQT--EH-VR-NGREAVRFLSLTRPDLIISDVLMPEM---------DGYALCRWLKGQPDLRT 81 (154)
T ss_dssp HHHHHHHHHHHHT--TTCEE--EE-ES-SHHHHHHHHTTCCCSEEEEESCCSSS---------CHHHHHHHHHHSTTTTT
T ss_pred HHHHHHHHHHHHH--CCCEE--EE-eC-CHHHHHHHHHhCCCCEEEEeCCCCCC---------CHHHHHHHHHhCCCcCC
Confidence 4445556666555 34333 22 23 34455566778899999999864321 111222444433 46
Q ss_pred ceEEEEecC
Q 031262 133 CLTVGVRKQ 141 (162)
Q Consensus 133 ~pVlvv~~~ 141 (162)
+|++++...
T Consensus 82 ~pii~~s~~ 90 (154)
T 3gt7_A 82 IPVILLTIL 90 (154)
T ss_dssp SCEEEEECC
T ss_pred CCEEEEECC
Confidence 888888654
No 280
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=20.56 E-value=2e+02 Score=21.66 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=25.9
Q ss_pred hhHHHHHHHhcCC---CEEE-EccCCCCcccccccccCCcchhHHHhh--hhCCceEEEEecC
Q 031262 85 LGTVMSQVRKLEV---SVLV-LGQKKHSAFINCFCGTSSSEEFVDQCI--KKADCLTVGVRKQ 141 (162)
Q Consensus 85 ~~~I~~~a~~~~~---dliV-mG~~~~~~~~~~~~Gs~~~~~~~~~v~--~~~~~pVlvv~~~ 141 (162)
.+.+.+.+.+.++ |+|| +|.- |+. +.+..+. -.-.+|++.||-.
T Consensus 71 v~~~~~~~~~~~~~r~d~iIavGGG-----------sv~--D~ak~~A~~~~rgip~i~IPTT 120 (343)
T 3clh_A 71 LERILNNAFEMQLNRHSLMIALGGG-----------VIS--DMVGFASSIYFRGIDFINIPTT 120 (343)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEEESH-----------HHH--HHHHHHHHHBTTCCEEEEEECS
T ss_pred HHHHHHHHHhcCCCCCceEEEECCh-----------HHH--HHHHHHHHHhccCCCEEEeCCc
Confidence 4667777788888 7766 4441 111 1114444 3457888888765
No 281
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=20.52 E-value=2.1e+02 Score=20.59 Aligned_cols=35 Identities=11% Similarity=-0.054 Sum_probs=26.5
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhccCCCCEEEEEEEe
Q 031262 2 RKRVMVVVDQTSHSKHAMMWALTHVTNKGDLLTLLHVV 39 (162)
Q Consensus 2 ~~~Ilv~vD~S~~s~~al~~A~~~a~~~~~~l~l~hv~ 39 (162)
.+++++++.|..+|.-++.++.+.. +.++..+|+-
T Consensus 25 ~~~vvv~lSGGiDSsv~~~l~~~~~---~~~v~av~~~ 59 (268)
T 1xng_A 25 FKKVVYGLSGGLDSAVVGVLCQKVF---KENAHALLMP 59 (268)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHH---GGGEEEEECC
T ss_pred CCCEEEEccCcHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 4679999999999988888777654 3457777764
No 282
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=20.38 E-value=1.3e+02 Score=23.29 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=30.8
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecC-chhHHHHHHHhcCCCEEEEccCCCCcc
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGP-KLGTVMSQVRKLEVSVLVLGQKKHSAF 110 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~-~~~~I~~~a~~~~~dliVmG~~~~~~~ 110 (162)
+...+.++.+++.. ++.+-+.-+ |. ......+.+.+.++|.|+++.+|.+.+
T Consensus 192 ~~~~~~I~~l~~~~--~~PVivK~v-g~g~s~e~A~~l~~aGad~I~V~g~GGt~~ 244 (365)
T 3sr7_A 192 RSWKKHLSDYAKKL--QLPFILKEV-GFGMDVKTIQTAIDLGVKTVDISGRGGTSF 244 (365)
T ss_dssp HHHHHHHHHHHHHC--CSCEEEEEC-SSCCCHHHHHHHHHHTCCEEECCCBC----
T ss_pred HHHHHHHHHHHHhh--CCCEEEEEC-CCCCCHHHHHHHHHcCCCEEEEeCCCCccc
Confidence 45667777777763 445544422 21 233456667788999999988765433
No 283
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=20.37 E-value=2.4e+02 Score=20.06 Aligned_cols=42 Identities=17% Similarity=0.089 Sum_probs=24.1
Q ss_pred HHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEc-cC
Q 031262 61 SLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLG-QK 105 (162)
Q Consensus 61 ~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG-~~ 105 (162)
.++++..+ .+.++.+.+--|=..+.+.+. .+.++|.+|+| +.
