Query 031263
Match_columns 162
No_of_seqs 119 out of 1350
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 11:37:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 9.9E-42 2.2E-46 229.9 14.8 157 4-160 3-159 (205)
2 KOG0078 GTP-binding protein SE 100.0 9E-38 1.9E-42 213.4 15.9 154 6-159 8-161 (207)
3 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 8.3E-38 1.8E-42 210.5 15.2 154 3-156 15-169 (221)
4 KOG0098 GTPase Rab2, small G p 100.0 7E-38 1.5E-42 209.4 14.3 152 7-159 3-154 (216)
5 KOG0092 GTPase Rab5/YPT51 and 100.0 1.6E-37 3.4E-42 208.9 15.1 152 8-159 3-154 (200)
6 KOG0080 GTPase Rab18, small G 100.0 2.6E-36 5.5E-41 197.5 13.9 152 5-156 6-158 (209)
7 cd04121 Rab40 Rab40 subfamily. 100.0 3.6E-35 7.7E-40 204.3 18.2 151 7-158 3-153 (189)
8 cd04120 Rab12 Rab12 subfamily. 100.0 4.9E-35 1.1E-39 205.4 18.3 147 11-157 1-148 (202)
9 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.2E-35 2.7E-40 202.4 14.5 155 5-159 9-163 (222)
10 KOG0093 GTPase Rab3, small G p 100.0 9.2E-36 2E-40 192.3 12.5 153 7-159 18-170 (193)
11 KOG0079 GTP-binding protein H- 100.0 2.1E-35 4.5E-40 190.9 11.0 152 7-159 5-156 (198)
12 KOG0394 Ras-related GTPase [Ge 100.0 3.4E-35 7.4E-40 196.1 11.9 153 7-159 6-165 (210)
13 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 7.2E-34 1.6E-38 196.7 17.4 151 7-159 2-166 (182)
14 KOG0086 GTPase Rab4, small G p 100.0 1.5E-34 3.3E-39 188.0 13.1 154 6-159 5-158 (214)
15 cd04122 Rab14 Rab14 subfamily. 100.0 1.4E-33 3E-38 192.6 17.8 149 10-158 2-150 (166)
16 cd04133 Rop_like Rop subfamily 100.0 1.3E-33 2.7E-38 194.5 17.1 145 11-157 2-158 (176)
17 KOG0095 GTPase Rab30, small G 100.0 1.4E-34 3E-39 187.5 11.4 150 6-155 3-152 (213)
18 cd04131 Rnd Rnd subfamily. Th 100.0 3.6E-33 7.7E-38 192.7 17.4 147 10-158 1-161 (178)
19 cd04117 Rab15 Rab15 subfamily. 100.0 8.6E-33 1.9E-37 188.0 18.1 148 11-158 1-148 (161)
20 cd01867 Rab8_Rab10_Rab13_like 100.0 9.3E-33 2E-37 188.7 17.6 149 9-157 2-150 (167)
21 cd01865 Rab3 Rab3 subfamily. 100.0 1.1E-32 2.4E-37 188.0 17.8 147 11-157 2-148 (165)
22 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.5E-32 3.2E-37 188.7 16.6 148 10-158 2-150 (172)
23 cd01875 RhoG RhoG subfamily. 100.0 2.3E-32 5.1E-37 190.7 17.8 146 10-157 3-162 (191)
24 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.7E-32 5.8E-37 194.7 18.2 150 6-157 9-172 (232)
25 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.8E-32 6E-37 191.7 18.0 147 11-157 1-153 (201)
26 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3E-32 6.5E-37 185.9 17.7 148 10-157 2-149 (166)
27 PF00071 Ras: Ras family; Int 100.0 3.3E-32 7.2E-37 184.9 16.6 146 12-157 1-146 (162)
28 cd04119 RJL RJL (RabJ-Like) su 100.0 5.6E-32 1.2E-36 184.3 17.5 148 11-158 1-153 (168)
29 cd01866 Rab2 Rab2 subfamily. 100.0 9.7E-32 2.1E-36 183.9 18.1 150 9-158 3-152 (168)
30 cd04127 Rab27A Rab27a subfamil 100.0 7E-32 1.5E-36 186.3 17.2 149 9-157 3-162 (180)
31 cd01874 Cdc42 Cdc42 subfamily. 100.0 7.1E-32 1.5E-36 185.8 17.1 147 10-158 1-161 (175)
32 cd01864 Rab19 Rab19 subfamily. 100.0 8.4E-32 1.8E-36 183.6 17.3 149 9-158 2-151 (165)
33 cd04113 Rab4 Rab4 subfamily. 100.0 1E-31 2.2E-36 182.4 17.5 147 11-157 1-147 (161)
34 cd01868 Rab11_like Rab11-like. 100.0 1.3E-31 2.8E-36 182.5 17.8 148 10-157 3-150 (165)
35 cd04110 Rab35 Rab35 subfamily. 100.0 1.3E-31 2.8E-36 188.0 17.9 149 8-157 4-152 (199)
36 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.1E-31 2.4E-36 185.9 16.8 146 11-157 1-151 (182)
37 cd04125 RabA_like RabA-like su 100.0 1.9E-31 4.2E-36 185.5 18.1 147 11-157 1-147 (188)
38 KOG0091 GTPase Rab39, small G 100.0 4.7E-33 1E-37 182.7 9.3 150 10-159 8-160 (213)
39 PLN03110 Rab GTPase; Provision 100.0 2E-31 4.3E-36 189.3 18.4 152 7-158 9-160 (216)
40 PTZ00369 Ras-like protein; Pro 100.0 2E-31 4.2E-36 185.7 17.1 149 9-158 4-153 (189)
41 cd04106 Rab23_lke Rab23-like s 100.0 2.8E-31 6E-36 180.3 17.2 146 11-157 1-148 (162)
42 cd04116 Rab9 Rab9 subfamily. 100.0 4.2E-31 9.2E-36 180.9 18.0 149 7-156 2-155 (170)
43 cd04109 Rab28 Rab28 subfamily. 100.0 3.3E-31 7.2E-36 188.0 17.8 147 11-157 1-151 (215)
44 cd04136 Rap_like Rap-like subf 100.0 3.2E-31 6.9E-36 180.0 16.7 147 10-157 1-148 (163)
45 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 5.5E-31 1.2E-35 180.6 17.6 146 12-157 2-150 (170)
46 PLN03071 GTP-binding nuclear p 100.0 6E-31 1.3E-35 187.1 18.2 147 8-157 11-157 (219)
47 cd04176 Rap2 Rap2 subgroup. T 100.0 4.3E-31 9.2E-36 179.6 16.8 147 10-157 1-148 (163)
48 cd04115 Rab33B_Rab33A Rab33B/R 100.0 6.3E-31 1.4E-35 180.2 17.6 148 9-156 1-150 (170)
49 cd04175 Rap1 Rap1 subgroup. T 100.0 4.7E-31 1E-35 179.7 16.6 147 10-157 1-148 (164)
50 KOG0081 GTPase Rab27, small G 100.0 1.3E-33 2.8E-38 184.7 3.7 156 4-159 3-168 (219)
51 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 5.7E-31 1.2E-35 186.9 17.3 148 10-159 1-162 (222)
52 cd04112 Rab26 Rab26 subfamily. 100.0 9.3E-31 2E-35 182.6 17.1 147 11-157 1-148 (191)
53 cd04111 Rab39 Rab39 subfamily. 100.0 1E-30 2.2E-35 185.0 17.5 149 10-158 2-152 (211)
54 smart00175 RAB Rab subfamily o 100.0 1.4E-30 3.1E-35 176.9 17.6 148 11-158 1-148 (164)
55 cd01861 Rab6 Rab6 subfamily. 100.0 1.5E-30 3.3E-35 176.4 17.6 147 11-157 1-147 (161)
56 PLN03108 Rab family protein; P 100.0 1.6E-30 3.5E-35 183.9 18.1 150 8-157 4-153 (210)
57 cd04144 Ras2 Ras2 subfamily. 100.0 6.2E-31 1.3E-35 183.4 15.6 146 12-158 1-149 (190)
58 cd01871 Rac1_like Rac1-like su 100.0 1.4E-30 3.1E-35 179.2 17.1 147 10-158 1-161 (174)
59 cd00877 Ran Ran (Ras-related n 100.0 2.7E-30 5.9E-35 176.5 17.8 145 11-158 1-145 (166)
60 cd04124 RabL2 RabL2 subfamily. 100.0 2.8E-30 6.2E-35 175.5 17.4 145 11-159 1-145 (161)
61 cd04126 Rab20 Rab20 subfamily. 100.0 2.4E-30 5.2E-35 183.6 17.0 131 11-146 1-150 (220)
62 cd04140 ARHI_like ARHI subfami 100.0 3.4E-30 7.3E-35 175.8 17.1 147 11-158 2-151 (165)
63 cd01860 Rab5_related Rab5-rela 100.0 4.8E-30 1E-34 174.3 17.8 148 10-157 1-148 (163)
64 cd04102 RabL3 RabL3 (Rab-like3 100.0 3.3E-30 7.3E-35 180.7 17.4 146 11-157 1-174 (202)
65 cd04145 M_R_Ras_like M-Ras/R-R 100.0 4.7E-30 1E-34 174.4 17.5 148 9-157 1-149 (164)
66 cd04138 H_N_K_Ras_like H-Ras/N 100.0 5.2E-30 1.1E-34 173.6 17.0 146 10-157 1-147 (162)
67 KOG0097 GTPase Rab14, small G 100.0 1.1E-30 2.3E-35 168.3 12.3 156 3-158 4-159 (215)
68 smart00173 RAS Ras subfamily o 100.0 4.9E-30 1.1E-34 174.5 16.3 146 11-157 1-147 (164)
69 cd04101 RabL4 RabL4 (Rab-like4 100.0 9.7E-30 2.1E-34 173.0 17.3 146 11-157 1-149 (164)
70 cd04134 Rho3 Rho3 subfamily. 100.0 7.2E-30 1.6E-34 177.9 17.1 145 11-157 1-159 (189)
71 cd04114 Rab30 Rab30 subfamily. 100.0 1.9E-29 4.1E-34 172.4 18.8 154 6-159 3-156 (169)
72 cd04132 Rho4_like Rho4-like su 100.0 7.6E-30 1.7E-34 177.2 16.9 145 11-157 1-152 (187)
73 smart00176 RAN Ran (Ras-relate 100.0 7E-30 1.5E-34 179.0 16.4 140 16-158 1-140 (200)
74 cd04118 Rab24 Rab24 subfamily. 100.0 1.5E-29 3.2E-34 176.6 18.0 146 11-157 1-151 (193)
75 cd04123 Rab21 Rab21 subfamily. 100.0 2E-29 4.2E-34 170.8 17.7 147 11-157 1-147 (162)
76 cd01892 Miro2 Miro2 subfamily. 100.0 4.7E-30 1E-34 175.9 14.5 148 8-157 2-151 (169)
77 cd04143 Rhes_like Rhes_like su 100.0 9E-30 1.9E-34 183.7 16.5 146 11-157 1-156 (247)
78 KOG0088 GTPase Rab21, small G 100.0 2.9E-31 6.3E-36 173.6 7.6 153 6-158 9-161 (218)
79 cd04142 RRP22 RRP22 subfamily. 100.0 2.8E-29 6.1E-34 176.0 17.4 148 11-158 1-160 (198)
80 cd04103 Centaurin_gamma Centau 100.0 2.4E-29 5.2E-34 170.6 16.4 141 11-158 1-145 (158)
81 PLN03118 Rab family protein; P 100.0 5.8E-29 1.3E-33 176.1 18.5 152 5-157 9-162 (211)
82 cd01862 Rab7 Rab7 subfamily. 100.0 5.2E-29 1.1E-33 170.5 17.6 148 11-158 1-153 (172)
83 PLN00023 GTP-binding protein; 100.0 2.6E-29 5.6E-34 184.7 17.0 141 7-147 18-189 (334)
84 cd01873 RhoBTB RhoBTB subfamil 100.0 3.2E-29 7E-34 175.2 16.4 146 10-158 2-182 (195)
85 cd01863 Rab18 Rab18 subfamily. 100.0 9.8E-29 2.1E-33 167.6 17.6 147 11-158 1-148 (161)
86 smart00174 RHO Rho (Ras homolo 100.0 5.4E-29 1.2E-33 171.0 16.4 144 13-159 1-158 (174)
87 cd04146 RERG_RasL11_like RERG/ 100.0 2.8E-29 6.1E-34 171.1 14.8 145 12-157 1-148 (165)
88 cd00154 Rab Rab family. Rab G 100.0 1.1E-28 2.3E-33 166.1 17.4 147 11-157 1-147 (159)
89 cd04130 Wrch_1 Wrch-1 subfamil 100.0 7.9E-29 1.7E-33 170.3 16.9 145 11-157 1-159 (173)
90 cd04148 RGK RGK subfamily. Th 100.0 9.1E-29 2E-33 176.1 16.6 146 11-158 1-149 (221)
91 cd04177 RSR1 RSR1 subgroup. R 100.0 1.9E-28 4.1E-33 167.6 17.3 147 10-157 1-149 (168)
92 cd04135 Tc10 TC10 subfamily. 100.0 1.9E-28 4E-33 168.3 16.6 147 11-159 1-160 (174)
93 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 5.4E-29 1.2E-33 169.8 13.4 140 12-156 1-144 (164)
94 KOG0395 Ras-related GTPase [Ge 100.0 2.3E-28 4.9E-33 170.4 14.0 148 9-157 2-150 (196)
95 KOG0083 GTPase Rab26/Rab37, sm 100.0 1.4E-30 3.1E-35 166.0 1.9 145 14-158 1-146 (192)
96 cd04149 Arf6 Arf6 subfamily. 100.0 8.7E-28 1.9E-32 164.5 15.3 143 8-157 7-155 (168)
97 cd01870 RhoA_like RhoA-like su 100.0 1.6E-27 3.4E-32 163.8 16.1 146 10-157 1-160 (175)
98 cd04139 RalA_RalB RalA/RalB su 100.0 3.3E-27 7.1E-32 160.2 16.5 147 11-158 1-148 (164)
99 cd00876 Ras Ras family. The R 100.0 3.1E-27 6.7E-32 159.7 15.9 146 12-158 1-147 (160)
100 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2.2E-27 4.7E-32 161.1 14.7 115 11-130 1-116 (159)
101 smart00177 ARF ARF-like small 100.0 1.4E-27 3E-32 164.4 14.0 118 8-130 11-129 (175)
102 PLN00223 ADP-ribosylation fact 100.0 3.4E-27 7.3E-32 163.4 15.5 119 8-131 15-134 (181)
103 PTZ00132 GTP-binding nuclear p 100.0 1.1E-26 2.3E-31 164.9 18.2 151 5-158 4-154 (215)
104 cd04137 RheB Rheb (Ras Homolog 100.0 7.5E-27 1.6E-31 161.2 16.1 146 11-157 2-148 (180)
105 cd04129 Rho2 Rho2 subfamily. 100.0 1.3E-26 2.8E-31 161.2 16.4 147 10-159 1-159 (187)
106 cd04147 Ras_dva Ras-dva subfam 100.0 1.3E-26 2.8E-31 162.5 16.5 145 12-157 1-148 (198)
107 cd00157 Rho Rho (Ras homology) 100.0 2.2E-26 4.8E-31 157.3 16.8 144 11-156 1-157 (171)
108 cd04154 Arl2 Arl2 subfamily. 99.9 2.1E-26 4.4E-31 158.2 16.4 145 6-157 10-160 (173)
109 PTZ00133 ADP-ribosylation fact 99.9 8.2E-27 1.8E-31 161.6 13.8 117 8-129 15-132 (182)
110 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 2.4E-26 5.1E-31 159.4 15.6 119 10-129 3-123 (183)
111 cd04161 Arl2l1_Arl13_like Arl2 99.9 2.4E-26 5.3E-31 157.1 14.5 116 12-132 1-117 (167)
112 cd04158 ARD1 ARD1 subfamily. 99.9 4.8E-26 1E-30 155.9 15.7 124 12-142 1-125 (169)
113 cd01893 Miro1 Miro1 subfamily. 99.9 4.3E-26 9.2E-31 155.7 14.9 119 11-132 1-120 (166)
114 cd04157 Arl6 Arl6 subfamily. 99.9 5E-26 1.1E-30 154.3 13.6 115 12-130 1-119 (162)
115 KOG0393 Ras-related small GTPa 99.9 5.6E-27 1.2E-31 160.9 8.7 148 8-157 2-164 (198)
116 KOG4252 GTP-binding protein [S 99.9 2E-28 4.4E-33 163.3 1.3 153 6-159 16-168 (246)
117 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.8E-25 4E-30 153.7 15.9 142 9-157 14-161 (174)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.9 2.9E-25 6.2E-30 150.4 14.7 141 12-158 1-148 (160)
119 cd00878 Arf_Arl Arf (ADP-ribos 99.9 4.7E-25 1E-29 149.2 13.7 139 12-157 1-145 (158)
120 cd04151 Arl1 Arl1 subfamily. 99.9 3.1E-25 6.7E-30 150.2 12.4 139 12-157 1-145 (158)
121 smart00178 SAR Sar1p-like memb 99.9 1.6E-24 3.5E-29 150.3 15.4 129 7-142 14-143 (184)
122 cd00879 Sar1 Sar1 subfamily. 99.9 1.9E-24 4.2E-29 150.4 15.8 130 7-143 16-146 (190)
123 KOG0070 GTP-binding ADP-ribosy 99.9 2.4E-25 5.1E-30 149.6 10.2 148 7-159 14-165 (181)
124 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2E-24 4.3E-29 147.2 14.9 140 12-157 1-154 (167)
125 PF00025 Arf: ADP-ribosylation 99.9 2.5E-24 5.4E-29 148.2 14.7 145 6-157 10-161 (175)
126 PF08477 Miro: Miro-like prote 99.9 3.3E-24 7.1E-29 138.6 13.6 114 12-126 1-119 (119)
127 PTZ00099 rab6; Provisional 99.9 4E-24 8.6E-29 147.3 14.5 126 33-158 3-128 (176)
128 KOG0073 GTP-binding ADP-ribosy 99.9 4E-24 8.6E-29 140.7 13.5 147 6-157 12-163 (185)
129 cd04159 Arl10_like Arl10-like 99.9 1.3E-23 2.9E-28 141.3 14.9 141 13-157 2-146 (159)
130 COG1100 GTPase SAR1 and relate 99.9 1.6E-23 3.5E-28 148.7 16.1 122 10-131 5-127 (219)
131 TIGR00231 small_GTP small GTP- 99.9 2E-22 4.3E-27 135.1 16.5 147 10-157 1-149 (161)
132 cd04155 Arl3 Arl3 subfamily. 99.9 6.5E-23 1.4E-27 140.6 13.0 122 5-131 9-131 (173)
133 cd01890 LepA LepA subfamily. 99.9 1.5E-22 3.3E-27 139.5 12.6 114 12-129 2-133 (179)
134 cd01898 Obg Obg subfamily. Th 99.9 2.5E-22 5.5E-27 137.1 13.1 144 12-157 2-156 (170)
135 cd01897 NOG NOG1 is a nucleola 99.9 3.5E-22 7.6E-27 136.3 13.6 142 12-158 2-154 (168)
136 cd01878 HflX HflX subfamily. 99.9 3.8E-22 8.2E-27 140.4 13.2 144 8-158 39-191 (204)
137 cd01891 TypA_BipA TypA (tyrosi 99.9 2.3E-22 5E-27 140.6 12.0 143 11-157 3-167 (194)
138 cd04171 SelB SelB subfamily. 99.9 1E-21 2.3E-26 133.1 13.1 139 12-157 2-151 (164)
139 KOG3883 Ras family small GTPas 99.9 2.2E-21 4.8E-26 126.5 13.2 147 9-155 8-158 (198)
140 PRK12299 obgE GTPase CgtA; Rev 99.9 1.7E-21 3.7E-26 145.9 13.8 147 10-157 158-313 (335)
141 KOG0074 GTP-binding ADP-ribosy 99.9 1E-21 2.2E-26 126.6 10.6 146 8-157 15-164 (185)
142 cd00882 Ras_like_GTPase Ras-li 99.9 6.5E-21 1.4E-25 126.5 14.9 142 15-157 1-145 (157)
143 KOG0071 GTP-binding ADP-ribosy 99.9 2.9E-21 6.2E-26 124.3 11.8 139 8-153 15-159 (180)
144 TIGR02528 EutP ethanolamine ut 99.9 3.7E-22 8.1E-27 132.8 7.9 123 12-157 2-130 (142)
145 cd04105 SR_beta Signal recogni 99.9 3.9E-21 8.5E-26 135.3 12.7 119 12-131 2-125 (203)
146 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 5.3E-21 1.2E-25 130.3 13.0 115 12-130 2-117 (168)
147 KOG0075 GTP-binding ADP-ribosy 99.9 1.5E-22 3.2E-27 131.1 4.9 142 9-156 19-166 (186)
148 KOG1673 Ras GTPases [General f 99.9 1.8E-21 3.9E-26 127.3 8.8 151 8-159 18-173 (205)
149 cd01879 FeoB Ferrous iron tran 99.9 1.4E-20 3E-25 127.0 12.2 135 15-158 1-143 (158)
150 TIGR03156 GTP_HflX GTP-binding 99.9 1.9E-20 4.1E-25 141.2 13.4 120 9-130 188-316 (351)
151 cd01881 Obg_like The Obg-like 99.8 1.8E-20 3.9E-25 128.5 11.9 142 15-157 1-162 (176)
152 TIGR00450 mnmE_trmE_thdF tRNA 99.8 6.1E-20 1.3E-24 142.1 15.1 116 8-130 201-325 (442)
153 PRK04213 GTP-binding protein; 99.8 7E-21 1.5E-25 133.7 7.6 116 8-131 7-146 (201)
154 PRK03003 GTP-binding protein D 99.8 6.5E-20 1.4E-24 143.6 12.7 144 9-159 210-368 (472)
155 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 5.7E-20 1.2E-24 123.9 10.5 128 1-129 1-128 (216)
156 TIGR02729 Obg_CgtA Obg family 99.8 1.2E-19 2.6E-24 135.8 13.2 146 10-157 157-314 (329)
157 TIGR03598 GTPase_YsxC ribosome 99.8 1.3E-19 2.9E-24 125.1 12.5 146 6-158 14-176 (179)
158 PRK05291 trmE tRNA modificatio 99.8 1.3E-19 2.9E-24 140.8 13.3 115 9-131 214-337 (449)
159 cd04164 trmE TrmE (MnmE, ThdF, 99.8 5.8E-19 1.3E-23 118.6 14.0 132 11-157 2-142 (157)
160 PRK15494 era GTPase Era; Provi 99.8 1.6E-19 3.4E-24 135.9 12.2 138 8-157 50-201 (339)
161 TIGR00436 era GTP-binding prot 99.8 2.6E-19 5.6E-24 131.2 12.5 112 12-130 2-122 (270)
162 PRK03003 GTP-binding protein D 99.8 4.1E-19 8.8E-24 139.1 14.2 115 9-129 37-160 (472)
163 TIGR00487 IF-2 translation ini 99.8 5.3E-19 1.1E-23 140.8 14.1 117 8-129 85-201 (587)
164 PRK11058 GTPase HflX; Provisio 99.8 4.1E-19 8.8E-24 136.9 13.0 118 11-129 198-323 (426)
165 TIGR01393 lepA GTP-binding pro 99.8 5.6E-19 1.2E-23 141.1 14.0 117 10-130 3-137 (595)
166 cd00881 GTP_translation_factor 99.8 8.7E-19 1.9E-23 121.3 12.8 112 12-129 1-128 (189)
167 PF02421 FeoB_N: Ferrous iron 99.8 1.8E-19 3.8E-24 120.8 7.8 137 11-158 1-147 (156)
168 cd01889 SelB_euk SelB subfamil 99.8 9.3E-19 2E-23 122.2 11.5 144 11-158 1-172 (192)
169 KOG0077 Vesicle coat complex C 99.8 2.7E-19 5.8E-24 118.3 8.2 126 7-139 17-143 (193)
170 KOG4423 GTP-binding protein-li 99.8 5.4E-22 1.2E-26 133.3 -5.2 154 5-158 20-179 (229)
171 PRK12297 obgE GTPase CgtA; Rev 99.8 4E-18 8.7E-23 130.9 15.0 141 11-158 159-313 (424)
172 cd01894 EngA1 EngA1 subfamily. 99.8 1.6E-18 3.5E-23 116.5 11.0 113 14-132 1-122 (157)
173 PRK05306 infB translation init 99.8 2.5E-18 5.3E-23 140.2 13.9 118 7-130 287-404 (787)
174 PRK12296 obgE GTPase CgtA; Rev 99.8 2.4E-18 5.3E-23 133.9 12.6 145 10-157 159-325 (500)
175 cd01895 EngA2 EngA2 subfamily. 99.8 6.5E-18 1.4E-22 115.1 13.1 116 10-131 2-129 (174)
176 cd04163 Era Era subfamily. Er 99.8 4.7E-18 1E-22 114.9 11.9 114 10-129 3-125 (168)
177 CHL00189 infB translation init 99.8 4.2E-18 9E-23 137.8 13.2 116 8-130 242-362 (742)
178 TIGR00475 selB selenocysteine- 99.8 4E-18 8.7E-23 136.1 12.8 139 11-158 1-152 (581)
179 TIGR03594 GTPase_EngA ribosome 99.8 1E-17 2.2E-22 130.0 14.5 115 8-128 170-296 (429)
180 PRK15467 ethanolamine utilizat 99.8 1.6E-18 3.5E-23 117.5 8.8 124 12-158 3-133 (158)
181 PRK00454 engB GTP-binding prot 99.8 7.1E-18 1.5E-22 117.8 12.3 143 8-157 22-179 (196)
182 PRK00093 GTP-binding protein D 99.8 1.3E-17 2.9E-22 129.6 14.4 111 11-129 2-123 (435)
183 PRK00089 era GTPase Era; Revie 99.8 7.8E-18 1.7E-22 124.6 11.9 116 9-129 4-127 (292)
184 COG2229 Predicted GTPase [Gene 99.8 2.8E-17 6E-22 110.7 12.8 143 4-154 4-160 (187)
185 TIGR00483 EF-1_alpha translati 99.8 7.4E-18 1.6E-22 130.6 11.5 149 6-158 3-193 (426)
186 COG1159 Era GTPase [General fu 99.8 8.2E-18 1.8E-22 121.4 10.3 120 8-132 4-131 (298)
187 PRK09518 bifunctional cytidyla 99.7 1.6E-17 3.5E-22 135.7 12.5 116 9-130 449-576 (712)
188 PRK10218 GTP-binding protein; 99.7 7.4E-17 1.6E-21 128.8 15.9 146 9-158 4-171 (607)
189 cd00880 Era_like Era (E. coli 99.7 3.2E-17 7E-22 109.7 11.7 139 15-158 1-150 (163)
190 TIGR03594 GTPase_EngA ribosome 99.7 4.5E-17 9.9E-22 126.4 13.9 136 12-158 1-146 (429)
191 KOG0076 GTP-binding ADP-ribosy 99.7 3.4E-18 7.3E-23 113.9 6.4 147 7-157 14-172 (197)
192 TIGR00437 feoB ferrous iron tr 99.7 2.4E-17 5.3E-22 131.8 12.6 133 17-158 1-141 (591)
193 PRK12298 obgE GTPase CgtA; Rev 99.7 3.7E-17 8.1E-22 124.8 12.7 120 11-131 160-291 (390)
194 cd04168 TetM_like Tet(M)-like 99.7 2.3E-17 4.9E-22 118.6 10.7 129 12-144 1-146 (237)
195 PRK05433 GTP-binding protein L 99.7 5.4E-17 1.2E-21 130.0 13.8 119 8-130 5-141 (600)
196 PRK09554 feoB ferrous iron tra 99.7 9.5E-17 2.1E-21 131.3 15.4 140 10-158 3-154 (772)
197 PRK12317 elongation factor 1-a 99.7 2.6E-17 5.6E-22 127.6 10.9 119 7-129 3-153 (425)
198 cd01888 eIF2_gamma eIF2-gamma 99.7 3.9E-17 8.4E-22 115.0 10.9 146 11-158 1-185 (203)
199 PRK09518 bifunctional cytidyla 99.7 1.6E-16 3.6E-21 129.8 15.5 115 8-129 273-397 (712)
200 cd04167 Snu114p Snu114p subfam 99.7 5.4E-17 1.2E-21 115.1 11.0 113 12-128 2-136 (213)
201 cd04169 RF3 RF3 subfamily. Pe 99.7 1E-16 2.2E-21 117.0 12.6 118 10-131 2-139 (267)
202 cd01850 CDC_Septin CDC/Septin. 99.7 7.7E-17 1.7E-21 118.2 12.0 140 9-153 3-183 (276)
203 cd01885 EF2 EF2 (for archaea a 99.7 6.7E-17 1.4E-21 114.9 11.1 113 12-128 2-138 (222)
204 PRK00093 GTP-binding protein D 99.7 1.4E-16 3.1E-21 123.9 13.4 116 8-129 171-298 (435)
205 TIGR01394 TypA_BipA GTP-bindin 99.7 9.3E-17 2E-21 128.3 12.3 143 11-157 2-166 (594)
206 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.7E-16 3.7E-21 112.1 11.6 113 12-129 1-144 (208)
207 KOG0072 GTP-binding ADP-ribosy 99.7 1.8E-17 3.9E-22 107.3 5.0 146 8-158 16-165 (182)
208 PF00009 GTP_EFTU: Elongation 99.7 6.5E-17 1.4E-21 112.5 8.2 117 9-129 2-136 (188)
209 KOG1707 Predicted Ras related/ 99.7 6.2E-17 1.4E-21 125.2 8.6 125 6-132 5-132 (625)
210 cd01896 DRG The developmentall 99.7 2.1E-15 4.5E-20 108.3 15.9 83 12-96 2-91 (233)
211 cd01884 EF_Tu EF-Tu subfamily. 99.7 4.5E-16 9.8E-21 108.8 11.7 146 10-159 2-170 (195)
212 TIGR00491 aIF-2 translation in 99.7 2.8E-16 6E-21 125.2 11.7 113 10-129 4-135 (590)
213 PF09439 SRPRB: Signal recogni 99.7 1.3E-16 2.9E-21 109.2 7.0 119 10-131 3-128 (181)
214 cd01886 EF-G Elongation factor 99.7 1.7E-15 3.6E-20 110.8 13.1 133 12-150 1-152 (270)
215 cd01876 YihA_EngB The YihA (En 99.7 7.9E-16 1.7E-20 104.3 10.6 109 12-129 1-124 (170)
216 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 1.2E-15 2.5E-20 108.7 11.7 116 12-129 1-125 (232)
217 PRK04004 translation initiatio 99.7 1.3E-15 2.8E-20 121.7 13.2 114 8-128 4-136 (586)
218 cd01883 EF1_alpha Eukaryotic e 99.7 1.1E-15 2.4E-20 108.8 11.5 114 12-129 1-151 (219)
219 TIGR03680 eif2g_arch translati 99.7 4.9E-16 1.1E-20 119.7 10.3 149 8-158 2-182 (406)
220 COG1160 Predicted GTPases [Gen 99.7 8.4E-16 1.8E-20 116.7 10.7 111 11-128 4-125 (444)
221 COG0486 ThdF Predicted GTPase 99.7 3.3E-15 7.2E-20 113.8 13.9 117 9-132 216-341 (454)
222 TIGR00503 prfC peptide chain r 99.7 2.5E-15 5.4E-20 118.8 12.8 122 5-130 6-147 (527)
223 COG1160 Predicted GTPases [Gen 99.6 3.9E-15 8.5E-20 113.1 13.0 144 9-158 177-336 (444)
224 PF01926 MMR_HSR1: 50S ribosom 99.6 1.2E-14 2.5E-19 93.5 12.9 106 12-124 1-116 (116)
225 cd04170 EF-G_bact Elongation f 99.6 2.1E-15 4.6E-20 110.4 10.6 113 12-130 1-131 (268)
226 TIGR00485 EF-Tu translation el 99.6 3.3E-15 7.2E-20 114.8 12.1 147 5-157 7-178 (394)
227 PRK00741 prfC peptide chain re 99.6 2.3E-15 5E-20 118.9 11.1 122 6-131 6-147 (526)
228 COG0218 Predicted GTPase [Gene 99.6 9.2E-15 2E-19 100.5 12.6 118 8-133 22-153 (200)
229 PRK04000 translation initiatio 99.6 3E-15 6.6E-20 115.4 11.3 148 5-158 4-187 (411)
230 PRK12735 elongation factor Tu; 99.6 6.9E-15 1.5E-19 113.1 11.9 146 6-157 8-178 (396)
231 PRK10512 selenocysteinyl-tRNA- 99.6 1.2E-14 2.7E-19 116.7 13.5 139 12-157 2-151 (614)
232 TIGR00484 EF-G translation elo 99.6 2E-14 4.2E-19 117.4 14.8 119 7-131 7-143 (689)
233 CHL00071 tufA elongation facto 99.6 1.2E-14 2.7E-19 112.1 12.9 146 6-157 8-178 (409)
234 cd04104 p47_IIGP_like p47 (47- 99.6 4.9E-15 1.1E-19 103.9 9.8 111 10-128 1-120 (197)
235 PRK12736 elongation factor Tu; 99.6 8.8E-15 1.9E-19 112.4 12.0 146 6-157 8-178 (394)
236 PLN03126 Elongation factor Tu; 99.6 1E-14 2.2E-19 114.1 11.8 119 5-129 76-211 (478)
237 PRK13351 elongation factor G; 99.6 7E-15 1.5E-19 120.1 11.0 117 8-130 6-140 (687)
238 COG1084 Predicted GTPase [Gene 99.6 1.8E-14 3.8E-19 105.4 11.2 125 9-137 167-302 (346)
239 COG0370 FeoB Fe2+ transport sy 99.6 6.6E-14 1.4E-18 110.9 12.5 142 9-159 2-151 (653)
240 PLN00043 elongation factor 1-a 99.5 1.3E-13 2.9E-18 107.3 12.9 147 6-158 3-199 (447)
241 TIGR00490 aEF-2 translation el 99.5 3.7E-14 8.1E-19 116.1 10.3 120 6-129 15-152 (720)
242 smart00010 small_GTPase Small 99.5 8.5E-14 1.8E-18 90.0 10.0 102 11-141 1-103 (124)
243 PRK05124 cysN sulfate adenylyl 99.5 1.5E-13 3.3E-18 107.7 12.5 120 7-131 24-176 (474)
244 cd04165 GTPBP1_like GTPBP1-lik 99.5 1E-13 2.2E-18 98.9 10.3 115 12-130 1-153 (224)
245 PRK00049 elongation factor Tu; 99.5 2.5E-13 5.3E-18 104.5 13.1 118 6-129 8-142 (396)
246 KOG1423 Ras-like GTPase ERA [C 99.5 4.4E-14 9.6E-19 102.4 8.4 120 6-129 68-199 (379)
247 PF10662 PduV-EutP: Ethanolami 99.5 6.8E-14 1.5E-18 92.1 7.6 126 11-158 2-131 (143)
248 TIGR02034 CysN sulfate adenyly 99.5 2.3E-13 4.9E-18 105.0 11.0 115 11-130 1-148 (406)
249 PRK05506 bifunctional sulfate 99.5 2.1E-13 4.4E-18 110.6 11.2 119 6-129 20-171 (632)
250 PTZ00141 elongation factor 1- 99.5 6.1E-13 1.3E-17 103.6 12.9 117 6-127 3-157 (446)
251 KOG1191 Mitochondrial GTPase [ 99.5 1.7E-13 3.7E-18 104.8 9.2 152 8-162 266-439 (531)
252 COG2262 HflX GTPases [General 99.5 1.8E-12 4E-17 97.5 13.7 123 8-131 190-320 (411)
253 PRK12739 elongation factor G; 99.5 7.9E-13 1.7E-17 108.1 12.8 117 8-130 6-140 (691)
254 PLN03127 Elongation factor Tu; 99.5 7.1E-13 1.5E-17 103.2 11.9 117 7-129 58-191 (447)
255 COG0532 InfB Translation initi 99.5 3.2E-13 7E-18 104.3 9.7 135 9-147 4-141 (509)
256 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 4.2E-13 9.1E-18 94.0 9.5 116 11-130 1-131 (196)
257 PRK00007 elongation factor G; 99.5 8.5E-13 1.8E-17 107.9 12.3 119 7-131 7-143 (693)
258 KOG1489 Predicted GTP-binding 99.5 6.8E-13 1.5E-17 96.7 10.2 147 10-159 196-354 (366)
259 KOG1145 Mitochondrial translat 99.5 3.2E-13 6.9E-18 104.5 9.0 118 8-130 151-268 (683)
260 cd01899 Ygr210 Ygr210 subfamil 99.5 1.7E-12 3.8E-17 96.8 11.9 81 13-93 1-110 (318)
261 TIGR00991 3a0901s02IAP34 GTP-b 99.4 3.3E-12 7.3E-17 94.1 12.9 125 7-134 35-172 (313)
262 cd01853 Toc34_like Toc34-like 99.4 3.1E-12 6.7E-17 92.5 12.3 123 6-131 27-165 (249)
263 cd00066 G-alpha G protein alph 99.4 2.1E-12 4.5E-17 96.7 10.7 73 56-128 158-241 (317)
264 COG3596 Predicted GTPase [Gene 99.4 5.1E-13 1.1E-17 95.8 6.6 119 7-129 36-162 (296)
265 smart00275 G_alpha G protein a 99.4 5.5E-12 1.2E-16 95.2 11.4 72 57-128 182-264 (342)
266 COG4108 PrfC Peptide chain rel 99.4 1.8E-12 3.8E-17 98.1 8.4 142 6-151 8-174 (528)
267 PLN00116 translation elongatio 99.4 2.4E-12 5.2E-17 107.1 9.9 120 5-128 14-163 (843)
268 PTZ00327 eukaryotic translatio 99.4 3.9E-12 8.5E-17 99.1 10.1 151 6-158 30-219 (460)
269 KOG0090 Signal recognition par 99.4 2.2E-12 4.7E-17 89.2 7.7 115 11-130 39-160 (238)
270 COG0536 Obg Predicted GTPase [ 99.4 4.7E-12 1E-16 93.3 9.5 142 12-156 161-317 (369)
271 PTZ00416 elongation factor 2; 99.4 4.6E-12 9.9E-17 105.3 10.2 118 7-128 16-157 (836)
272 COG5256 TEF1 Translation elong 99.4 1.5E-11 3.1E-16 92.7 11.9 152 6-159 3-198 (428)
273 PRK12740 elongation factor G; 99.4 9.4E-12 2E-16 101.6 11.5 109 16-130 1-127 (668)
274 KOG1707 Predicted Ras related/ 99.3 3.6E-11 7.7E-16 93.8 11.6 145 8-156 423-567 (625)
275 PRK07560 elongation factor EF- 99.3 9.6E-12 2.1E-16 102.3 8.4 120 5-128 15-152 (731)
276 KOG0462 Elongation factor-type 99.3 4.1E-11 8.9E-16 93.0 10.9 147 8-159 58-222 (650)
277 COG0480 FusA Translation elong 99.3 8.9E-11 1.9E-15 95.2 11.5 122 6-132 6-145 (697)
278 COG0481 LepA Membrane GTPase L 99.2 1.3E-10 2.9E-15 89.0 11.5 122 7-132 6-145 (603)
279 PF05049 IIGP: Interferon-indu 99.2 1.6E-11 3.5E-16 92.7 6.6 110 8-127 33-153 (376)
280 PF04548 AIG1: AIG1 family; I 99.2 3.9E-11 8.5E-16 85.0 8.2 118 11-132 1-133 (212)
281 PF00735 Septin: Septin; Inte 99.2 9.9E-11 2.2E-15 86.1 9.5 118 9-130 3-157 (281)
282 KOG1490 GTP-binding protein CR 99.2 5E-11 1.1E-15 91.7 7.5 150 7-159 165-328 (620)
283 COG1163 DRG Predicted GTPase [ 99.2 2.5E-10 5.4E-15 83.8 10.0 88 8-97 61-155 (365)
284 PRK09602 translation-associate 99.2 5.4E-10 1.2E-14 85.9 11.8 83 11-93 2-113 (396)
285 KOG3886 GTP-binding protein [S 99.2 1E-10 2.2E-15 82.1 6.9 120 9-130 3-131 (295)
286 COG1217 TypA Predicted membran 99.2 3.3E-10 7.1E-15 86.7 9.6 142 10-155 5-168 (603)
287 PF00350 Dynamin_N: Dynamin fa 99.2 1.6E-10 3.4E-15 78.8 7.3 63 60-125 102-168 (168)
288 cd01882 BMS1 Bms1. Bms1 is an 99.1 8.7E-10 1.9E-14 78.9 11.0 111 7-129 36-147 (225)
289 KOG0468 U5 snRNP-specific prot 99.1 7.7E-10 1.7E-14 87.8 10.4 120 4-127 122-261 (971)
290 TIGR00993 3a0901s04IAP86 chlor 99.1 3.8E-09 8.2E-14 84.6 14.1 120 8-129 116-250 (763)
291 KOG3905 Dynein light intermedi 99.1 1.1E-09 2.4E-14 80.5 10.1 149 8-159 50-277 (473)
292 smart00053 DYNc Dynamin, GTPas 99.1 1.8E-09 4E-14 77.6 11.0 69 59-130 125-207 (240)
293 PRK14845 translation initiatio 99.1 6.9E-10 1.5E-14 93.4 10.0 102 21-129 472-592 (1049)
294 PF05783 DLIC: Dynein light in 99.1 2.5E-09 5.3E-14 83.6 12.2 96 8-106 23-125 (472)
295 TIGR00157 ribosome small subun 99.1 3.4E-10 7.4E-15 81.9 6.6 84 70-157 24-108 (245)
296 PRK09866 hypothetical protein; 99.1 2.1E-09 4.6E-14 85.8 11.1 69 59-129 230-303 (741)
297 KOG0082 G-protein alpha subuni 99.1 1.2E-09 2.7E-14 81.7 8.7 79 51-129 187-276 (354)
298 KOG0705 GTPase-activating prot 99.0 2.8E-10 6.1E-15 88.4 4.2 145 8-159 28-175 (749)
299 KOG3887 Predicted small GTPase 99.0 2E-09 4.3E-14 76.3 7.1 114 11-128 28-148 (347)
300 TIGR02836 spore_IV_A stage IV 99.0 2.1E-08 4.5E-13 76.6 12.8 116 9-127 16-192 (492)
301 PTZ00258 GTP-binding protein; 99.0 6.9E-09 1.5E-13 79.3 10.2 86 8-93 19-126 (390)
302 COG5019 CDC3 Septin family pro 99.0 8.4E-09 1.8E-13 77.0 9.9 117 8-129 21-176 (373)
303 COG2895 CysN GTPases - Sulfate 98.9 1E-08 2.2E-13 76.2 10.0 128 7-139 3-163 (431)
304 cd01900 YchF YchF subfamily. 98.9 2.8E-09 6.2E-14 78.0 6.8 81 13-93 1-103 (274)
305 PRK09601 GTP-binding protein Y 98.9 5.5E-09 1.2E-13 79.1 8.6 83 11-93 3-107 (364)
306 KOG0458 Elongation factor 1 al 98.9 4E-08 8.8E-13 77.1 12.6 132 6-140 173-340 (603)
307 PRK13768 GTPase; Provisional 98.9 1.5E-08 3.2E-13 73.7 8.8 72 60-132 98-179 (253)
308 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 6.3E-09 1.4E-13 69.1 6.2 54 12-69 85-138 (141)
309 KOG4273 Uncharacterized conser 98.9 9.8E-09 2.1E-13 73.3 7.2 131 11-143 5-137 (418)
310 KOG2655 Septin family protein 98.9 2.9E-08 6.3E-13 74.6 9.9 141 9-154 20-199 (366)
311 KOG1532 GTPase XAB1, interacts 98.9 2.2E-08 4.8E-13 72.3 8.9 125 4-130 13-196 (366)
312 COG4917 EutP Ethanolamine util 98.9 2.6E-09 5.6E-14 68.1 3.5 123 12-156 3-130 (148)
313 cd04178 Nucleostemin_like Nucl 98.9 1.1E-08 2.5E-13 70.1 7.0 57 8-68 115-171 (172)
314 cd01858 NGP_1 NGP-1. Autoanti 98.8 1.9E-08 4.1E-13 68.0 7.0 56 9-68 101-156 (157)
315 cd01856 YlqF YlqF. Proteins o 98.8 2.4E-08 5.3E-13 68.4 7.1 58 8-69 113-170 (171)
316 KOG1547 Septin CDC10 and relat 98.8 4.5E-08 9.8E-13 69.4 8.2 115 9-128 45-197 (336)
317 cd01859 MJ1464 MJ1464. This f 98.8 3.4E-08 7.3E-13 66.6 7.2 57 9-69 100-156 (156)
318 KOG1486 GTP-binding protein DR 98.8 1.6E-07 3.5E-12 67.2 10.6 90 8-99 60-156 (364)
319 PF03029 ATP_bind_1: Conserved 98.8 1.5E-08 3.3E-13 72.9 5.6 68 60-129 92-170 (238)
320 KOG0461 Selenocysteine-specifi 98.8 9.7E-08 2.1E-12 71.1 9.6 119 6-129 3-136 (522)
321 COG0050 TufB GTPases - transla 98.7 2.2E-08 4.9E-13 72.9 5.9 147 6-156 8-177 (394)
322 KOG1144 Translation initiation 98.7 3.5E-08 7.5E-13 79.5 7.0 116 9-128 474-605 (1064)
323 TIGR03596 GTPase_YlqF ribosome 98.7 5.5E-08 1.2E-12 71.6 7.4 58 8-69 116-173 (276)
324 PRK09563 rbgA GTPase YlqF; Rev 98.7 7.2E-08 1.6E-12 71.4 8.0 59 8-70 119-177 (287)
325 COG1161 Predicted GTPases [Gen 98.7 4.7E-08 1E-12 73.4 6.4 59 7-69 129-187 (322)
326 TIGR00073 hypB hydrogenase acc 98.7 7.1E-08 1.5E-12 68.1 6.9 25 9-33 21-45 (207)
327 cd01855 YqeH YqeH. YqeH is an 98.7 6E-08 1.3E-12 67.5 6.1 56 10-68 127-189 (190)
328 PRK09435 membrane ATPase/prote 98.7 2.6E-07 5.7E-12 69.5 9.5 62 58-130 148-209 (332)
329 TIGR00101 ureG urease accessor 98.7 2.5E-07 5.3E-12 65.0 8.9 24 10-33 1-24 (199)
330 COG5257 GCD11 Translation init 98.6 1E-07 2.2E-12 70.3 6.8 153 1-158 1-188 (415)
331 KOG1954 Endocytosis/signaling 98.6 2.8E-07 6E-12 69.3 8.6 120 10-132 58-228 (532)
332 COG5192 BMS1 GTP-binding prote 98.6 1.8E-07 3.9E-12 73.8 7.4 133 3-147 62-194 (1077)
333 cd01849 YlqF_related_GTPase Yl 98.5 3.9E-07 8.4E-12 61.4 6.7 57 8-69 98-155 (155)