T Consensus 156 ~lr~~~~~--~~~~~~I~VdGGI~~~~~~~~-~~aGAd~~V~G~sa 198 (231)
T 3ctl_A 156 ELKAWRER--EGLEYEIEVDGSCNQATYEKL-MAAGADVFIVGTSG 198 (231)
T ss_dssp HHHHHHHH--HTCCCEEEEESCCSTTTHHHH-HHHTCCEEEECTTT
T ss_pred HHHHHHhc--cCCCceEEEECCcCHHHHHHH-HHcCCCEEEEccHH
Confidence 34444443 334455565444345555555 44579999999 53
No 284
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=20.31 E-value=2.3e+02 Score=19.80 Aligned_cols=71 Identities=13% Similarity=0.032 Sum_probs=40.2
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCceE
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADCLT 135 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~pV 135 (162)
....+.++..... .+..+ ..-...+..++.+.+..+|+|++...-.+. -| -++++.+.....+||
T Consensus 47 ~~~~~~l~~~L~~--~g~~v----~~~~~~~~al~~~~~~~~DlvllD~~lp~~-----~G----~~l~~~lr~~~~~~i 111 (249)
T 3q9s_A 47 HDIANVLRMDLTD--AGYVV----DHADSAMNGLIKAREDHPDLILLDLGLPDF-----DG----GDVVQRLRKNSALPI 111 (249)
T ss_dssp HHHHHHHHHHHHT--TTCEE----EEESSHHHHHHHHHHSCCSEEEEECCSCHH-----HH----HHHHHHHHTTCCCCE
T ss_pred HHHHHHHHHHHHH--CCCEE----EEeCCHHHHHHHHhcCCCCEEEEcCCCCCC-----CH----HHHHHHHHcCCCCCE
Confidence 4445556665555 34322 223334445566777889999998764321 11 122255555567899
Q ss_pred EEEecC
Q 031262 136 VGVRKQ 141 (162)
Q Consensus 136 lvv~~~ 141 (162)
+++...
T Consensus 112 I~lt~~ 117 (249)
T 3q9s_A 112 IVLTAR 117 (249)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 988664
No 285
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=20.30 E-value=90 Score=19.66 Aligned_cols=44 Identities=11% Similarity=0.263 Sum_probs=24.4
Q ss_pred HHHHHhHHHhCCCCeEEEEEEecCchh-HHH-HHHHhcCCCEEEEccCCC
Q 031262 60 NSLGSLCKACKPEVEVEALVIQGPKLG-TVM-SQVRKLEVSVLVLGQKKH 107 (162)
Q Consensus 60 ~~~~~~~~~~~~~v~~~~~v~~g~~~~-~I~-~~a~~~~~dliVmG~~~~ 107 (162)
+.|++.+.+ .|+++.++.......+ .|. +.++ ++|+||+.....
T Consensus 23 eaL~~aA~~--~G~~ikVEtqGs~G~~n~Lt~~~I~--~Ad~VIiA~d~~ 68 (106)
T 2r48_A 23 ENLQKAADR--LGVSIKVETQGGIGVENKLTEEEIR--EADAIIIAADRS 68 (106)
T ss_dssp HHHHHHHHH--HTCEEEEEEEETTEEESCCCHHHHH--HCSEEEEEESSC
T ss_pred HHHHHHHHH--CCCeEEEEecCCCCccCCCCHHHHH--hCCEEEEEeCCc
Confidence 456666666 4666666663322222 222 2344 679999988754
No 286
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=20.24 E-value=2.1e+02 Score=22.22 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhccCC-------------CCEEEEEEEeCCCCCCCCCCCccccchHHHHHHHHh---HHHhCCCCeEEE
Q 031262 14 HSKHAMMWALTHVTNK-------------GDLLTLLHVVPPPKPNTSHHDSSACCPYLANSLGSL---CKACKPEVEVEA 77 (162)
Q Consensus 14 ~s~~al~~A~~~a~~~-------------~~~l~l~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~ 77 (162)
.+++..++|.++|.+. ..+|+++|=-...... ..-..+..++. +++| +++.++.