334 KOG2486 Predicted GTPase [Gene 98.5 2E-07 4.4E-12 67.4 5.4 116 6-129 132-262 (320)
335 KOG0460 Mitochondrial translat 98.5 7.9E-07 1.7E-11 66.2 7.6 146 6-154 50-217 (449)
336 cd01851 GBP Guanylate-binding 98.5 5.3E-06 1.1E-10 59.4 11.7 86 8-94 5-103 (224)
337 PF03193 DUF258: Protein of un 98.5 1.8E-07 4E-12 63.1 3.9 60 11-73 36-101 (161)
338 KOG0467 Translation elongation 98.4 9.3E-07 2E-11 71.6 7.9 118 6-127 5-136 (887)
339 KOG0099 G protein subunit Galp 98.4 8E-07 1.7E-11 64.0 6.5 75 54-128 197-282 (379)
340 TIGR00092 GTP-binding protein 98.4 1.5E-06 3.2E-11 66.1 7.8 83 11-93 3-108 (368)
341 KOG0464 Elongation factor G [T 98.4 1.7E-07 3.7E-12 71.4 2.6 117 9-129 36-168 (753)
342 PRK12288 GTPase RsgA; Reviewed 98.4 1E-06 2.2E-11 66.9 6.6 58 13-73 208-271 (347)
343 COG0012 Predicted GTPase, prob 98.4 2.6E-06 5.6E-11 64.3 8.3 84 10-93 2-108 (372)
344 TIGR03348 VI_IcmF type VI secr 98.4 2.1E-06 4.5E-11 74.4 8.9 111 13-128 114-256 (1169)
345 KOG0410 Predicted GTP binding 98.4 8.1E-07 1.8E-11 65.7 5.3 116 10-128 178-307 (410)
346 TIGR00750 lao LAO/AO transport 98.3 8.5E-06 1.8E-10 60.8 10.7 63 58-131 126-188 (300)
347 KOG1491 Predicted GTP-binding 98.3 4.6E-06 1E-10 62.1 8.1 86 8-93 18-125 (391)
348 TIGR03597 GTPase_YqeH ribosome 98.3 2E-06 4.3E-11 65.7 6.5 57 11-70 155-215 (360)
349 PRK12289 GTPase RsgA; Reviewed 98.3 1.8E-06 3.8E-11 65.6 6.2 82 71-157 78-160 (352)
350 TIGR00157 ribosome small subun 98.3 2.2E-06 4.8E-11 62.1 6.0 59 11-73 121-185 (245)
351 PRK12289 GTPase RsgA; Reviewed 98.3 1.9E-06 4.1E-11 65.5 5.7 57 13-72 175-237 (352)
352 COG1162 Predicted GTPases [Gen 98.3 1.8E-06 3.9E-11 63.6 5.4 59 12-73 166-230 (301)
353 cd01854 YjeQ_engC YjeQ/EngC. 98.3 1.9E-06 4.1E-11 63.9 5.3 76 78-158 74-150 (287)
354 PRK13796 GTPase YqeH; Provisio 98.2 2.3E-06 5.1E-11 65.4 5.5 57 10-69 160-220 (365)
355 PRK00098 GTPase RsgA; Reviewed 98.2 2.1E-06 4.6E-11 64.0 4.9 75 80-158 78-153 (298)
356 KOG0448 Mitofusin 1 GTPase, in 98.2 2.4E-05 5.1E-10 63.0 10.8 118 8-129 107-275 (749)
357 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 3.6E-06 7.7E-11 55.8 5.1 75 78-158 7-83 (141)
358 cd03112 CobW_like The function 98.2 1.4E-05 3E-10 54.1 7.8 21 13-33 3-23 (158)
359 KOG1424 Predicted GTP-binding 98.1 5.1E-06 1.1E-10 64.8 5.0 56 10-69 314-369 (562)
360 KOG0447 Dynamin-like GTP bindi 98.1 6.6E-05 1.4E-09 59.5 10.8 81 59-142 412-506 (980)
361 COG3276 SelB Selenocysteine-sp 98.1 2.7E-05 5.9E-10 59.8 8.3 115 12-131 2-119 (447)
362 KOG0085 G protein subunit Galp 98.1 1.2E-06 2.7E-11 62.0 0.9 73 57-129 197-280 (359)
363 cd01855 YqeH YqeH. YqeH is an 98.1 9E-06 1.9E-10 56.6 5.1 53 72-130 24-76 (190)
364 cd01854 YjeQ_engC YjeQ/EngC. 98.1 1.3E-05 2.7E-10 59.5 6.1 60 11-73 162-227 (287)
365 PRK00098 GTPase RsgA; Reviewed 98.0 1.3E-05 2.8E-10 59.8 6.1 58 11-71 165-228 (298)
366 PF00503 G-alpha: G-protein al 98.0 4.6E-05 9.9E-10 58.9 9.2 72 57-128 234-316 (389)
367 cd01859 MJ1464 MJ1464. This f 98.0 7.4E-06 1.6E-10 55.1 3.4 78 74-157 4-81 (156)
368 PRK12288 GTPase RsgA; Reviewed 98.0 2E-05 4.3E-10 59.9 6.0 74 81-157 119-193 (347)
369 cd03111 CpaE_like This protein 97.9 0.00012 2.7E-09 46.1 8.3 103 13-124 2-106 (106)
370 KOG2484 GTPase [General functi 97.9 1.3E-05 2.8E-10 60.8 4.0 59 7-69 249-307 (435)
371 COG1618 Predicted nucleotide k 97.9 0.00045 9.8E-09 46.5 10.7 114 8-127 3-142 (179)
372 KOG0465 Mitochondrial elongati 97.9 1.7E-05 3.7E-10 63.1 4.6 123 9-135 38-176 (721)
373 TIGR01425 SRP54_euk signal rec 97.9 0.00017 3.8E-09 56.1 10.0 114 9-128 99-252 (429)
374 KOG1143 Predicted translation 97.9 4.6E-05 9.9E-10 57.8 6.2 118 9-130 166-318 (591)
375 PF09547 Spore_IV_A: Stage IV 97.8 0.00048 1E-08 53.2 11.4 115 10-127 17-192 (492)
376 TIGR03597 GTPase_YqeH ribosome 97.8 2.7E-05 5.8E-10 59.6 4.4 82 69-157 50-138 (360)
377 cd01858 NGP_1 NGP-1. Autoanti 97.8 5.8E-05 1.3E-09 50.9 5.0 51 78-130 4-54 (157)
378 cd03115 SRP The signal recogni 97.7 0.00036 7.7E-09 47.7 8.7 66 58-129 82-153 (173)
379 PRK10416 signal recognition pa 97.7 0.00031 6.8E-09 52.9 8.9 24 9-32 113-136 (318)
380 PRK14722 flhF flagellar biosyn 97.7 0.00018 3.8E-09 55.2 7.4 23 10-32 137-159 (374)
381 TIGR00064 ftsY signal recognit 97.7 0.00063 1.4E-08 50.1 9.9 86 58-154 154-252 (272)
382 cd02042 ParA ParA and ParB of 97.7 0.00057 1.2E-08 42.6 8.3 82 13-106 2-84 (104)
383 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00022 4.8E-09 39.4 5.5 43 83-126 14-58 (58)
384 COG0523 Putative GTPases (G3E 97.7 0.0012 2.6E-08 49.8 11.0 23 13-35 4-26 (323)
385 COG3523 IcmF Type VI protein s 97.6 0.00016 3.6E-09 62.2 6.3 115 13-129 128-270 (1188)
386 KOG0463 GTP-binding protein GP 97.6 0.0002 4.4E-09 54.5 6.1 119 9-131 132-289 (641)
387 KOG0469 Elongation factor 2 [T 97.6 0.00017 3.6E-09 56.8 5.8 119 5-127 14-162 (842)
388 KOG2485 Conserved ATP/GTP bind 97.6 9.6E-05 2.1E-09 54.6 4.1 61 8-69 141-206 (335)
389 cd03222 ABC_RNaseL_inhibitor T 97.6 0.0013 2.7E-08 45.5 9.3 103 11-126 26-133 (177)
390 cd00009 AAA The AAA+ (ATPases 97.5 0.001 2.2E-08 43.3 8.5 25 10-34 19-43 (151)
391 PRK12727 flagellar biosynthesi 97.5 0.0015 3.1E-08 52.3 10.5 135 10-154 350-519 (559)
392 KOG1487 GTP-binding protein DR 97.5 0.00045 9.7E-09 50.1 6.9 85 11-97 60-151 (358)
393 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.0017 3.6E-08 39.4 8.7 96 13-123 2-99 (99)
394 KOG3859 Septins (P-loop GTPase 97.5 0.00027 5.9E-09 51.7 5.6 60 9-68 41-104 (406)
395 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.0023 5E-08 42.5 9.6 23 12-34 28-50 (144)
396 cd02038 FleN-like FleN is a me 97.5 0.00057 1.2E-08 45.2 6.6 105 15-127 5-109 (139)
397 KOG2423 Nucleolar GTPase [Gene 97.4 0.00015 3.4E-09 55.3 3.5 84 7-97 304-389 (572)
398 COG5258 GTPBP1 GTPase [General 97.4 7.9E-05 1.7E-09 56.7 2.0 121 6-130 113-270 (527)
399 PF03266 NTPase_1: NTPase; In 97.4 0.00033 7.2E-09 47.9 4.8 52 12-66 1-52 (168)
400 cd01849 YlqF_related_GTPase Yl 97.3 0.0004 8.8E-09 46.7 4.6 44 84-130 1-44 (155)
401 PRK08118 topology modulation p 97.3 0.00023 4.9E-09 48.7 3.4 22 12-33 3-24 (167)
402 PRK13695 putative NTPase; Prov 97.3 0.0025 5.3E-08 43.7 8.5 21 12-32 2-22 (174)
403 COG1116 TauB ABC-type nitrate/ 97.3 0.00095 2.1E-08 48.0 6.4 22 13-34 32-53 (248)
404 PF13207 AAA_17: AAA domain; P 97.3 0.00026 5.6E-09 45.3 3.2 22 12-33 1-22 (121)
405 COG0563 Adk Adenylate kinase a 97.3 0.00026 5.6E-09 48.9 3.3 22 12-33 2-23 (178)
406 PF13521 AAA_28: AAA domain; P 97.3 0.00016 3.4E-09 49.0 2.2 22 12-33 1-22 (163)
407 PRK07261 topology modulation p 97.3 0.00028 6.1E-09 48.4 3.3 22 12-33 2-23 (171)
408 PF13671 AAA_33: AAA domain; P 97.3 0.00027 5.8E-09 46.6 2.9 21 13-33 2-22 (143)
409 COG1419 FlhF Flagellar GTP-bin 97.3 0.0019 4.2E-08 49.7 7.8 23 10-32 203-225 (407)
410 PF13555 AAA_29: P-loop contai 97.2 0.00039 8.5E-09 39.3 3.1 24 12-35 25-48 (62)
411 PRK00771 signal recognition pa 97.2 0.00073 1.6E-08 53.0 5.4 114 9-128 94-245 (437)
412 PRK11537 putative GTP-binding 97.2 0.0024 5.1E-08 48.2 7.8 21 13-33 7-27 (318)
413 COG1126 GlnQ ABC-type polar am 97.2 0.00052 1.1E-08 48.5 3.7 27 11-37 29-55 (240)
414 cd02019 NK Nucleoside/nucleoti 97.1 0.00062 1.3E-08 39.4 3.2 21 13-33 2-22 (69)
415 PF00005 ABC_tran: ABC transpo 97.1 0.00052 1.1E-08 44.9 2.9 23 11-33 12-34 (137)
416 COG0194 Gmk Guanylate kinase [ 97.1 0.00044 9.5E-09 47.7 2.5 25 10-34 4-28 (191)
417 PRK05703 flhF flagellar biosyn 97.0 0.0026 5.7E-08 49.8 6.9 89 58-156 299-394 (424)
418 PRK06217 hypothetical protein; 97.0 0.00073 1.6E-08 46.7 3.4 23 11-33 2-24 (183)
419 cd03110 Fer4_NifH_child This p 97.0 0.0044 9.4E-08 42.5 7.2 85 57-150 91-175 (179)
420 PRK14738 gmk guanylate kinase; 97.0 0.00084 1.8E-08 47.4 3.7 27 7-33 10-36 (206)
421 COG1136 SalX ABC-type antimicr 97.0 0.00064 1.4E-08 48.5 3.0 22 12-33 33-54 (226)
422 PRK14737 gmk guanylate kinase; 97.0 0.00066 1.4E-08 47.2 3.0 24 11-34 5-28 (186)
423 cd01856 YlqF YlqF. Proteins o 97.0 0.00054 1.2E-08 46.8 2.3 49 75-129 12-60 (171)
424 PF05621 TniB: Bacterial TniB 97.0 0.005 1.1E-07 45.8 7.3 106 6-125 57-190 (302)
425 smart00382 AAA ATPases associa 96.9 0.001 2.2E-08 42.9 3.4 26 11-36 3-28 (148)
426 PRK01889 GTPase RsgA; Reviewed 96.9 0.0033 7.1E-08 48.2 6.4 73 80-157 110-182 (356)
427 PF03205 MobB: Molybdopterin g 96.9 0.00091 2E-08 44.3 3.0 22 12-33 2-23 (140)
428 PRK01889 GTPase RsgA; Reviewed 96.9 0.0012 2.7E-08 50.4 4.1 25 11-35 196-220 (356)
429 PF00004 AAA: ATPase family as 96.9 0.0011 2.3E-08 42.9 3.2 21 13-33 1-21 (132)
430 PF04665 Pox_A32: Poxvirus A32 96.9 0.0011 2.3E-08 47.9 3.4 26 8-33 11-36 (241)
431 TIGR02322 phosphon_PhnN phosph 96.9 0.001 2.2E-08 45.7 3.2 22 12-33 3-24 (179)
432 PRK10078 ribose 1,5-bisphospho 96.9 0.0011 2.4E-08 46.0 3.3 22 12-33 4-25 (186)
433 TIGR03596 GTPase_YlqF ribosome 96.9 0.0013 2.9E-08 48.5 3.8 48 76-129 15-62 (276)
434 cd00071 GMPK Guanosine monopho 96.9 0.0012 2.5E-08 43.6 3.1 21 13-33 2-22 (137)
435 TIGR00150 HI0065_YjeE ATPase, 96.9 0.0065 1.4E-07 39.9 6.6 24 10-33 22-45 (133)
436 TIGR00235 udk uridine kinase. 96.9 0.0014 3E-08 46.3 3.7 27 7-33 3-29 (207)
437 cd03238 ABC_UvrA The excision 96.8 0.0014 2.9E-08 45.2 3.3 23 10-32 21-43 (176)
438 COG4962 CpaF Flp pilus assembl 96.8 0.0022 4.7E-08 48.4 4.5 27 10-36 173-199 (355)
439 PF13238 AAA_18: AAA domain; P 96.8 0.0012 2.7E-08 42.3 2.9 21 13-33 1-21 (129)
440 cd04178 Nucleostemin_like Nucl 96.8 0.0019 4.1E-08 44.4 3.9 46 84-131 1-46 (172)
441 COG1120 FepC ABC-type cobalami 96.8 0.0012 2.6E-08 48.0 3.0 20 13-32 31-50 (258)
442 TIGR03263 guanyl_kin guanylate 96.8 0.0013 2.8E-08 45.2 3.1 22 12-33 3-24 (180)
443 PRK03839 putative kinase; Prov 96.8 0.0015 3.3E-08 44.9 3.4 22 12-33 2-23 (180)
444 PRK14530 adenylate kinase; Pro 96.8 0.0015 3.2E-08 46.4 3.4 21 12-32 5-25 (215)
445 COG3638 ABC-type phosphate/pho 96.8 0.0013 2.8E-08 47.1 3.0 21 12-32 32-52 (258)
446 cd00820 PEPCK_HprK Phosphoenol 96.8 0.0015 3.3E-08 41.2 2.9 21 11-31 16-36 (107)
447 PRK10751 molybdopterin-guanine 96.7 0.002 4.4E-08 44.2 3.7 25 9-33 5-29 (173)
448 cd01130 VirB11-like_ATPase Typ 96.7 0.0017 3.6E-08 45.1 3.4 25 10-34 25-49 (186)
449 COG3839 MalK ABC-type sugar tr 96.7 0.0014 3E-08 49.6 3.0 22 13-34 32-53 (338)
450 PRK05416 glmZ(sRNA)-inactivati 96.7 0.032 6.9E-07 41.5 10.1 75 11-111 7-83 (288)
451 COG1117 PstB ABC-type phosphat 96.7 0.0014 3.1E-08 46.3 2.8 21 12-32 35-55 (253)
452 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.7 0.0017 3.6E-08 46.1 3.3 23 12-34 32-54 (218)
453 PRK05480 uridine/cytidine kina 96.7 0.0022 4.7E-08 45.3 3.8 26 8-33 4-29 (209)
454 PRK13949 shikimate kinase; Pro 96.7 0.0019 4.1E-08 44.2 3.4 21 12-32 3-23 (169)
455 cd01131 PilT Pilus retraction 96.7 0.012 2.7E-07 41.2 7.5 22 13-34 4-25 (198)
456 PF07728 AAA_5: AAA domain (dy 96.7 0.0019 4.2E-08 42.4 3.2 22 12-33 1-22 (139)
457 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0017 3.8E-08 44.7 3.1 22 11-32 4-25 (188)
458 cd02023 UMPK Uridine monophosp 96.7 0.0018 4E-08 45.2 3.2 21 13-33 2-22 (198)
459 COG3840 ThiQ ABC-type thiamine 96.7 0.0025 5.5E-08 44.1 3.7 25 11-35 26-50 (231)
460 cd03225 ABC_cobalt_CbiO_domain 96.7 0.0019 4.2E-08 45.5 3.3 23 12-34 29-51 (211)
461 TIGR01166 cbiO cobalt transpor 96.7 0.0018 3.8E-08 45.0 3.0 23 12-34 20-42 (190)
462 PRK10646 ADP-binding protein; 96.7 0.019 4E-07 38.7 7.7 22 12-33 30-51 (153)
463 cd03226 ABC_cobalt_CbiO_domain 96.7 0.002 4.2E-08 45.3 3.2 24 11-34 27-50 (205)
464 TIGR00960 3a0501s02 Type II (G 96.7 0.0019 4.2E-08 45.7 3.2 23 12-34 31-53 (216)
465 PF13191 AAA_16: AAA ATPase do 96.7 0.0017 3.7E-08 44.5 2.9 25 9-33 23-47 (185)
466 PRK13833 conjugal transfer pro 96.6 0.012 2.7E-07 44.4 7.6 25 10-34 144-168 (323)
467 cd01129 PulE-GspE PulE/GspE Th 96.6 0.019 4.1E-07 42.2 8.4 23 12-34 82-104 (264)
468 COG3845 ABC-type uncharacteriz 96.6 0.015 3.1E-07 45.9 8.1 53 73-127 149-202 (501)
469 PRK09563 rbgA GTPase YlqF; Rev 96.6 0.0018 3.9E-08 48.1 3.1 58 66-129 7-65 (287)
470 cd03264 ABC_drug_resistance_li 96.6 0.0018 4E-08 45.6 3.0 22 12-33 27-48 (211)
471 cd03265 ABC_DrrA DrrA is the A 96.6 0.0021 4.6E-08 45.7 3.3 23 11-33 27-49 (220)
472 cd03261 ABC_Org_Solvent_Resist 96.6 0.0021 4.5E-08 46.2 3.3 23 12-34 28-50 (235)
473 PRK13851 type IV secretion sys 96.6 0.013 2.8E-07 44.7 7.6 27 9-35 161-187 (344)
474 cd03269 ABC_putative_ATPase Th 96.6 0.0022 4.9E-08 45.2 3.3 23 12-34 28-50 (210)
475 TIGR02673 FtsE cell division A 96.6 0.0022 4.8E-08 45.3 3.3 22 12-33 30-51 (214)
476 COG1121 ZnuC ABC-type Mn/Zn tr 96.6 0.002 4.4E-08 46.8 3.0 21 12-32 32-52 (254)
477 TIGR03608 L_ocin_972_ABC putat 96.6 0.0023 5E-08 44.9 3.3 23 12-34 26-48 (206)
478 PRK08233 hypothetical protein; 96.6 0.0022 4.8E-08 43.9 3.2 23 11-33 4-26 (182)
479 PRK14531 adenylate kinase; Pro 96.6 0.0026 5.7E-08 44.0 3.5 24 10-33 2-25 (183)
480 COG0410 LivF ABC-type branched 96.6 0.0021 4.5E-08 45.8 3.0 23 12-34 31-53 (237)
481 PF13401 AAA_22: AAA domain; P 96.6 0.0021 4.6E-08 41.5 2.9 23 11-33 5-27 (131)
482 cd03292 ABC_FtsE_transporter F 96.6 0.0023 5E-08 45.2 3.3 22 12-33 29-50 (214)
483 cd03259 ABC_Carb_Solutes_like 96.6 0.0023 5.1E-08 45.2 3.3 22 12-33 28-49 (213)
484 PRK08099 bifunctional DNA-bind 96.6 0.0022 4.8E-08 49.8 3.4 25 9-33 218-242 (399)
485 cd03293 ABC_NrtD_SsuB_transpor 96.6 0.0024 5.2E-08 45.4 3.3 23 12-34 32-54 (220)
486 cd03260 ABC_PstB_phosphate_tra 96.6 0.0025 5.4E-08 45.5 3.4 23 12-34 28-50 (227)
487 TIGR02315 ABC_phnC phosphonate 96.6 0.0023 5.1E-08 46.1 3.3 23 12-34 30-52 (243)
488 cd03262 ABC_HisP_GlnQ_permease 96.6 0.0024 5.2E-08 45.1 3.3 24 11-34 27-50 (213)
489 PRK13541 cytochrome c biogenes 96.6 0.0025 5.4E-08 44.5 3.3 23 12-34 28-50 (195)
490 PRK15177 Vi polysaccharide exp 96.6 0.0035 7.6E-08 44.5 4.0 24 11-34 14-37 (213)
491 COG0802 Predicted ATPase or ki 96.6 0.015 3.2E-07 38.8 6.6 23 11-33 26-48 (149)
492 cd03218 ABC_YhbG The ABC trans 96.6 0.0025 5.4E-08 45.7 3.3 24 11-34 27-50 (232)
493 PRK00300 gmk guanylate kinase; 96.6 0.0024 5.2E-08 44.8 3.1 24 10-33 5-28 (205)
494 TIGR02211 LolD_lipo_ex lipopro 96.6 0.0025 5.5E-08 45.3 3.3 23 12-34 33-55 (221)
495 cd03266 ABC_NatA_sodium_export 96.5 0.0025 5.5E-08 45.2 3.3 24 11-34 32-55 (218)
496 cd03229 ABC_Class3 This class 96.5 0.0027 5.9E-08 43.7 3.3 23 11-33 27-49 (178)
497 KOG0459 Polypeptide release fa 96.5 0.0026 5.7E-08 48.9 3.4 119 6-128 75-230 (501)
498 cd03216 ABC_Carb_Monos_I This 96.5 0.0038 8.3E-08 42.3 4.0 108 11-125 27-142 (163)
499 cd03224 ABC_TM1139_LivF_branch 96.5 0.0025 5.4E-08 45.3 3.2 24 11-34 27-50 (222)
500 cd01428 ADK Adenylate kinase ( 96.5 0.0023 5.1E-08 44.3 2.9 22 12-33 1-22 (194)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-42 Score=229.93 Aligned_cols=157 Identities=39% Similarity=0.643 Sum_probs=147.9
Q ss_pred CCCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q 031263 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 83 (162)
Q Consensus 4 ~~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 83 (162)
....+..+||+++|+.|||||+|+.||.++.|...+.+|+|+++..+.+..+++.+++++|||+||++|+.+...||+++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccccC
Q 031263 84 AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNSNQ 160 (162)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 160 (162)
+|+|+|||+++.+||..+..|+.++.++...++|.++||||+|+.+++.++.++++.++..++.+++.++|+++..+
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~N 159 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTN 159 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccC
Confidence 99999999999999999999999999999899999999999999999999999999999999999666677766544
No 2
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9e-38 Score=213.39 Aligned_cols=154 Identities=36% Similarity=0.617 Sum_probs=148.4
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.+...+||+++|+++||||+++.+|..+.|...+..|+|+++..+.+..++..+.+++|||+||++|+.+...|++++++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNSN 159 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (162)
+++|||+++..||+.+..|+..+..+..+.+|++|||||+|+..+|+|+.+..++.+..++..++++|+..+.|
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~N 161 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFN 161 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCC
Confidence 99999999999999999999999999888999999999999999999999999999999999999988887765
No 3
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-38 Score=210.52 Aligned_cols=154 Identities=38% Similarity=0.641 Sum_probs=140.5
Q ss_pred CCCCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q 031263 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82 (162)
Q Consensus 3 ~~~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 82 (162)
..+..-+..||+++|+.+|||||||+||+.+.|...|.+|+|++|.++++.+.+..+.+++|||+||++|+.+.+.|+++
T Consensus 15 ~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rd 94 (221)
T KOG0094|consen 15 TFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 94 (221)
T ss_pred ccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccC
Confidence 34455566999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHhCCC-CCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccc
Q 031263 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCK 156 (162)
Q Consensus 83 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (162)
+.++|+|||++|..||+....|++.+...... ++.++|||||.||.++++++.+|.+..+...+-.++++|+.+
T Consensus 95 s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~ 169 (221)
T KOG0094|consen 95 SSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKA 169 (221)
T ss_pred CeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccC
Confidence 99999999999999999999999999887665 588999999999999999999999988888777555544443
No 4
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7e-38 Score=209.41 Aligned_cols=152 Identities=36% Similarity=0.632 Sum_probs=143.0
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
+...+|++++|+.|||||+|+.+|....|.+.++.|+|+++....+.++++.+++++|||+|++.|+.....||+++.+.
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNSN 159 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (162)
++|||+++++||..+..|+..+.++..++..++|+|||+|+...|.|+.+|.++++..++..+.+ .||+...
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmE-TSakt~~ 154 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFME-TSAKTAE 154 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeeh-hhhhhhh
Confidence 99999999999999999999999998899999999999999999999999999999998876664 5555443
No 5
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-37 Score=208.88 Aligned_cols=152 Identities=60% Similarity=0.894 Sum_probs=142.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
...+||+++|+.+||||||+-||..+.|.....+|+|..|..+.+..++..++|.+|||+|+++|+.+.+.||++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 46799999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNSN 159 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (162)
+|||+++.+||..++.|+.++.+...+++.+.|||||+|+.+.|+++.+++..++.+.+..++++|+.+..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~N 154 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGEN 154 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccC
Confidence 999999999999999999999999888899999999999999999999999999999898777766655443
No 6
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.6e-36 Score=197.53 Aligned_cols=152 Identities=36% Similarity=0.630 Sum_probs=141.4
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 84 (162)
......+||++||.+|||||||+-+|..+.|.+....|+|.+|..+.+.++++.+++.+|||+|+++|+.+.+.||+++.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 44566799999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccc
Q 031263 85 AAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCK 156 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (162)
++|+|||++.+++|..+..|++++..++. +++..++||||+|....|.|+.+|..+++..++..++++|+..
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt 158 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKT 158 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhh
Confidence 99999999999999999999999998864 7788889999999988999999999999999888777776644
No 7
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=3.6e-35 Score=204.26 Aligned_cols=151 Identities=27% Similarity=0.459 Sum_probs=137.5
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
.+..+||+++|+.+||||||+.+|.++.+...+.++.+.++....+..++..+.+.+||++|+++|..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999998887888888888888888899899999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
++|||++++.||+.+..|+..+.... +++|++|||||+|+...+.++.++++.++...+++++++|+..+.
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~ 153 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNF 153 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCC
Confidence 99999999999999999999997764 689999999999998888999999999988888888887766554
No 8
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=4.9e-35 Score=205.38 Aligned_cols=147 Identities=30% Similarity=0.548 Sum_probs=132.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+.|+++|+.+||||||+++|..+.|...+.+|++.++..+.+..++..+.+++||++|+++|+.++..++++++++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999999888999999988888889998999999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCC-CCCeeecccccc
Q 031263 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPG-KWPILYGNLCKN 157 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~ 157 (162)
|+++++||+.+..|+..+.+...+++|+++||||+|+...+.++.+++++++... ++.++++|+..+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg 148 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDN 148 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCC
Confidence 9999999999999999988776678999999999999888889888888776553 577777665444
No 9
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-35 Score=202.37 Aligned_cols=155 Identities=39% Similarity=0.645 Sum_probs=147.3
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 84 (162)
.+....+||++||+++||||-|+.||..++|.....+|+|.++....+.++++.++.++|||+||++|+.+...||+++.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 45567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccccc
Q 031263 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNSN 159 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (162)
+.++|||++++.+|+.+..|+.+++.+..+++++++||||+|+...|.|..++++.+++..+..++++|+....|
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tN 163 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATN 163 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEeccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999898888888776654
No 10
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.2e-36 Score=192.29 Aligned_cols=153 Identities=32% Similarity=0.555 Sum_probs=145.3
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
-...+|+++||+..+|||||+.++.+..|...+.+|.|+++..+++.-..+.+++++|||+|+++|+.+...++++++++
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 34568999999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNSN 159 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (162)
|++||+++.+||..+..|...++.++-.+.|+|+||||||+..+|.++.+..+..+...++.++++|+..|.|
T Consensus 98 iLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~Nin 170 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENIN 170 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccccccc
Confidence 9999999999999999999999999888999999999999999999999999999999999999988887765
No 11
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.1e-35 Score=190.87 Aligned_cols=152 Identities=37% Similarity=0.598 Sum_probs=143.9
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
....+|.++||++++|||+|+.+|....|...|..|+|.++..+++.++|..+++++||++|+++|+.+...|+++.+++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNSN 159 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (162)
++|||+++.+||...+.|++++...+ +.+|-++||||.|..+.+.+..++++.++...+..+|++|...+.|
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~N 156 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENEN 156 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhccc
Confidence 99999999999999999999999986 6899999999999999999999999999999999999988776654
No 12
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.4e-35 Score=196.14 Aligned_cols=153 Identities=35% Similarity=0.622 Sum_probs=137.0
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
+...+||+++|++|+|||||.|+|.+.+|.+.+..|+|.++..+.+.++++.+.+++|||+|+++|..+...+|+++|-.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCC----CCCeEEEEEeCCCCcC--cccCCHHHHhhhcCCCCC-Ceeecccccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKADLLD--ARKVTAEARSTSLCPGKW-PILYGNLCKNSN 159 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piiiv~nK~D~~~--~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 159 (162)
+++||++++.||+.+..|.+++..+.. ...|++|+|||+|+.+ .|+++...+..+|.+.+- |++++|+....|
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N 165 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN 165 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence 999999999999999999999987654 4689999999999965 499999999999987555 555544443333
No 13
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=7.2e-34 Score=196.71 Aligned_cols=151 Identities=26% Similarity=0.468 Sum_probs=133.0
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
++..+||+++|+++||||||+++|..+.+...+.||++..+ .+.+..++..+.+.+|||+|+++|..++..++++++++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 45679999999999999999999999999988899998766 46677889999999999999999999999999999999
Q ss_pred EEEEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcC------------cccCCHHHHhhhcCCCCC-Ceeec
Q 031263 87 IIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEARSTSLCPGKW-PILYG 152 (162)
Q Consensus 87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 152 (162)
++|||++++.||+.+ ..|+..+.... ++.|++|||||+|+.+ .+.++.+++++++...+. +++++
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 79999998874 6899999999999854 356899999999888775 67777
Q ss_pred ccccccc
Q 031263 153 NLCKNSN 159 (162)
Q Consensus 153 s~~~~~~ 159 (162)
|+.++.|
T Consensus 160 SAk~~~n 166 (182)
T cd04172 160 SALQSEN 166 (182)
T ss_pred CcCCCCC
Confidence 7666554
No 14
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-34 Score=187.97 Aligned_cols=154 Identities=38% Similarity=0.608 Sum_probs=144.5
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.++..+|++++|+.|+|||+|+++|+.+++......|+|+++.++.+.+.++.+++++|||+|+++|+...+.||+++.+
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNSN 159 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (162)
.++|||++++++|+++..|+..+.....+++.++++|||.|+...|+++..++..++......+.++|+-+..|
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeN 158 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN 158 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeeccccccc
Confidence 99999999999999999999999999889999999999999999999999999999998888777766655544
No 15
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.4e-33 Score=192.63 Aligned_cols=149 Identities=37% Similarity=0.613 Sum_probs=134.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
.+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+++.+||++|++++..++..++++++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999999888888888888777888888889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
||++++++|+.+..|+..+.....++.|+++||||+|+...+.+..++++..+...+++++++|+.++.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGE 150 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 999999999999999999877766789999999999998888888888888887777877777665554
No 16
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.3e-33 Score=194.49 Aligned_cols=145 Identities=31% Similarity=0.509 Sum_probs=126.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|++++|||+|+.++..+.|...+.+|++..+ ...+..++..+++.+|||+|+++|+.++..++++++++++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6999999999999999999999999988999998766 456678888999999999999999999999999999999999
Q ss_pred ECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcCcc----------cCCHHHHhhhcCCCCCC-eeecccccc
Q 031263 91 DITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDAR----------KVTAEARSTSLCPGKWP-ILYGNLCKN 157 (162)
Q Consensus 91 d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~-~~~~s~~~~ 157 (162)
|+++++||+.+ ..|+..+.... +++|++|||||+|+.+.+ .++.++++.++...+.+ ++++|+..+
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~ 158 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ 158 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence 99999999998 68999998774 689999999999996543 48888888888777764 555544443
No 17
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-34 Score=187.52 Aligned_cols=150 Identities=39% Similarity=0.615 Sum_probs=139.2
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.++..+||+++|..|+|||+|+++|..+-|++....|+|.++..+++.+++..+++++|||+|+++|+.+...|++.+++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 45678999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLC 155 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 155 (162)
++++||++-..||.-+.+|+.++.++.+.++--++||||+|+.+.|++..+..+++...+..-+.++|+.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsak 152 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAK 152 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhccc
Confidence 9999999999999999999999999988899999999999999999999999999888755544454443
No 18
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.6e-33 Score=192.74 Aligned_cols=147 Identities=26% Similarity=0.455 Sum_probs=128.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
++||+++|+++||||||++++.++.+...+.++++..+ .+.+.+++..+.+.+|||+|+++|..++..++++++++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 47999999999999999999999999988899998776 46677888999999999999999999999999999999999
Q ss_pred EECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcC------------cccCCHHHHhhhcCCCCC-Ceeecccc
Q 031263 90 YDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEARSTSLCPGKW-PILYGNLC 155 (162)
Q Consensus 90 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~ 155 (162)
||+++++||+.+ ..|+..+.+.. ++.|++|||||+|+.+ .+.++.+++++++...+. +++++|+.