T Consensus 163 ~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s---------~glf~~~~~ev~~~a~ey-pdV~~~~ 232 (366)
T 3ty4_A 163 ASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVT---------DGLFRESCRHAQSLDPSY-ASINVDE 232 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTH---------HHHHHHHHHHHGGGCGGG-TTSEEEE
T ss_pred HHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhH---------HHHHHHHHHHHHHhHhhC-CCceEEe
Confidence 4566666666666544 5689999854333111 11333455665 4554 6787776
Q ss_pred EEEecCchhHHHHHHHhcCCCEEEEcc
Q 031262 78 LVIQGPKLGTVMSQVRKLEVSVLVLGQ 104 (162)
Q Consensus 78 ~v~~g~~~~~I~~~a~~~~~dliVmG~ 104 (162)
..+ .+..-.++.-=+ +.|.||...
T Consensus 233 ~~V-D~~am~lv~~P~--~FDViVt~N 256 (366)
T 3ty4_A 233 QIV-DSMVYRLFREPE--CFDVVVAPN 256 (366)
T ss_dssp EEH-HHHHHHHHHCGG--GCSEEEECH
T ss_pred eeH-HHHHHHHHhCcc--cCcEEEECc
Confidence 653 222334443333 458777654
No 287
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=20.13 E-value=2.4e+02 Score=20.06 Aligned_cols=73 Identities=8% Similarity=-0.036 Sum_probs=39.6
Q ss_pred hHHHHHHHHhHHHhCCCCeEEEEEEecCch--hHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhhCCc
Q 031262 56 PYLANSLGSLCKACKPEVEVEALVIQGPKL--GTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKKADC 133 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~v~~g~~~--~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~~~~ 133 (162)
..+.+.+++.+.+ .|..+.+.-..+++. ...++...+.++|-||+.......... . -.-+....+
T Consensus 18 ~~~~~gi~~~a~~--~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~----------~-~~~~~~~~i 84 (306)
T 2vk2_A 18 AAETNVAKSEAEK--RGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEP----------V-LKEAKDAEI 84 (306)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHH----------H-HHHHHHTTC
T ss_pred HHHHHHHHHHHHH--cCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHH----------H-HHHHHHCCC
Confidence 4555566666666 355544333233442 344555556789998886543221111 1 122455789
Q ss_pred eEEEEecC
Q 031262 134 LTVGVRKQ 141 (162)
Q Consensus 134 pVlvv~~~ 141 (162)
||+++...
T Consensus 85 PvV~~~~~ 92 (306)
T 2vk2_A 85 PVFLLDRS 92 (306)
T ss_dssp CEEEESSC
T ss_pred CEEEecCC
Confidence 99998654
No 288
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=20.01 E-value=1.5e+02 Score=17.57 Aligned_cols=70 Identities=9% Similarity=0.103 Sum_probs=36.7
Q ss_pred HHHHHHHHhHHHhCCCCeEEEEEEecCchhHHHHHHHhcCCCEEEEccCCCCcccccccccCCcchhHHHhhhh---CCc
Q 031262 57 YLANSLGSLCKACKPEVEVEALVIQGPKLGTVMSQVRKLEVSVLVLGQKKHSAFINCFCGTSSSEEFVDQCIKK---ADC 133 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~v~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~Gs~~~~~~~~~v~~~---~~~ 133 (162)
...+.++..... .+..+. .-...+...+..++..+|++++...-.+. . | .++++.+-.. ..+
T Consensus 13 ~~~~~l~~~l~~--~g~~v~----~~~~~~~a~~~~~~~~~dlvi~D~~l~~~-~----g----~~~~~~l~~~~~~~~~ 77 (127)
T 2jba_A 13 PIREMVCFVLEQ--NGFQPV----EAEDYDSAVNQLNEPWPDLILLAWMLPGG-S----G----IQFIKHLRRESMTRDI 77 (127)
T ss_dssp HHHHHHHHHHHH--TTCEEE----EECSHHHHHTTCSSSCCSEEEEESEETTE-E----H----HHHHHHHHTSTTTTTS
T ss_pred HHHHHHHHHHHH--CCceEE----EeCCHHHHHHHHhccCCCEEEEecCCCCC-C----H----HHHHHHHHhCcccCCC
Confidence 344455555554 344332 22233444466677789999998753321 1 1 1122444333 468
Q ss_pred eEEEEecC
Q 031262 134 LTVGVRKQ 141 (162)
Q Consensus 134 pVlvv~~~ 141 (162)
|++++...
T Consensus 78 ~ii~~s~~ 85 (127)
T 2jba_A 78 PVVMLTAR 85 (127)
T ss_dssp CEEEEEET
T ss_pred CEEEEeCC
Confidence 99888553
Done!