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 79999998874 6899999999999854 356888999999888886 46666665
Q ss_pred ccc
Q 031263 156 KNS 158 (162)
Q Consensus 156 ~~~ 158 (162)
++.
T Consensus 159 ~~~ 161 (178)
T cd04131 159 TSE 161 (178)
T ss_pred cCC
Confidence 543
No 19
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=8.6e-33 Score=187.99 Aligned_cols=148 Identities=36% Similarity=0.604 Sum_probs=132.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|++++|||||++++.++.+.+.+.++.+.++..+.+..++..+.+.+||++|++++..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999999888999998887888888888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|+++++||+.+..|+..+......+.|+++||||.|+.+++.+..+++.......+.+++++|+.++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~ 148 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNS 148 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999987765689999999999998888888888887777666777777766654
No 20
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=9.3e-33 Score=188.75 Aligned_cols=149 Identities=37% Similarity=0.611 Sum_probs=132.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
..+||+++|++++|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999999998889999988888888888888999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
|||++++++|..+..|+..+.+....+.|+++||||+|+.+.+.+..++++..+...+++++++|+..+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 150 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKAN 150 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 999999999999999999998876678999999999999887778877777777766777776666544
No 21
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.1e-32 Score=188.04 Aligned_cols=147 Identities=35% Similarity=0.599 Sum_probs=129.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|++++|||||++++.++++...+.++.+.++....+..++..+.+.+||++|++++..++..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888899988877777777888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
|++++++|+++..|+..+.......+|+++|+||+|+.+.+.+..+++++.....+++++++|+..+
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKEN 148 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCC
Confidence 9999999999999999998776568899999999999887777777776666666777777655443
No 22
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.5e-32 Score=188.73 Aligned_cols=148 Identities=27% Similarity=0.475 Sum_probs=130.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
.+||+++|+++||||||++++.++++...+.++.+..+ ...+..++..+.+.+||++|+.++..++..++++++++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 57999999999999999999999999888888887555 45567888889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
||++++.||+.+..|+..+.+.. .+++|+++||||+|+.+.+.++.++++..+...+++++++|+..+.
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~ 150 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRH 150 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCC
Confidence 99999999999999988887753 3689999999999998888888888888877778887777766553
No 23
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=2.3e-32 Score=190.69 Aligned_cols=146 Identities=28% Similarity=0.442 Sum_probs=124.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
.+||+++|+.+||||||+.++..+.+...+.+|++..+ .+.+..++..+.+.+|||+|+++|+.++..+++++|++++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 58999999999999999999999999888899998765 44566788889999999999999999999999999999999
Q ss_pred EECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCcc------------cCCHHHHhhhcCCCC-CCeeecccc
Q 031263 90 YDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEARSTSLCPGK-WPILYGNLC 155 (162)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~ 155 (162)
||+++++||+.+. .|+..+.... +++|++|||||.|+.+.+ .++.++++.++...+ ++++++|+.
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999997 6988887653 689999999999996542 356667777766655 567777755
Q ss_pred cc
Q 031263 156 KN 157 (162)
Q Consensus 156 ~~ 157 (162)
.+
T Consensus 161 ~g 162 (191)
T cd01875 161 NQ 162 (191)
T ss_pred CC
Confidence 44
No 24
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.7e-32 Score=194.70 Aligned_cols=150 Identities=24% Similarity=0.406 Sum_probs=131.0
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.....+||+++|+.+||||+|+++|.++.|...+.++++.++ ...+.+++..+.+.+|||+|+++|..++..+++++++
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 345679999999999999999999999999988999998776 4567788999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHH-HHHHHHHHHHhCCCCCeEEEEEeCCCCcC------------cccCCHHHHhhhcCCCCCC-eee
Q 031263 86 AIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEARSTSLCPGKWP-ILY 151 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~~-~~~ 151 (162)
+++|||+++++||+. +..|+..+.... ++.|++|||||+|+.. .+.++.+++++++...+.. +++
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 999999999999998 489999998764 6789999999999854 3678899999999888874 666
Q ss_pred cccccc
Q 031263 152 GNLCKN 157 (162)
Q Consensus 152 ~s~~~~ 157 (162)
+|+..+
T Consensus 167 tSAktg 172 (232)
T cd04174 167 CSAFTS 172 (232)
T ss_pred ccCCcC
Confidence 665544
No 25
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.8e-32 Score=191.70 Aligned_cols=147 Identities=31% Similarity=0.552 Sum_probs=128.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
+||+++|+++||||||+++|.++.+...+.++.+.++....+..+ +..+.+.+||++|++.+..++..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988889999988877777777 7889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhC----CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCC-CCeeecccccc
Q 031263 90 YDITNQASFERAKKWVQELQAQG----NPNMVMALAGNKADLLDARKVTAEARSTSLCPGK-WPILYGNLCKN 157 (162)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~ 157 (162)
||++++++|+.+..|+..+.... ..++|++|||||+|+...+.+..++++..+...+ ++++++|+..+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~ 153 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEG 153 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCC
Confidence 99999999999999999886532 3678999999999998777888888888777766 56666555544
No 26
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=3e-32 Score=185.91 Aligned_cols=148 Identities=41% Similarity=0.644 Sum_probs=133.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
.+||+++|+++||||||++++.++.+...+.++.+.++..+.+..++..+++.+||+||++++...+..++++++++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999999888889998888888888888889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
||+++++||..+..|+..+.....++.|+++++||+|+...+.+..++++..+...+++++++|+.++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 149 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNA 149 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCC
Confidence 99999999999999999998876578999999999999888888888888777777788877776654
No 27
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=3.3e-32 Score=184.87 Aligned_cols=146 Identities=38% Similarity=0.648 Sum_probs=134.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 91 (162)
||+++|+++||||||+++|.++.+...+.++.+.+...+.+..++..+.+++||++|++++..++..+++.++++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 92 ITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+++++||+.+..|+..+......++|++++|||.|+.+.+.++.++++.++..++.+++++|+..+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 146 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNG 146 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTT
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCC
Confidence 999999999999999999987667999999999999888999999999888888877777665443
No 28
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=5.6e-32 Score=184.29 Aligned_cols=148 Identities=25% Similarity=0.545 Sum_probs=131.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|+++||||||++++.++.+...+.++.+.++..+.+..++..+.+++||++|++.+..++..+++.++++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999999889999999988888888898999999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhCC-----CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 91 DITNQASFERAKKWVQELQAQGN-----PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~-----~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|.+++++|+.+..|+..+..... .+.|+++|+||+|+...+.+..++.+..+...+++++++|+.++.
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 153 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGE 153 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 99999999999999999987643 479999999999997667777777777776667777777666553
No 29
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=9.7e-32 Score=183.93 Aligned_cols=150 Identities=35% Similarity=0.616 Sum_probs=133.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
..+||+++|.+++|||||++++.++.+...+.++.+.++....+..++....+.+||++|++++..+...+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999999888888888888888888888888999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|||++++++|+.+..|+..+.....++.|+++|+||.|+.+++.+..++.+..+...+++++++|+.++.
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 152 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTAS 152 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 9999999999999999999988766789999999999998777788888877777777777776665543
No 30
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=7e-32 Score=186.32 Aligned_cols=149 Identities=31% Similarity=0.552 Sum_probs=129.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEEC----------CeEEEEEEEeCCCccccccchhh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN----------DATVKFEIWDTAGQERYHSLAPM 78 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~D~~g~~~~~~~~~~ 78 (162)
..+||+++|+++||||||++++.++.+...+.++++.++....+... +..+.+.+||++|++++..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 46999999999999999999999999998889999888776666554 45689999999999999999999
Q ss_pred hhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+++++|++++|||+++++||..+..|+..+.... .++.|+++|+||+|+.+.+.++.+++++++...+.+++++|+.++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999999999999999987753 357899999999999888888888888777777777776655544
No 31
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=7.1e-32 Score=185.84 Aligned_cols=147 Identities=25% Similarity=0.424 Sum_probs=124.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
.+||+++|+++||||||++++.++.|...+.|+++..+. ..+..++..+.+.+||++|++++..++..++++++++++|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999998888999987663 4566788889999999999999999999999999999999
Q ss_pred EECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCc------------ccCCHHHHhhhcCCCC-CCeeecccc
Q 031263 90 YDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEARSTSLCPGK-WPILYGNLC 155 (162)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~ 155 (162)
||++++++|+.+. .|+..+.... +++|+++||||+|+.+. +.++.+++++.+...+ +.++++|+.
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999997 5998887764 67999999999998543 5677777777766554 567776665
Q ss_pred ccc
Q 031263 156 KNS 158 (162)
Q Consensus 156 ~~~ 158 (162)
++.
T Consensus 159 tg~ 161 (175)
T cd01874 159 TQK 161 (175)
T ss_pred CCC
Confidence 543
No 32
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=8.4e-32 Score=183.58 Aligned_cols=149 Identities=42% Similarity=0.674 Sum_probs=128.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
..+||+++|++|+|||||++++.++.+...+.++.+.++..+.+..++....+.+||+||++++..++..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999999888888888888777888888888899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCC-Ceeeccccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKW-PILYGNLCKNS 158 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 158 (162)
|||++++.+|+.+..|+..+......++|+++|+||+|+.+.+.+..++++..+...+. .++++ |++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~-Sa~~~ 151 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLET-SAKES 151 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEE-ECCCC
Confidence 99999999999999999999887567899999999999987777777777766665554 44554 44444
No 33
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1e-31 Score=182.39 Aligned_cols=147 Identities=43% Similarity=0.678 Sum_probs=132.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|++++|||||++++.++++...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888889988888888888888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
|++++++|..+..|+..+.....+++|+++++||+|+...+.+..+++...+...++.++++|+.++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTG 147 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCC
Confidence 9999999999999999988776689999999999999887888888888777777777777666443
No 34
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.3e-31 Score=182.52 Aligned_cols=148 Identities=39% Similarity=0.689 Sum_probs=131.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
.+||+++|.++||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||+.++..++..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 58999999999999999999999999888889999888888888888888999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
||++++.+|+.+..|+..+......++|+++|+||+|+...+.+..++....+...+++++++|+.++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 150 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDG 150 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCC
Confidence 99999999999999999998876567999999999999887877777777776656667777666554
No 35
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.3e-31 Score=188.05 Aligned_cols=149 Identities=37% Similarity=0.602 Sum_probs=131.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
+..+||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999999998888899988887788888888889999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+|||++++++|+.+..|+..+.... +..|+++||||+|+...+.+..+++...+...+++++++|+.++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 152 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKEN 152 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCC
Confidence 9999999999999999999987763 67899999999999877777878777777666788777665544
No 36
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.1e-31 Score=185.89 Aligned_cols=146 Identities=25% Similarity=0.527 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|+.+||||||+++|.++.+...+.+|.+.++..+.+..++..+.+.+||++|+++|..++..++++++++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999889999999988888888988999999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc-----ccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA-----RKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
|+++++||+.+..|+..+.+......| ++||||+|+... .....++++.++...+++++++|+..+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g 151 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHS 151 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCC
Confidence 999999999999999999876545677 578999998521 111234455555556677777665544
No 37
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.9e-31 Score=185.54 Aligned_cols=147 Identities=37% Similarity=0.638 Sum_probs=130.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|+++||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998878899998888888888888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
|++++++|..+..|+..+........|+++++||+|+.+.+.+...+++.++...+++++++|+.++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 147 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQS 147 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999998876667899999999999877888877777776666777777766544
No 38
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.7e-33 Score=182.71 Aligned_cols=150 Identities=36% Similarity=0.675 Sum_probs=135.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
.+++++||++-+|||+|++.|..++++.-.+||.|.++....++. +|..+++++|||+|+++|+.+.+.||++.-++++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll 87 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL 87 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence 589999999999999999999999999989999999998877766 6678999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhCC-C-CCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQGN-P-NMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNSN 159 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (162)
|||+++++||+.+..|+.+...+.. | ++.+++||+|+|+...|+|+.+|+++++..++..++++|+..+-|
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~N 160 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCN 160 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCc
Confidence 9999999999999999999877643 4 455789999999999999999999999999999888877655433
No 39
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=2e-31 Score=189.25 Aligned_cols=152 Identities=39% Similarity=0.679 Sum_probs=136.2
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
.+..+||+++|+++||||||+++|.++.+...+.++++.++..+.+..++..+.+.+||++|++++..++..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 44679999999999999999999999999888889999998888888888889999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
++|||++++.+|+.+..|+..+......++|+++|+||+|+...+.++.++++......+++++++|+..+.
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~ 160 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEAT 160 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 999999999999999999999988766789999999999998888888888877766677778887765554
No 40
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=2e-31 Score=185.73 Aligned_cols=149 Identities=29% Similarity=0.462 Sum_probs=128.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
..+||+++|++++|||||++++.++.+...+.++.+..+ .+.+.+++..+.+.+|||+|++++..++..+++.++++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 469999999999999999999999998887888887665 5667788888999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|||++++++|+.+..|+..+.+.. .+++|+++|+||+|+.+.+.+...++.......+++++++|+.++.
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~ 153 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRV 153 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCC
Confidence 999999999999999999987753 3688999999999998777788777776666667777776655543
No 41
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=2.8e-31 Score=180.26 Aligned_cols=146 Identities=34% Similarity=0.619 Sum_probs=128.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEEC--CeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN--DATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
+||+++|.+++|||||++++.++.+...+.++.+.++....+... +..+.+.+||+||++++..++..++++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999988888999888877777666 677899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
|||++++++|+.+..|+..+.... .++|+++|+||+|+...+.++.++++......+++++++|+..+
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDD 148 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCC
Confidence 999999999999999999987653 68999999999999887888877777777667778777666554
No 42
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=4.2e-31 Score=180.87 Aligned_cols=149 Identities=32% Similarity=0.538 Sum_probs=128.3
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
+...+||+++|++++|||||++++.++.+...+.++.+.++..+.+..++..+.+.+||++|++++..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34569999999999999999999999999888888998888778888899999999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhC----CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCC-Ceeeccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQG----NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKW-PILYGNLCK 156 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~ 156 (162)
++|||++++++|+.+..|+..+.... ..++|+++|+||+|+. .+.+..+++++.+...++ +++++|+..
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 155 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKD 155 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCC
Confidence 99999999999999999999887643 2568999999999986 566777788777766664 555555443
No 43
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=3.3e-31 Score=188.05 Aligned_cols=147 Identities=31% Similarity=0.457 Sum_probs=128.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
+||+++|+++||||||+++|.++.+...+.++.+.++..+.+..++ ..+.+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888999999988888887754 578999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 90 YDITNQASFERAKKWVQELQAQGN---PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
||++++++|+.+..|+..+..... .++|+++|+||+|+.+.+.+..++.+......+++++++|+.++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg 151 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTG 151 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCC
Confidence 999999999999999999987642 45789999999999888888888888777777777777655543
No 44
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=3.2e-31 Score=180.05 Aligned_cols=147 Identities=31% Similarity=0.485 Sum_probs=123.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
.+||+++|+++||||||++++.++.+...+.++.+ +...+.+..++..+.+.+||++|++++..++..++++++++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 37999999999999999999999998877778776 34456677888889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
||++++++|+.+..|+..+.... .+++|+++|+||+|+.+.+.+..++........+.+++++|+.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSK 148 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCC
Confidence 99999999999999999987753 368999999999999777777766666555555566777665544
No 45
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.98 E-value=5.5e-31 Score=180.65 Aligned_cols=146 Identities=29% Similarity=0.533 Sum_probs=122.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 91 (162)
||+++|+++||||||++++.++.+...+.++++.++..+.+..++..+.+++||++|+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 89999999999999999999999998899999988887888888888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccC--CHHHHhhhcCCCCCCeeecccccc
Q 031263 92 ITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKV--TAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
++++++++.+..|+..+.+.. ...+|+++|+||+|+...+.. ..+++.......+.+++++|+..+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g 150 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSG 150 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCC
Confidence 999999999999999986653 346789999999999655443 344444444444556666655443
No 46
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.98 E-value=6e-31 Score=187.12 Aligned_cols=147 Identities=31% Similarity=0.490 Sum_probs=125.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
...+||+++|++|||||||++++..+.+...+.++++.++....+..++..+.+.+||++|+++|..++..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67799999999999999999999999999889999998888777777778899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+|||++++++|+.+..|+..+.... ++.|++|||||+|+.+ +.+..++. .+....+++++++|+.++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~ 157 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSN 157 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCC
Confidence 9999999999999999999998764 6899999999999854 34444444 344445666776655544
No 47
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.98 E-value=4.3e-31 Score=179.65 Aligned_cols=147 Identities=30% Similarity=0.489 Sum_probs=124.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
++||+++|.+++|||||++++.++.+...+.++.+ ++....+..++....+.+||++|++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999999887777775 44566777888888999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
||++++.+|+++..|+..+.... ..++|+++|+||+|+...+.+...+........+++++++|+.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSK 148 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCC
Confidence 99999999999999999887753 368999999999999777777766666665555667777666554
No 48
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.98 E-value=6.3e-31 Score=180.22 Aligned_cols=148 Identities=33% Similarity=0.587 Sum_probs=130.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-cchhhhhcCCcEEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-SLAPMYYRGAAAAI 87 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i 87 (162)
+.+||+++|++|+|||||++++..+.+...+.++.+.++..+.+..++..+.+.+||++|++++. .++..+++.+|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 35899999999999999999999999988888999888888888888988999999999999886 57888899999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCK 156 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (162)
+|||++++++|..+..|+..+.... ..++|+++|+||+|+.+.+.+...++........++++++|+..
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKD 150 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccC
Confidence 9999999999999999999988764 36799999999999988888888887777777677777765554
No 49
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.98 E-value=4.7e-31 Score=179.68 Aligned_cols=147 Identities=30% Similarity=0.473 Sum_probs=125.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
.+||+++|.+|+|||||++++..+.+...+.++++..+ .+.+..++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 36999999999999999999999988877778887654 45677788889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
||++++.+|+.+..|+..+.... .++.|+++|+||+|+...+.++..+........+++++++|+.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAK 148 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCC
Confidence 99999999999999999987643 478999999999999877777776666665656677777766554
No 50
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.3e-33 Score=184.67 Aligned_cols=156 Identities=31% Similarity=0.589 Sum_probs=143.2
Q ss_pred CCCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEEC---------CeEEEEEEEeCCCcccccc
Q 031263 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN---------DATVKFEIWDTAGQERYHS 74 (162)
Q Consensus 4 ~~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~D~~g~~~~~~ 74 (162)
++.+...+|++.+|++|+|||+++.++..++|..+...|.|+++..+.+..+ +..+.+++|||+|+++|+.
T Consensus 3 ~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS 82 (219)
T KOG0081|consen 3 DGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS 82 (219)
T ss_pred CccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH
Confidence 4566778999999999999999999999999999999999999988877652 3468899999999999999
Q ss_pred chhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecc
Q 031263 75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGN 153 (162)
Q Consensus 75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 153 (162)
+...+++++-+++++||+++..||.++..|+..+..+.- .++-+++.|||+|+.+.|.|++.++.+.+...+.|++++|
T Consensus 83 LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS 162 (219)
T KOG0081|consen 83 LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETS 162 (219)
T ss_pred HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence 999999999999999999999999999999999988653 6777999999999999999999999999999999999999
Q ss_pred cccccc
Q 031263 154 LCKNSN 159 (162)
Q Consensus 154 ~~~~~~ 159 (162)
+|...|
T Consensus 163 A~tg~N 168 (219)
T KOG0081|consen 163 ACTGTN 168 (219)
T ss_pred cccCcC
Confidence 998866
No 51
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.98 E-value=5.7e-31 Score=186.95 Aligned_cols=148 Identities=24% Similarity=0.414 Sum_probs=125.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
++||+|+|+++||||+|+++|..+.+...+.||++.++. ..+.+++..+.+.+|||+|++.|..++..+++++|++++|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 479999999999999999999999999889999987764 5677889999999999999999999999999999999999
Q ss_pred EECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcCc------------ccCCHHHHhhhcCCCCC-Ceeecccc
Q 031263 90 YDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEARSTSLCPGKW-PILYGNLC 155 (162)
Q Consensus 90 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 155 (162)
||++++++|+.+ ..|...+... .+++|++|||||+|+... .+++.++++..+...+. +++++|+.
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 999999999998 4788777655 478999999999998542 24667777777776664 67777776
Q ss_pred cccc
Q 031263 156 KNSN 159 (162)
Q Consensus 156 ~~~~ 159 (162)
.+.+
T Consensus 159 ~~~~ 162 (222)
T cd04173 159 SSER 162 (222)
T ss_pred cCCc
Confidence 5543
No 52
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=9.3e-31 Score=182.62 Aligned_cols=147 Identities=37% Similarity=0.645 Sum_probs=128.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
+||+++|++++|||||++++.++.+.. .+.++.+.++....+.+++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998863 5678888777777778888889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
||++++++|+.+..|+..+.......+|+++|+||+|+...+.+..++.+......+++++++|+.++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~ 148 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTG 148 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 99999999999999999998876668999999999999877777777777766666777777766554
No 53
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=1e-30 Score=185.00 Aligned_cols=149 Identities=34% Similarity=0.625 Sum_probs=130.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
.+||+++|+++||||||++++.++.+...+.++++.++..+.+.. ++..+.+++||++|++.+..++..+++.++++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999998888899998888877776 4667899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|||+++++||+.+..|+..+..... ..+|+++|+||+|+...+.+..++........+++++++|+..+.
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~ 152 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGD 152 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCC
Confidence 9999999999999999999877543 467899999999998888888888887777777777776665543
No 54
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.98 E-value=1.4e-30 Score=176.89 Aligned_cols=148 Identities=46% Similarity=0.770 Sum_probs=131.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|++++|||||++++.+..+...+.++.+.++....+..++....+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999988888889988887888888888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|++++.+++.+..|+..+..+..+++|+++++||+|+...+.+..+.++..+...+++++++|+.++.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 148 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNT 148 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 99999999999999999988766789999999999998777777777777777777887777665543
No 55
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.98 E-value=1.5e-30 Score=176.44 Aligned_cols=147 Identities=37% Similarity=0.667 Sum_probs=129.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
.||+++|+++||||||++++++..+...+.++.+.++....+..++....+++||+||+..+..++..+++.++++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888899998888888888888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
|++++++|+.+..|+..+......+.|+++++||+|+..++.+..++........+++++++|+..+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAG 147 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999987765457999999999999777777777777766666677776555544
No 56
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=183.89 Aligned_cols=150 Identities=34% Similarity=0.623 Sum_probs=133.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
...+||+++|++++|||||++++.+..+...+.++++.++....+.+++..+.+.+||++|++.+..++..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 35699999999999999999999999988888889998888888888888899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+|||++++++|+.+..|+..+.....++.|+++++||+|+...+.++.++.++++...+++++++|+.++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 153 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 9999999999999999999887765678999999999999888888888888888777777776665443
No 57
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=6.2e-31 Score=183.36 Aligned_cols=146 Identities=29% Similarity=0.492 Sum_probs=124.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 91 (162)
||+++|+++||||||+++|.++.+...+.++.+..+ ...+..++..+.+++|||+|+++|..++..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999998877888887554 4456678888899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 92 ITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+++++||+.+..|+..+.... ..++|+++||||+|+...+.+...++.......+++++++|+..+.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~ 149 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNV 149 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCC
Confidence 999999999999999887643 2578999999999998778888777776666667777777666543
No 58
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=1.4e-30 Score=179.22 Aligned_cols=147 Identities=28% Similarity=0.435 Sum_probs=122.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
.+||+++|+++||||||+.++.++.+...+.++.+..+ ...+..++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 37999999999999999999999999888888886443 55666788889999999999999999999999999999999
Q ss_pred EECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCc------------ccCCHHHHhhhcCCCCC-Ceeecccc
Q 031263 90 YDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEARSTSLCPGKW-PILYGNLC 155 (162)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 155 (162)
||+++++||+.+. .|+..+.... +++|+++||||+|+.+. +.++.+++...+...+. +++++|+.
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999996 6988887653 68999999999999543 35777777777766664 55665555
Q ss_pred ccc
Q 031263 156 KNS 158 (162)
Q Consensus 156 ~~~ 158 (162)
++.
T Consensus 159 ~~~ 161 (174)
T cd01871 159 TQK 161 (174)
T ss_pred ccC
Confidence 543
No 59
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.97 E-value=2.7e-30 Score=176.54 Aligned_cols=145 Identities=33% Similarity=0.558 Sum_probs=121.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|+++||||||+++++++.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888899988877777777888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|++++++|+.+..|+..+.... .++|+++||||+|+.+ +.+..+ .........++++++|+..+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~piiiv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~ 145 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC-GNIPIVLCGNKVDIKD-RKVKAK-QITFHRKKNLQYYEISAKSNY 145 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhccc-ccCCHH-HHHHHHHcCCEEEEEeCCCCC
Confidence 9999999999999999998875 4899999999999973 334333 333444456667776555543
No 60
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=2.8e-30 Score=175.55 Aligned_cols=145 Identities=31% Similarity=0.559 Sum_probs=121.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|.++||||||++++.++++.+.+.++.+.+........++..+.+.+|||+|++++..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998877788877776777778888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccccc
Q 031263 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNSN 159 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (162)
|++++.+++.+..|+..+.+. .++.|+++|+||+|+... . ..+...+....+++++++|+.++.|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~-~~~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~g 145 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPS--V-TQKKFNFAEKHNLPLYYVSAADGTN 145 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEECccCchh--H-HHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 999999999999999999775 367899999999998432 1 2333334444567788876665543
No 61
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=2.4e-30 Score=183.60 Aligned_cols=131 Identities=39% Similarity=0.651 Sum_probs=113.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|.++||||||+++|.++.+.. +.++++.++..... ..+.+.+||++|++.|..++..++++++++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999875 57788766544432 4578999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC-------------------cccCCHHHHhhhcCCCC
Q 031263 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD-------------------ARKVTAEARSTSLCPGK 146 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~ 146 (162)
|++++++|+.+..|+..+.+...+++|++|||||+|+.+ .+.++.++++.++...+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~ 150 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRIN 150 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhC
Confidence 999999999999988888776557899999999999975 68888888888776544
No 62
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=3.4e-30 Score=175.76 Aligned_cols=147 Identities=27% Similarity=0.389 Sum_probs=123.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|++|||||||++++.++.+...+.++.+..+ ...+..+...+.+.+||++|++++..++..+++.++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999999877778876554 445556777899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 91 DITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|++++++|+.+..|+..+.... .+++|+++|+||+|+...+.+..+++........++++++|+.++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~ 151 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNH 151 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCC
Confidence 9999999999999988887643 2679999999999997777777777766666556667776666553
No 63
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=4.8e-30 Score=174.30 Aligned_cols=148 Identities=60% Similarity=0.891 Sum_probs=130.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
.+||+++|++++|||||+++++++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998887888888888788888899899999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
||+++++++.....|+..+.....+.+|+++++||+|+...+.+..++....+...+++++++|+.++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTG 148 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCC
Confidence 99999999999999999998876678999999999999877777777777777666677666665544
No 64
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=3.3e-30 Score=180.67 Aligned_cols=146 Identities=25% Similarity=0.411 Sum_probs=120.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEEC-----CeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-----DATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
+||+++|+.+||||||++++.++.+...+.+|++.++..+.+..+ +..+.+++||++|+++|..++..+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999998889999988777776663 467899999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHh-------------------CCCCCeEEEEEeCCCCcCcccCCHHHHhh----hc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQ-------------------GNPNMVMALAGNKADLLDARKVTAEARST----SL 142 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-------------------~~~~~piiiv~nK~D~~~~~~~~~~~~~~----~~ 142 (162)
+|+|||+++++||+.+..|+..+... ...++|++|||||+|+.+.+.++...... .+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 99999999999999999999999763 13579999999999998777666553221 22
Q ss_pred CCCCCCeeecccccc
Q 031263 143 CPGKWPILYGNLCKN 157 (162)
Q Consensus 143 ~~~~~~~~~~s~~~~ 157 (162)
...+.+.++. .|.+
T Consensus 161 ~~~~~~~i~~-~c~~ 174 (202)
T cd04102 161 EQGNAEEINL-NCTN 174 (202)
T ss_pred HhcCCceEEE-ecCC
Confidence 3345555554 3443
No 65
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=4.7e-30 Score=174.43 Aligned_cols=148 Identities=28% Similarity=0.456 Sum_probs=125.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
+.+||+++|.+++|||||+++++++.+...+.++.+..+ ......++..+.+.+||+||++++..++..+++++|++++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 358999999999999999999999988777777776444 4556678888899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
|||++++.+|+.+..|+..+.+. ...+.|+++++||+|+..++.+..++....+...+++++++|+..+
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 149 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDR 149 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCC
Confidence 99999999999999999988765 3368899999999999877777777777777766777777666554
No 66
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=5.2e-30 Score=173.61 Aligned_cols=146 Identities=26% Similarity=0.461 Sum_probs=122.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
.+||+++|++|||||||++++.++.+...+.++.+..+ .+.+..++....+.+||++|++++..++..+++.++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999998887888877554 55667788888899999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
||++++.+|+.+..|+..+.+.. ..+.|+++|+||+|+.. +.+...++.......+++++++|+..+
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTR 147 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCC
Confidence 99999999999999999887764 35889999999999865 455566666666666777777665444
No 67
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-30 Score=168.29 Aligned_cols=156 Identities=35% Similarity=0.583 Sum_probs=145.1
Q ss_pred CCCCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q 031263 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82 (162)
Q Consensus 3 ~~~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 82 (162)
.+.+....+|.+++|+-|+|||+|+.+|...+|...-..++|.++....+.+.+..+++++|||+|+++|+...+.|+++
T Consensus 4 ~pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrg 83 (215)
T KOG0097|consen 4 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG 83 (215)
T ss_pred CccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 45567788999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 83 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+.+.++|||++.++.+..+..|+.......+|+..++++|||.|+...|.+.-++++++.+..+..+.++|+.+..
T Consensus 84 aagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~ 159 (215)
T KOG0097|consen 84 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQ 159 (215)
T ss_pred ccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccC
Confidence 9999999999999999999999999999888999999999999999999999999999999988877776655443
No 68
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=4.9e-30 Score=174.49 Aligned_cols=146 Identities=31% Similarity=0.517 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|++|||||||++++.++.+...+.++.+.. ..+.+..++..+.+.+||+||++++..++..+++.++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 489999999999999999999998887777777633 3566677888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 91 DITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
|++++++|+.+..|+..+.+.. ..+.|+++|+||+|+...+.++.+++.......+.+++++|+.++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKER 147 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCC
Confidence 9999999999999998886643 357899999999999877777777766666655666777666554
No 69
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=9.7e-30 Score=173.04 Aligned_cols=146 Identities=29% Similarity=0.493 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC--CCCCCCccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
+||+++|+++||||||++++..+ .+...+.++.+.++....+..+ +....+.+||++|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6777888999888777766664 56799999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.+.+.+...+++......+++++++|+.++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 149 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRG 149 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999999988774 67899999999999877777766655554444566666555443
No 70
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=7.2e-30 Score=177.86 Aligned_cols=145 Identities=27% Similarity=0.471 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
.||+++|+++||||||+++|.++.+...+.++.+..+ ...+..++....+.+||++|++.+..++..++++++++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 4899999999999999999999999888888887765 345667788899999999999999999999999999999999
Q ss_pred ECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCcc------------cCCHHHHhhhcCCCC-CCeeeccccc
Q 031263 91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEARSTSLCPGK-WPILYGNLCK 156 (162)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~~ 156 (162)
|++++++|+.+. .|+..+.... ++.|+++||||+|+.+.+ .+..+++...+...+ ++++++|+..
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 6999988764 689999999999996654 244455555554444 4566655544
Q ss_pred c
Q 031263 157 N 157 (162)
Q Consensus 157 ~ 157 (162)
+
T Consensus 159 ~ 159 (189)
T cd04134 159 N 159 (189)
T ss_pred C
Confidence 3
No 71
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.9e-29 Score=172.40 Aligned_cols=154 Identities=36% Similarity=0.600 Sum_probs=131.7
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
+.+..+||+++|.+++|||||++++.++.+.+.+.++.+.++..+.+...+..+.+.+||++|+..+...+..+++.+|+
T Consensus 3 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 82 (169)
T cd04114 3 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANA 82 (169)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 34567999999999999999999999988887788888888878888888888899999999999999998999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNSN 159 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (162)
+++|||++++.+++.+..|+..+......++|+++++||+|+...+.+..+..+.......++++++|+.++.+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 156 (169)
T cd04114 83 LILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDN 156 (169)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 99999999999999999999998887656899999999999987777776665555554456777777666543
No 72
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=7.6e-30 Score=177.24 Aligned_cols=145 Identities=28% Similarity=0.480 Sum_probs=120.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
+||+++|++++|||||++++.++.+...+.++.+.++.. .+... +..+.+.+|||+|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999988888888776644 34454 6778999999999999999999999999999999
Q ss_pred EECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCc----ccCCHHHHhhhcCCCCC-Ceeecccccc
Q 031263 90 YDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA----RKVTAEARSTSLCPGKW-PILYGNLCKN 157 (162)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 157 (162)
||+++++||+.+. .|+..+... .+++|+++||||+|+... +.+..+++++.+...++ +++++|+.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 152 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTM 152 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCC
Confidence 9999999999986 598888765 368999999999998653 35667777777766666 6666664443
No 73
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=7e-30 Score=179.01 Aligned_cols=140 Identities=31% Similarity=0.526 Sum_probs=120.7
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCCh
Q 031263 16 LGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ 95 (162)
Q Consensus 16 iG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 95 (162)
+|+++||||||+++++++.+...+.++++.++....+..++..+.+.+||++|+++|..++..++++++++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888899999998888888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 96 ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 96 ~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
.||+.+..|+..+.+.. +++|++|||||+|+.. +.+..+.. ..+...+++++++|+..+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~ 140 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKSI-TFHRKKNLQYYDISAKSNY 140 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHHH-HHHHHcCCEEEEEeCCCCC
Confidence 99999999999998874 6899999999999854 44554443 4445567887776655443
No 74
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=1.5e-29 Score=176.64 Aligned_cols=146 Identities=40% Similarity=0.641 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
+||+++|++++|||||+++|.++.+.. .+.++++.++..+.+..++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998874 6788898888788888899889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc----ccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA----RKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
||++++.+|+.+..|+..+... .++.|+++|+||+|+... +.+..+++..+....+++++++|+.++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTG 151 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999998776 357899999999998542 345555566655555667776655443
No 75
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=2e-29 Score=170.79 Aligned_cols=147 Identities=41% Similarity=0.673 Sum_probs=127.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|.+++|||||++++.+..+...+.++.+.......+...+....+.+||++|+..+..++..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999888767777777776777777777889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
|++++++++.+..|+..+......++|+++++||+|+...+.+..++.+......+++++++|+.++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 147 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTG 147 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 9999999999999999998876568999999999999877777777777666666777777765554
No 76
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=4.7e-30 Score=175.86 Aligned_cols=148 Identities=18% Similarity=0.133 Sum_probs=120.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
++.+||+++|++|||||||+++|+++.+. ..+.+|.+.++....+..++....+.+||++|+..+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 45699999999999999999999999998 77889998888777788888888999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCC-eeecccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWP-ILYGNLCKN 157 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~ 157 (162)
++|||++++.+|+.+..|+..+... .++|+++|+||+|+.+.+.+...+.+......++. ++++|+.+.
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccC
Confidence 9999999999999999998876432 47899999999999665544333333333333443 455555444
No 77
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=9e-30 Score=183.73 Aligned_cols=146 Identities=24% Similarity=0.374 Sum_probs=123.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|+++||||||+++|+++.+...+.++++ ++..+.+.+++..+.+.+|||+|++.|..++..++..+|++++||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999887888886 555677778888899999999999999888888899999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHh---------CCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCC-CCCCeeecccccc
Q 031263 91 DITNQASFERAKKWVQELQAQ---------GNPNMVMALAGNKADLLDARKVTAEARSTSLCP-GKWPILYGNLCKN 157 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~---------~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~ 157 (162)
|+++++||+++..|+..+... ...++|+++|+||+|+...+.+..++..+.+.. ..+.++++|+.++
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg 156 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKN 156 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 999999999999999988653 235799999999999987777887877776543 3455666665544
No 78
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=2.9e-31 Score=173.56 Aligned_cols=153 Identities=39% Similarity=0.629 Sum_probs=141.1
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.+...+|++++|..=+|||||+-||..++|.....+|+...|..+.+.+.+...++.+|||+|+++|+.+-+.||++.++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 55678999999999999999999999999998888888888888999999999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
.++|||++|++||+.++.|..++...-...+-++|||||+|+.++|.++.++++.++.+.+-..+++|+..|.
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~ 161 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNV 161 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheeccccccc
Confidence 9999999999999999999999999877888999999999999999999999999999888777776665553
No 79
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=2.8e-29 Score=175.98 Aligned_cols=148 Identities=24% Similarity=0.269 Sum_probs=118.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------chhhhhcC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LAPMYYRG 82 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~ 82 (162)
+||+++|.++||||||++++.++.+...+.|+.+.+.....+..++..+.+.+|||+|...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888887776666677788889999999999754321 12344788
Q ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCCcCcccCCHHHHhhhcC-CCCCCeeeccccccc
Q 031263 83 AAAAIIVYDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEARSTSLC-PGKWPILYGNLCKNS 158 (162)
Q Consensus 83 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~ 158 (162)
+|++++|||+++++||+.+..|+..+.... .+++|+++|+||+|+...+.+..++.+.... ....+++++|+.++.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999999887753 4679999999999997777777666554433 345666776666554
No 80
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=2.4e-29 Score=170.57 Aligned_cols=141 Identities=20% Similarity=0.353 Sum_probs=115.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|+.|||||||+++++.+.+.+.+.++ +..+ ...+..++..+.+.+||++|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999999887765554 3334 46678888889999999999965 35678899999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCc--CcccCCHHHHhhhcCCC-CCCeeeccccccc
Q 031263 91 DITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLL--DARKVTAEARSTSLCPG-KWPILYGNLCKNS 158 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~ 158 (162)
|+++++||+.+..|+..+..... +++|+++||||.|+. ..+.++.+++++.+... .|.++++|+..+.
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 145 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGL 145 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 99999999999999999987754 678999999999984 46778888877776554 4778777655543
No 81
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=5.8e-29 Score=176.07 Aligned_cols=152 Identities=34% Similarity=0.535 Sum_probs=127.0
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 84 (162)
.+.+..+||+++|.++||||||+++|+++.+. .+.++.+.++....+..++..+.+.+|||||++++..++..+++.+|
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 45567899999999999999999999998874 46788888877777878888899999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHH-HHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 85 AAIIVYDITNQASFERAKK-WVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
++++|||++++++|+.+.. |...+.... ..+.|+++|+||+|+...+.+..++........+++++++|+..+
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~ 162 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTR 162 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 9999999999999999975 766665543 356899999999999877777777777666666666666665544
No 82
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=5.2e-29 Score=170.50 Aligned_cols=148 Identities=36% Similarity=0.640 Sum_probs=125.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|++++|||||++++.++.+...+.++.+.++..+.+..++..+.+.+||+||++.+..++..+++.+++++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988878888888887888888888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhCC----CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCC-CCeeeccccccc
Q 031263 91 DITNQASFERAKKWVQELQAQGN----PNMVMALAGNKADLLDARKVTAEARSTSLCPGK-WPILYGNLCKNS 158 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~----~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~ 158 (162)
|++++.+++.+..|...+..... .++|+++|+||+|+..++....++.+..+...+ .+++++|+.++.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 153 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAI 153 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCC
Confidence 99999999999999888766432 379999999999998666666677666655555 567776665543
No 83
>PLN00023 GTP-binding protein; Provisional
Probab=99.97 E-value=2.6e-29 Score=184.75 Aligned_cols=141 Identities=27% Similarity=0.432 Sum_probs=121.1
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEEC-------------CeEEEEEEEeCCCccccc
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-------------DATVKFEIWDTAGQERYH 73 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~g~~~~~ 73 (162)
....+||+++|+.+||||||+++|.++.+...+.+|++.++..+.+.++ +..+.++|||++|+++|.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 4466999999999999999999999999988889999998877777654 246889999999999999
Q ss_pred cchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCC------------CCCeEEEEEeCCCCcCcc---c---CCH
Q 031263 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN------------PNMVMALAGNKADLLDAR---K---VTA 135 (162)
Q Consensus 74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piiiv~nK~D~~~~~---~---~~~ 135 (162)
.++..++++++++|+|||++++.+|+.+..|+..+..... .++|++|||||+|+...+ . +..
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~ 177 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV 177 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence 9999999999999999999999999999999999987631 358999999999996543 2 357
Q ss_pred HHHhhhcCCCCC
Q 031263 136 EARSTSLCPGKW 147 (162)
Q Consensus 136 ~~~~~~~~~~~~ 147 (162)
+++++++..+++
T Consensus 178 e~a~~~A~~~g~ 189 (334)
T PLN00023 178 DAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHcCC
Confidence 788888776554
No 84
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=3.2e-29 Score=175.19 Aligned_cols=146 Identities=21% Similarity=0.324 Sum_probs=116.3
Q ss_pred ceEEEEEcCCCCCHHHHHH-HHHhCC-----CCCCCccceee-EEEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 031263 10 NAKLVLLGDVGAGKSSLVL-RFVKGQ-----FIEFQESTIGA-AFFSQT--------LAVNDATVKFEIWDTAGQERYHS 74 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~-~~~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~D~~g~~~~~~ 74 (162)
.+||+++|+.+||||||+. ++.++. +...+.||++. +..... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 565443 34556788752 322222 24678889999999999975 3
Q ss_pred chhhhhcCCcEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcC-------------------cccCC
Q 031263 75 LAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD-------------------ARKVT 134 (162)
Q Consensus 75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~-------------------~~~~~ 134 (162)
+...+++++|++++|||++++.||+.+. .|+..+.... +++|+++||||+|+.. .+.++
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 5567899999999999999999999997 6999987764 6789999999999864 47889
Q ss_pred HHHHhhhcCCCCCCeeeccccccc
Q 031263 135 AEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
.++++..+...+++++++|+..+.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~ 182 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQF 182 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCC
Confidence 999999988888877777766554
No 85
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=9.8e-29 Score=167.61 Aligned_cols=147 Identities=39% Similarity=0.628 Sum_probs=126.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888778888888877777777888899999999999999989999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 91 DITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|++++.+|+.+..|+..+..+. .+++|+++|+||+|+. .+.+..++........+++++++|+.++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRD 148 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCC
Confidence 9999999999999999998764 3689999999999996 34455566666666677787777776654
No 86
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=5.4e-29 Score=170.97 Aligned_cols=144 Identities=31% Similarity=0.467 Sum_probs=118.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEEC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDI 92 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 92 (162)
|+++|+++||||||++++.++.+...+.++....+ ...+..++..+.+.+|||+|++++..++..+++.+|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999999887878876554 45666788889999999999999999999999999999999999
Q ss_pred CChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCc------------ccCCHHHHhhhcCCCCC-Ceeeccccccc
Q 031263 93 TNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEARSTSLCPGKW-PILYGNLCKNS 158 (162)
Q Consensus 93 ~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 158 (162)
++++||+.+. .|+..+.... ++.|+++||||+|+... +.++.++++..+...+. +++++ |++++
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~-Sa~~~ 157 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLEC-SALTQ 157 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEe-cCCCC
Confidence 9999999986 6999887763 68999999999999653 23666666666666665 55555 44444
Q ss_pred c
Q 031263 159 N 159 (162)
Q Consensus 159 ~ 159 (162)
.
T Consensus 158 ~ 158 (174)
T smart00174 158 E 158 (174)
T ss_pred C
Confidence 3
No 87
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=2.8e-29 Score=171.10 Aligned_cols=145 Identities=29% Similarity=0.438 Sum_probs=120.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc-cccchhhhhcCCcEEEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~~i~v~ 90 (162)
||+++|++++|||||+++++++.+...+.++.+..+ ......++..+.+.+||+||+.. .......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999999888776777765444 45566788889999999999985 3455677899999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 91 DITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
|++++++|+.+..|+..+.... ..++|+++|+||+|+...+.+..+++.......+.+++++|+.++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 148 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAED 148 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCC
Confidence 9999999999999999887753 358999999999999777778887777777666777777777665
No 88
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=1.1e-28 Score=166.11 Aligned_cols=147 Identities=47% Similarity=0.746 Sum_probs=131.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++.+|++++||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999999888889998888888888888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
|++++++++.+..|+..+........|+++++||+|+..+.....++.+.......++++++|+..+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 147 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTG 147 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCC
Confidence 9999999999999999998886678999999999999766777778888777777778777766554
No 89
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=7.9e-29 Score=170.26 Aligned_cols=145 Identities=25% Similarity=0.421 Sum_probs=120.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+|++++|++++|||||++++.++.+...+.++.. +.....+..++....+++||++|++++..++..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999999998887777764 444556778888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcC------------cccCCHHHHhhhcCCCCC-Ceeeccccc
Q 031263 91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEARSTSLCPGKW-PILYGNLCK 156 (162)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~ 156 (162)
|++++++|+.+. .|+..+... .++.|+++++||+|+.. .+.+..++++.++...+. +++++|+..
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999985 799888764 35789999999999853 456777777777665554 566655544
Q ss_pred c
Q 031263 157 N 157 (162)
Q Consensus 157 ~ 157 (162)
+
T Consensus 159 ~ 159 (173)
T cd04130 159 Q 159 (173)
T ss_pred C
Confidence 4
No 90
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=9.1e-29 Score=176.14 Aligned_cols=146 Identities=23% Similarity=0.331 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhc-CCcEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR-GAAAAII 88 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~~~~~i~ 88 (162)
+||+++|++|||||||+++|.++.+. ..+.++.+.++..+.+.+++....+.+||++|++ ......+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 6666777656777788888888999999999997 333445566 8999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.+..++++......+++++++|+..+.
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~ 149 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQH 149 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCC
Confidence 999999999999999999987754 3689999999999998888888777776666667777776665553
No 91
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.96 E-value=1.9e-28 Score=167.56 Aligned_cols=147 Identities=30% Similarity=0.480 Sum_probs=122.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
.+||+++|.+|+|||||++++.++.+...+.++.+..+ .+.+..++....+.+||+||+++|..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 36899999999999999999999998877788877544 56677888889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCC-CCeeecccccc
Q 031263 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGK-WPILYGNLCKN 157 (162)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~ 157 (162)
||++++++++.+..|...+.+.. ..+.|+++++||.|+...+.+..++........+ .+++++|+.++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 149 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKR 149 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCC
Confidence 99999999999999999887643 3689999999999998777777666655444333 45666555444
No 92
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.96 E-value=1.9e-28 Score=168.27 Aligned_cols=147 Identities=28% Similarity=0.418 Sum_probs=119.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|++++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..++++++++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999999877777776443 445667888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCc------------ccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
|++++.+|+.+. .|+..+... .++.|+++++||+|+.+. +.++.++++..+...++..++..|+++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999986 688888766 578999999999998543 356666676666666664344444444
Q ss_pred cc
Q 031263 158 SN 159 (162)
Q Consensus 158 ~~ 159 (162)
+.
T Consensus 159 ~~ 160 (174)
T cd04135 159 QK 160 (174)
T ss_pred CC
Confidence 43
No 93
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=5.4e-29 Score=169.84 Aligned_cols=140 Identities=22% Similarity=0.316 Sum_probs=113.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 91 (162)
.|+++|+++||||||++++.++.+...+.++.+.+. ...+...+.+.+||++|++++..++..+++++|++++|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999999888877888887543 2234456899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCH----HHHhhhcCCCCCCeeeccccc
Q 031263 92 ITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA----EARSTSLCPGKWPILYGNLCK 156 (162)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~ 156 (162)
.+++.+|...+.|+..+.... +++|+++|+||+|+...+.++. .++.......+|+++++|+..
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~ 144 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDD 144 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecC
Confidence 999999999999998886653 6899999999999977665443 122333455678777766554
No 94
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=2.3e-28 Score=170.44 Aligned_cols=148 Identities=32% Similarity=0.513 Sum_probs=133.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
..+||+++|.+|+|||+|..+|+.+.|...|.||++ +.+.+.+.+++....+.++||+|++++..+...++++.+++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999997 5668888899999999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 89 VYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
||+++|+.||+.+..++..+.+ .....+|+++||||+|+...|.++.++++.......++++++|+..+
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLN 150 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCC
Confidence 9999999999999999999955 33467899999999999999999999999888877778666666555
No 95
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.4e-30 Score=165.96 Aligned_cols=145 Identities=35% Similarity=0.617 Sum_probs=134.1
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEEC
Q 031263 14 VLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDI 92 (162)
Q Consensus 14 ~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 92 (162)
+++|++.+|||+|+-||..+.|. ....++.|+++..+.++.++..+++++|||+|+++|+.....|++++|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 47899999999999999888776 45679999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 93 TNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 93 ~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+++.||+..+.|+.++..+....+.+.++|||+|+..+|.+..++.+...+..+.|+.++|+.+.-
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~ 146 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGF 146 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccc
Confidence 999999999999999999988889999999999999899999999999999899998887776543
No 96
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=8.7e-28 Score=164.48 Aligned_cols=143 Identities=24% Similarity=0.421 Sum_probs=110.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
.+.+||+++|++++|||||++++..+.+.. +.++.+.++. .... ..+.+++||++|+++++.++..+++++|+++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 346899999999999999999999877754 5677776543 2223 4588999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCcccCCHHHHhhhc-----CCCCCCeeecccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEARSTSL-----CPGKWPILYGNLCKN 157 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~ 157 (162)
+|||++++.+|++...|+..+... ..+++|++||+||+|+.+. +..++++..+ ....|+++++|+.++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g 155 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSG 155 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence 999999999999998887776543 2367899999999998643 4445555443 234466666555444
No 97
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=1.6e-27 Score=163.82 Aligned_cols=146 Identities=29% Similarity=0.477 Sum_probs=116.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
+.||+++|+++||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..++.++|++++|
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 46899999999999999999999999887888887655 34566788888999999999999998888889999999999
Q ss_pred EECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCc------------ccCCHHHHhhhcCCCCC-Ceeecccc
Q 031263 90 YDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEARSTSLCPGKW-PILYGNLC 155 (162)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 155 (162)
||++++++|+.+. .|+..+.+. .++.|+++|+||+|+... ..+...+.++.....++ +++++|+.
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999885 688888765 368899999999998543 23344555555554444 55655544
Q ss_pred cc
Q 031263 156 KN 157 (162)
Q Consensus 156 ~~ 157 (162)
++
T Consensus 159 ~~ 160 (175)
T cd01870 159 TK 160 (175)
T ss_pred cC
Confidence 43
No 98
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.96 E-value=3.3e-27 Score=160.23 Aligned_cols=147 Identities=28% Similarity=0.459 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|.+|+|||||++++.+..+...+.++.+..+ .+....++..+.+.+||++|+..+..++..+++.+++++++|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999998877777776544 555667888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 91 DITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|++++.+|..+..|+..+.... ..++|+++|+||+|+...+.....+.+......+.+++++|+.++.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQ 148 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCC
Confidence 9999999999999999887763 3589999999999997755566666666655556777777766553
No 99
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=3.1e-27 Score=159.65 Aligned_cols=146 Identities=33% Similarity=0.540 Sum_probs=123.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 91 (162)
||+++|++++|||||++++++..+...+.++.+ +........++..+.+++||+||+..+..++..+++.++++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 699999999999999999999887777777766 4456666677778899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 92 ITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
.++++++..+..|...+..... ..+|+++++||+|+...+.+..++++......+.+++++|+..+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 147 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNI 147 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCC
Confidence 9999999999999988877644 689999999999998777777788877777666677776665543
No 100
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.95 E-value=2.2e-27 Score=161.13 Aligned_cols=115 Identities=23% Similarity=0.454 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|.++||||||++++..+.+.. +.|+++.+.. .+.. ..+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 489999999999999999998888864 6788776542 2333 4588999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCc
Q 031263 91 DITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~ 130 (162)
|++++.+|.++..|+..+... ...+.|++|++||+|+.+.
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 999999999998887776543 2357899999999998653
No 101
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.95 E-value=1.4e-27 Score=164.44 Aligned_cols=118 Identities=25% Similarity=0.455 Sum_probs=99.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
+..+||+++|.+++|||||++++..+.+.. +.||++.++. .... ..+.+.+||++|++.+..++..+++++++++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 346999999999999999999998887753 6678776543 2333 3488999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~ 130 (162)
+|||+++++++++...|+..+... ..+++|++||+||+|+.+.
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 999999999999999888887553 2367899999999998654
No 102
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=3.4e-27 Score=163.37 Aligned_cols=119 Identities=22% Similarity=0.420 Sum_probs=99.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
+..+||+++|.++||||||++++..+++.. +.||.+.+.. .+.. ..+.+.+||+||+++++.++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 346899999999999999999999887764 6788876543 3333 4488999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCcc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~ 131 (162)
+|||+++++++.+...|+..+... ..+++|++|++||+|+.+..
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~ 134 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC
Confidence 999999999999888777776443 23679999999999986543
No 103
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=1.1e-26 Score=164.94 Aligned_cols=151 Identities=28% Similarity=0.457 Sum_probs=125.3
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 84 (162)
......+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|+..+..++..+++.++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 34556799999999999999999999999998888999999888887777888999999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
++++|||++++.+|..+..|+..+.... .++|+++++||+|+.+. .+..+. .......++.++++|+..+.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~~e~Sa~~~~ 154 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKARQ-ITFHRKKNLQYYDISAKSNY 154 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCHHH-HHHHHHcCCEEEEEeCCCCC
Confidence 9999999999999999999999988763 67899999999998543 333333 23344456777776665443
No 104
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.95 E-value=7.5e-27 Score=161.22 Aligned_cols=146 Identities=32% Similarity=0.443 Sum_probs=120.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
.||+++|.+|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||+.++...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6999999999999999999999988776777765544 455667777889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 91 DITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
|+++..+++.+..|+..+.... ..+.|+++++||+|+...+.+...+.+......+++++++|+..+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSAREN 148 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999988886643 367899999999999776666665555555555567777665443
No 105
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.95 E-value=1.3e-26 Score=161.19 Aligned_cols=147 Identities=29% Similarity=0.458 Sum_probs=116.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
+.||+++|++|+|||||++++..+.+.+.+.++....+ ...+..++....+.+||++|++.+......+++.+++++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 46999999999999999999998888877777766554 34556677788999999999998888877788999999999
Q ss_pred EECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcC----------cccCCHHHHhhhcCCCCC-Ceeecccccc
Q 031263 90 YDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD----------ARKVTAEARSTSLCPGKW-PILYGNLCKN 157 (162)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 157 (162)
||++++++|+.+. .|+..+.... +++|+++||||+|+.+ .+.+..+++.......+. +++++| +++
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S-a~~ 157 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECS-ALT 157 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEcc-CCC
Confidence 9999999999997 6999987764 5799999999999854 244555566655555554 455555 444
Q ss_pred cc
Q 031263 158 SN 159 (162)
Q Consensus 158 ~~ 159 (162)
+.
T Consensus 158 ~~ 159 (187)
T cd04129 158 GE 159 (187)
T ss_pred CC
Confidence 44
No 106
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=1.3e-26 Score=162.54 Aligned_cols=145 Identities=23% Similarity=0.392 Sum_probs=115.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 91 (162)
||+++|.+++|||||+++++++.+...+.++.. +.......+.+..+.+++||++|+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 699999999999999999999998876666664 3445566677777899999999999999898999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcC-cccCCHHHHhhhcC-CCCCCeeecccccc
Q 031263 92 ITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLD-ARKVTAEARSTSLC-PGKWPILYGNLCKN 157 (162)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~ 157 (162)
++++.+|+.+..|+..+..... .++|+++|+||+|+.. .+.+..+....... ....+++++|+.++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 148 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDN 148 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCC
Confidence 9999999999999998877643 5799999999999965 45555544443322 22335555544433
No 107
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.95 E-value=2.2e-26 Score=157.30 Aligned_cols=144 Identities=30% Similarity=0.514 Sum_probs=116.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|.+++|||||++++.++.+...+.++....+ ......++..+.+++||+||+.++......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999998776777775443 555667888899999999999998888888889999999999
Q ss_pred ECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCccc-----------CCHHHHhhhcCCCCC-Ceeeccccc
Q 031263 91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARK-----------VTAEARSTSLCPGKW-PILYGNLCK 156 (162)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~s~~~ 156 (162)
|++++.+|.... .|+..+.... ++.|+++|+||+|+..++. +..+++...+...++ +++++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALT 157 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCC
Confidence 999999998865 6888877764 5899999999999966553 345566666666666 556655443
No 108
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.95 E-value=2.1e-26 Score=158.24 Aligned_cols=145 Identities=23% Similarity=0.351 Sum_probs=112.0
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.+...+||+++|++++|||||++++.+..+. .+.++.+.. ...+..+ .+.+.+||+||++.++.++..+++++|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 3455699999999999999999999987553 456676643 3344444 4789999999999999899999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCcccCCHHHHhhhc-----CCCCCCeeecccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEARSTSL-----CPGKWPILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~ 157 (162)
+++|||++++.+|.....|+..+... ...+.|+++|+||+|+.+.. ..++.+..+ ....++++++|+.++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 160 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTG 160 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCC
Confidence 99999999999999998888887553 23689999999999996543 444444443 234667777766554
No 109
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=8.2e-27 Score=161.58 Aligned_cols=117 Identities=23% Similarity=0.450 Sum_probs=97.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
+..+||+++|+++||||||++++..+.+.. +.+|.+.++. .+.. ..+.+.+||++|++.++.++..+++++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346899999999999999999998887765 6677776543 3333 4488999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcC
Q 031263 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLD 129 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~ 129 (162)
+|||++++++|.....++..+... ...++|++||+||.|+.+
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 999999999999988777776443 235789999999999854
No 110
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.95 E-value=2.4e-26 Score=159.38 Aligned_cols=119 Identities=25% Similarity=0.410 Sum_probs=100.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
.+||+++|.++||||||++++....+.. +.++.+.+.....+.. ++..+.+.+||++|++++..++..+++.+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 5899999999999999999999988765 4677776655555543 4466899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcC
Q 031263 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLD 129 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~ 129 (162)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 999999999999988988876542 35789999999999864
No 111
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=2.4e-26 Score=157.14 Aligned_cols=116 Identities=22% Similarity=0.295 Sum_probs=98.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 91 (162)
+|+++|.++||||||++++.+. +...+.++.+.. ...+... ...+++||+||+..++.++..++++++++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 666677888765 3344443 4889999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCccc
Q 031263 92 ITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARK 132 (162)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~ 132 (162)
++++.++..+..|+..+.... ..++|+++|+||+|+.+.+.
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~ 117 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL 117 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC
Confidence 999999999999999887653 25789999999999976653
No 112
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.95 E-value=4.8e-26 Score=155.94 Aligned_cols=124 Identities=25% Similarity=0.452 Sum_probs=101.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 91 (162)
||+++|.++||||||++++.+..+.. +.+|.+.+.. .+.. ..+.+.+||+||+..+..++..+++++|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987654 6777776553 2333 45889999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhc
Q 031263 92 ITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSL 142 (162)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~ 142 (162)
++++++|.++..|+..+.+.. ..+.|++|++||+|+.+ .+..++.+..+
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~ 125 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELL 125 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHh
Confidence 999999999999988886542 35689999999999854 34555555444
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=4.3e-26 Score=155.68 Aligned_cols=119 Identities=29% Similarity=0.467 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|+++||||||++++.++.+...+.++. ..+ ......++..+.+.+||++|+.++...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999998876543322 222 333345667789999999999888888888889999999999
Q ss_pred ECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCccc
Q 031263 91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARK 132 (162)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~ 132 (162)
|++++.+|+.+. .|+..+.... +++|+++|+||+|+.+.+.
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccc
Confidence 999999999985 6888887764 5899999999999976554
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.94 E-value=5e-26 Score=154.28 Aligned_cols=115 Identities=21% Similarity=0.355 Sum_probs=95.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-CCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+|+++|+++||||||++++.+..+ ...+.++.+.... ... ...+.+.+||+||+.++..++..+++.++++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998764 4556677775432 222 34588999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCCcCc
Q 031263 91 DITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDA 130 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~~ 130 (162)
|++++.++..+..|+..+.... ..++|+++|+||+|+.+.
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 9999999999888888876532 257999999999998654
No 115
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.94 E-value=5.6e-27 Score=160.88 Aligned_cols=148 Identities=30% Similarity=0.474 Sum_probs=125.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
...+|++++|+..+|||+|+-.+..+.|+..|.||...++ +..+.+ +++.+.+.+|||+|+++|..++...|..+|.|
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3579999999999999999999999999999999998554 666778 49999999999999999999998899999999
Q ss_pred EEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCc------------ccCCHHHHhhhcCCCC-CCeeec
Q 031263 87 IIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEARSTSLCPGK-WPILYG 152 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 152 (162)
++||++.++.||+++. .|+.++.+++ +++|+++||+|.|+.+. ..++.++++......+ ..++++
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 9999999999999975 8999999996 99999999999999632 3555666665555544 445666
Q ss_pred ccccc
Q 031263 153 NLCKN 157 (162)
Q Consensus 153 s~~~~ 157 (162)
|+-..
T Consensus 160 Sa~tq 164 (198)
T KOG0393|consen 160 SALTQ 164 (198)
T ss_pred hhhhh
Confidence 65544
No 116
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.94 E-value=2e-28 Score=163.30 Aligned_cols=153 Identities=27% Similarity=0.478 Sum_probs=138.1
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
....-+|++++|..++||||+|+++..+-|...+..+++.++....+.+++..+.+.+||++|+++|..+...||+++.+
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 34566999999999999999999999999999999999999999988888888899999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNSN 159 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (162)
.++||+.+|+.||+...+|++.+.... ..+|.++|-||+|+.+..++...+.+......+..++.+|..+..|
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~N 168 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFN 168 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 999999999999999999999998874 7899999999999999999988888877776666777776655543
No 117
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.94 E-value=1.8e-25 Score=153.74 Aligned_cols=142 Identities=27% Similarity=0.411 Sum_probs=109.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
..+||+++|++++|||||++++..+.+.. +.++.+.+.. ....+ ...+.+||+||+..+...+..+++++|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999888775 5677776543 33333 4789999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhc-----CCCCCCeeecccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSL-----CPGKWPILYGNLCKN 157 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~ 157 (162)
|+|+++++++.....|+..+.... ..++|+++++||+|+.+. ...++..+.+ ....|+++++|+.++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCC
Confidence 999999999988888777765432 357899999999998653 2333322222 345566777666554
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.94 E-value=2.9e-25 Score=150.43 Aligned_cols=141 Identities=22% Similarity=0.390 Sum_probs=106.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 91 (162)
+|+++|++++|||||++++.++.+.. +.++.+.++ ..+.. +....+.+||++|+..+...+..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999988764 456666543 33333 345789999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhh------cCCCCCCeeeccccccc
Q 031263 92 ITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTS------LCPGKWPILYGNLCKNS 158 (162)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~ 158 (162)
++++.++.....|+..+.+.. ..+.|+++|+||+|+.... ...+.... .....++++++|+.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGE 148 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCC
Confidence 999999999988888876542 2689999999999985432 22222222 22234566666665543
No 119
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.93 E-value=4.7e-25 Score=149.16 Aligned_cols=139 Identities=25% Similarity=0.436 Sum_probs=106.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 91 (162)
||+++|.+++|||||++++.+..+. .+.++.+.+. ..+... ...+.+||+||+..+...+..+++.++++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 6999999999999999999998743 3566666543 333333 4789999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhc-----CCCCCCeeecccccc
Q 031263 92 ITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSL-----CPGKWPILYGNLCKN 157 (162)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~ 157 (162)
+++++++.....|+..+.... ..+.|+++++||+|+...+ ..++....+ ....++++++|+-.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 145 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTG 145 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCC
Confidence 999999999998888876643 3689999999999997644 222333222 234556666655443
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.93 E-value=3.1e-25 Score=150.21 Aligned_cols=139 Identities=26% Similarity=0.406 Sum_probs=102.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 91 (162)
||+++|++++|||||++++..+.+.. +.++++.+.. .+.. ....+.+||+||+..++.++..+++.++++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998887754 5567665542 2333 44789999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCCCCcCcccCCHHHHhhh-----cCCCCCCeeecccccc
Q 031263 92 ITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEARSTS-----LCPGKWPILYGNLCKN 157 (162)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~ 157 (162)
++++.++.....|+..+.+ ....+.|+++|+||+|+.++.. ..+.... .....++++++|+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~~ 145 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS--EAEISEKLGLSELKDRTWSIFKTSAIKG 145 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC--HHHHHHHhCccccCCCcEEEEEeeccCC
Confidence 9999888877666655433 3335789999999999865432 2222211 2233456777655444
No 121
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=1.6e-24 Score=150.33 Aligned_cols=129 Identities=21% Similarity=0.334 Sum_probs=101.6
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
.++.+||+++|.+++|||||++++.++.+.. +.++.+.+. ..+... .+++.+||+||+..++..+..++.+++++
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~i 88 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGI 88 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 3567999999999999999999999886653 445555432 233333 37899999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCcccCCHHHHhhhc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEARSTSL 142 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~ 142 (162)
++|+|+++++++.....|+..+... ...+.|+++|+||+|+.. .++.++.+..+
T Consensus 89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l 143 (184)
T smart00178 89 VYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYAL 143 (184)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHc
Confidence 9999999999999988888877553 235789999999999854 34555555443
No 122
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.93 E-value=1.9e-24 Score=150.42 Aligned_cols=130 Identities=24% Similarity=0.380 Sum_probs=104.4
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
..+..||+++|++++|||||++++.+..+. .+.++.+... ..+..++ ..+.+||+||+.++...+..+++.++++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~i 90 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGI 90 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 356799999999999999999999988775 3566666543 3344444 7889999999999988889999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcC
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLC 143 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~ 143 (162)
++|+|++++.+|.....|+..+.... ..+.|+++++||+|+.+ .+..++.+..+.
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~ 146 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALG 146 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhC
Confidence 99999999999998888888876543 36799999999999854 455566655543
No 123
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.4e-25 Score=149.58 Aligned_cols=148 Identities=23% Similarity=0.389 Sum_probs=121.6
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
.+...+|+++|..++||||++.++..++.... .||+|.+ ...+... .+.|++||.+|++.++.+|+.|+...+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfn--VE~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFN--VETVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccc--eeEEEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 46679999999999999999999999998875 8888844 4554444 58999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCcccCCHHH---HhhhcCCCCCCeeecccccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEA---RSTSLCPGKWPILYGNLCKNSN 159 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~ 159 (162)
|+|+|.+|++++.+.++.+..+..+.. ...|+++++||.|+.++..+.+.. ....+..+.|.+..+++-+..+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 999999999999999888877777654 689999999999998766543333 3345567888877766655543
No 124
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.93 E-value=2e-24 Score=147.24 Aligned_cols=140 Identities=24% Similarity=0.317 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC------CCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQF------IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
+|+++|++|+|||||++++.+... ...+.++.+.++. .+..+ ...+.+||+||++.+..++..+++.+++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 689999999999999999986432 2234566665543 23333 4789999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcC-------CCCCCeeecccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLC-------PGKWPILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-------~~~~~~~~~s~~~~ 157 (162)
+++|+|+++++++.....|+..+.+.. ..++|+++++||+|+... ....+.+..+. ...++++++|+.++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999999998888888876642 367999999999998553 33333333332 23456666555544
No 125
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.93 E-value=2.5e-24 Score=148.24 Aligned_cols=145 Identities=27% Similarity=0.441 Sum_probs=112.5
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
..++.+||+++|..++||||+++++..+.... ..||.|.+ ...+...+ +.+.+||.+|+..++..|..++.++++
T Consensus 10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~ 84 (175)
T PF00025_consen 10 SKKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADG 84 (175)
T ss_dssp TTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred ccCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccce
Confidence 34778999999999999999999999875543 66777754 44455555 789999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCcccCCHHHHhhh-----cC-CCCCCeeecccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEARSTS-----LC-PGKWPILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~-----~~-~~~~~~~~~s~~~~ 157 (162)
+|+|+|.+|++.+.+....+..+... ...++|++|++||+|+.+. ...++.+.. +. .+.|.++.+|+.++
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTG 161 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTT
T ss_pred eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCC
Confidence 99999999999999988877776654 3368999999999998654 333443322 22 45666666555443
No 126
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.92 E-value=3.3e-24 Score=138.63 Aligned_cols=114 Identities=33% Similarity=0.637 Sum_probs=89.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFI--EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
||+|+|..|+|||||+++|.+..+. ..+.+..+.+..............+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 12223333344455666677777799999999999888888889999999999
Q ss_pred EECCChHHHHHHH---HHHHHHHHhCCCCCeEEEEEeCCC
Q 031263 90 YDITNQASFERAK---KWVQELQAQGNPNMVMALAGNKAD 126 (162)
Q Consensus 90 ~d~~~~~s~~~~~---~~~~~~~~~~~~~~piiiv~nK~D 126 (162)
||++++.||+.+. .|+..+... .+++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 9999999999975 456666654 36699999999998
No 127
>PTZ00099 rab6; Provisional
Probab=99.92 E-value=4e-24 Score=147.26 Aligned_cols=126 Identities=41% Similarity=0.626 Sum_probs=109.7
Q ss_pred CCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhC
Q 031263 33 GQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112 (162)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 112 (162)
+.|...+.+|++.++..+.+.+++..+++.+|||+|++++..++..+++++|++++|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45667788999999988888899999999999999999999999999999999999999999999999999999997765
Q ss_pred CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 113 NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 113 ~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
.+++|++|||||+|+...+.+..+++...+...++.++++|+.++.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~ 128 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGH 128 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 5789999999999998777788888877777777776666665553
No 128
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.92 E-value=4e-24 Score=140.66 Aligned_cols=147 Identities=20% Similarity=0.323 Sum_probs=114.3
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.+.+.++|+++|..|+|||+++++|.+... ....|+.+ |..+++.. +.+.+++||.+|+...+..|+.||..+|+
T Consensus 12 ~kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~g--f~Iktl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 12 LKEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLG--FQIKTLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred hhhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccc--eeeEEEEe--cceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 456789999999999999999999998763 33566666 34455444 44999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHH----HhhhcCCCCCCeeecccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEA----RSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~----~~~~~~~~~~~~~~~s~~~~ 157 (162)
+|+|||.+|+.+|++....+..+.... -...|+++++||.|+...-...... .+..++++.|+++-|+.-+.
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tg 163 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTG 163 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecccc
Confidence 999999999999998887776664432 3568999999999996432222111 22334889999998877654
No 129
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.92 E-value=1.3e-23 Score=141.28 Aligned_cols=141 Identities=26% Similarity=0.374 Sum_probs=107.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEEC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDI 92 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 92 (162)
|+++|++|+|||||++++.+.++...+.++.+.+.. .+.... ..+.+||+||+..+..++..+++.+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 799999999999999999999998888888876653 233333 7899999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhh---hcCCCCCCeeecccccc
Q 031263 93 TNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARST---SLCPGKWPILYGNLCKN 157 (162)
Q Consensus 93 ~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~ 157 (162)
+++.++.....|+..+.... ..++|+++|+||+|+.+........... ......++++++|+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 146 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEK 146 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccC
Confidence 99999988888877775532 3678999999999986544322111111 12223456666655544
No 130
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=1.6e-23 Score=148.72 Aligned_cols=122 Identities=42% Similarity=0.678 Sum_probs=109.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
.+||+++|++|+|||||+++|.++.+...+.++++..+...........+++.+||++|+++++.++..++.++++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999998999988887777776666688999999999999999999999999999999
Q ss_pred EECCC-hHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 90 YDITN-QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 90 ~d~~~-~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
+|.++ ..+++....|...+........|+++++||+|+...+
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 99999 5566667799999988865689999999999997664
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.91 E-value=2e-22 Score=135.08 Aligned_cols=147 Identities=28% Similarity=0.421 Sum_probs=113.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
.+||+++|.+|+|||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||+..+..++..+++.+++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999999997777778888887776677777678899999999999998988889999999999
Q ss_pred EECCCh-HHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 90 YDITNQ-ASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 90 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+|.... .++.... .|...+......+.|+++++||+|+...+ ...............+++++|+..+
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~ 149 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETG 149 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCC
Confidence 999887 6666655 77777766643488999999999997654 2323322222223445565554433
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.90 E-value=6.5e-23 Score=140.58 Aligned_cols=122 Identities=21% Similarity=0.345 Sum_probs=97.3
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 84 (162)
......+||+++|++|+|||||++++.+..+.. +.++.+.+. ..+..++ ..+.+||++|+..+...+..+++.++
T Consensus 9 ~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~ 83 (173)
T cd04155 9 RKSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTD 83 (173)
T ss_pred hccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCC
Confidence 344568999999999999999999999876643 456666443 3344444 67899999999988888888899999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCcc
Q 031263 85 AAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~ 131 (162)
++++|+|+++..++.....|+..+... ...++|+++++||+|+.+..
T Consensus 84 ~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (173)
T cd04155 84 CLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA 131 (173)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC
Confidence 999999999998998888777666543 23579999999999986543
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.89 E-value=1.5e-22 Score=139.46 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=85.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-------CCCCCcc------ceeeEEEEEEEEE-----CCeEEEEEEEeCCCccccc
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ-------FIEFQES------TIGAAFFSQTLAV-----NDATVKFEIWDTAGQERYH 73 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~~~~ 73 (162)
+|+++|..++|||||+++|++.. +...+.+ +.+.++....... ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999999742 1111222 1233333333222 5667889999999999999
Q ss_pred cchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
..+..+++.+|++++|||++++.++.....|.... ..++|+++|+||+|+.+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPS 133 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCc
Confidence 99999999999999999999876666666664332 24678999999999864
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.89 E-value=2.5e-22 Score=137.14 Aligned_cols=144 Identities=19% Similarity=0.112 Sum_probs=93.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcc----ccccchhhh---hcCCc
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----RYHSLAPMY---YRGAA 84 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~---~~~~~ 84 (162)
+|+++|.+++|||||++++.+........+..+.+.....+...+ ...+.+|||||.. ....+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999997654211111111111112222222 2478999999963 222333333 44599
Q ss_pred EEEEEEECCCh-HHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCcccCCHHHHhhhcCC-CCCCeeecccccc
Q 031263 85 AAIIVYDITNQ-ASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEARSTSLCP-GKWPILYGNLCKN 157 (162)
Q Consensus 85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~ 157 (162)
++++|+|++++ ++++.+..|++.+..... .+.|+++|+||+|+.+...+.. ........ ...+++.+|+..+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~ 156 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFE-LLKELLKELWGKPVFPISALTG 156 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHH-HHHHHHhhCCCCCEEEEecCCC
Confidence 99999999998 789999999998877632 4789999999999866554432 23333333 2455666555443
No 135
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.89 E-value=3.5e-22 Score=136.26 Aligned_cols=142 Identities=18% Similarity=0.161 Sum_probs=92.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc---------chhhhhcC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---------LAPMYYRG 82 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~~~ 82 (162)
+|+++|.+++|||||++++.+..+.....+..+.+...... ......+.+|||||+..... ........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 79999999999999999999987643222211112222222 22357899999999742110 00011123
Q ss_pred CcEEEEEEECCChHHH--HHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 83 AAAAIIVYDITNQASF--ERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 83 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+|++++|+|++++.++ +....|+..+.... .+.|+++++||+|+.+.+.+.. .+.......++++++|+.++.
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEE 154 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccC
Confidence 6899999999987653 55567888776543 5789999999999976554433 333344456777776665543
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.89 E-value=3.8e-22 Score=140.45 Aligned_cols=144 Identities=21% Similarity=0.165 Sum_probs=98.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------ccchhh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---------HSLAPM 78 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~ 78 (162)
+..++|+++|.+|||||||++++.+..+.....+..+.+.....+...+. ..+.+|||||.... ... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence 44589999999999999999999998654322222222223333433332 37899999997321 111 12
Q ss_pred hhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
.+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+....... ........+++++|+.++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence 25679999999999999888888888887776655678999999999986544322 2233445677776665543
No 137
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.89 E-value=2.3e-22 Score=140.57 Aligned_cols=143 Identities=20% Similarity=0.276 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh--CCCCCCC------------ccceeeEEEEEEEEECCeEEEEEEEeCCCccccccch
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVK--GQFIEFQ------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA 76 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 76 (162)
.+|+++|.+++|||||+++|++ +.+...+ .++.+.++......+.+....+.+|||||+.+|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999997 4444322 1234444444545555566899999999999999999
Q ss_pred hhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCC-HHHHhhhc-------CCCCCC
Q 031263 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT-AEARSTSL-------CPGKWP 148 (162)
Q Consensus 77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~-~~~~~~~~-------~~~~~~ 148 (162)
..+++.+|++++|||+++.. +.....|+..+.. .++|+++++||+|+...+... .++....+ ...+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2333344444433 367899999999996543321 22223322 234677
Q ss_pred eeecccccc
Q 031263 149 ILYGNLCKN 157 (162)
Q Consensus 149 ~~~~s~~~~ 157 (162)
++++|+.++
T Consensus 159 iv~~Sa~~g 167 (194)
T cd01891 159 VLYASAKNG 167 (194)
T ss_pred EEEeehhcc
Confidence 777766554
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.88 E-value=1e-21 Score=133.13 Aligned_cols=139 Identities=17% Similarity=0.129 Sum_probs=90.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC---CCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ---FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
.|+++|.+++|||||++++.+.. +...+.++.+.+.....+.... ...+.+|||||++++......++..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 58999999999999999999642 3222333344444444444432 3689999999999887666677889999999
Q ss_pred EEECCC---hHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCccc--CCHHHHhhhcCC---CCCCeeecccccc
Q 031263 89 VYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEARSTSLCP---GKWPILYGNLCKN 157 (162)
Q Consensus 89 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~s~~~~ 157 (162)
|+|+++ +.+++.+ ..+... ...|+++++||+|+..... ...++..+.+.. ..++++++|+...
T Consensus 81 V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (164)
T cd04171 81 VVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTG 151 (164)
T ss_pred EEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCC
Confidence 999987 3333322 222222 2248999999999965421 112333333332 3567777666554
No 139
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.88 E-value=2.2e-21 Score=126.55 Aligned_cols=147 Identities=20% Similarity=0.279 Sum_probs=121.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC--CCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccc-ccchhhhhcCCcE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI--EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-HSLAPMYYRGAAA 85 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~~~~~~~~~~~ 85 (162)
+--||+++|..++|||+++.+++-++.. ..+.+|+...+.....+..+..-.+.++||.|.+.+ ..+.+.|+.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 4579999999999999999999977655 345677776665555555666678999999998877 5677889999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLC 155 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 155 (162)
+++||+..|++||..+..+...|.... .+.+||++++||+|+.+++.+...-+..++...+...++++..
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~ 158 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAM 158 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEec
Confidence 999999999999998876666666543 3689999999999999999999999999998888877776653
No 140
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1.7e-21 Score=145.94 Aligned_cols=147 Identities=20% Similarity=0.104 Sum_probs=100.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc----cccchh---hhhcC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAP---MYYRG 82 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~---~~~~~ 82 (162)
...|+++|.++||||||++++.+.+......+..+.......+... ....+.+||+||.-+ ...+.. ..++.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 3578999999999999999999876442222222222222233332 235689999999632 112322 34567
Q ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 83 AAAAIIVYDITNQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 83 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
++++++|+|++++++++.+..|...+..+.. .+.|+++|+||+|+.....+..+..+.++....++++++|+.+.
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg 313 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTG 313 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 9999999999988789999999999987643 47899999999999765544444444444444577777766554
No 141
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.88 E-value=1e-21 Score=126.56 Aligned_cols=146 Identities=24% Similarity=0.318 Sum_probs=118.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
.+.+||+++|..++|||||++++.+..... ..||.|. ..+.+..++ .+++++||.+|+...+..|..||.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~h-ltpT~GF--n~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH-LTPTNGF--NTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhh-ccccCCc--ceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence 567999999999999999999999876544 5567764 455554543 578999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhh---hcCCCCCCeeecccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARST---SLCPGKWPILYGNLCKN 157 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~ 157 (162)
+|+|.+|+..|+++.+-+-++.... -..+|++|..||.|+..+..+++.+.+. .+..+.|++..++.-++
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~ 164 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSL 164 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccc
Confidence 9999999999999886666665543 3789999999999998777776666553 34567888888877654
No 142
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.87 E-value=6.5e-21 Score=126.50 Aligned_cols=142 Identities=41% Similarity=0.668 Sum_probs=107.9
Q ss_pred EEcCCCCCHHHHHHHHHhCCC-CCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECC
Q 031263 15 LLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT 93 (162)
Q Consensus 15 viG~~~~GKssli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 93 (162)
++|.+++|||||++++.+... .....++. .+..............+.+||++|...+...+..+++.++++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999877 44444555 6666666666677889999999999888888888899999999999999
Q ss_pred ChHHHHHHHHHHH-HHHHhCCCCCeEEEEEeCCCCcCcccCCHHH-HhhhcCCCCCCeeecccccc
Q 031263 94 NQASFERAKKWVQ-ELQAQGNPNMVMALAGNKADLLDARKVTAEA-RSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 94 ~~~s~~~~~~~~~-~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~ 157 (162)
++.++.....|.. .+.......+|+++++||+|+.......... .........++++.+|+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 145 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTG 145 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCC
Confidence 9999998888732 2333345789999999999997655444332 23333445667777666544
No 143
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.9e-21 Score=124.29 Aligned_cols=139 Identities=25% Similarity=0.441 Sum_probs=108.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
.+..+|+++|..++||||++..+.-+.... ..||.|. ..+.+. ++.+.|.+||.+|++..+..|..||.+..++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ipTvGF--nvetVt--ykN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGF--NVETVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcc-cccccce--eEEEEE--eeeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 347899999999999999999999776543 5677773 345444 45599999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCCCCcCcccCCHHHHhhh-----cCCCCCCeeecc
Q 031263 88 IVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEARSTS-----LCPGKWPILYGN 153 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s 153 (162)
||+|..+++.+++.+.-+..+.. ......|+++.+||.|+.+++.+ +++.++ +....|....++
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~p--qei~d~leLe~~r~~~W~vqp~~ 159 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKP--QEIQDKLELERIRDRNWYVQPSC 159 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCH--HHHHHHhccccccCCccEeeccc
Confidence 99999999999888765555544 33478999999999999776654 444433 345667555543
No 144
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.87 E-value=3.7e-22 Score=132.77 Aligned_cols=123 Identities=21% Similarity=0.236 Sum_probs=84.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcc-----ccccchhhhhcCCcEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE-----RYHSLAPMYYRGAAAA 86 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~~~ 86 (162)
||+++|+++||||||++++.+..+. +.++.+.++ .. .+|||||+. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------ND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------cC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999987652 334443332 11 689999973 2333323 47899999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCC-Ceeecccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKW-PILYGNLCKN 157 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 157 (162)
++|||++++.++.. ..|...+ ..|+++|+||+|+.+ +....++.+.++...+. +++++|+.++
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 130 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDE 130 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCC
Confidence 99999999988754 3454322 238999999999864 33444555555554454 5666665544
No 145
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=3.9e-21 Score=135.26 Aligned_cols=119 Identities=18% Similarity=0.306 Sum_probs=91.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC-cEEEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA-AAAIIVY 90 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-~~~i~v~ 90 (162)
+|+++|++++|||+|+++|.++.+...+.++ ..+..............+.+||+||+.+++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998877654333 3333222222223457799999999999998888889998 9999999
Q ss_pred ECCCh-HHHHHHHHHHHHHHHh---CCCCCeEEEEEeCCCCcCcc
Q 031263 91 DITNQ-ASFERAKKWVQELQAQ---GNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 91 d~~~~-~s~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~~~~ 131 (162)
|+++. .++.....|+..+... ..+.+|+++++||+|+....
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 99997 6777777776655332 23689999999999986543
No 146
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.87 E-value=5.3e-21 Score=130.27 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=84.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
.|+++|.+++|||||++++..+.+...+.++.+.+.....+... +....+.+|||||+..+..++...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999988776544444444433344333 23578999999999999888888899999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
|+++...-. ....+..+.. .+.|+++|+||+|+...
T Consensus 82 d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNA 117 (168)
T ss_pred ECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccc
Confidence 999743211 1112222222 46799999999998643
No 147
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.87 E-value=1.5e-22 Score=131.15 Aligned_cols=142 Identities=25% Similarity=0.379 Sum_probs=112.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
....+.++|..++|||||+|....+.+...-.|+.|.+. .. ++...+.+.+||.||+.+|+.+|..|+++++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm--rk--~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM--RK--VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhccccccee--EE--eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 357899999999999999999999888877788888553 32 33345889999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCcccCCHHHHh-----hhcCCCCCCeeeccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEARS-----TSLCPGKWPILYGNLCK 156 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~ 156 (162)
++|++|++.++..++-+..+... .-..+|+++.|||.|+.++- ..++.. ..+..+..++|..|+..
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL--~~~~li~rmgL~sitdREvcC~siScke 166 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL--SKIALIERMGLSSITDREVCCFSISCKE 166 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc--cHHHHHHHhCccccccceEEEEEEEEcC
Confidence 99999999988887666665544 34789999999999986543 333322 34456777788765543
No 148
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.86 E-value=1.8e-21 Score=127.27 Aligned_cols=151 Identities=22% Similarity=0.460 Sum_probs=129.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
.-.+||-++|++..|||||+-.+.++++.+.+..+.|.++..+.+.+.+..+.+.+||.+|++++..+.+...+++-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 34599999999999999999999999999888999999999999999999999999999999999999998899999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCH-----HHHhhhcCCCCCCeeecccccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA-----EARSTSLCPGKWPILYGNLCKNSN 159 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~-----~~~~~~~~~~~~~~~~~s~~~~~~ 159 (162)
|+||.+.++++..+.+|+...+......+|+ +||+|.|..-.-+.+. ..++.+++...-+.+++|.+.+.|
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 9999999999999999999988775555664 6799999833222222 234566666777899999998876
No 149
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.85 E-value=1.4e-20 Score=126.95 Aligned_cols=135 Identities=16% Similarity=0.088 Sum_probs=93.5
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc------chhhhhc--CCcEE
Q 031263 15 LLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LAPMYYR--GAAAA 86 (162)
Q Consensus 15 viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~--~~~~~ 86 (162)
++|.+++|||||++++.+..+.....+..+.+.....+..++ ..+.+|||||+..+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998875544455555555555565655 5789999999877664 3455564 89999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
++|+|++++++. ..|...+.. .++|+++++||+|+.+.+.+... .+......+++++++|+..+.
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~ 143 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGE 143 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCC
Confidence 999999986442 234444433 36799999999999765544433 223333345677776665543
No 150
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.85 E-value=1.9e-20 Score=141.25 Aligned_cols=120 Identities=22% Similarity=0.185 Sum_probs=87.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcc---------ccccchhhh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE---------RYHSLAPMY 79 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~ 79 (162)
..++|+++|.+|+|||||+|++.+........+..+.+.....+...+ ...+.+|||+|.. .|... ...
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~t-le~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRAT-LEE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHH-HHH
Confidence 348999999999999999999999875432222222334455555532 2578999999972 12221 124
Q ss_pred hcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
+..+|++++|+|++++.+++.+..|...+......+.|+++|+||+|+...
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE 316 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh
Confidence 778999999999999988888877777776655467899999999998653
No 151
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.85 E-value=1.8e-20 Score=128.51 Aligned_cols=142 Identities=18% Similarity=0.072 Sum_probs=93.2
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc----cccch---hhhhcCCcEEE
Q 031263 15 LLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLA---PMYYRGAAAAI 87 (162)
Q Consensus 15 viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~---~~~~~~~~~~i 87 (162)
++|++|||||||++++.+........+..+.+.....+..+ ....+.+||+||... ...+. ...++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 58999999999999999986521111111122222233333 146789999999632 22222 23467899999
Q ss_pred EEEECCCh------HHHHHHHHHHHHHHHhCC-------CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccc
Q 031263 88 IVYDITNQ------ASFERAKKWVQELQAQGN-------PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNL 154 (162)
Q Consensus 88 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 154 (162)
+|+|++++ .++.+...|...+..... .+.|+++|+||+|+...+................+++.+|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999988 578888888888765432 47899999999999766554443233334444566776655
Q ss_pred ccc
Q 031263 155 CKN 157 (162)
Q Consensus 155 ~~~ 157 (162)
...
T Consensus 160 ~~~ 162 (176)
T cd01881 160 KTE 162 (176)
T ss_pred hhh
Confidence 433
No 152
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.85 E-value=6.1e-20 Score=142.13 Aligned_cols=116 Identities=21% Similarity=0.204 Sum_probs=87.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APM 78 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~ 78 (162)
+..+||+++|.+|+|||||+|++++.... ....+..+.+.....+..++ ..+.+|||||..++... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 35689999999999999999999987542 22334555666666676766 56789999998654432 235
Q ss_pred hhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
+++.+|++++|||++++.+++.. |+..+.. .+.|+++|+||+|+...
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc
Confidence 67889999999999998777654 6665532 46799999999998643
No 153
>PRK04213 GTP-binding protein; Provisional
Probab=99.84 E-value=7e-21 Score=133.67 Aligned_cols=116 Identities=21% Similarity=0.252 Sum_probs=75.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCC-----------ccccccch
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG-----------QERYHSLA 76 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~ 76 (162)
...++|+++|.+++|||||++++.+..+.....++.+ +........ .+.+||||| ++.++..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 4578999999999999999999998876544444443 333333222 589999999 45566555
Q ss_pred hhhhc----CCcEEEEEEECCChHHHHHHHHHHH--------H-HHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 77 PMYYR----GAAAAIIVYDITNQASFERAKKWVQ--------E-LQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 77 ~~~~~----~~~~~i~v~d~~~~~s~~~~~~~~~--------~-~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
..++. .++++++|+|.++...+ ...|.. . +......++|+++|+||+|+.+.+
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEI--IERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR 146 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCcccccc--ccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH
Confidence 55554 35678888887642211 012210 0 111112478999999999986544
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=6.5e-20 Score=143.59 Aligned_cols=144 Identities=20% Similarity=0.230 Sum_probs=95.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCcc----------ccccch-
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----------RYHSLA- 76 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~- 76 (162)
..+||+++|.+++|||||+|++++.... ....++.+.+.....+..++ ..+.+|||||.. .+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999998753 33445555555555666666 456799999952 222222
Q ss_pred hhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCccc--CCHHHHhhhcCCCCC-Ceeecc
Q 031263 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEARSTSLCPGKW-PILYGN 153 (162)
Q Consensus 77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~-~~~~~s 153 (162)
..+++.+|++++|+|++++.++..+. ++..+.. .+.|+++|+||+|+..... ...++....+....| ++++ .
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~-~ 362 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVN-I 362 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEE-E
Confidence 23578899999999999987777653 4444433 4689999999999965321 112233333343344 4555 4
Q ss_pred cccccc
Q 031263 154 LCKNSN 159 (162)
Q Consensus 154 ~~~~~~ 159 (162)
|++++.
T Consensus 363 SAk~g~ 368 (472)
T PRK03003 363 SAKTGR 368 (472)
T ss_pred ECCCCC
Confidence 555444
No 155
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=5.7e-20 Score=123.86 Aligned_cols=128 Identities=32% Similarity=0.618 Sum_probs=112.8
Q ss_pred CCCCCCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhh
Q 031263 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 80 (162)
Q Consensus 1 m~~~~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 80 (162)
|..++.....+|++++|+.+.|||+++++.+.++|...+.+++|.+...-...-+...++|..|||+|++.+......++
T Consensus 1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy 80 (216)
T KOG0096|consen 1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY 80 (216)
T ss_pred CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence 66666556789999999999999999999999999999999999987666554444569999999999999999999998
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
-.....+++||++.+-.+.++..|...+.+-+ .++||++.|||.|...
T Consensus 81 I~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 81 IQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKA 128 (216)
T ss_pred EecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccc
Confidence 88999999999999999999999999988765 5699999999999743
No 156
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.83 E-value=1.2e-19 Score=135.81 Aligned_cols=146 Identities=20% Similarity=0.105 Sum_probs=95.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc----cccchhhh---hcC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPMY---YRG 82 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~~ 82 (162)
...|+++|.++||||||++++.+........+..+.......+..++ ...+.+||+||..+ ...+...+ +..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 36799999999999999999998764322222111211222233322 36789999999632 12233333 456
Q ss_pred CcEEEEEEECCCh---HHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 83 AAAAIIVYDITNQ---ASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 83 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
++++++|+|+++. ++++.+..|...+..+.. .+.|+++|+||+|+..+... .+..+.......++++++|+.++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~-~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEEL-AELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHH-HHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999986 678888888888876532 47899999999999665332 22222233334567777766554
No 157
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.83 E-value=1.3e-19 Score=125.09 Aligned_cols=146 Identities=17% Similarity=0.204 Sum_probs=91.4
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcc----------ccccc
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----------RYHSL 75 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~ 75 (162)
.+....+|+++|.+++|||||+|++.+..+.....++.+.+........++ .+.+||+||.. .+..+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 346779999999999999999999998864433444444333333222332 68999999942 23333
Q ss_pred hhhhhcC---CcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCccc--CCHHHHhhhcCCCC--CC
Q 031263 76 APMYYRG---AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEARSTSLCPGK--WP 148 (162)
Q Consensus 76 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~ 148 (162)
...+++. ++++++|+|++++-+.... .++..+.. .+.|+++++||+|+..... ...++.+..+...+ ++
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 3445543 5799999999875443333 22233322 3678999999999864432 22344445555443 46
Q ss_pred eeeccccccc
Q 031263 149 ILYGNLCKNS 158 (162)
Q Consensus 149 ~~~~s~~~~~ 158 (162)
++.+|+-++.
T Consensus 167 v~~~Sa~~g~ 176 (179)
T TIGR03598 167 VQLFSSLKKT 176 (179)
T ss_pred eEEEECCCCC
Confidence 7766655543
No 158
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.83 E-value=1.3e-19 Score=140.80 Aligned_cols=115 Identities=18% Similarity=0.183 Sum_probs=85.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------hhhh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APMY 79 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 79 (162)
..++|+++|.+++|||||+|++++.+.. ....+..+.++....+..++ ..+.+|||+|...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999987643 22334444455556666665 67899999998654432 2345
Q ss_pred hcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
++.+|++++|+|++++.+++....|.. ..+.|+++|+||+|+....
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~ 337 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEI 337 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccc
Confidence 788999999999999877776554433 3578999999999996543
No 159
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.82 E-value=5.8e-19 Score=118.62 Aligned_cols=132 Identities=18% Similarity=0.157 Sum_probs=89.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------hhhhhc
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APMYYR 81 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~ 81 (162)
++|+++|++|+|||||++++.+..... ...+..+.+........++ ..+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876432 2233333333334444443 67899999997554321 224567
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 82 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
.+|++++|+|++++.+......|.. ....|+++++||+|+...... .......+++++|+.++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~ 142 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTG 142 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCC
Confidence 8999999999998766655444322 357899999999998654433 22333456776665544
No 160
>PRK15494 era GTPase Era; Provisional
Probab=99.82 E-value=1.6e-19 Score=135.93 Aligned_cols=138 Identities=17% Similarity=0.230 Sum_probs=87.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCC---CCccceeeEEEEEEEEECCeEEEEEEEeCCCccc-cccchh------
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE---FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSLAP------ 77 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~------ 77 (162)
++.++|+++|.+|||||||+|+|++..+.. ....| .+.....+..++ .++.+|||||..+ +..+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tT--r~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTT--RSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCc--cCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHH
Confidence 456799999999999999999999987752 12222 223333444444 5789999999743 222222
Q ss_pred -hhhcCCcEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCC--CCeeecc
Q 031263 78 -MYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGK--WPILYGN 153 (162)
Q Consensus 78 -~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s 153 (162)
..+.++|++++|+|.++ ++.... .|+..+... +.|.++|+||+|+.+. ...+..+.+.... +.++++|
T Consensus 126 ~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iS 197 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPIS 197 (339)
T ss_pred HHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEe
Confidence 23678999999999775 344554 455555433 3466789999998643 2334444443322 4566655
Q ss_pred cccc
Q 031263 154 LCKN 157 (162)
Q Consensus 154 ~~~~ 157 (162)
+.++
T Consensus 198 Aktg 201 (339)
T PRK15494 198 ALSG 201 (339)
T ss_pred ccCc
Confidence 5444
No 161
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.82 E-value=2.6e-19 Score=131.16 Aligned_cols=112 Identities=18% Similarity=0.102 Sum_probs=75.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCc-cceeeEEEEEEEEECCeEEEEEEEeCCCccccc-c-------chhhhhcC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-S-------LAPMYYRG 82 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~-------~~~~~~~~ 82 (162)
+|+++|.+|||||||+|++++.++..... +..+.+. ...+...+ ..++.+|||||..... . ....++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~-i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR-ISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc-EEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999987653221 2121122 22222222 2578999999975321 1 12345788
Q ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 83 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
+|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+..+
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFK 122 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCH
Confidence 99999999999876554 333433433 36799999999999643
No 162
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=4.1e-19 Score=139.14 Aligned_cols=115 Identities=24% Similarity=0.194 Sum_probs=82.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc--------cccchhhh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPMY 79 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~ 79 (162)
...+|+++|.++||||||+|++++.... ....+..+.+.........+ ..+.+|||||... +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 4579999999999999999999987643 22344444445555555555 5688999999752 33345567
Q ss_pred hcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
++.+|++++|+|++++.++.. ..|...+.. .+.|+++|+||+|+..
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDER 160 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCc
Confidence 889999999999998755432 334444433 4789999999999854
No 163
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.81 E-value=5.3e-19 Score=140.80 Aligned_cols=117 Identities=17% Similarity=0.207 Sum_probs=88.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
.+..+|+++|..++|||||++++.+..+...+.+.++.+.....+..++. ..+.+|||||+..|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 46689999999999999999999998887665555655555555555432 27899999999999999888899999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
+|+|+++...-+. ...+......++|+++++||+|+.+
T Consensus 164 LVVda~dgv~~qT----~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 164 LVVAADDGVMPQT----IEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred EEEECCCCCCHhH----HHHHHHHHHcCCCEEEEEECccccc
Confidence 9999987421111 1112222224789999999999854
No 164
>PRK11058 GTPase HflX; Provisional
Probab=99.81 E-value=4.1e-19 Score=136.92 Aligned_cols=118 Identities=24% Similarity=0.208 Sum_probs=84.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccc--ccchh------hhhcC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY--HSLAP------MYYRG 82 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--~~~~~------~~~~~ 82 (162)
.+|+++|.+|+|||||+|++.+.+......+..+.+.....+...+. ..+.+|||+|..+. ..++. ..++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999987654323333333444445545442 26789999997331 12222 23678
Q ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 83 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
+|++++|+|++++.+++.+..|...+......+.|+++|+||+|+..
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 99999999999998888776666655554445789999999999864
No 165
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.81 E-value=5.6e-19 Score=141.13 Aligned_cols=117 Identities=17% Similarity=0.209 Sum_probs=87.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCcc------ceeeEEEEEEEEE-----CCeEEEEEEEeCCCccc
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQ-------FIEFQES------TIGAAFFSQTLAV-----NDATVKFEIWDTAGQER 71 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~~ 71 (162)
..+|+++|..++|||||+++++... +...+.. ..|.+.....+.+ ++..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4689999999999999999999742 2222211 2244443333322 45668999999999999
Q ss_pred cccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
|...+..+++.+|++++|+|++++.+......|...+. .++|+++|+||+|+.+.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~ 137 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSA 137 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCcc
Confidence 99899999999999999999999766666666654332 36789999999998643
No 166
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.81 E-value=8.7e-19 Score=121.32 Aligned_cols=112 Identities=20% Similarity=0.169 Sum_probs=81.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccc----------------eeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQEST----------------IGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 75 (162)
+|+++|.+++|||||++++++.......... .+........ ......+.+||+||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATF--EWPDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEE--eeCCEEEEEEeCCCcHHHHHH
Confidence 5899999999999999999988766433211 1112112222 223468999999999888888
Q ss_pred hhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
+..++..+|++++|+|++++.+.. ...++..+.. .+.|+++++||+|+..
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcc
Confidence 888899999999999998765433 2344444433 4789999999999975
No 167
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.80 E-value=1.8e-19 Score=120.85 Aligned_cols=137 Identities=18% Similarity=0.158 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccc------cchhhhh--cC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH------SLAPMYY--RG 82 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~--~~ 82 (162)
++|+++|.|++|||||+|++++.+......|..+.+.....+...+ ..+.++|+||..... .+...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999886655556666676666666666 788999999953322 3333443 57
Q ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCH--HHHhhhcCCCCCCeeeccccccc
Q 031263 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA--EARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 83 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
.|++++|+|+++.+ ........+... ..|++++.||+|+..+..... +...+. .++|++.+|+.+..
T Consensus 79 ~D~ii~VvDa~~l~---r~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~id~~~Ls~~---Lg~pvi~~sa~~~~ 147 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RNLYLTLQLLEL---GIPVVVVLNKMDEAERKGIEIDAEKLSER---LGVPVIPVSARTGE 147 (156)
T ss_dssp SSEEEEEEEGGGHH---HHHHHHHHHHHT---TSSEEEEEETHHHHHHTTEEE-HHHHHHH---HTS-EEEEBTTTTB
T ss_pred CCEEEEECCCCCHH---HHHHHHHHHHHc---CCCEEEEEeCHHHHHHcCCEECHHHHHHH---hCCCEEEEEeCCCc
Confidence 99999999998743 333344444444 689999999999966554433 333333 36788888776654
No 168
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.80 E-value=9.3e-19 Score=122.17 Aligned_cols=144 Identities=19% Similarity=0.141 Sum_probs=86.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC----CCCC---CC--ccceeeEEEEEEEE----------ECCeEEEEEEEeCCCccc
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG----QFIE---FQ--ESTIGAAFFSQTLA----------VNDATVKFEIWDTAGQER 71 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~----~~~~---~~--~~~~~~~~~~~~~~----------~~~~~~~~~~~D~~g~~~ 71 (162)
+||+++|+.++|||||+++|.+. .+.. .. ..|.+..+....+. ..+....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 1111 11 12333333333332 123367899999999866
Q ss_pred cccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccC--CHHHHhhh----c---
Q 031263 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--TAEARSTS----L--- 142 (162)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~~----~--- 142 (162)
+..........+|++++|+|+++.........|. +... .+.|+++++||+|+...... ..++.+.. +
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5333333455689999999999754333322222 1122 25699999999998643221 12222221 1
Q ss_pred CCCCCCeeeccccccc
Q 031263 143 CPGKWPILYGNLCKNS 158 (162)
Q Consensus 143 ~~~~~~~~~~s~~~~~ 158 (162)
....++++++|+.+..
T Consensus 157 ~~~~~~vi~iSa~~g~ 172 (192)
T cd01889 157 RFKNSPIIPVSAKPGG 172 (192)
T ss_pred CcCCCCEEEEeccCCC
Confidence 1245677777766553
No 169
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.7e-19 Score=118.25 Aligned_cols=126 Identities=21% Similarity=0.312 Sum_probs=104.2
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
.++.-|++++|..|+|||||++.+.+....+ ..||..++ +..+.+.+ ++++.+|.+|+.+-++.|+.|+..++++
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHPT--SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~i 91 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAI 91 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHccccccc-cCCCcCCC--hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhcee
Confidence 3567799999999999999999999988776 56666654 34444555 8999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHh
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARS 139 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~ 139 (162)
++.+|+.|.+.|.+.+.-++.+.... ...+|+++.+||+|...+. ++++.+
T Consensus 92 v~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~ 143 (193)
T KOG0077|consen 92 VYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELR 143 (193)
T ss_pred EeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHH
Confidence 99999999999999987777765543 4799999999999985543 555544
No 170
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.80 E-value=5.4e-22 Score=133.31 Aligned_cols=154 Identities=29% Similarity=0.477 Sum_probs=125.3
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCe-EEEEEEEeCCCccccccchhhhhcCC
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQERYHSLAPMYYRGA 83 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~ 83 (162)
......+|++|+|+.++|||+++.++....+...|..+++.++..+.+..+.+ .+++++||..|++++..+..-|++.+
T Consensus 20 ~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea 99 (229)
T KOG4423|consen 20 KKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEA 99 (229)
T ss_pred chhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCC
Confidence 33355699999999999999999999999999999999999988887766654 47899999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhC----CCCCeEEEEEeCCCCcCcccCC-HHHHhhhcCCCCCCeeeccccccc
Q 031263 84 AAAIIVYDITNQASFERAKKWVQELQAQG----NPNMVMALAGNKADLLDARKVT-AEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
++.++|||+++...|+....|++.+.... ..++|+++..||||.......+ ......+...+++.=.+..+.|.+
T Consensus 100 ~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ken 179 (229)
T KOG4423|consen 100 HGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKEN 179 (229)
T ss_pred cceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccc
Confidence 99999999999999999999999987643 3678999999999985433222 233445666667655555555543
No 171
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=4e-18 Score=130.94 Aligned_cols=141 Identities=17% Similarity=0.089 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCcc--ceeeEEEEEEEEECCeEEEEEEEeCCCccc----cccchhhh---hc
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQES--TIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPMY---YR 81 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~ 81 (162)
..|+++|.++||||||++++++.+......+ |..++.. .+..+ ....+.+||+||.-+ ...+...+ +.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG--~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhie 235 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG--VVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIE 235 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE--EEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHh
Confidence 4899999999999999999998764322222 2222222 22222 135789999999632 22233333 45
Q ss_pred CCcEEEEEEECCCh---HHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccc
Q 031263 82 GAAAAIIVYDITNQ---ASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCK 156 (162)
Q Consensus 82 ~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (162)
.++++++|+|+++. +.++....|...+..+.. ...|++||+||+|+... .+..+.......++++.+|+.+
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~t 311 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALT 311 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCC
Confidence 58999999999864 667777888888877632 47899999999998432 1222222233336777766655
Q ss_pred cc
Q 031263 157 NS 158 (162)
Q Consensus 157 ~~ 158 (162)
..
T Consensus 312 ge 313 (424)
T PRK12297 312 GQ 313 (424)
T ss_pred CC
Confidence 43
No 172
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.79 E-value=1.6e-18 Score=116.54 Aligned_cols=113 Identities=18% Similarity=0.146 Sum_probs=75.6
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------chhhhhcCCc
Q 031263 14 VLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LAPMYYRGAA 84 (162)
Q Consensus 14 ~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~~ 84 (162)
+++|.+|+|||||++++.+.... ....+..+.+........++ ..+.+|||||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 58999999999999999987522 11223333333344444444 6789999999877543 3345678899
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCccc
Q 031263 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~ 132 (162)
++++++|..++.+.... .+...+.. ...|+++|+||+|+.....
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~ 122 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEED 122 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHH
Confidence 99999999875433322 22222322 2589999999999976543
No 173
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.79 E-value=2.5e-18 Score=140.18 Aligned_cols=118 Identities=17% Similarity=0.180 Sum_probs=88.6
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
..+...|+++|..++|||||+++|.+..+.....+.++.+.....+..++ ..++||||||+..|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45678999999999999999999998877655445555444444555544 6789999999999999998889999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
++|||+++... ..+...+......++|+++++||+|+.+.
T Consensus 365 ILVVdAddGv~----~qT~e~i~~a~~~~vPiIVviNKiDl~~a 404 (787)
T PRK05306 365 VLVVAADDGVM----PQTIEAINHAKAAGVPIIVAINKIDKPGA 404 (787)
T ss_pred EEEEECCCCCC----HhHHHHHHHHHhcCCcEEEEEECcccccc
Confidence 99999988421 11222222222357899999999999653
No 174
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=2.4e-18 Score=133.85 Aligned_cols=145 Identities=20% Similarity=0.159 Sum_probs=93.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc----cccch---hhhhcC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLA---PMYYRG 82 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~---~~~~~~ 82 (162)
...|+|+|.++||||||+|++.+.+......+..+.......+...+ ..|.+||+||.-. ...+. ...+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 46899999999999999999998765432222222222233344444 6799999999521 11111 223577
Q ss_pred CcEEEEEEECCC----hHHHHHHHHHHHHHHHhC-----------CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCC
Q 031263 83 AAAAIIVYDITN----QASFERAKKWVQELQAQG-----------NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKW 147 (162)
Q Consensus 83 ~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~-----------~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 147 (162)
++++++|+|+++ ++.++.+..|...+..+. ....|+++|+||+|+.+...... ..+..+...+|
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e-~l~~~l~~~g~ 315 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE-FVRPELEARGW 315 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH-HHHHHHHHcCC
Confidence 999999999985 234555555665555442 24689999999999965443222 22233444578
Q ss_pred Ceeecccccc
Q 031263 148 PILYGNLCKN 157 (162)
Q Consensus 148 ~~~~~s~~~~ 157 (162)
+++.+|+.+.
T Consensus 316 ~Vf~ISA~tg 325 (500)
T PRK12296 316 PVFEVSAASR 325 (500)
T ss_pred eEEEEECCCC
Confidence 8888776654
No 175
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=6.5e-18 Score=115.15 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=77.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC-CCccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc----------c-hh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS----------L-AP 77 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~-~~ 77 (162)
.++|+++|.+++|||||++++++..... ...+..........+..++ ..+.+||+||...... . ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5799999999999999999999876432 1222222222233344444 4578999999643310 1 12
Q ss_pred hhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
..+..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+...+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~ 129 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKD 129 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCcc
Confidence 346789999999999988665443 23333322 357999999999997653
No 176
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.78 E-value=4.7e-18 Score=114.93 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=74.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------chhhhhc
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LAPMYYR 81 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~ 81 (162)
..+|+++|.+|+|||||++++.+............... ............+.+|||||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRN-RIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceec-eEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998765432211111111 11111223346889999999654322 2334578
Q ss_pred CCcEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 82 GAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 82 ~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
.+|++++|+|++++ +.... .+...+... +.|+++++||+|+..
T Consensus 82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 82 DVDLVLFVVDASEP--IGEGDEFILELLKKS---KTPVILVLNKIDLVK 125 (168)
T ss_pred hCCEEEEEEECCCc--cCchHHHHHHHHHHh---CCCEEEEEEchhccc
Confidence 89999999999986 22222 333333332 678999999999874
No 177
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.78 E-value=4.2e-18 Score=137.85 Aligned_cols=116 Identities=22% Similarity=0.296 Sum_probs=86.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEE--EEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.+..+|+++|..++|||||++++.+..+.....+.++.+. .......++....+.+|||||+..|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4668999999999999999999998877654433333322 22223333455889999999999999999999999999
Q ss_pred EEEEEECCCh---HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 86 AIIVYDITNQ---ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 86 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
+++|+|+++. .+++.+. .+ ...++|+++++||+|+...
T Consensus 322 aILVVDA~dGv~~QT~E~I~----~~---k~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAIN----YI---QAANVPIIVAINKIDKANA 362 (742)
T ss_pred EEEEEECcCCCChhhHHHHH----HH---HhcCceEEEEEECCCcccc
Confidence 9999999874 3333322 22 2357899999999998653
No 178
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.78 E-value=4e-18 Score=136.09 Aligned_cols=139 Identities=17% Similarity=0.144 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC---CCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG---QFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
+.|+++|..++|||||+++|.+. .+..++.++++.+.....+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999963 33344456666666666666655 78999999999998877778889999999
Q ss_pred EEEECCC---hHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcCcccCC--HHHHhhhcCCC----CCCeeecccccc
Q 031263 88 IVYDITN---QASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVT--AEARSTSLCPG----KWPILYGNLCKN 157 (162)
Q Consensus 88 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~~--~~~~~~~~~~~----~~~~~~~s~~~~ 157 (162)
+|+|+++ +.+++.+. .+... ++| +++++||+|+.+...+. .++.+..+... .++++.+|+.++
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~l---gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDLL---GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHHc---CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999998 44444332 22222 456 99999999997654332 22333333221 467777776554
Q ss_pred c
Q 031263 158 S 158 (162)
Q Consensus 158 ~ 158 (162)
.
T Consensus 152 ~ 152 (581)
T TIGR00475 152 Q 152 (581)
T ss_pred C
Confidence 3
No 179
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.77 E-value=1e-17 Score=130.04 Aligned_cols=115 Identities=19% Similarity=0.202 Sum_probs=80.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCC-CCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccch----------
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA---------- 76 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~---------- 76 (162)
...+||+++|.+++|||||+|++++..... ...+..+.+.....+..++ ..+.+|||||..++....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 345899999999999999999999876432 2233333333344444454 478999999975543221
Q ss_pred -hhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 77 -PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 77 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
...++.+|++++|+|++++.+..... ++..+.. ...|+++|+||+|+.
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccC
Confidence 23578899999999999876655443 3333332 367999999999997
No 180
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.77 E-value=1.6e-18 Score=117.49 Aligned_cols=124 Identities=22% Similarity=0.195 Sum_probs=79.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccc-----ccchhhhhcCCcEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-----HSLAPMYYRGAAAA 86 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~~~~~~~ 86 (162)
+|+++|.+++|||||+|++.+... . ...+.+.. +... .+||+||.... ..+ ...++.+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~~~v~-------~~~~----~~iDtpG~~~~~~~~~~~~-~~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKTQAVE-------FNDK----GDIDTPGEYFSHPRWYHAL-ITTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-CccceEEE-------ECCC----CcccCCccccCCHHHHHHH-HHHHhcCCEE
Confidence 799999999999999999876432 1 12222222 2222 26999997322 222 2336889999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCC--Ceeeccccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKW--PILYGNLCKNS 158 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~ 158 (162)
++|+|+++.+++ +..|+..+ ....|+++++||+|+.+. ..+..+.++...++ +++++|+-+..
T Consensus 69 l~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~ 133 (158)
T PRK15467 69 IYVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQ 133 (158)
T ss_pred EEEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCcc
Confidence 999999988765 33454443 246789999999998542 23444444444443 67776665543
No 181
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.77 E-value=7.1e-18 Score=117.77 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=87.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCc----------cccccchh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ----------ERYHSLAP 77 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~ 77 (162)
....+|+++|.+|+|||||++++.+..+.....++.+.+........ ...+.+|||||. ..+..+..
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 45689999999999999999999987655444555544332222222 267999999994 23334445
Q ss_pred hhhcCC---cEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCC--HHHHhhhcCCCCCCeeec
Q 031263 78 MYYRGA---AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--AEARSTSLCPGKWPILYG 152 (162)
Q Consensus 78 ~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~ 152 (162)
.+++.+ +++++++|.+++.+.... .+...+ .. .+.|+++++||+|+....... .++....+.....+++++
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l-~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 174 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWL-KE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILF 174 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHH-HHHHHH-HH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 555544 678888898875332221 112222 22 367899999999986543222 223434444445566665
Q ss_pred ccccc
Q 031263 153 NLCKN 157 (162)
Q Consensus 153 s~~~~ 157 (162)
|+...
T Consensus 175 Sa~~~ 179 (196)
T PRK00454 175 SSLKK 179 (196)
T ss_pred EcCCC
Confidence 55443
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=1.3e-17 Score=129.62 Aligned_cols=111 Identities=20% Similarity=0.153 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc--------cccchhhhhc
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPMYYR 81 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 81 (162)
.+|+++|.+|||||||+|++.+.... ....+..+.+........++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987643 22234444455555565665 7899999999876 2233455678
Q ss_pred CCcEEEEEEECCChHHHH--HHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 82 GAAAAIIVYDITNQASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 82 ~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
.+|++++|+|++++.+.. .+..|+.. .+.|+++|+||+|..+
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~ 123 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPD 123 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCcc
Confidence 899999999998753322 23334332 2689999999999644
No 183
>PRK00089 era GTPase Era; Reviewed
Probab=99.77 E-value=7.8e-18 Score=124.63 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=74.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccc--------cchhhhh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH--------SLAPMYY 80 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~ 80 (162)
+.-.|+++|.+|||||||+|++++..+........+.......+.. ....++.+|||||..... ......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~-~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVT-EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEE-cCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 4567999999999999999999998765322211111111111211 123789999999964322 2233457
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
..+|++++|+|++++ +.....++..... ..+.|+++|+||+|+..
T Consensus 83 ~~~D~il~vvd~~~~--~~~~~~~i~~~l~--~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 83 KDVDLVLFVVDADEK--IGPGDEFILEKLK--KVKTPVILVLNKIDLVK 127 (292)
T ss_pred hcCCEEEEEEeCCCC--CChhHHHHHHHHh--hcCCCEEEEEECCcCCC
Confidence 789999999999983 2222222222222 23689999999999974
No 184
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=2.8e-17 Score=110.71 Aligned_cols=143 Identities=29% Similarity=0.413 Sum_probs=100.4
Q ss_pred CCCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCC--------C----ccceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031263 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF--------Q----ESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (162)
Q Consensus 4 ~~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~--------~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 71 (162)
...+....||+++|+-++||||+++++........ + ..|...++..... +....+.+++||||.+
T Consensus 4 ~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~---~~~~~v~LfgtPGq~R 80 (187)
T COG2229 4 AANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDTGVHLFGTPGQER 80 (187)
T ss_pred ccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE---cCcceEEEecCCCcHH
Confidence 34566789999999999999999999998764211 1 1233334333333 1235788999999999
Q ss_pred cccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCC--CCCe
Q 031263 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPG--KWPI 149 (162)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~ 149 (162)
|+.+|..+++++.+.++++|.+++..+ +....+..+.... .+|+++++||.|+.+.+.. +..++.+... ..+.
T Consensus 81 F~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~pp--e~i~e~l~~~~~~~~v 155 (187)
T COG2229 81 FKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPP--EKIREALKLELLSVPV 155 (187)
T ss_pred HHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCH--HHHHHHHHhccCCCce
Confidence 999999999999999999999998877 4444444444432 3999999999999765544 4444444333 4455
Q ss_pred eeccc
Q 031263 150 LYGNL 154 (162)
Q Consensus 150 ~~~s~ 154 (162)
+...+
T Consensus 156 i~~~a 160 (187)
T COG2229 156 IEIDA 160 (187)
T ss_pred eeeec
Confidence 55433
No 185
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.76 E-value=7.4e-18 Score=130.65 Aligned_cols=149 Identities=15% Similarity=0.081 Sum_probs=93.8
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhC--CCCC-----------------------------CCccceeeEEEEEEEEE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKG--QFIE-----------------------------FQESTIGAAFFSQTLAV 54 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~ 54 (162)
..++.++|+++|..++|||||+++|+.. .... +....++.+..... +
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~--~ 80 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK--F 80 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE--E
Confidence 4567899999999999999999999862 2110 11223344443333 3
Q ss_pred CCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHH--HHHhCCCCCeEEEEEeCCCCcCccc
Q 031263 55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE--LQAQGNPNMVMALAGNKADLLDARK 132 (162)
Q Consensus 55 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~--~~~~~~~~~piiiv~nK~D~~~~~~ 132 (162)
......+.+||+||++.|.......+..+|++++|+|+++++++. ...+... +.... ...|+++++||+|+.+...
T Consensus 81 ~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~-~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 81 ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEV-QPQTREHAFLARTL-GINQLIVAINKMDSVNYDE 158 (426)
T ss_pred ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCccc-CCchHHHHHHHHHc-CCCeEEEEEEChhccCccH
Confidence 444578999999999887665556678899999999999875431 1222222 22221 2458999999999964322
Q ss_pred C----CHHHHhhhcCCC-----CCCeeeccccccc
Q 031263 133 V----TAEARSTSLCPG-----KWPILYGNLCKNS 158 (162)
Q Consensus 133 ~----~~~~~~~~~~~~-----~~~~~~~s~~~~~ 158 (162)
. ..++.+.++... .++++++|+..+.
T Consensus 159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ 193 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGD 193 (426)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccc
Confidence 1 122333333322 3567776655543
No 186
>COG1159 Era GTPase [General function prediction only]
Probab=99.76 E-value=8.2e-18 Score=121.44 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=82.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc--------cccchhhh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPMY 79 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~ 79 (162)
.+.--|+++|.|+||||||+|++++.+..-.+....++......+ ......++.+.||||... ........
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI-~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-VTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEE-EEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 345679999999999999999999998775443333322223333 223368999999999432 12333444
Q ss_pred hcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCccc
Q 031263 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (162)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~ 132 (162)
+.++|+++|++|++++ +..-.+|+...... .+.|++++.||+|......
T Consensus 83 l~dvDlilfvvd~~~~--~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~ 131 (298)
T COG1159 83 LKDVDLILFVVDADEG--WGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKT 131 (298)
T ss_pred hccCcEEEEEEecccc--CCccHHHHHHHHhh--cCCCeEEEEEccccCCcHH
Confidence 7889999999999874 22334444443333 4679999999999876655
No 187
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.75 E-value=1.6e-17 Score=135.65 Aligned_cols=116 Identities=22% Similarity=0.240 Sum_probs=81.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc----------cccch-
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHSLA- 76 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~- 76 (162)
...||+++|.++||||||+|++++.+.. ....+..+.+.....+..++ ..+.+|||||..+ |..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999998753 22334444454445555665 4567999999532 22111
Q ss_pred hhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
...++.+|++++|+|++++.++.... ++..+.. .+.|+++|+||+|+.+.
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDE 576 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCCh
Confidence 23468899999999999987766654 3333332 36799999999999653
No 188
>PRK10218 GTP-binding protein; Provisional
Probab=99.75 E-value=7.4e-17 Score=128.85 Aligned_cols=146 Identities=17% Similarity=0.198 Sum_probs=102.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh--CCCCCCC------------ccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK--GQFIEFQ------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS 74 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 74 (162)
...||+++|..++|||||+++++. +.+.... ..+.+.+...+...+....+++.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 457999999999999999999997 3332211 22345555566666666778999999999999999
Q ss_pred chhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCH-HHHhhhc-------CCCC
Q 031263 75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA-EARSTSL-------CPGK 146 (162)
Q Consensus 75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~-~~~~~~~-------~~~~ 146 (162)
.+..+++.+|++++|+|+++.... ....++..+.. .++|.++++||+|+.+.+.... .+....+ ....
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 999999999999999999875322 22333333333 3678899999999875543221 2222222 1245
Q ss_pred CCeeeccccccc
Q 031263 147 WPILYGNLCKNS 158 (162)
Q Consensus 147 ~~~~~~s~~~~~ 158 (162)
||++++|+.++.
T Consensus 160 ~PVi~~SA~~G~ 171 (607)
T PRK10218 160 FPIVYASALNGI 171 (607)
T ss_pred CCEEEeEhhcCc
Confidence 888888876664
No 189
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.75 E-value=3.2e-17 Score=109.75 Aligned_cols=139 Identities=20% Similarity=0.129 Sum_probs=88.9
Q ss_pred EEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc-------hhhhhcCCcEE
Q 031263 15 LLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-------APMYYRGAAAA 86 (162)
Q Consensus 15 viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~~~~~~~ 86 (162)
++|..|+|||||++++.+.... ....+.............. ....+.+||+||...+... ...++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987655 2222222222222222222 1468999999997665433 33467889999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHH---HhhhcCCCCCCeeeccccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA---RSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~ 158 (162)
++++|.++..+..... |.... ...+.|+++++||+|+.......... ..........+++++|+.++.
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~---~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 150 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELL---RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGE 150 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHH---HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccC
Confidence 9999999876655544 33332 23578999999999997654433321 222333345667776665543
No 190
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=4.5e-17 Score=126.41 Aligned_cols=136 Identities=16% Similarity=0.102 Sum_probs=87.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC-CCccceeeEEEEEEEEECCeEEEEEEEeCCCc--------cccccchhhhhcC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ--------ERYHSLAPMYYRG 82 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~~ 82 (162)
+|+++|.+|||||||+|++.+..... ...+..+.+........++ ..+.+|||||. ..+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999876432 2233444444455555555 56999999996 3344455667889
Q ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCC-Ceeeccccccc
Q 031263 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKW-PILYGNLCKNS 158 (162)
Q Consensus 83 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 158 (162)
+|++++|+|++++.+... ..+...+.+ .+.|+++|+||+|+........ .+...+. +++.+|+..+.
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~-----~~~~lg~~~~~~vSa~~g~ 146 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAVAA-----EFYSLGFGEPIPISAEHGR 146 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCcccccHH-----HHHhcCCCCeEEEeCCcCC
Confidence 999999999987533221 122222332 3678999999999865442211 1222344 46666665543
No 191
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=3.4e-18 Score=113.87 Aligned_cols=147 Identities=22% Similarity=0.244 Sum_probs=106.0
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCC---CC----CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhh
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ---FI----EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY 79 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 79 (162)
++....|+++|..++|||||+.+..... +. ..-.+|.|.+..... +. ...+.+||.+|++..+.+|..|
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~--v~--~~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE--VC--NAPLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee--ec--cceeEEEEcCChHHHHHHHHHH
Confidence 3456889999999999999998766421 11 223466665543333 33 4688999999999999999999
Q ss_pred hcCCcEEEEEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCcccCCHHHHh----hhcCCCCCCeeeccc
Q 031263 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEARS----TSLCPGKWPILYGNL 154 (162)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~----~~~~~~~~~~~~~s~ 154 (162)
|..+++++++||+++++.|+....-++.+... ....+|+++.+||.|+.+...+.+...- .......+++..+|+
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchh
Confidence 99999999999999999999988666666543 3478999999999999765433222111 122344556666665
Q ss_pred ccc
Q 031263 155 CKN 157 (162)
Q Consensus 155 ~~~ 157 (162)
-..
T Consensus 170 l~g 172 (197)
T KOG0076|consen 170 LTG 172 (197)
T ss_pred hhc
Confidence 544
No 192
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.75 E-value=2.4e-17 Score=131.79 Aligned_cols=133 Identities=17% Similarity=0.109 Sum_probs=91.4
Q ss_pred cCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc------hhhhh--cCCcEEEE
Q 031263 17 GDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------APMYY--RGAAAAII 88 (162)
Q Consensus 17 G~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~i~ 88 (162)
|++|+|||||+|++.+........+..+.+.....+..++ .++++|||||+..+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999876555566666666556665655 56899999999877543 33333 36899999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|+|.++.+. ...+...+.+ .+.|+++++||+|+.+++.+..+ .+...+..+.+++++|+.++.
T Consensus 79 VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~~d-~~~L~~~lg~pvv~tSA~tg~ 141 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEKKGIRID-EEKLEERLGVPVVPTSATEGR 141 (591)
T ss_pred EecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHhCCChhh-HHHHHHHcCCCEEEEECCCCC
Confidence 999987432 2233333322 46899999999999765555432 333334456677777765543
No 193
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=3.7e-17 Score=124.81 Aligned_cols=120 Identities=22% Similarity=0.154 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccc----cch---hhhhcCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH----SLA---PMYYRGA 83 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~---~~~~~~~ 83 (162)
..|+++|.++||||||+|++++.+......|..+.....-.+... ....+.++|+||..+-. .+. ...+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 479999999999999999999876543222222222222223232 12458999999964211 011 1246789
Q ss_pred cEEEEEEECC---ChHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCcc
Q 031263 84 AAAIIVYDIT---NQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDAR 131 (162)
Q Consensus 84 ~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~ 131 (162)
+++++|+|++ +.+.++.+..|+..+..+.. .+.|+++|+||+|+....
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~ 291 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE 291 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH
Confidence 9999999998 45667778888888876532 468999999999986543
No 194
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.74 E-value=2.3e-17 Score=118.62 Aligned_cols=129 Identities=19% Similarity=0.162 Sum_probs=85.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--------C-----CC---ccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFI--------E-----FQ---ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~--------~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 75 (162)
+|+++|..++|||||+++++...-. . .+ ....+.+.......+.....++.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999863111 0 00 011111222223333344578999999999999888
Q ss_pred hhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCccc-CCHHHHhhhcCC
Q 031263 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-VTAEARSTSLCP 144 (162)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-~~~~~~~~~~~~ 144 (162)
+..+++.+|++++|+|+++.... ....|+..+... ++|+++++||+|+...+. ....+.+..+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~ 146 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAGADLEKVYQEIKEKLSS 146 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccCCCHHHHHHHHHHHHCC
Confidence 88899999999999999986432 334454544433 678999999999875332 223334444443
No 195
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.74 E-value=5.4e-17 Score=129.96 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=85.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCC--CC-----CCC------ccceeeEEEEEEEEE-----CCeEEEEEEEeCCCc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQ--FI-----EFQ------ESTIGAAFFSQTLAV-----NDATVKFEIWDTAGQ 69 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~--~~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~ 69 (162)
....+|+++|..++|||||+.+++... .. ..+ ....|.+.....+.. ++..+.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 345799999999999999999998631 11 000 012233332222222 455789999999999
Q ss_pred cccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
.+|...+..+++.+|++++|+|++++........|.... ..++|+++|+||+|+.+.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAA 141 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcc
Confidence 999988999999999999999999875555555554332 236789999999998653
No 196
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.74 E-value=9.5e-17 Score=131.34 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=94.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc----------hhhh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL----------APMY 79 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~ 79 (162)
.++|+++|++|+|||||+|++.+........+ |.+...+...+.....++.+||+||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~p--GvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWA--GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCC--CceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 57999999999999999999998765432333 33333444444555678999999998766432 2223
Q ss_pred h--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 80 Y--RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 80 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+ ..+|++++|+|.++.++ ...|...+.+. ++|+++++||+|+.+++.+.. ..+...+..+.+++.+|+.++
T Consensus 81 l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~---giPvIvVlNK~Dl~~~~~i~i-d~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLER---NLYLTLQLLEL---GIPCIVALNMLDIAEKQNIRI-DIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchh---hHHHHHHHHHc---CCCEEEEEEchhhhhccCcHH-HHHHHHHHhCCCEEEEEeecC
Confidence 2 37899999999998543 23344444433 689999999999876555533 233333445677888776655
Q ss_pred c
Q 031263 158 S 158 (162)
Q Consensus 158 ~ 158 (162)
.
T Consensus 154 ~ 154 (772)
T PRK09554 154 R 154 (772)
T ss_pred C
Confidence 4
No 197
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.73 E-value=2.6e-17 Score=127.60 Aligned_cols=119 Identities=19% Similarity=0.179 Sum_probs=78.4
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCC-------------------------------CCccceeeEEEEEEEEEC
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE-------------------------------FQESTIGAAFFSQTLAVN 55 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 55 (162)
.++.++|+++|..++|||||+++|+...-.- +..+.++.+.... .+.
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~--~~~ 80 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHK--KFE 80 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeE--EEe
Confidence 4568999999999999999999998432110 0112233333233 333
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHH-HHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 56 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
...+++.+|||||+..|.......+..+|++++|+|++++..+.. ...++..+... ...|+++++||+|+.+
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVN 153 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEcccccc
Confidence 445789999999998876555555778999999999987312211 22232223322 2347999999999965
No 198
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.73 E-value=3.9e-17 Score=114.98 Aligned_cols=146 Identities=15% Similarity=0.084 Sum_probs=85.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC---CCCccceeeEEEEEEEEEC---------------------------C----
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFI---EFQESTIGAAFFSQTLAVN---------------------------D---- 56 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---------------------------~---- 56 (162)
++|+++|..++|||||+.++.+.... .......+........... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 57999999999999999999754211 1111111111111111000 0
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCC--
Q 031263 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT-- 134 (162)
Q Consensus 57 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~-- 134 (162)
....+.+|||||++.+.......+..+|++++|+|++++.........+..+... ...|+++++||+|+.+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1267999999999888777777778889999999999741111111222222222 234799999999996533221
Q ss_pred HHHHhhhcCC---CCCCeeeccccccc
Q 031263 135 AEARSTSLCP---GKWPILYGNLCKNS 158 (162)
Q Consensus 135 ~~~~~~~~~~---~~~~~~~~s~~~~~ 158 (162)
.++.+..+.. ..++++.+|+.++.
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~ 185 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKY 185 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCC
Confidence 1233333332 25677777665543
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.73 E-value=1.6e-16 Score=129.81 Aligned_cols=115 Identities=23% Similarity=0.185 Sum_probs=79.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCC-CCccceeeEEEEEEEEECCeEEEEEEEeCCCccc--------cccchhh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPM 78 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~ 78 (162)
....+|+++|.++||||||+|++++..... ...+..+.+........++ ..+.+|||||... +......
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 345789999999999999999999876432 2234444444443443444 5789999999653 2233445
Q ss_pred hhcCCcEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 79 YYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
+++.+|++++|+|+++. +.... .|...+.. .+.|+++|+||+|+..
T Consensus 351 ~~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 351 AVSLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQA 397 (712)
T ss_pred HHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECccccc
Confidence 67899999999999864 22222 45555543 4789999999999854
No 200
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.73 E-value=5.4e-17 Score=115.07 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=79.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------------ccceeeEEEEEEEE--E---CCeEEEEEEEeCCCc
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQ-----------------ESTIGAAFFSQTLA--V---NDATVKFEIWDTAGQ 69 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~--~---~~~~~~~~~~D~~g~ 69 (162)
+|+++|..++|||||+++++........ ....+.+....... . ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 7999999999999999999975433210 01111221111111 1 345688999999999
Q ss_pred cccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
..|......++..+|++++|+|+++..+... ..|+..+.. .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888888999999999999987655432 344444433 358999999999985
No 201
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.73 E-value=1e-16 Score=117.02 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=80.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC-CC----------------Cc---cceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFI-EF----------------QE---STIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~-~~----------------~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 69 (162)
..+|+++|..++|||||+++++...-. .. +. ...+.+.......+.....++.+|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 368999999999999999999853111 00 00 00112222333344555689999999999
Q ss_pred cccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
.+|.......++.+|++++|+|+++... .....++..... .++|+++++||+|+....
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RGIPIITFINKLDREGRD 139 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cCCCEEEEEECCccCCCC
Confidence 9888777778899999999999987532 222333333322 468999999999986543
No 202
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.73 E-value=7.7e-17 Score=118.22 Aligned_cols=140 Identities=14% Similarity=0.153 Sum_probs=88.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCC----------CccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-----
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEF----------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH----- 73 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----- 73 (162)
..++|+++|.+|+|||||+|++++..+... ..++.+.......+..++..+++.+|||||.....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999999877643 34455555556666667778899999999942211
Q ss_pred ---------------------cchhhhhc--CCcEEEEEEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 74 ---------------------SLAPMYYR--GAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 74 ---------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
......+. .+|+++++++.+.. .+... ...++.+. ..+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence 01112233 25677777776642 12222 22333332 2689999999999965
Q ss_pred ccc--CCHHHHhhhcCCCCCCeeecc
Q 031263 130 ARK--VTAEARSTSLCPGKWPILYGN 153 (162)
Q Consensus 130 ~~~--~~~~~~~~~~~~~~~~~~~~s 153 (162)
+.. ...+...+.+...+..++...
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~ 183 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFP 183 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCC
Confidence 322 233444455555566555443
No 203
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.73 E-value=6.7e-17 Score=114.91 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=78.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--CC--------------CccceeeEEEEEEEEEC--------CeEEEEEEEeCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFI--EF--------------QESTIGAAFFSQTLAVN--------DATVKFEIWDTA 67 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~--------~~~~~~~~~D~~ 67 (162)
+|+++|..++|||||+.+|+...-. .. ....+++......+... +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999999864311 00 00111111111122222 347889999999
Q ss_pred CccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
|+..|.......++.+|++++|+|++++....... .+.... ..++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~~~---~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQAL---KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHHHH---HcCCCEEEEEECCCcc
Confidence 99999988899999999999999999875443322 222222 2357899999999985
No 204
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=1.4e-16 Score=123.89 Aligned_cols=116 Identities=19% Similarity=0.217 Sum_probs=79.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc----------ch
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS----------LA 76 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~ 76 (162)
...++|+++|.+++|||||+|++++.... ....+..+.+.....+..++ ..+.+|||||...... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 35699999999999999999999986533 22334344443334443444 5678999999643211 11
Q ss_pred -hhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 77 -PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 77 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
...++.+|++++|+|++++.+.... .+...+.. ...|+++++||+|+.+
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVD 298 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCC
Confidence 2357789999999999987665443 23333333 3578999999999864
No 205
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.72 E-value=9.3e-17 Score=128.29 Aligned_cols=143 Identities=17% Similarity=0.223 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC--CCCCCC------------ccceeeEEEEEEEEECCeEEEEEEEeCCCccccccch
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG--QFIEFQ------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA 76 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 76 (162)
.+|+++|..++|||||+++++.. .+.... ....|.+...+...+.....++.+|||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 48999999999999999999963 222111 1122333334444444456899999999999999888
Q ss_pred hhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCC-HHHHhhhc-------CCCCCC
Q 031263 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT-AEARSTSL-------CPGKWP 148 (162)
Q Consensus 77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~-~~~~~~~~-------~~~~~~ 148 (162)
..+++.+|++++|+|+++.. +.+...|+..+... ++|+++++||+|+.+.+... ..+....+ ....++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 89999999999999998742 34455666665544 67899999999986544321 12222222 223567
Q ss_pred eeecccccc
Q 031263 149 ILYGNLCKN 157 (162)
Q Consensus 149 ~~~~s~~~~ 157 (162)
++++|+..+
T Consensus 158 vl~~SA~~g 166 (594)
T TIGR01394 158 IVYASGRAG 166 (594)
T ss_pred EEechhhcC
Confidence 777776655
No 206
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.71 E-value=1.7e-16 Score=112.13 Aligned_cols=113 Identities=27% Similarity=0.278 Sum_probs=72.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC-------------------------------CccceeeEEEEEEEEECCeEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEF-------------------------------QESTIGAAFFSQTLAVNDATVK 60 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 60 (162)
||+++|.+++|||||+++++...-... ..+..+.+..... +.....+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--~~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRY--FSTPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeE--EecCCce
Confidence 689999999999999999986422110 0022222222222 2334467
Q ss_pred EEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 61 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
+.+|||||+.+|.......++.+|++++|+|++++.. .........+... ...++++|+||+|+.+
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~~--~~~~iIvviNK~D~~~ 144 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSYILSLL--GIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHHc--CCCcEEEEEEchhccc
Confidence 8999999998876656667889999999999987532 1112222222222 2245888999999864
No 207
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.8e-17 Score=107.31 Aligned_cols=146 Identities=25% Similarity=0.365 Sum_probs=111.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
.+..+++++|..|+|||+++-++.-++... ..|+++.+ ... +.++.+++++||.+|+-..+..|+-||.+.+++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfn--ve~--v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFN--VET--VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcC--ccc--cccccccceeeEccCcccccHHHHHHhcccceEE
Confidence 377999999999999999998888776654 56777744 333 4557799999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHH-HHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHH---HhhhcCCCCCCeeeccccccc
Q 031263 88 IVYDITNQASFERAKK-WVQELQAQGNPNMVMALAGNKADLLDARKVTAEA---RSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+|+|.+|++....... ++..+....-.+..+++++||.|.......++.. ..+.++.+-|.++.+|+.+..
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~ 165 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGE 165 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeecccccc
Confidence 9999999988777654 4444444434568899999999986543332222 224456677999998887753
No 208
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.70 E-value=6.5e-17 Score=112.52 Aligned_cols=117 Identities=21% Similarity=0.241 Sum_probs=80.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCC------------------CccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEF------------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 70 (162)
+.++|+++|..++|||||+++++....... .....+.+........+.....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 568999999999999999999996442210 01112222223333212445889999999999
Q ss_pred ccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
.|.......+..+|++++|+|+.++... ...+.+..+.. .++|++++.||+|+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~---~~~p~ivvlNK~D~~~ 136 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE---LGIPIIVVLNKMDLIE 136 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH---TT-SEEEEEETCTSSH
T ss_pred ceeecccceecccccceeeeeccccccc-ccccccccccc---cccceEEeeeeccchh
Confidence 9888888889999999999999976332 22333333333 3677999999999973
No 209
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.70 E-value=6.2e-17 Score=125.25 Aligned_cols=125 Identities=22% Similarity=0.376 Sum_probs=98.2
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.-...+||+++|+.|+||||||-+++..++.+.-.+.......... +....+...+.|++...+-+.....-++.+++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPad--vtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPAD--VTPENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCc--cCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence 3456899999999999999999999999998755444433223322 23334668899998776666665677899999
Q ss_pred EEEEEECCChHHHHHHH-HHHHHHHHhCC--CCCeEEEEEeCCCCcCccc
Q 031263 86 AIIVYDITNQASFERAK-KWVQELQAQGN--PNMVMALAGNKADLLDARK 132 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~ 132 (162)
+.++|+++++++++.+. .|+..+.+..+ .++|+|+||||+|......
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~ 132 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN 132 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc
Confidence 99999999999999986 89999999753 6899999999999854433
No 210
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.70 E-value=2.1e-15 Score=108.27 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=57.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------cchhhhhcCCc
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-------SLAPMYYRGAA 84 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~~ 84 (162)
+|+++|.+++|||||++++.+........+..+.+.....+..++ ..+++||+||..... ......++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 799999999999999999998764322222222222334444444 789999999974332 12235688899
Q ss_pred EEEEEEECCChH
Q 031263 85 AAIIVYDITNQA 96 (162)
Q Consensus 85 ~~i~v~d~~~~~ 96 (162)
++++|+|++++.
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999998765
No 211
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.69 E-value=4.5e-16 Score=108.78 Aligned_cols=146 Identities=18% Similarity=0.181 Sum_probs=90.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC------CCC--------ccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFI------EFQ--------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 75 (162)
.++|+++|..++|||||+++++..... ..+ ....+.+.......+.....++.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 589999999999999999999864100 000 001222222333334445578899999999887766
Q ss_pred hhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcCcccC---CHHHHhhhcCCC-----C
Q 031263 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKV---TAEARSTSLCPG-----K 146 (162)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~---~~~~~~~~~~~~-----~ 146 (162)
....+..+|++++|+|++.... ......+..+... ++| ++++.||+|+...... ..++.+..+... .
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 6677888999999999987422 1223333334333 445 7889999998632221 112344444333 3
Q ss_pred CCeeecccccccc
Q 031263 147 WPILYGNLCKNSN 159 (162)
Q Consensus 147 ~~~~~~s~~~~~~ 159 (162)
.+++++|+-+.-|
T Consensus 158 v~iipiSa~~g~n 170 (195)
T cd01884 158 TPIVRGSALKALE 170 (195)
T ss_pred CeEEEeeCccccC
Confidence 4677777666443
No 212
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.69 E-value=2.8e-16 Score=125.23 Aligned_cols=113 Identities=21% Similarity=0.241 Sum_probs=79.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCc----cceeeEEEEEEE------------EECCeEEEEEEEeCCCccccc
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE----STIGAAFFSQTL------------AVNDATVKFEIWDTAGQERYH 73 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~~~~D~~g~~~~~ 73 (162)
.--|+++|.+++|||||++++.+..+..... .+++..+..... .++.....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3469999999999999999999887654322 222322211110 001111248999999999999
Q ss_pred cchhhhhcCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 74 SLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 74 ~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
.++..+++.+|++++|+|+++ +.+++.+..+ .. .++|+++++||+|+..
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~---~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---YKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH---cCCCEEEEEECCCccc
Confidence 999999999999999999997 4555444322 22 3679999999999863
No 213
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.67 E-value=1.3e-16 Score=109.19 Aligned_cols=119 Identities=23% Similarity=0.359 Sum_probs=73.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhh---hhcCCcEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM---YYRGAAAA 86 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~---~~~~~~~~ 86 (162)
.-.|+++|+.|+|||+|..+|.++...+...+. ..+. .... .+.....+.++|+||+.+.+..... +...+.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~-~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI-AYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE-ECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc-eEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 457999999999999999999999766543332 2221 1111 1223456899999999988754433 47789999
Q ss_pred EEEEECCC-hHHHHHHHHHHHHHHHh---CCCCCeEEEEEeCCCCcCcc
Q 031263 87 IIVYDITN-QASFERAKKWVQELQAQ---GNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 87 i~v~d~~~-~~s~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~~~~ 131 (162)
|||+|.+. +..+.+..+++-.+... ....+|++|++||.|+..++
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 99999984 44555555554444332 24689999999999996654
No 214
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.67 E-value=1.7e-15 Score=110.81 Aligned_cols=133 Identities=17% Similarity=0.108 Sum_probs=85.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC------------------CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFI------------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 73 (162)
+|+++|.+++|||||+++++...-. .+....++.+.....+.. ...++.+|||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence 5899999999999999999852110 011122222222333333 34789999999998888
Q ss_pred cchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCccc-CCHHHHhhhcCCCCCCee
Q 031263 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-VTAEARSTSLCPGKWPIL 150 (162)
Q Consensus 74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~ 150 (162)
..+...++.+|++++|+|+.+...- .....+..+.. .++|++++.||+|+.+.+. ...++.+..+....++..
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~~---~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~ 152 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEP-QTETVWRQADR---YNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQ 152 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEE
Confidence 8888899999999999999875321 12233333333 3678999999999865332 123444444444444433
No 215
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.67 E-value=7.9e-16 Score=104.26 Aligned_cols=109 Identities=22% Similarity=0.316 Sum_probs=72.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc----------cccchhhhhc
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHSLAPMYYR 81 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~ 81 (162)
.|+++|.+|+|||||++++.++.+.....++.+.+........++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999997666554555554444333333333 889999999432 2333334444
Q ss_pred C---CcEEEEEEECCChH--HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 82 G---AAAAIIVYDITNQA--SFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 82 ~---~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
. .+++++++|.++.. ....+..|+.. .+.|+++++||+|+..
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~ 124 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLK 124 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCC
Confidence 3 56888999988652 22223344433 2578999999999853
No 216
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.67 E-value=1.2e-15 Score=108.75 Aligned_cols=116 Identities=19% Similarity=0.302 Sum_probs=74.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEE-CCeEEEEEEEeCCCcccccc-----chhhhhcCCcE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHS-----LAPMYYRGAAA 85 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~~~ 85 (162)
||+++|+.++||||+.+.+.++..+. ....++.+.......+ ....+.+++||+||+..+.. .....++.+++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~-dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR-DTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG-GGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch-hccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999988887665443 2233332222222222 12347899999999875543 45677899999
Q ss_pred EEEEEECCChH---HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 86 AIIVYDITNQA---SFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 86 ~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
+|+|||+.+.+ .+..+...+..+.+. +|+..+.++.+|+|+..
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCC
Confidence 99999999543 334444566666666 58999999999999853
No 217
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.67 E-value=1.3e-15 Score=121.74 Aligned_cols=114 Identities=24% Similarity=0.282 Sum_probs=79.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCcc----ceeeEEEEEEEE--ECCeE-----E-----EEEEEeCCCccc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES----TIGAAFFSQTLA--VNDAT-----V-----KFEIWDTAGQER 71 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~~~~~D~~g~~~ 71 (162)
.+...|+++|..++|||||++++.+......... ++|..+...... ..+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 3456799999999999999999987654432222 233222111100 00111 1 278999999999
Q ss_pred cccchhhhhcCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 72 YHSLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
|..++...+..+|++++|+|+++ +.+++.+.. +.. .++|+++++||+|+.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCc
Confidence 99888888889999999999997 555554432 222 378899999999985
No 218
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.67 E-value=1.1e-15 Score=108.77 Aligned_cols=114 Identities=21% Similarity=0.184 Sum_probs=73.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-------------------------------CCCccceeeEEEEEEEEECCeEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFI-------------------------------EFQESTIGAAFFSQTLAVNDATVK 60 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 60 (162)
+|+++|..++|||||+.+++...-. .+....++.+..... +.....+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~--~~~~~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAK--FETEKYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEE--EeeCCeE
Confidence 5899999999999999999742100 000111222222223 3334578
Q ss_pred EEEEeCCCccccccchhhhhcCCcEEEEEEECCChHH---HH---HHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---FE---RAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 61 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
+.+|||||+..|.......+..+|++++|+|++++.. |. .....+...... ...|+++++||+|+..
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEcccccc
Confidence 9999999998777666666788999999999998521 11 122222222222 2368999999999973
No 219
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.67 E-value=4.9e-16 Score=119.73 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=89.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCC---CCcc--ceeeEEEEE----------------EEEECC------eEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE---FQES--TIGAAFFSQ----------------TLAVND------ATVK 60 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~---~~~~--~~~~~~~~~----------------~~~~~~------~~~~ 60 (162)
++.++|+++|..++|||||++++.+..... +... |+...+... ....++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 567999999999999999999997532211 1111 111111000 000011 1367
Q ss_pred EEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccC--CHHHH
Q 031263 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--TAEAR 138 (162)
Q Consensus 61 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~ 138 (162)
+.+||+||+++|..........+|++++|+|++++....+..+.+..+.... ..|+++++||+|+.+.... ..++.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 9999999999998777777788999999999996431122223333333332 3478999999999653322 12233
Q ss_pred hhhcCC---CCCCeeeccccccc
Q 031263 139 STSLCP---GKWPILYGNLCKNS 158 (162)
Q Consensus 139 ~~~~~~---~~~~~~~~s~~~~~ 158 (162)
+..+.. ..++++++|+.++.
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~ 182 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNA 182 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCC
Confidence 333332 25667776665543
No 220
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.66 E-value=8.4e-16 Score=116.68 Aligned_cols=111 Identities=19% Similarity=0.172 Sum_probs=81.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccc---------cchhhhh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH---------SLAPMYY 80 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~ 80 (162)
..|+++|.||||||||+||+.+.... ....|..+.+..+......+ ..|.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999998766 33456666677777777766 459999999965322 3334447
Q ss_pred cCCcEEEEEEECCChHHHHHHHH-HHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 81 RGAAAAIIVYDITNQASFERAKK-WVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
..+|+++||+|....-+ ..++ ..+.+. . .+.|+++|+||+|-.
T Consensus 82 ~eADvilfvVD~~~Git--~~D~~ia~~Lr-~--~~kpviLvvNK~D~~ 125 (444)
T COG1160 82 EEADVILFVVDGREGIT--PADEEIAKILR-R--SKKPVILVVNKIDNL 125 (444)
T ss_pred HhCCEEEEEEeCCCCCC--HHHHHHHHHHH-h--cCCCEEEEEEcccCc
Confidence 78999999999986422 2222 223333 2 368999999999964
No 221
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.66 E-value=3.3e-15 Score=113.76 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=86.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccch--------hhh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA--------PMY 79 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 79 (162)
.-+|++++|.||||||||+|++++.+-. .+..+..+-+.....+.++| +.+.+.||+|..+..... ...
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 3499999999999999999999998766 34456666677777777777 889999999975543222 233
Q ss_pred hcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCccc
Q 031263 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (162)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~ 132 (162)
+..+|.+++++|.+.+.+-.. ...+. ....+.|+++|.||.|+..+..
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d-~~~~~----~~~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKED-LALIE----LLPKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhh-HHHHH----hcccCCCEEEEEechhcccccc
Confidence 778999999999998521111 11111 2346789999999999976554
No 222
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.65 E-value=2.5e-15 Score=118.78 Aligned_cols=122 Identities=14% Similarity=0.152 Sum_probs=84.3
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhC-CCCCC-------------------CccceeeEEEEEEEEECCeEEEEEEE
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKG-QFIEF-------------------QESTIGAAFFSQTLAVNDATVKFEIW 64 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (162)
.+..+..+|+++|..++|||||+++++.. ..... .....+.+.......++....++.+|
T Consensus 6 ~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inli 85 (527)
T TIGR00503 6 KEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLL 85 (527)
T ss_pred hhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEE
Confidence 34456789999999999999999998641 11100 00112333334445555666899999
Q ss_pred eCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 65 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
||||+..|.......++.+|++++|+|+++... .....++..... .++|+++++||+|+...
T Consensus 86 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 86 DTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDIR 147 (527)
T ss_pred ECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccCC
Confidence 999998888777778899999999999987421 122334333322 46899999999998643
No 223
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.65 E-value=3.9e-15 Score=113.08 Aligned_cols=144 Identities=19% Similarity=0.160 Sum_probs=94.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCC-CCccceeeEEEEEEEEECCeEEEEEEEeCCCccc----------cccch-
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHSLA- 76 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~- 76 (162)
..+||+++|.|++|||||+|++++.+-.- ...+..+.+.....++.++ .++.++||+|..+ |....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence 57999999999999999999999986552 2334444555555555555 6789999999533 22111
Q ss_pred hhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHh----hhcCCCCCCeeec
Q 031263 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARS----TSLCPGKWPILYG 152 (162)
Q Consensus 77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~----~~~~~~~~~~~~~ 152 (162)
...+..++.+++|+|++.+.+ ++.......+... ..+++||.||+|+.+++....++.+ ..+.-..|.....
T Consensus 255 ~~aI~~a~vvllviDa~~~~~-~qD~~ia~~i~~~---g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGIS-EQDLRIAGLIEEA---GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCch-HHHHHHHHHHHHc---CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 123667999999999998754 2223344444443 5679999999999776544444443 3444456644444
Q ss_pred cccccc
Q 031263 153 NLCKNS 158 (162)
Q Consensus 153 s~~~~~ 158 (162)
.|+..+
T Consensus 331 iSA~~~ 336 (444)
T COG1160 331 ISALTG 336 (444)
T ss_pred EEecCC
Confidence 444443
No 224
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.64 E-value=1.2e-14 Score=93.53 Aligned_cols=106 Identities=21% Similarity=0.206 Sum_probs=68.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC-CCccceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------ccchhhhhc
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---------HSLAPMYYR 81 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~ 81 (162)
+|+++|.+|+|||||+|++++..... ...+..+..........++ ..+.++||||...- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 69999999999999999999864432 1112222222234444555 45679999995321 111223347
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeC
Q 031263 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124 (162)
Q Consensus 82 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK 124 (162)
.+|++++|+|.+++.. +....++..+. .+.|+++|.||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999877322 22334444442 57899999998
No 225
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.64 E-value=2.1e-15 Score=110.41 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=77.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCC------------------ccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQ------------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 73 (162)
+|+++|.+|+|||||+++++...-.... ....+.......+.. ....+.+|||||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW--KGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE--CCEEEEEEECcCHHHHH
Confidence 5899999999999999999853211000 001111112222333 34788999999998887
Q ss_pred cchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
..+...++.+|++++|+|+++.........|. .+.. .++|+++++||+|+...
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~---~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE---AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEECCccCCC
Confidence 77788899999999999999865443333332 2322 36799999999998654
No 226
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.64 E-value=3.3e-15 Score=114.82 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=91.1
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCC----------------CCCCccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQF----------------IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 68 (162)
.+.++.++|+++|..++|||||+++|++... ..+..+.++.+ ...+.+.....++.+|||||
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpG 84 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPG 84 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCc
Confidence 3557789999999999999999999984210 00111223333 33344445557889999999
Q ss_pred ccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcCcccCC---HHHHhhhcCC
Q 031263 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVT---AEARSTSLCP 144 (162)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~~---~~~~~~~~~~ 144 (162)
+..|..........+|++++|+|+++... ....+.+..+... .+| +++++||+|+.+..... .++.+..+..
T Consensus 85 h~~f~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~ 160 (394)
T TIGR00485 85 HADYVKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred hHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 98876544555667899999999987421 1112233333333 455 55789999986533221 1234444443
Q ss_pred CC-----CCeeecccccc
Q 031263 145 GK-----WPILYGNLCKN 157 (162)
Q Consensus 145 ~~-----~~~~~~s~~~~ 157 (162)
.+ ++++++|+.++
T Consensus 161 ~~~~~~~~~ii~vSa~~g 178 (394)
T TIGR00485 161 YDFPGDDTPIIRGSALKA 178 (394)
T ss_pred cCCCccCccEEECccccc
Confidence 33 57777776554
No 227
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.64 E-value=2.3e-15 Score=118.94 Aligned_cols=122 Identities=15% Similarity=0.122 Sum_probs=83.6
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCC-C----------------C---CccceeeEEEEEEEEECCeEEEEEEEe
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI-E----------------F---QESTIGAAFFSQTLAVNDATVKFEIWD 65 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~-~----------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~D 65 (162)
.-.+..+|+++|..++|||||.++++...-. . . .....+.........+.....++++||
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD 85 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence 3356789999999999999999999741100 0 0 001112223333344444568899999
Q ss_pred CCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
|||+..|.......++.+|++++|+|+++...- ....++.... ..++|+++++||+|+...+
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~---~~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR---LRDTPIFTFINKLDRDGRE 147 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH---hcCCCEEEEEECCcccccC
Confidence 999999888778889999999999999875321 2233333322 2478999999999986544
No 228
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=9.2e-15 Score=100.49 Aligned_cols=118 Identities=18% Similarity=0.270 Sum_probs=79.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCC----------ccccccchh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG----------QERYHSLAP 77 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~ 77 (162)
....-|+++|.++||||||||++++.+-......|.|.+.....+.+++. +.+.|.|| .+....+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 45579999999999999999999997744334455555554555555552 78999999 233344445
Q ss_pred hhhcC---CcEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCcccC
Q 031263 78 MYYRG---AAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (162)
Q Consensus 78 ~~~~~---~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 133 (162)
.|+.. ..++++++|+..+.. ..+ +.++.+.. .++|++++.||+|..+....
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLE---LGIPVIVVLTKADKLKKSER 153 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCeEEEEEccccCChhHH
Confidence 55544 468888999886422 222 22222333 38899999999999776544
No 229
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.63 E-value=3e-15 Score=115.44 Aligned_cols=148 Identities=16% Similarity=0.096 Sum_probs=85.9
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCC---CCCccceeeEEEE--EEEE----------------EC------Ce
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI---EFQESTIGAAFFS--QTLA----------------VN------DA 57 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~---~~~~~~~~~~~~~--~~~~----------------~~------~~ 57 (162)
..+++.++|+++|..++|||||+.++.+.... .+....++.+... .... .+ ..
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 34567899999999999999999999653111 1111112221111 0100 00 01
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCCh----HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccC
Q 031263 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (162)
Q Consensus 58 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 133 (162)
...+.+||+||+..|..........+|++++|+|++++ .+.+.+ ..+... ...|+++|+||+|+.+....
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l----~~l~~~--~i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL----MALDII--GIKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH----HHHHHc--CCCcEEEEEEeeccccchhH
Confidence 36799999999987765444445567999999999964 222322 222222 22368999999999654322
Q ss_pred C--HHHHhhhcCC---CCCCeeeccccccc
Q 031263 134 T--AEARSTSLCP---GKWPILYGNLCKNS 158 (162)
Q Consensus 134 ~--~~~~~~~~~~---~~~~~~~~s~~~~~ 158 (162)
. .++.+..+.. ..++++.+|+.++.
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~ 187 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKV 187 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCc
Confidence 1 2233333322 24567776665543
No 230
>PRK12735 elongation factor Tu; Reviewed
Probab=99.62 E-value=6.9e-15 Score=113.08 Aligned_cols=146 Identities=16% Similarity=0.175 Sum_probs=88.6
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhC-------CCC---------CCCccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKG-------QFI---------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 69 (162)
..++.++|+++|..++|||||+++|++. .+. .+....++.+ .....+.....++.++||||+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~--~~~~~~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITIN--TSHVEYETANRHYAHVDCPGH 85 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEE--EeeeEEcCCCcEEEEEECCCH
Confidence 4467799999999999999999999962 100 0111222222 233334444567899999999
Q ss_pred cccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEE-EEEeCCCCcCcccC---CHHHHhhhcCCC
Q 031263 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA-LAGNKADLLDARKV---TAEARSTSLCPG 145 (162)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~~~~~~---~~~~~~~~~~~~ 145 (162)
.+|.......+..+|++++|+|+.+... ....+.+..+.. .++|.+ ++.||+|+.+.... ...+.+..+...
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~ 161 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence 8776555566778899999999987421 222233333332 246654 67999999642211 112333333322
Q ss_pred -----CCCeeecccccc
Q 031263 146 -----KWPILYGNLCKN 157 (162)
Q Consensus 146 -----~~~~~~~s~~~~ 157 (162)
.++++++|+-..
T Consensus 162 ~~~~~~~~ii~~Sa~~g 178 (396)
T PRK12735 162 DFPGDDTPIIRGSALKA 178 (396)
T ss_pred CCCcCceeEEecchhcc
Confidence 356677665543
No 231
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.62 E-value=1.2e-14 Score=116.70 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=87.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC---CCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ---FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
-|+++|..++|||||++++.+.. +..+....++.+.....+... ....+.+||+||++.|.......+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 47899999999999999999643 333333444444433333222 12458999999999886666667888999999
Q ss_pred EEECCCh---HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCC--HHHHhhhcCCCC---CCeeecccccc
Q 031263 89 VYDITNQ---ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--AEARSTSLCPGK---WPILYGNLCKN 157 (162)
Q Consensus 89 v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~s~~~~ 157 (162)
|+|++++ .+.+. +..+.... ..++++|+||+|+.++.... .++.+..+...+ .+++.+|+.++
T Consensus 81 VVda~eg~~~qT~eh----l~il~~lg--i~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG 151 (614)
T PRK10512 81 VVACDDGVMAQTREH----LAILQLTG--NPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEG 151 (614)
T ss_pred EEECCCCCcHHHHHH----HHHHHHcC--CCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCC
Confidence 9999873 33332 22222221 23467999999996543222 223334443322 46666665544
No 232
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.62 E-value=2e-14 Score=117.41 Aligned_cols=119 Identities=17% Similarity=0.069 Sum_probs=82.8
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCC-----C-------------CccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE-----F-------------QESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 68 (162)
..+..+|+++|..++|||||+++++...-.. . ....++.+.....+..+ ..++.+|||||
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG 84 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPG 84 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCC
Confidence 3456799999999999999999998521110 0 01223333333344343 47899999999
Q ss_pred ccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
+.++.......++.+|++++|+|+++........ ++..+.. .++|+++++||+|+....
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR---YEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH---cCCCEEEEEECCCCCCCC
Confidence 9888777888899999999999999864443332 2233332 367899999999997543
No 233
>CHL00071 tufA elongation factor Tu
Probab=99.62 E-value=1.2e-14 Score=112.10 Aligned_cols=146 Identities=16% Similarity=0.151 Sum_probs=92.0
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCC----------------CCCccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI----------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 69 (162)
..++.++|+++|..++|||||++++++..-. .+..+.++.+ .....+.....++.+.||||+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~--~~~~~~~~~~~~~~~iDtPGh 85 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITIN--TAHVEYETENRHYAHVDCPGH 85 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEE--ccEEEEccCCeEEEEEECCCh
Confidence 4567799999999999999999999974111 0111222222 222334444567899999999
Q ss_pred cccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcCcccCC---HHHHhhhcCCC
Q 031263 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVT---AEARSTSLCPG 145 (162)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~~---~~~~~~~~~~~ 145 (162)
..|.......+..+|++++|+|+.+... ....+.+..+... ++| ++++.||+|+.+..... .++....+...
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~ 161 (409)
T CHL00071 86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKY 161 (409)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 8776666666788999999999986422 2223333333333 457 77899999996533211 12333333322
Q ss_pred -----CCCeeecccccc
Q 031263 146 -----KWPILYGNLCKN 157 (162)
Q Consensus 146 -----~~~~~~~s~~~~ 157 (162)
.+++++.|+-.+
T Consensus 162 ~~~~~~~~ii~~Sa~~g 178 (409)
T CHL00071 162 DFPGDDIPIVSGSALLA 178 (409)
T ss_pred CCCCCcceEEEcchhhc
Confidence 356777666554
No 234
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.62 E-value=4.9e-15 Score=103.86 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=69.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceee---EEEEEEEEECCeEEEEEEEeCCCccccccchhhh-----hc
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGA---AFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY-----YR 81 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-----~~ 81 (162)
++||+++|.+|+|||||+|++.+.........+.+. +...... .......+.+||+||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPY-PHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceee-ecCCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999999986554322222221 0000011 11112468999999975433222223 56
Q ss_pred CCcEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 82 GAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 82 ~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
.+|.++++.+. +|.+.. .|+..+... ..|+++|+||+|+.
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~ 120 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRD 120 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccch
Confidence 78888887432 244443 455555544 56899999999984
No 235
>PRK12736 elongation factor Tu; Reviewed
Probab=99.62 E-value=8.8e-15 Score=112.44 Aligned_cols=146 Identities=17% Similarity=0.182 Sum_probs=90.6
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCC----------------CCCccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI----------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 69 (162)
..++.++|+++|..++|||||++++++.... .+....++.+ .....+.....++.++||||+
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~--~~~~~~~~~~~~i~~iDtPGh 85 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITIN--TAHVEYETEKRHYAHVDCPGH 85 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEE--EEeeEecCCCcEEEEEECCCH
Confidence 3466799999999999999999999863210 0011222222 333334445568899999999
Q ss_pred cccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcCcccCC---HHHHhhhcCCC
Q 031263 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVT---AEARSTSLCPG 145 (162)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~~---~~~~~~~~~~~ 145 (162)
.+|.......+..+|++++|+|+++... ....+.+..+... ++| +++++||+|+.+..... .++.+..+...
T Consensus 86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~ 161 (394)
T PRK12736 86 ADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHh
Confidence 8876555555677899999999987421 1222333333333 456 77899999986432221 12333443333
Q ss_pred C-----CCeeecccccc
Q 031263 146 K-----WPILYGNLCKN 157 (162)
Q Consensus 146 ~-----~~~~~~s~~~~ 157 (162)
+ .+++.+|+-++
T Consensus 162 ~~~~~~~~ii~vSa~~g 178 (394)
T PRK12736 162 DFPGDDIPVIRGSALKA 178 (394)
T ss_pred CCCcCCccEEEeecccc
Confidence 3 46777776654
No 236
>PLN03126 Elongation factor Tu; Provisional
Probab=99.61 E-value=1e-14 Score=114.06 Aligned_cols=119 Identities=18% Similarity=0.158 Sum_probs=80.7
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCC------C----------CCCCccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQ------F----------IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 68 (162)
+..++.++|+++|..++|||||+++|++.. . ..+....++.+. ....+.....++.++|+||
T Consensus 76 ~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~--~~~~~~~~~~~i~liDtPG 153 (478)
T PLN03126 76 ERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINT--ATVEYETENRHYAHVDCPG 153 (478)
T ss_pred hccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEE--EEEEEecCCcEEEEEECCC
Confidence 345678999999999999999999999621 1 111122222222 2222333446889999999
Q ss_pred ccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcC
Q 031263 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (162)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~ 129 (162)
+..|.......+..+|++++|+|+.+... ....+++..+... .+| ++++.||+|+..
T Consensus 154 h~~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 154 HADYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV---GVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEecccccC
Confidence 98886666666778999999999987532 2233444444433 456 788999999865
No 237
>PRK13351 elongation factor G; Reviewed
Probab=99.60 E-value=7e-15 Score=120.09 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=83.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCC-------------CCC-----ccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-------------EFQ-----ESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~-------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 69 (162)
....||+++|..++|||||+++++...-. ..+ ...++.......+.. ....+.+|||||+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG~ 83 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW--DNHRINLIDTPGH 83 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE--CCEEEEEEECCCc
Confidence 45689999999999999999999853210 000 011111112223333 3578999999999
Q ss_pred cccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
.+|...+..+++.+|++++|+|++++........| ..+.. .++|+++++||+|+...
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCCC
Confidence 99988888999999999999999987665554444 23332 36799999999998754
No 238
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=1.8e-14 Score=105.39 Aligned_cols=125 Identities=18% Similarity=0.237 Sum_probs=83.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCc-----cccccchh---hhh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ-----ERYHSLAP---MYY 80 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-----~~~~~~~~---~~~ 80 (162)
....|+|.|.||||||||++++.+.+.....+|-.+-......+ .....+++++||||. ++.+.+-. ..+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhf--e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHF--ERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeee--ecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 45789999999999999999999998886555543322223333 334478999999993 11121111 112
Q ss_pred cC-CcEEEEEEECCChH--HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHH
Q 031263 81 RG-AAAAIIVYDITNQA--SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (162)
Q Consensus 81 ~~-~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~ 137 (162)
+. .++++|+||.+... +++.-..++..+...- +.|+++|.||+|..+.......+
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e~~~~~~ 302 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEEKLEEIE 302 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchhHHHHHH
Confidence 22 57899999998643 4455456667776663 38999999999987655444444
No 239
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.56 E-value=6.6e-14 Score=110.87 Aligned_cols=142 Identities=17% Similarity=0.093 Sum_probs=100.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccc------cchhhhh--
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH------SLAPMYY-- 80 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~-- 80 (162)
+..+|+++|+||+|||||+|++++.+.....-|..+.+.....+...+ ..+++.|+||..... ...+.++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 356799999999999999999999887766777777776666665555 568999999964332 3334443
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccccc
Q 031263 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNSN 159 (162)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (162)
..+|+++-|+|+++-++- ...--++.+. +.|++++.|++|..+++.+.....+.. +..+.|+..+++.++.+
T Consensus 80 ~~~D~ivnVvDAtnLeRn---LyltlQLlE~---g~p~ilaLNm~D~A~~~Gi~ID~~~L~-~~LGvPVv~tvA~~g~G 151 (653)
T COG0370 80 GKPDLIVNVVDATNLERN---LYLTLQLLEL---GIPMILALNMIDEAKKRGIRIDIEKLS-KLLGVPVVPTVAKRGEG 151 (653)
T ss_pred CCCCEEEEEcccchHHHH---HHHHHHHHHc---CCCeEEEeccHhhHHhcCCcccHHHHH-HHhCCCEEEEEeecCCC
Confidence 347999999999985432 2222233333 667999999999977666554444432 44688898888777654
No 240
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.55 E-value=1.3e-13 Score=107.26 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=92.6
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCC--C-----------------------------CCCccceeeEEEEEEEEE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF--I-----------------------------EFQESTIGAAFFSQTLAV 54 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~ 54 (162)
..++.++|+++|..++|||||+.+++...- . .+....++.+ .....+
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~--~~~~~~ 80 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITID--IALWKF 80 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEE--EEEEEe
Confidence 356789999999999999999998874210 0 0011122222 222334
Q ss_pred CCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHH-------HHHHHHHHHHHhCCCCC-eEEEEEeCCC
Q 031263 55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFE-------RAKKWVQELQAQGNPNM-VMALAGNKAD 126 (162)
Q Consensus 55 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-piiiv~nK~D 126 (162)
......+.++|+||+.+|.......+..+|++++|+|+++. .|+ ...+.+..+.. ..+ ++++++||+|
T Consensus 81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD 156 (447)
T PLN00043 81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMD 156 (447)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEccc
Confidence 45567899999999999988888888999999999999873 332 22222222222 245 5788999999
Q ss_pred CcCcc--cC----CHHHHhhhcCCCC-----CCeeeccccccc
Q 031263 127 LLDAR--KV----TAEARSTSLCPGK-----WPILYGNLCKNS 158 (162)
Q Consensus 127 ~~~~~--~~----~~~~~~~~~~~~~-----~~~~~~s~~~~~ 158 (162)
+.... .. ..++.+.++...+ ++++++|+-.+.
T Consensus 157 ~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ 199 (447)
T PLN00043 157 ATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGD 199 (447)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccc
Confidence 75211 10 1233444444333 567777665543
No 241
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.55 E-value=3.7e-14 Score=116.14 Aligned_cols=120 Identities=20% Similarity=0.175 Sum_probs=82.0
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhC---------------CCCCC---CccceeeEEEEEEEEECCeEEEEEEEeCC
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKG---------------QFIEF---QESTIGAAFFSQTLAVNDATVKFEIWDTA 67 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 67 (162)
......||+++|..++|||||+++++.. .+... ...|+...........++..+++.+||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 3455689999999999999999999853 11111 11123222223333356667899999999
Q ss_pred CccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
|+..|.......++.+|++++|+|+.+....+....|. .+. ..+.|.++++||+|+..
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~---~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QAL---KENVKPVLFINKVDRLI 152 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHH---HcCCCEEEEEEChhccc
Confidence 99988877788899999999999998743222222222 222 23567789999999853
No 242
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.54 E-value=8.5e-14 Score=90.05 Aligned_cols=102 Identities=25% Similarity=0.344 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCc-cceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
+||+++|+.++|||+|+.++....+...+. ++.+ +..+...+++.++.++++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998777654333 3332 233335567888999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhh
Q 031263 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTS 141 (162)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~ 141 (162)
|+.+++.+++.+ |...+......++|.++++||.|+.+.+.+..++...+
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~~~ 103 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGLEF 103 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHHHH
Confidence 999999998766 88877766556789999999999855445555444433
No 243
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.54 E-value=1.5e-13 Score=107.71 Aligned_cols=120 Identities=23% Similarity=0.206 Sum_probs=76.2
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCC-C------------C--------------------ccceeeEEEEEEEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE-F------------Q--------------------ESTIGAAFFSQTLA 53 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~-~------------~--------------------~~~~~~~~~~~~~~ 53 (162)
.+..++|+++|..++|||||+++++...-.. . . ...++.+.....
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~-- 101 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY-- 101 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE--
Confidence 3567999999999999999999998542110 0 0 011222322222
Q ss_pred ECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 54 VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 54 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
+.....++.++||||+..|.......+..+|++++|+|+++...-. ..+....+.... ..|+++++||+|+.+.+
T Consensus 102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~l~~~lg--~~~iIvvvNKiD~~~~~ 176 (474)
T PRK05124 102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSFIATLLG--IKHLVVAVNKMDLVDYS 176 (474)
T ss_pred eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHHHHHHhC--CCceEEEEEeeccccch
Confidence 3334568899999999888655555578899999999998642111 111111122222 24789999999997533
No 244
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.53 E-value=1e-13 Score=98.91 Aligned_cols=115 Identities=21% Similarity=0.230 Sum_probs=72.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccc-----------------------eeeEEEEEE-------------EEEC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQEST-----------------------IGAAFFSQT-------------LAVN 55 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~~ 55 (162)
||+++|+.++|||||+++|..+.+....... .+.+..... ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999986664311100 000000000 0011
Q ss_pred CeEEEEEEEeCCCccccccchhhhhc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 56 DATVKFEIWDTAGQERYHSLAPMYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 56 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
.....+.++|+||+..|.......+. .+|++++|+|++.+.. .....++..+... ++|+++|.||+|+.++
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~ 153 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPA 153 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCH
Confidence 12357899999999887644444443 5899999999886532 2223444444433 5789999999998654
No 245
>PRK00049 elongation factor Tu; Reviewed
Probab=99.53 E-value=2.5e-13 Score=104.52 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=79.6
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCC----------------CCCccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI----------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 69 (162)
..++.++|+++|..++|||||+++|++.... .+..+.++.+ .....+.....++.+.||||+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~ 85 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN--TAHVEYETEKRHYAHVDCPGH 85 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe--eeEEEEcCCCeEEEEEECCCH
Confidence 3467899999999999999999999973110 0112223333 333334444567899999999
Q ss_pred cccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEE-EEEeCCCCcC
Q 031263 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA-LAGNKADLLD 129 (162)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~~ 129 (162)
.+|.......+..+|++++|+|++++.. ....+++..+... ++|.+ ++.||+|+.+
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcc
Confidence 8776555666788999999999987422 2223344444433 46765 6899999964
No 246
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.53 E-value=4.4e-14 Score=102.42 Aligned_cols=120 Identities=16% Similarity=0.182 Sum_probs=83.5
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcc------ccc------
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE------RYH------ 73 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~------~~~------ 73 (162)
+..+.++|++||.||+|||||.|.+++.+..+......+... ...-.......++.++||||.- ++.
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~-~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRH-RILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceee-eeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 346789999999999999999999999998876655544332 2222244556899999999931 111
Q ss_pred cchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
+.....+..+|.+++++|+++..... -...+..+..+ .++|-++|.||+|...
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l-~p~vl~~l~~y--s~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPL-HPRVLHMLEEY--SKIPSILVMNKIDKLK 199 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCcc-ChHHHHHHHHH--hcCCceeeccchhcch
Confidence 12223456699999999999632111 12445555555 4889999999999754
No 247
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.51 E-value=6.8e-14 Score=92.11 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcc----ccccchhhhhcCCcEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----RYHSLAPMYYRGAAAA 86 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~ 86 (162)
-||+++|+.++|||||+++|.+.+.. +..|..+.+ .+ .++||||.. .+.......-.++|.+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~~-------~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V 67 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIEY-------YD-----NTIDTPGEYIENPRFYHALIVTAQDADVV 67 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC--cCccceeEe-------cc-----cEEECChhheeCHHHHHHHHHHHhhCCEE
Confidence 38999999999999999999987652 333333222 11 358999952 2222222334579999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+++.|++++.+... ..+... -+.|++-|.||+|+.. .....+.+++++...++.-++..|+.++
T Consensus 68 ~ll~dat~~~~~~p-P~fa~~------f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~ 131 (143)
T PF10662_consen 68 LLLQDATEPRSVFP-PGFASM------FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTG 131 (143)
T ss_pred EEEecCCCCCccCC-chhhcc------cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCC
Confidence 99999998643211 122111 2578999999999973 2334556666666666644444444443
No 248
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.50 E-value=2.3e-13 Score=105.03 Aligned_cols=115 Identities=24% Similarity=0.249 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC--C-------------------------------CCccceeeEEEEEEEEECCe
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFI--E-------------------------------FQESTIGAAFFSQTLAVNDA 57 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~--~-------------------------------~~~~~~~~~~~~~~~~~~~~ 57 (162)
+||+++|..++|||||+++++...-. . +....++.+..... +...
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~--~~~~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRY--FSTD 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEE--EccC
Confidence 58999999999999999999743211 0 00111122222222 2334
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 58 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
..++.++||||+..|.......+..+|++++|+|+.++..- +..+.+..+.... ..++++++||+|+.+.
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~~~~~~~~~--~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRHSYIASLLG--IRHVVLAVNKMDLVDY 148 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHHHHHHHHcC--CCcEEEEEEecccccc
Confidence 46889999999988865555667889999999999865321 1111122222222 3368899999999653
No 249
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.50 E-value=2.1e-13 Score=110.56 Aligned_cols=119 Identities=24% Similarity=0.243 Sum_probs=75.9
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCC-------------C--------------------ccceeeEEEEEEE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-------------Q--------------------ESTIGAAFFSQTL 52 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~-------------~--------------------~~~~~~~~~~~~~ 52 (162)
..+..++|+++|.+++|||||+++++...-.-. . ...++.+.....
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~- 98 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY- 98 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE-
Confidence 345679999999999999999999996421110 0 011111222222
Q ss_pred EECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 53 AVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 53 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
+.....++.++||||+..|.......+..+|++++|+|++++.. ....+.+..+... ...+++++.||+|+.+
T Consensus 99 -~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~--~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 99 -FATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL--GIRHVVLAVNKMDLVD 171 (632)
T ss_pred -EccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh--CCCeEEEEEEeccccc
Confidence 22334678899999998876544556788999999999976422 1112222223323 2357899999999864
No 250
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.50 E-value=6.1e-13 Score=103.60 Aligned_cols=117 Identities=19% Similarity=0.162 Sum_probs=78.0
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhC--CCC-----------------------------CCCccceeeEEEEEEEEE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKG--QFI-----------------------------EFQESTIGAAFFSQTLAV 54 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~ 54 (162)
..++.++|+++|..++|||||+.+++.. ... .+....++.+.. ...+
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~--~~~~ 80 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIA--LWKF 80 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEee--eEEE
Confidence 4567899999999999999999999862 110 011122223322 2234
Q ss_pred CCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEeCCCC
Q 031263 55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---F---ERAKKWVQELQAQGNPNMV-MALAGNKADL 127 (162)
Q Consensus 55 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~ 127 (162)
......+.++|+||+.+|.......+..+|++++|+|+++... | .+..+.+..+... .+| ++++.||+|.
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDD 157 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccc
Confidence 4456789999999999887777777889999999999987521 1 1222222223333 444 7889999995
No 251
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.7e-13 Score=104.75 Aligned_cols=152 Identities=19% Similarity=0.219 Sum_probs=94.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCC-CCccceeeEEEEEEEEECCeEEEEEEEeCCCccc-ccc--------chh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHS--------LAP 77 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~--------~~~ 77 (162)
+..++|+++|.||+|||||+|.+.+....- ...+..+-|.....++++| +++.+.||+|-.+ -.. -..
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence 445899999999999999999999987653 2334444444444555555 8999999999644 111 112
Q ss_pred hhhcCCcEEEEEEEC--CChHHHHHHHHHHHHHHHhC------CCCCeEEEEEeCCCCcCc-ccCCHHHHhhhcC---CC
Q 031263 78 MYYRGAAAAIIVYDI--TNQASFERAKKWVQELQAQG------NPNMVMALAGNKADLLDA-RKVTAEARSTSLC---PG 145 (162)
Q Consensus 78 ~~~~~~~~~i~v~d~--~~~~s~~~~~~~~~~~~~~~------~~~~piiiv~nK~D~~~~-~~~~~~~~~~~~~---~~ 145 (162)
..++.+|.+++|+|+ ++-++-..+.+.+....... ....|++++.||.|+..+ ++... ....+.. -.
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~-~~~~~~~~~~~~ 422 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK-IPVVYPSAEGRS 422 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC-CceeccccccCc
Confidence 336679999999999 33233233334444433221 235789999999999654 22211 1111111 12
Q ss_pred CCCeeeccccccccCCC
Q 031263 146 KWPILYGNLCKNSNQCE 162 (162)
Q Consensus 146 ~~~~~~~s~~~~~~~~~ 162 (162)
.+++....+|+....|+
T Consensus 423 ~~~i~~~vs~~tkeg~~ 439 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEGCE 439 (531)
T ss_pred ccceEEEeeechhhhHH
Confidence 45666667777776663
No 252
>COG2262 HflX GTPases [General function prediction only]
Probab=99.48 E-value=1.8e-12 Score=97.45 Aligned_cols=123 Identities=22% Similarity=0.229 Sum_probs=85.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc--cccchhhh------
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--YHSLAPMY------ 79 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~~~~------ 79 (162)
..-..|.++|..|+|||||+|++.+........--.+.+.....+...+ ...+.+-||-|.=+ -..+...|
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 3457899999999999999999998765532222222233345555543 46788999999421 11121221
Q ss_pred hcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
...+|.++.|+|+++|...+.+..-..-+......++|+++|.||+|+....
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~ 320 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDE 320 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCch
Confidence 4568999999999999877777766666766666779999999999986433
No 253
>PRK12739 elongation factor G; Reviewed
Probab=99.48 E-value=7.9e-13 Score=108.10 Aligned_cols=117 Identities=17% Similarity=0.127 Sum_probs=81.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCC--C----------------CCccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI--E----------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 69 (162)
.+..+|+++|..++|||||+++++...-. . +..+.++.+.....+..+ ..++.++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCH
Confidence 45689999999999999999999852110 0 012223333333334343 478999999999
Q ss_pred cccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
..+...+...++.+|++++|+|+.+...-.. ...+..+.. .++|++++.||+|+...
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 8887778888999999999999987633222 223333333 35788999999999753
No 254
>PLN03127 Elongation factor Tu; Provisional
Probab=99.48 E-value=7.1e-13 Score=103.16 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=77.2
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhC------CC----------CCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKG------QF----------IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 70 (162)
.++.++|+++|..++|||||++++.+. .. ..+..+.++.+ .....+.....++.+.||||+.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA--TAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee--eeEEEEcCCCeEEEEEECCCcc
Confidence 456799999999999999999999732 10 01111333333 3333344455788999999998
Q ss_pred ccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcC
Q 031263 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (162)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~ 129 (162)
.|..........+|++++|+|+++... .+..+.+..+... ++| ++++.||+|+.+
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~---gip~iIvviNKiDlv~ 191 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVVFLNKVDVVD 191 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEeeccCC
Confidence 775544555667999999999986421 2223333333333 567 578899999965
No 255
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=3.2e-13 Score=104.33 Aligned_cols=135 Identities=18% Similarity=0.245 Sum_probs=97.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
+..=|++||.-..|||||+..+-...........++.......+..+. ..-.+.|+|||||+.|..|...-..-+|.++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 345689999999999999999999888776666666555555555542 3357899999999999999988778899999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCccc--CCHHHHhhhcCCCCC
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEARSTSLCPGKW 147 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~ 147 (162)
+|++++|.- ..+.++.+......++|++++.||+|+.+... +..+..+.-+.+..|
T Consensus 84 LVVa~dDGv----~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~ 141 (509)
T COG0532 84 LVVAADDGV----MPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEW 141 (509)
T ss_pred EEEEccCCc----chhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhc
Confidence 999999842 12333344444456999999999999964432 333334444455455
No 256
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.47 E-value=4.2e-13 Score=93.97 Aligned_cols=116 Identities=20% Similarity=0.204 Sum_probs=70.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCc--cceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------c---hh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQE--STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------L---AP 77 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~---~~ 77 (162)
++|+++|.+|+|||||+|++++.+...... +..+...........+ .++.++||||-..... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 489999999999999999999876543221 1122222222223334 6899999999543321 1 11
Q ss_pred hhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCc
Q 031263 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDA 130 (162)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~ 130 (162)
....++|++++|+++.+ .+ ......++.+..... .-.+++++.|+.|....
T Consensus 79 ~~~~g~~~illVi~~~~-~t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FT-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG 131 (196)
T ss_pred hcCCCCEEEEEEEECCC-cC-HHHHHHHHHHHHHhChHhHhcEEEEEECccccCC
Confidence 12356899999999876 21 112233333333211 12468888899997543
No 257
>PRK00007 elongation factor G; Reviewed
Probab=99.47 E-value=8.5e-13 Score=107.89 Aligned_cols=119 Identities=18% Similarity=0.123 Sum_probs=80.3
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHh--CCCCC----------------CCccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVK--GQFIE----------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 68 (162)
..+..+|+++|..++|||||+++++. +.... +..+.++.+.....+... ..++.++||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCC
Confidence 34568999999999999999999984 11100 012223333333334343 47899999999
Q ss_pred ccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
+..|.......++.+|++++|+|+.....-.... .+..+... +.|++++.||+|+.+..
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~~---~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADKY---KVPRIAFVNKMDRTGAD 143 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHHc---CCCEEEEEECCCCCCCC
Confidence 9877666667788899999999988753333222 22233333 56889999999997543
No 258
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.46 E-value=6.8e-13 Score=96.70 Aligned_cols=147 Identities=16% Similarity=0.136 Sum_probs=90.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcc----ccccchhhh---hcC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----RYHSLAPMY---YRG 82 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~---~~~ 82 (162)
...|-++|-|++|||||++++.+.+.....++-.+..-..-.+..++ ..++.+-|.||.- ....+-..| ++.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHh
Confidence 34577999999999999999999876532222222211111222222 2349999999942 222222333 566
Q ss_pred CcEEEEEEECCCh---HHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 83 AAAAIIVYDITNQ---ASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 83 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
++..+||+|++.+ .-++++..+..++..+. -.+.|.+||+||+|+.+...-..++....++. -.++..|+.+.
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~--~~V~pvsA~~~ 352 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQN--PHVVPVSAKSG 352 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCC--CcEEEeeeccc
Confidence 8999999999987 77788777777766653 36789999999999852211111223333332 13666666554
Q ss_pred cc
Q 031263 158 SN 159 (162)
Q Consensus 158 ~~ 159 (162)
.+
T Consensus 353 eg 354 (366)
T KOG1489|consen 353 EG 354 (366)
T ss_pred cc
Confidence 43
No 259
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.2e-13 Score=104.49 Aligned_cols=118 Identities=15% Similarity=0.185 Sum_probs=92.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
++.-=|.+||.-..|||||+..|-+..........++.......+... .+-.++|.||||+..|..|...-..-+|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 355678999999999999999999988776665666655566666665 3477899999999999999998888899999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
+|+.+.|.- ..+..+.|......++|++++.||+|..+.
T Consensus 230 LVVAadDGV----mpQT~EaIkhAk~A~VpiVvAinKiDkp~a 268 (683)
T KOG1145|consen 230 LVVAADDGV----MPQTLEAIKHAKSANVPIVVAINKIDKPGA 268 (683)
T ss_pred EEEEccCCc----cHhHHHHHHHHHhcCCCEEEEEeccCCCCC
Confidence 999999842 233444444445579999999999997644
No 260
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.45 E-value=1.7e-12 Score=96.80 Aligned_cols=81 Identities=23% Similarity=0.306 Sum_probs=55.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCC------CCccceeeEEEEEE---------------EEECC-eEEEEEEEeCCCc-
Q 031263 13 LVLLGDVGAGKSSLVLRFVKGQFIE------FQESTIGAAFFSQT---------------LAVND-ATVKFEIWDTAGQ- 69 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~~~~~------~~~~~~~~~~~~~~---------------~~~~~-~~~~~~~~D~~g~- 69 (162)
|+++|.++||||||+|++++..... ...|+.+..+.... ...++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999887532 22344443332110 00122 3478999999997
Q ss_pred ---cccccchhhh---hcCCcEEEEEEECC
Q 031263 70 ---ERYHSLAPMY---YRGAAAAIIVYDIT 93 (162)
Q Consensus 70 ---~~~~~~~~~~---~~~~~~~i~v~d~~ 93 (162)
.++..+...+ ++.+|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4455554443 88999999999997
No 261
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.45 E-value=3.3e-12 Score=94.13 Aligned_cols=125 Identities=11% Similarity=0.068 Sum_probs=72.4
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-ccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchh---hhh--
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAP---MYY-- 80 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~---~~~-- 80 (162)
....++|+++|.+|+||||++|++++....... ..+.+..........+ +.++.++||||..+...... ..+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 356799999999999999999999987653211 1111111111222233 47899999999754322111 111
Q ss_pred ----cCCcEEEEEEECCChHHHHHH-HHHHHHHHHhCC--CCCeEEEEEeCCCCcCcccCC
Q 031263 81 ----RGAAAAIIVYDITNQASFERA-KKWVQELQAQGN--PNMVMALAGNKADLLDARKVT 134 (162)
Q Consensus 81 ----~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~ 134 (162)
.+.|++++|..++.. ++... ...++.+..... --.+++++.|+.|...++..+
T Consensus 113 ~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred HhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 258999999655421 12222 233333333211 224689999999976444333
No 262
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.44 E-value=3.1e-12 Score=92.52 Aligned_cols=123 Identities=14% Similarity=0.110 Sum_probs=72.1
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCc-cceeeEEEEEEEEECCeEEEEEEEeCCCcccccc---c------
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---L------ 75 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~------ 75 (162)
.....++|+|+|.+|+|||||+|++++........ ...+..........++ .++.+|||||-..... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 34567999999999999999999999976543221 1112222222223344 6789999999654310 0
Q ss_pred -hhhhhc--CCcEEEEEEECCChHHHHHH-HHHHHHHHHhCCC--CCeEEEEEeCCCCcCcc
Q 031263 76 -APMYYR--GAAAAIIVYDITNQASFERA-KKWVQELQAQGNP--NMVMALAGNKADLLDAR 131 (162)
Q Consensus 76 -~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~--~~piiiv~nK~D~~~~~ 131 (162)
...++. ..++++++..++.. ++... ...++.+...... -.++++|.||+|...+.
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 112332 46888887655532 11111 2334444332111 24699999999985443
No 263
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.42 E-value=2.1e-12 Score=96.68 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=59.1
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCCh----------HHHHHHHHHHHHHHHhC-CCCCeEEEEEeC
Q 031263 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----------ASFERAKKWVQELQAQG-NPNMVMALAGNK 124 (162)
Q Consensus 56 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~piiiv~nK 124 (162)
.....+.+||++|+...+..|..++.+++++++|+|+++- ..+.+....+..+.... ..++|++|++||
T Consensus 158 ~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK 237 (317)
T cd00066 158 IKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNK 237 (317)
T ss_pred ecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccC
Confidence 3457899999999999999999999999999999999973 45655555555555442 368999999999
Q ss_pred CCCc
Q 031263 125 ADLL 128 (162)
Q Consensus 125 ~D~~ 128 (162)
.|+.
T Consensus 238 ~D~f 241 (317)
T cd00066 238 KDLF 241 (317)
T ss_pred hHHH
Confidence 9974
No 264
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.41 E-value=5.1e-13 Score=95.76 Aligned_cols=119 Identities=19% Similarity=0.339 Sum_probs=82.2
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeE-EEEEEEEECCeEEEEEEEeCCCccc-------cccchhh
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAA-FFSQTLAVNDATVKFEIWDTAGQER-------YHSLAPM 78 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~ 78 (162)
...+++|+++|..|+|||||+|+++.++..+...-..+.+ ........++ -.+.+||+||-.+ +++....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 3568999999999999999999999765543322111111 1111222233 5689999999543 6777788
Q ss_pred hhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
++...|.++++.+..|+. +.--..++.++...+ -+.+++++.|.+|+..
T Consensus 114 ~l~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~-~~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 114 YLPKLDLVLWLIKADDRA-LGTDEDFLRDVIILG-LDKRVLFVVTQADRAE 162 (296)
T ss_pred HhhhccEEEEeccCCCcc-ccCCHHHHHHHHHhc-cCceeEEEEehhhhhc
Confidence 888999999999998863 222235666665553 3478999999999843
No 265
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.39 E-value=5.5e-12 Score=95.20 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=58.4
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCC----------hHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCC
Q 031263 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQAQ-GNPNMVMALAGNKA 125 (162)
Q Consensus 57 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~ 125 (162)
....+.+||.+|+...+..|..++.+++++++|+|+++ ...+.+....+..+... ...++|++|++||.
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 34778999999999999999999999999999999996 23566655555555543 23789999999999
Q ss_pred CCc
Q 031263 126 DLL 128 (162)
Q Consensus 126 D~~ 128 (162)
|+.
T Consensus 262 D~~ 264 (342)
T smart00275 262 DLF 264 (342)
T ss_pred HhH
Confidence 983
No 266
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.8e-12 Score=98.13 Aligned_cols=142 Identities=15% Similarity=0.166 Sum_probs=101.1
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCC----------------CCC----CCccceeeEEEEEEEEECCeEEEEEEEe
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ----------------FIE----FQESTIGAAFFSQTLAVNDATVKFEIWD 65 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~----------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D 65 (162)
.-.++...++|-.|.+|||||-.+++--. +.. .-....|+...+..+++++....+++.|
T Consensus 8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLD 87 (528)
T COG4108 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLD 87 (528)
T ss_pred HHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccC
Confidence 34577899999999999999999887310 000 0011234556677888888889999999
Q ss_pred CCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCH-HHHh----h
Q 031263 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA-EARS----T 140 (162)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~-~~~~----~ 140 (162)
|||+++|..-....+..+|..++|+|+...-.- ..++.+.-....++||+-++||.|+....+.+. .|++ .
T Consensus 88 TPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~----qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i 163 (528)
T COG4108 88 TPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEP----QTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGI 163 (528)
T ss_pred CCCccccchhHHHHHHhhheeeEEEecccCccH----HHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCc
Confidence 999999999999999999999999999975321 222333333347999999999999976655442 2222 2
Q ss_pred hcCCCCCCeee
Q 031263 141 SLCPGKWPILY 151 (162)
Q Consensus 141 ~~~~~~~~~~~ 151 (162)
.+.+..||+-.
T Consensus 164 ~~~PitWPIG~ 174 (528)
T COG4108 164 QCAPITWPIGM 174 (528)
T ss_pred ceecccccccC
Confidence 34567777654
No 267
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.39 E-value=2.4e-12 Score=107.14 Aligned_cols=120 Identities=19% Similarity=0.165 Sum_probs=81.4
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCC--C--------------CCccceeeEEEEEEEEE--------------
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--E--------------FQESTIGAAFFSQTLAV-------------- 54 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~~-------------- 54 (162)
++.....+|+++|..++|||||+++++...-. . +....++.+.....+..
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 34556789999999999999999999864311 0 00111111111112222
Q ss_pred CCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 55 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
.+..+.++++||||+.+|.......++.+|+.++|+|+.+.-.......|.. +. ..++|++++.||+|+.
T Consensus 94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HH---HCCCCEEEEEECCccc
Confidence 2235788999999999998777888899999999999998644333333322 22 3477999999999986
No 268
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.38 E-value=3.9e-12 Score=99.10 Aligned_cols=151 Identities=12% Similarity=0.072 Sum_probs=90.0
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCC---CCCCccceeeEEEEEEE---------------EECC-----------
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF---IEFQESTIGAAFFSQTL---------------AVND----------- 56 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~----------- 56 (162)
.+++.++|.++|.-..|||||+.+|.+... ..+....++.+...... ....
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 457789999999999999999999997433 22222222221111100 0000
Q ss_pred -----eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 57 -----ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 57 -----~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
....+.++|+||++.|-.....-+..+|++++|+|++++....+..+.+..+.... -.+++++.||+|+.+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHH
Confidence 02468999999998886665666778999999999987421122223333333332 34789999999996533
Q ss_pred cCC--HHHHhhhcC---CCCCCeeeccccccc
Q 031263 132 KVT--AEARSTSLC---PGKWPILYGNLCKNS 158 (162)
Q Consensus 132 ~~~--~~~~~~~~~---~~~~~~~~~s~~~~~ 158 (162)
... .++.+.++. ...++++.+|+.+..
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~ 219 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKY 219 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCC
Confidence 221 122222221 235677777766543
No 269
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.2e-12 Score=89.18 Aligned_cols=115 Identities=20% Similarity=0.291 Sum_probs=80.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhc---CCcEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR---GAAAAI 87 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~~~~i 87 (162)
-.|+++|..++|||+|+-++..+.+.... ..+.++...... .. -...++|.||+.+.+.-...+++ .+-++|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv-tSiepn~a~~r~--gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV-TSIEPNEATYRL--GS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCee-eeeccceeeEee--cC--cceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 46999999999999999999998655422 233333222222 11 23789999999999877777777 689999
Q ss_pred EEEECCC-hHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCCcCc
Q 031263 88 IVYDITN-QASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDA 130 (162)
Q Consensus 88 ~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~~ 130 (162)
||+|..- ..-.....+++-.+.... ...+|++|+.||.|+..+
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 9999874 222334444444443332 467899999999999543
No 270
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.37 E-value=4.7e-12 Score=93.26 Aligned_cols=142 Identities=17% Similarity=0.101 Sum_probs=87.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccc--eeeEEEEEEEEECCeEEEEEEEeCCCcc----ccccchh---hhhcC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQEST--IGAAFFSQTLAVNDATVKFEIWDTAGQE----RYHSLAP---MYYRG 82 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~---~~~~~ 82 (162)
-|-++|.|++|||||++.+.+.+.....++- +.++...... .....|.+-|.||.= +-..+-. ..+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 3568999999999999999998766322222 2222223332 223458999999831 1111212 22566
Q ss_pred CcEEEEEEECCChH---HHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeee-ccccc
Q 031263 83 AAAAIIVYDITNQA---SFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILY-GNLCK 156 (162)
Q Consensus 83 ~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~ 156 (162)
+.+++.|+|++..+ -.+.......++..+.. .+.|.+||+||+|+....+..+...+.......|.... .|+.+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 89999999999543 25555666666666532 57899999999997544333333333334455665444 55444
No 271
>PTZ00416 elongation factor 2; Provisional
Probab=99.36 E-value=4.6e-12 Score=105.35 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=78.6
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCC--C--------------CCccceeeEEEEEEEEEC--------CeEEEEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI--E--------------FQESTIGAAFFSQTLAVN--------DATVKFE 62 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~ 62 (162)
.....+|+++|..++|||||+++++...-. . +....++.......+... ++.+.+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 445679999999999999999999963211 0 000111111111122222 2357899
Q ss_pred EEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 63 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
++||||+.+|.......++.+|++++|+|+.++-.-.....| ..+.. .++|++++.||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence 999999998877778888999999999999985332222223 23322 357999999999985
No 272
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.5e-11 Score=92.74 Aligned_cols=152 Identities=22% Similarity=0.219 Sum_probs=94.9
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCC--CCC---------------------------CCccceeeEEEEEEEEECC
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ--FIE---------------------------FQESTIGAAFFSQTLAVND 56 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~ 56 (162)
..++.++++++|...+|||||+-+|+..- +.. ......|.+.......+..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 45678999999999999999999988421 100 0011122333344444555
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHH---H---HHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---F---ERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 57 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
..+.++++|+||+.+|-.....-...+|+.|+|+|+++.+. | .+.++-+-.....+ -..++++.||+|....
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v~w 160 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLVSW 160 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEccccccc
Confidence 56789999999988887666666778999999999998642 1 11122222222232 3458899999999876
Q ss_pred ccCCHHHHhhh----cCCCCC-----Ceeecccccccc
Q 031263 131 RKVTAEARSTS----LCPGKW-----PILYGNLCKNSN 159 (162)
Q Consensus 131 ~~~~~~~~~~~----~~~~~~-----~~~~~s~~~~~~ 159 (162)
++-..++.... ....+| +++.+|.-+..|
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~N 198 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDN 198 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCc
Confidence 65554444322 223333 466666555433
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.36 E-value=9.4e-12 Score=101.65 Aligned_cols=109 Identities=19% Similarity=0.164 Sum_probs=75.4
Q ss_pred EcCCCCCHHHHHHHHHhCCCCC------------------CCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchh
Q 031263 16 LGDVGAGKSSLVLRFVKGQFIE------------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAP 77 (162)
Q Consensus 16 iG~~~~GKssli~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 77 (162)
+|..++|||||+++++...-.. +..+.++.......+... .+.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence 6999999999999996532110 001222333333344343 48899999999988877778
Q ss_pred hhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
..+..+|++++++|+++.........| ..+.. .++|+++|+||+|+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCCCC
Confidence 889999999999999986554443333 22322 36799999999998654
No 274
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.31 E-value=3.6e-11 Score=93.80 Aligned_cols=145 Identities=16% Similarity=0.127 Sum_probs=106.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
+.-++..++|..++|||.|++++++..+...+..+....+....+...+..-.+.+-|.+-. ....+...- ..+|++.
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence 44588999999999999999999999888766677777777777777777777888888754 333333322 6799999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCK 156 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (162)
++||.+++.+|+.+...++.-... ...|+++|+.|+|+....+........++...+.+.....|++
T Consensus 501 ~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~ 567 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSK 567 (625)
T ss_pred EecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccC
Confidence 999999999999887766554444 5889999999999966554333333555666666555545554
No 275
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.30 E-value=9.6e-12 Score=102.34 Aligned_cols=120 Identities=17% Similarity=0.138 Sum_probs=79.0
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCC-----------C-----ccceeeEEEEEEE--EECCeEEEEEEEeC
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-----------Q-----ESTIGAAFFSQTL--AVNDATVKFEIWDT 66 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~-----------~-----~~~~~~~~~~~~~--~~~~~~~~~~~~D~ 66 (162)
.+..+..+|+++|..++|||||+.+++...-... + ...++.+.....+ ..++....+.++||
T Consensus 15 ~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 94 (731)
T PRK07560 15 KNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDT 94 (731)
T ss_pred hchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcC
Confidence 3445667899999999999999999986321100 0 0011111111111 22445688999999
Q ss_pred CCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 67 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
||+.+|.......++.+|++++|+|+.....-.....|.. +... +.|.+++.||+|+.
T Consensus 95 PG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 95 PGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred CCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHHc---CCCeEEEEECchhh
Confidence 9999888777888899999999999987533232233332 2222 35678999999985
No 276
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=4.1e-11 Score=92.98 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=99.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCC-----------C----CCccceeeEEEEEEEEE-CCeEEEEEEEeCCCccc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-----------E----FQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQER 71 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~-----------~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~ 71 (162)
.+-.++.++-.-..|||||..+++...-. + +....+++......+.. +++.+.++++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 34578999999999999999999853210 0 11222333222223322 35669999999999999
Q ss_pred cccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHH--HhhhcCCCCCCe
Q 031263 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA--RSTSLCPGKWPI 149 (162)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~--~~~~~~~~~~~~ 149 (162)
|+......+..|+++++|+|++....-+.+-.++..+ ..+..+|.|.||+|+..++.-..+. .+.+..+ .-.+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf----e~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~-~~~~ 212 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF----EAGLAIIPVLNKIDLPSADPERVENQLFELFDIP-PAEV 212 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH----HcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC-ccce
Confidence 9999998899999999999999876555555555444 2466799999999997665433222 2222222 2267
Q ss_pred eecccccccc
Q 031263 150 LYGNLCKNSN 159 (162)
Q Consensus 150 ~~~s~~~~~~ 159 (162)
+++|+.+..|
T Consensus 213 i~vSAK~G~~ 222 (650)
T KOG0462|consen 213 IYVSAKTGLN 222 (650)
T ss_pred EEEEeccCcc
Confidence 7767665543
No 277
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=8.9e-11 Score=95.22 Aligned_cols=122 Identities=21% Similarity=0.172 Sum_probs=89.1
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCC------------------CCCccceeeEEEEEEEEECCeEEEEEEEeCC
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI------------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 67 (162)
...+..+|.++|.-.+|||||..+++...-. ++....+++......+...+ .+.++++|||
T Consensus 6 ~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTP 84 (697)
T COG0480 6 PLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTP 84 (697)
T ss_pred ccccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCC
Confidence 3567799999999999999999999853111 01112233333333443443 5899999999
Q ss_pred CccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCccc
Q 031263 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (162)
Q Consensus 68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~ 132 (162)
||-+|.......++-+|+.++|+|+...-..+.-..|.+.. ..++|.+++.||+|+...+.
T Consensus 85 GHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~a~~ 145 (697)
T COG0480 85 GHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLGADF 145 (697)
T ss_pred CccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECccccccCh
Confidence 99999999999999999999999999865444445564432 35789999999999965543
No 278
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=1.3e-10 Score=88.97 Aligned_cols=122 Identities=18% Similarity=0.156 Sum_probs=89.4
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCC---------------CCCccceeeEEEEEEEEE---CCeEEEEEEEeCCC
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI---------------EFQESTIGAAFFSQTLAV---NDATVKFEIWDTAG 68 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g 68 (162)
.+...++.++-.-..|||||..|++...-. -+....+++......+.. ++..+.+.++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 345678899999999999999999852111 111233333333333332 45779999999999
Q ss_pred ccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCccc
Q 031263 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (162)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~ 132 (162)
|-+|.......+..|.+.++++|+++.-.-+.+.+.+..+. .+.-++.|.||+|+..++.
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp 145 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP 145 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH
Confidence 99999888888999999999999999866666666655553 4667999999999976544
No 279
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.25 E-value=1.6e-11 Score=92.70 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=58.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceee------EEEEEEEEECCeEEEEEEEeCCCccccccchhhh--
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGA------AFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY-- 79 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-- 79 (162)
..+++|+|+|.+|+|||||||++.+-..........|. ...+.. .+.-++.+||.||.-........|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~----p~~pnv~lWDlPG~gt~~f~~~~Yl~ 108 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH----PKFPNVTLWDLPGIGTPNFPPEEYLK 108 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-----SS-TTEEEEEE--GGGSS--HHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC----CCCCCCeEEeCCCCCCCCCCHHHHHH
Confidence 35789999999999999999999874433222222211 111111 222358999999964333333333
Q ss_pred ---hcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCC
Q 031263 80 ---YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127 (162)
Q Consensus 80 ---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 127 (162)
+...|.+|++.+. .|.....++..-.+. .+.|+++|-+|+|.
T Consensus 109 ~~~~~~yD~fiii~s~----rf~~ndv~La~~i~~--~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSE----RFTENDVQLAKEIQR--MGKKFYFVRTKVDS 153 (376)
T ss_dssp HTTGGG-SEEEEEESS----S--HHHHHHHHHHHH--TT-EEEEEE--HHH
T ss_pred HccccccCEEEEEeCC----CCchhhHHHHHHHHH--cCCcEEEEEecccc
Confidence 4557888887653 355555554443333 36789999999996
No 280
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.25 E-value=3.9e-11 Score=85.02 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=65.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCc--cceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------ch---h
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQE--STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LA---P 77 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~---~ 77 (162)
++|+++|..|+||||++|.+++........ ...+..........++ ..+.++||||-..... +. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999987664332 1222223333335566 7789999999432211 11 1
Q ss_pred hhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCccc
Q 031263 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARK 132 (162)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~ 132 (162)
....+.+++++|+.... -+-.. ...+..+...-. .-..++||.|..|......
T Consensus 79 ~~~~g~ha~llVi~~~r-~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR-FTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT
T ss_pred hccCCCeEEEEEEecCc-chHHH-HHHHHHHHHHccHHHHhHhhHHhhhcccccccc
Confidence 12456899999999883 22111 222222222111 1234777778787655443
No 281
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.22 E-value=9.9e-11 Score=86.12 Aligned_cols=118 Identities=16% Similarity=0.238 Sum_probs=69.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCC----------ccceeeEEEEEEEEECCeEEEEEEEeCCCccc-------
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQER------- 71 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------- 71 (162)
..++|+|+|.+|+|||||+|.|.+....... ..+..+......+.-++..+++.++||||--.
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4689999999999999999999987555332 12333344444555677889999999999211
Q ss_pred -----------cc-------cchhhhh--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 72 -----------YH-------SLAPMYY--RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 72 -----------~~-------~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
|. ...+... ..+|+++++++.+.. .+..++ +..|++. ...+++|.|..|.|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~D--i~~mk~L-s~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLD--IEFMKRL-SKRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHH--HHHHHHH-TTTSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHH--HHHHHHh-cccccEEeEEecccccCH
Confidence 10 0000001 126899999987642 122222 1223333 467899999999998543
No 282
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.21 E-value=5e-11 Score=91.69 Aligned_cols=150 Identities=13% Similarity=0.143 Sum_probs=97.1
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccc-----c--cchh-h
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-----H--SLAP-M 78 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~--~~~~-~ 78 (162)
.+....++++|.++||||||+|.+........+++..+-...... ++.+...++++||||.-+. + .+.. .
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 356688999999999999999999998877555554432222222 3556688999999994211 1 1111 1
Q ss_pred h-hcCCcEEEEEEECCCh--HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHh--hhcCC-CCCCeeec
Q 031263 79 Y-YRGAAAAIIVYDITNQ--ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARS--TSLCP-GKWPILYG 152 (162)
Q Consensus 79 ~-~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~--~~~~~-~~~~~~~~ 152 (162)
. ..--.+++++.|++.. -|..+--.++..|+.. ..+.|+|+|.||+|+.....++++..+ ..+.. ...+++.+
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH-hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 1 1112577888899863 3444444566666555 478899999999999887777766543 33333 33667777
Q ss_pred ccccccc
Q 031263 153 NLCKNSN 159 (162)
Q Consensus 153 s~~~~~~ 159 (162)
|+-+..+
T Consensus 322 S~~~eeg 328 (620)
T KOG1490|consen 322 SCVQEEG 328 (620)
T ss_pred cccchhc
Confidence 7665543
No 283
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.19 E-value=2.5e-10 Score=83.77 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=65.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc-------cccchhhhh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-------YHSLAPMYY 80 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~ 80 (162)
.-..+|+++|.|++|||||++++++.+.....++-.+.+...-.+..++ .++++.|+||.-. .....-...
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence 3457899999999999999999999887755555444444455555544 8999999998311 113344567
Q ss_pred cCCcEEEEEEECCChHH
Q 031263 81 RGAAAAIIVYDITNQAS 97 (162)
Q Consensus 81 ~~~~~~i~v~d~~~~~s 97 (162)
+.||++++|+|+..+.+
T Consensus 139 R~ADlIiiVld~~~~~~ 155 (365)
T COG1163 139 RNADLIIIVLDVFEDPH 155 (365)
T ss_pred ccCCEEEEEEecCCChh
Confidence 89999999999997654
No 284
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.17 E-value=5.4e-10 Score=85.88 Aligned_cols=83 Identities=22% Similarity=0.279 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCc------cceeeEEEEEEE---------------EEC-CeEEEEEEEeCCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQE------STIGAAFFSQTL---------------AVN-DATVKFEIWDTAG 68 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~------~~~~~~~~~~~~---------------~~~-~~~~~~~~~D~~g 68 (162)
++|+++|.+++|||||+|++++........ |+.|..+....+ ..+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999887653222 223322110000 011 2336799999999
Q ss_pred c----cccccchhhh---hcCCcEEEEEEECC
Q 031263 69 Q----ERYHSLAPMY---YRGAAAAIIVYDIT 93 (162)
Q Consensus 69 ~----~~~~~~~~~~---~~~~~~~i~v~d~~ 93 (162)
. .....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3334444455 88899999999997
No 285
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=1e-10 Score=82.12 Aligned_cols=120 Identities=19% Similarity=0.323 Sum_probs=76.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccc-----ccchhhhhcC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-----HSLAPMYYRG 82 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~~~ 82 (162)
..-||+++|.+|+|||++-..+..+-.. +...++-++++.-..+.+-| .+-+.+||++|++.+ .......++.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 4579999999999999997666543221 11112222222122221211 367899999999743 2344566888
Q ss_pred CcEEEEEEECCChHHHHHHHHHH---HHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 83 AAAAIIVYDITNQASFERAKKWV---QELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 83 ~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
.++++++||+..++--..+..+- +.+.++ .|...+++..+|.|+...
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhccc
Confidence 99999999999875434444333 334444 478889999999999643
No 286
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.15 E-value=3.3e-10 Score=86.71 Aligned_cols=142 Identities=20% Similarity=0.237 Sum_probs=97.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC--CCC------------CCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQ--FIE------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 75 (162)
..+|++|-.-..|||||+..++.+. |.. ......|++.-.+.-.++.+.+++++.||||+..|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 4689999999999999999999642 111 11122344555555556667799999999999999999
Q ss_pred hhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHH--Hhhhc------CCCCC
Q 031263 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA--RSTSL------CPGKW 147 (162)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~--~~~~~------~~~~~ 147 (162)
....++=+|++++++|+.+.. +-+.+..++..... ..+-|+|.||+|+..+|.-.... ...+. ....+
T Consensus 85 VERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~---gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL---GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc---CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 999999999999999999742 22223333333333 45567778999998776543222 22222 34677
Q ss_pred Ceeecccc
Q 031263 148 PILYGNLC 155 (162)
Q Consensus 148 ~~~~~s~~ 155 (162)
|+.|.|.-
T Consensus 161 PivYAS~~ 168 (603)
T COG1217 161 PIVYASAR 168 (603)
T ss_pred cEEEeecc
Confidence 88887654
No 287
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.15 E-value=1.6e-10 Score=78.75 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=43.4
Q ss_pred EEEEEeCCCccc----cccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCC
Q 031263 60 KFEIWDTAGQER----YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125 (162)
Q Consensus 60 ~~~~~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~ 125 (162)
.+.++|+||... ...++..++..+|++++|.+++...+-.....|.+..... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 588999999632 3466778889999999999999865444444454444333 33388888884
No 288
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.14 E-value=8.7e-10 Score=78.85 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=68.5
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
..+...|+++|.+++|||||++.+....-........|. ..+ ......++.++||||.- ..+ ....+.+|.+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEE
Confidence 456688999999999999999999865221111111111 111 12245678999999863 222 2335779999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcC
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~ 129 (162)
++++|++....... ..++..+... ..| +++|.||+|+.+
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFK 147 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCC
Confidence 99999986432221 2233333333 345 456999999864
No 289
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=7.7e-10 Score=87.82 Aligned_cols=120 Identities=17% Similarity=0.229 Sum_probs=87.2
Q ss_pred CCCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCc-----------------cceeeEEEEEEE---EECCeEEEEEE
Q 031263 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-----------------STIGAAFFSQTL---AVNDATVKFEI 63 (162)
Q Consensus 4 ~~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~~~ 63 (162)
++...+..+|.++|.-.+|||+|...+.....+..+. ...++.....++ ...++.+-+++
T Consensus 122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni 201 (971)
T KOG0468|consen 122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI 201 (971)
T ss_pred ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence 3456677999999999999999999988765543211 111122122222 22567889999
Q ss_pred EeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCC
Q 031263 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127 (162)
Q Consensus 64 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 127 (162)
.||||+-.|.......++-+|++++++|+.+.-.+.. ...+++. ...+.|++++.||+|+
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikha---iq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHA---IQNRLPIVVVINKVDR 261 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHH---HhccCcEEEEEehhHH
Confidence 9999999998888888999999999999998755443 2333333 3357899999999997
No 290
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.11 E-value=3.8e-09 Score=84.63 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=71.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCcc-ceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------cc---h
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES-TIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-------SL---A 76 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~---~ 76 (162)
...++|+++|.+|+||||++|++++......... ..+..........++ ..+.++||||..... .+ .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 3457999999999999999999999764432221 111111111222333 678999999965431 11 1
Q ss_pred hhhhc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCcC
Q 031263 77 PMYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQGNP--NMVMALAGNKADLLD 129 (162)
Q Consensus 77 ~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piiiv~nK~D~~~ 129 (162)
..++. ++|++++|..++......+-..+++.+.....+ -.-+|||.|..|...
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 12333 479999998876332221223455555443222 234788889998864
No 291
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.10 E-value=1.1e-09 Score=80.53 Aligned_cols=149 Identities=16% Similarity=0.268 Sum_probs=101.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECC--eEEEEEEEeCCCccccccchhhhhcCC--
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND--ATVKFEIWDTAGQERYHSLAPMYYRGA-- 83 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~-- 83 (162)
+..-+|+++|+.++|||||+.++.+.+. ..+..+.++.+-.+..+. ...++.+|-.-|.-.+..+....+...
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ 126 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSL 126 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCc
Confidence 3457899999999999999999998873 334555555555543333 246788999888776665555555443
Q ss_pred --cEEEEEEECCCh-HHHHHHHHHHHHHHHhC------------------------------------------------
Q 031263 84 --AAAIIVYDITNQ-ASFERAKKWVQELQAQG------------------------------------------------ 112 (162)
Q Consensus 84 --~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~------------------------------------------------ 112 (162)
-.+|++.|.+++ .-++.+..|..-+.++.
T Consensus 127 aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de 206 (473)
T KOG3905|consen 127 AETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADE 206 (473)
T ss_pred cceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccc
Confidence 377889999999 45666777776433220
Q ss_pred -------------CCCCeEEEEEeCCCCc----Cccc-------CCHHHHhhhcCCCCCCeeecccccccc
Q 031263 113 -------------NPNMVMALAGNKADLL----DARK-------VTAEARSTSLCPGKWPILYGNLCKNSN 159 (162)
Q Consensus 113 -------------~~~~piiiv~nK~D~~----~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (162)
+-.+|+++|.+|||.. .... .-..-.+.+|-.++-..+++|...+.|
T Consensus 207 ~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KN 277 (473)
T KOG3905|consen 207 HVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKN 277 (473)
T ss_pred ccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccc
Confidence 1248999999999982 2211 112345677778888888877665543
No 292
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.10 E-value=1.8e-09 Score=77.55 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=43.3
Q ss_pred EEEEEEeCCCccc-------------cccchhhhhcC-CcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeC
Q 031263 59 VKFEIWDTAGQER-------------YHSLAPMYYRG-AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124 (162)
Q Consensus 59 ~~~~~~D~~g~~~-------------~~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK 124 (162)
..+.++|+||-.. ...+...|++. .+.+++|+|++..-.-.....+...+. ....|+++|.||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 5789999999632 12345566774 458899998765321111122333332 246789999999
Q ss_pred CCCcCc
Q 031263 125 ADLLDA 130 (162)
Q Consensus 125 ~D~~~~ 130 (162)
+|..++
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998653
No 293
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.10 E-value=6.9e-10 Score=93.42 Aligned_cols=102 Identities=21% Similarity=0.224 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCe----------------EEEEEEEeCCCccccccchhhhhcCCc
Q 031263 21 AGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----------------TVKFEIWDTAGQERYHSLAPMYYRGAA 84 (162)
Q Consensus 21 ~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~D~~g~~~~~~~~~~~~~~~~ 84 (162)
++||||+.++.+..........++.......+..+.. .-.+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 4599999999998877655555554444443333210 113899999999999888777788899
Q ss_pred EEEEEEECCC---hHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 85 AAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 85 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
++++|+|+++ +.+++.+. .+.. .++|+++|+||+|+..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCcc
Confidence 9999999987 44444433 2222 2679999999999853
No 294
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.09 E-value=2.5e-09 Score=83.60 Aligned_cols=96 Identities=19% Similarity=0.395 Sum_probs=66.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECC--eEEEEEEEeCCCccccccchhhhhcC---
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND--ATVKFEIWDTAGQERYHSLAPMYYRG--- 82 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~--- 82 (162)
...-.|+|+|..++|||||+.+|.+.+- +.++.+.+|.+..+..++ ...++.+|-..|...+..+....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~---~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIED---PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCC---CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 4557999999999999999999986543 445666776666553332 23578999998876666655544443
Q ss_pred -CcEEEEEEECCChHHH-HHHHHHHH
Q 031263 83 -AAAAIIVYDITNQASF-ERAKKWVQ 106 (162)
Q Consensus 83 -~~~~i~v~d~~~~~s~-~~~~~~~~ 106 (162)
--.+|+|.|.+.|..+ +.+..|+.
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~ 125 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLS 125 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHH
Confidence 2478889999998654 34555544
No 295
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.08 E-value=3.4e-10 Score=81.87 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=64.8
Q ss_pred cccccchhhhhcCCcEEEEEEECCChH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCC
Q 031263 70 ERYHSLAPMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWP 148 (162)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 148 (162)
++++.+.+.+++++|++++|||++++. ++..+..|+..+.. .++|++||+||+|+...+.+..+..+.+ ...+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 678888889999999999999999877 89999999986654 4789999999999976555544444433 345677
Q ss_pred eeecccccc
Q 031263 149 ILYGNLCKN 157 (162)
Q Consensus 149 ~~~~s~~~~ 157 (162)
++++|+.++
T Consensus 100 v~~~SAktg 108 (245)
T TIGR00157 100 VLMTSSKNQ 108 (245)
T ss_pred EEEEecCCc
Confidence 777665544
No 296
>PRK09866 hypothetical protein; Provisional
Probab=99.07 E-value=2.1e-09 Score=85.80 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=45.7
Q ss_pred EEEEEEeCCCcccc-----ccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 59 VKFEIWDTAGQERY-----HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 59 ~~~~~~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
.++.+.||||...- .......+..+|++++|+|.++..+... ...++.+... ..+.|+++|.||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCC
Confidence 46789999996431 2223346889999999999987432222 2333444433 23469999999999864
No 297
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.05 E-value=1.2e-09 Score=81.71 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=58.8
Q ss_pred EEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCCh----------HHHHHHHHHHHHHHHh-CCCCCeEE
Q 031263 51 TLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----------ASFERAKKWVQELQAQ-GNPNMVMA 119 (162)
Q Consensus 51 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~pii 119 (162)
...+.-+...+.++|.+||..-+.-|...+.++++++||+++++= ..+.+....++.+... ...+++++
T Consensus 187 e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsii 266 (354)
T KOG0082|consen 187 EVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSII 266 (354)
T ss_pred EEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEE
Confidence 334444558999999999988899999999999999999999841 2233333444444443 24789999
Q ss_pred EEEeCCCCcC
Q 031263 120 LAGNKADLLD 129 (162)
Q Consensus 120 iv~nK~D~~~ 129 (162)
|+.||.|+..
T Consensus 267 LFLNK~DLFe 276 (354)
T KOG0082|consen 267 LFLNKKDLFE 276 (354)
T ss_pred EEeecHHHHH
Confidence 9999999843
No 298
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.01 E-value=2.8e-10 Score=88.44 Aligned_cols=145 Identities=18% Similarity=0.307 Sum_probs=111.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
-+.+|+-++|..++|||+|+.+++.+.|.+...+.-+ .+.+.+.+++...-+-+.|-+|... ..|-.++|++|
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavI 100 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVV 100 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhccceE
Confidence 4579999999999999999999999999986665554 3466666888888889999988433 35566899999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCC--cCcccCCHHHHhhhcCCCCCCeeecccccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADL--LDARKVTAEARSTSLCPGKWPILYGNLCKNSN 159 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (162)
|+|...+..+|+.+..+...+..+. ...+|+++++++.-. ..++.+...++++.+.....+.++..+...+.
T Consensus 101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGl 175 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGL 175 (749)
T ss_pred EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhh
Confidence 9999999999999887777665443 367899999987655 34566666777777776666666666665544
No 299
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2e-09 Score=76.27 Aligned_cols=114 Identities=24% Similarity=0.346 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEE--EEEECCeEEEEEEEeCCCccccccch---hhhhcCCcE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ--TLAVNDATVKFEIWDTAGQERYHSLA---PMYYRGAAA 85 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~~---~~~~~~~~~ 85 (162)
-+|+++|...+||||+-+-..+...+. .|.-.+...+ .-.+.+.-++|++||+|||-.+.... ...++++.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPn---eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCC---ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 459999999999999977666554433 2222221111 11123345789999999997665433 455899999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHh--CCCCCeEEEEEeCCCCc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQ--GNPNMVMALAGNKADLL 128 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piiiv~nK~D~~ 128 (162)
+++|+|+.+ +-++.+..+...+.+. .++++.+-++.+|.|-.
T Consensus 105 LifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 105 LIFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred EEEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 999999875 4566666666555553 35889999999999974
No 300
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.98 E-value=2.1e-08 Score=76.62 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=70.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC----CCC-------------CCC-cc---ceeeEE---EEEEEEE-CCeEEEEEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG----QFI-------------EFQ-ES---TIGAAF---FSQTLAV-NDATVKFEI 63 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~----~~~-------------~~~-~~---~~~~~~---~~~~~~~-~~~~~~~~~ 63 (162)
-++-|.++|+.++|||||+|+|++. ... +.. .. |..+.+ ....+.. ++...++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3588999999999999999999987 332 111 11 111112 1222222 445578999
Q ss_pred EeCCCccc--------ccc------c---------------hhhhhc-CCcEEEEEE-ECC--C--hHH-HHHHHHHHHH
Q 031263 64 WDTAGQER--------YHS------L---------------APMYYR-GAAAAIIVY-DIT--N--QAS-FERAKKWVQE 107 (162)
Q Consensus 64 ~D~~g~~~--------~~~------~---------------~~~~~~-~~~~~i~v~-d~~--~--~~s-~~~~~~~~~~ 107 (162)
+||+|-.. -.. . ....+. .++..++|. |.+ + ++. .+.-..|+..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999321 111 0 122233 577777776 654 1 122 2333567777
Q ss_pred HHHhCCCCCeEEEEEeCCCC
Q 031263 108 LQAQGNPNMVMALAGNKADL 127 (162)
Q Consensus 108 ~~~~~~~~~piiiv~nK~D~ 127 (162)
++.. ++|++++.||.|-
T Consensus 176 Lk~~---~kPfiivlN~~dp 192 (492)
T TIGR02836 176 LKEL---NKPFIILLNSTHP 192 (492)
T ss_pred HHhc---CCCEEEEEECcCC
Confidence 7665 7899999999994
No 301
>PTZ00258 GTP-binding protein; Provisional
Probab=98.97 E-value=6.9e-09 Score=79.32 Aligned_cols=86 Identities=20% Similarity=0.108 Sum_probs=56.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCe---------------EEEEEEEeCCCcccc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERY 72 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~ 72 (162)
....+|.++|.|++|||||+|++.+........|..+.+.....+.+... ..++++.|+||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 45689999999999999999999887655433343333322333322211 235899999995321
Q ss_pred ----ccch---hhhhcCCcEEEEEEECC
Q 031263 73 ----HSLA---PMYYRGAAAAIIVYDIT 93 (162)
Q Consensus 73 ----~~~~---~~~~~~~~~~i~v~d~~ 93 (162)
..+. ...++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1111 22367799999999984
No 302
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.96 E-value=8.4e-09 Score=77.03 Aligned_cols=117 Identities=15% Similarity=0.279 Sum_probs=75.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCC----------CccceeeEEEEEEEEECCeEEEEEEEeCCCcccc---cc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEF----------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---HS 74 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---~~ 74 (162)
-..++|+++|..|.|||||+|.|++...... ..+++.+......+.-++..++++++||||.-.+ ..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4579999999999999999999998643322 2344555555556666788899999999993110 11
Q ss_pred chh-----------hh------------hcC--CcEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 75 LAP-----------MY------------YRG--AAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 75 ~~~-----------~~------------~~~--~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
.|. .| +.+ +|++++.+..+. ..+..++ +.+..+ ...+.+|.|+-|.|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~l----s~~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRL----SKRVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHH----hcccCeeeeeeccccC
Confidence 111 11 111 577887777653 2333333 333333 3566789999999985
Q ss_pred C
Q 031263 129 D 129 (162)
Q Consensus 129 ~ 129 (162)
.
T Consensus 176 T 176 (373)
T COG5019 176 T 176 (373)
T ss_pred C
Confidence 4
No 303
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.95 E-value=1e-08 Score=76.25 Aligned_cols=128 Identities=23% Similarity=0.203 Sum_probs=83.7
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCC---------------------------------CCCccceeeEEEEEEEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI---------------------------------EFQESTIGAAFFSQTLA 53 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~ 53 (162)
.+..+|++-+|.-.-||||||-||+...-. .+....++++..+. .
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYR--y 80 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYR--Y 80 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEee--e
Confidence 356799999999999999999999853110 00011122333222 2
Q ss_pred ECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccC
Q 031263 54 VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (162)
Q Consensus 54 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 133 (162)
+.-...+|.+-||||+++|......-..-+|+.|+++|+... -+++.+ -...+...- .=..++++.||+|+.+-.+-
T Consensus 81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTr-RHs~I~sLL-GIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTR-RHSFIASLL-GIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhH-HHHHHHHHh-CCcEEEEEEeeecccccCHH
Confidence 344568999999999999987766666779999999998653 222222 111122211 22358999999999887766
Q ss_pred CHHHHh
Q 031263 134 TAEARS 139 (162)
Q Consensus 134 ~~~~~~ 139 (162)
..++++
T Consensus 158 ~F~~I~ 163 (431)
T COG2895 158 VFEAIV 163 (431)
T ss_pred HHHHHH
Confidence 655554
No 304
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.94 E-value=2.8e-09 Score=78.01 Aligned_cols=81 Identities=20% Similarity=0.095 Sum_probs=52.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCe---------------EEEEEEEeCCCcccc----c
Q 031263 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERY----H 73 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~----~ 73 (162)
|+++|.+++|||||+|++++........|..+.+.....+.+... ...++++|+||...- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999998765433333333322333333322 235999999995321 1
Q ss_pred cchh---hhhcCCcEEEEEEECC
Q 031263 74 SLAP---MYYRGAAAAIIVYDIT 93 (162)
Q Consensus 74 ~~~~---~~~~~~~~~i~v~d~~ 93 (162)
.+.. ..++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1212 2357799999999874
No 305
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.94 E-value=5.5e-09 Score=79.05 Aligned_cols=83 Identities=20% Similarity=0.109 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCe---------------EEEEEEEeCCCcccc---
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERY--- 72 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~--- 72 (162)
++|.++|.|++|||||+|++++........|..+.+.....+.+... ..++.+.|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999997744322233222222222222221 135899999995321
Q ss_pred -ccchh---hhhcCCcEEEEEEECC
Q 031263 73 -HSLAP---MYYRGAAAAIIVYDIT 93 (162)
Q Consensus 73 -~~~~~---~~~~~~~~~i~v~d~~ 93 (162)
..+.. ..++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11112 2367899999999984
No 306
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=4e-08 Score=77.09 Aligned_cols=132 Identities=22% Similarity=0.229 Sum_probs=89.2
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhC--------------------CCC---------CCCccceeeEEEEEEEEECC
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKG--------------------QFI---------EFQESTIGAAFFSQTLAVND 56 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~--------------------~~~---------~~~~~~~~~~~~~~~~~~~~ 56 (162)
..+..+.++++|...+|||||..+++.. +.. ....+..|++-..+...++.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 4457799999999999999999888841 000 00112223334455555666
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHH-------HHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER-------AKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 57 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
....+++.|+||+..|......-...+|+.++|+|++..+ |+. .++....+...+ -..+++++||.|+++
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~-FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGE-FESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVS 329 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcch-hhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccC
Confidence 7788999999998777655555566789999999998642 332 123322333333 446889999999998
Q ss_pred cccCCHHHHhh
Q 031263 130 ARKVTAEARST 140 (162)
Q Consensus 130 ~~~~~~~~~~~ 140 (162)
..+-..+++..
T Consensus 330 Wsq~RF~eIk~ 340 (603)
T KOG0458|consen 330 WSQDRFEEIKN 340 (603)
T ss_pred ccHHHHHHHHH
Confidence 88777777664
No 307
>PRK13768 GTPase; Provisional
Probab=98.88 E-value=1.5e-08 Score=73.75 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=44.5
Q ss_pred EEEEEeCCCcccc---ccchhhhhcC-----CcEEEEEEECCChHHHHHH--HHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 60 KFEIWDTAGQERY---HSLAPMYYRG-----AAAAIIVYDITNQASFERA--KKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 60 ~~~~~D~~g~~~~---~~~~~~~~~~-----~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
.+.+||+||+.+. +..+..+++. .+++++++|++...+.... ..|+...... ..+.|+++|.||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 6899999997653 3333223222 7899999999653322221 2333322222 24789999999999976
Q ss_pred ccc
Q 031263 130 ARK 132 (162)
Q Consensus 130 ~~~ 132 (162)
...
T Consensus 177 ~~~ 179 (253)
T PRK13768 177 EEE 179 (253)
T ss_pred chh
Confidence 543
No 308
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.87 E-value=6.3e-09 Score=69.11 Aligned_cols=54 Identities=26% Similarity=0.311 Sum_probs=39.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 69 (162)
+++++|.+|+|||||+|++.+..... .....+.+.....+..+. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999887653 222233333344444444 5789999995
No 309
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=9.8e-09 Score=73.26 Aligned_cols=131 Identities=15% Similarity=0.196 Sum_probs=95.6
Q ss_pred eEEEEEcCCCC--CHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 11 AKLVLLGDVGA--GKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 11 ~ki~viG~~~~--GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
.-+++.|-+++ ||.+++.++....+.....+.....+..+++...+....+.+-=.+--+++............++++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm 84 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM 84 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence 45789999998 9999999999999987666666667777777655544444444344444555444444556789999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcC
Q 031263 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLC 143 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~ 143 (162)
+||.+....+..+..|+.+-...... .++.+|||.|++.+.-...+..+..++
T Consensus 85 vfdlse~s~l~alqdwl~htdinsfd--illcignkvdrvphhlahdeyrrrl~k 137 (418)
T KOG4273|consen 85 VFDLSEKSGLDALQDWLPHTDINSFD--ILLCIGNKVDRVPHHLAHDEYRRRLAK 137 (418)
T ss_pred EEeccchhhhHHHHhhccccccccch--hheecccccccccchhhhhHHHHHHHh
Confidence 99999999999999998875444222 467789999998777777776665544
No 310
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=2.9e-08 Score=74.56 Aligned_cols=141 Identities=13% Similarity=0.188 Sum_probs=84.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCC---------CCccceeeEEEEEEEEECCeEEEEEEEeCCCccc--------
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE---------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-------- 71 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------- 71 (162)
..++++++|.+|.|||||+|.|+...+.. ....+..+......+.-+|..+++++.||||.-+
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 45999999999999999999988764432 1222444555555555677889999999999311
Q ss_pred -------------c----ccchhhhhc--CCcEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 72 -------------Y----HSLAPMYYR--GAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 72 -------------~----~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
| ..+.+..+. .++++++.+..+- ..+..++ ..++.+ ...+.+|.|+-|.|...+.
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l----~~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKL----SKKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHH----hccccccceeeccccCCHH
Confidence 1 011111122 3677888777653 2233332 333333 3567899999999986543
Q ss_pred cCC--HHHHhhhcCCCCCCeeeccc
Q 031263 132 KVT--AEARSTSLCPGKWPILYGNL 154 (162)
Q Consensus 132 ~~~--~~~~~~~~~~~~~~~~~~s~ 154 (162)
.+. ...+++.+..+..++|....
T Consensus 175 El~~~K~~I~~~i~~~nI~vf~fp~ 199 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEHNIKVFDFPT 199 (366)
T ss_pred HHHHHHHHHHHHHHHcCcceecCCC
Confidence 322 22333444444555544433
No 311
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.86 E-value=2.2e-08 Score=72.30 Aligned_cols=125 Identities=16% Similarity=0.220 Sum_probs=69.6
Q ss_pred CCCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-------ccc---------e-----------------eeEEEE-
Q 031263 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-------EST---------I-----------------GAAFFS- 49 (162)
Q Consensus 4 ~~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~-------~~~---------~-----------------~~~~~~- 49 (162)
++..+++.-|+++|..|+|||||.+||...-..... +|. + |++=..
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 345677899999999999999999998853222111 010 0 000000
Q ss_pred --------------EEEEECCeEEEEEEEeCCCccccc------cchhhhh--cCCcEEEEEEECCC---hHHHHHHHHH
Q 031263 50 --------------QTLAVNDATVKFEIWDTAGQERYH------SLAPMYY--RGAAAAIIVYDITN---QASFERAKKW 104 (162)
Q Consensus 50 --------------~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~--~~~~~~i~v~d~~~---~~s~~~~~~~ 104 (162)
..+......+...++|||||-+.. .+....+ ...-.+++++|... +..|-.-.-+
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 000001233568999999984321 1111112 22457777888654 3333222222
Q ss_pred HHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 105 VQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 105 ~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
...+.. ..+.|+|++.||+|+.++
T Consensus 173 AcSily--ktklp~ivvfNK~Dv~d~ 196 (366)
T KOG1532|consen 173 ACSILY--KTKLPFIVVFNKTDVSDS 196 (366)
T ss_pred HHHHHH--hccCCeEEEEeccccccc
Confidence 222222 368999999999999664
No 312
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.85 E-value=2.6e-09 Score=68.15 Aligned_cols=123 Identities=21% Similarity=0.191 Sum_probs=72.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccch----hhhhcCCcEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA----PMYYRGAAAAI 87 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----~~~~~~~~~~i 87 (162)
|++++|..|+|||||.+++.++... +..|..+++ +.+ -.+||||...-+..+ .....+++.++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~-------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEF-------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccceeec-------cCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7999999999999999999987543 223332222 221 156999853323333 23356789999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcC-CCCCCeeeccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLC-PGKWPILYGNLCK 156 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~ 156 (162)
++-++++++|.-.- . +..- -..|+|=|.+|.|+.+...+ ...+.++. ...-++|+.++-.
T Consensus 70 ~v~~and~~s~f~p-~----f~~~--~~k~vIgvVTK~DLaed~dI--~~~~~~L~eaGa~~IF~~s~~d 130 (148)
T COG4917 70 YVHAANDPESRFPP-G----FLDI--GVKKVIGVVTKADLAEDADI--SLVKRWLREAGAEPIFETSAVD 130 (148)
T ss_pred eeecccCccccCCc-c----cccc--cccceEEEEecccccchHhH--HHHHHHHHHcCCcceEEEeccC
Confidence 99999987552110 1 1111 23458888999999753333 33334443 3333555555443
No 313
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.85 E-value=1.1e-08 Score=70.10 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=40.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 68 (162)
...++++++|.+++|||||+|++.+...... .+..|.+........+ ..+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLD---KKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeC---CCEEEEECcC
Confidence 3458999999999999999999998766432 2233334333343333 2578999998
No 314
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.81 E-value=1.9e-08 Score=67.96 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=38.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 68 (162)
..++|+++|.+|+|||||+|++.+...... .+..|.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 467899999999999999999998765432 22233333333333322 368999998
No 315
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.79 E-value=2.4e-08 Score=68.42 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=41.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 69 (162)
+..++++++|.+++|||||+|++.+..+.. ..+..+.+........+ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 445899999999999999999999877642 22333334444444443 35789999994
No 316
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=4.5e-08 Score=69.45 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=69.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCC---------CCccceeeEEEEEEEEECCeEEEEEEEeCCCccc---cccch
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE---------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER---YHSLA 76 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---~~~~~ 76 (162)
..++|+|+|.+|.|||||+|.+....... ....|..+......+.-++-.++++++||||--+ ...+|
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 45899999999999999999988654332 1122333333344444567778999999999311 01111
Q ss_pred h-----------hh------------hcC--CcEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 77 P-----------MY------------YRG--AAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 77 ~-----------~~------------~~~--~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
. .| +.+ ++.+++.+..+ ..++..++ ++++.+.. -+.++-|+-|.|..
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~----vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE----VVNVVPVIAKADTL 197 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh----hheeeeeEeecccc
Confidence 1 11 122 45666666655 34555544 55555543 34577788899963
No 317
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.77 E-value=3.4e-08 Score=66.62 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=40.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 69 (162)
...+++++|.+++||||++|++.+.... ...++.+.+.....+..++ .+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence 4678999999999999999999976533 2445555544333333333 6899999983
No 318
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.77 E-value=1.6e-07 Score=67.17 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=64.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc-------cccchhhhh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-------YHSLAPMYY 80 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~ 80 (162)
.-..+|+++|-|++|||||+..+...........-.+.+..+-.+..++ .++++.|.||.-+ ..+......
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEe
Confidence 3468999999999999999999998766544444444455566666665 7889999999421 122333446
Q ss_pred cCCcEEEEEEECCChHHHH
Q 031263 81 RGAAAAIIVYDITNQASFE 99 (162)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~ 99 (162)
+-+|.++++.|++..+.-.
T Consensus 138 rtaDlilMvLDatk~e~qr 156 (364)
T KOG1486|consen 138 RTADLILMVLDATKSEDQR 156 (364)
T ss_pred ecccEEEEEecCCcchhHH
Confidence 7799999999999865444
No 319
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.77 E-value=1.5e-08 Score=72.94 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=38.0
Q ss_pred EEEEEeCCCccccccchhhhh--------cCCcEEEEEEECC---ChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 60 KFEIWDTAGQERYHSLAPMYY--------RGAAAAIIVYDIT---NQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 60 ~~~~~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
.+.++|||||-++...+.... ...-++++++|.. ++..|-. .++..+.....-..|.+.|.||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 689999999988766555443 3455788888877 3433332 22333222222478999999999997
Q ss_pred C
Q 031263 129 D 129 (162)
Q Consensus 129 ~ 129 (162)
.
T Consensus 170 ~ 170 (238)
T PF03029_consen 170 S 170 (238)
T ss_dssp -
T ss_pred c
Confidence 6
No 320
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=9.7e-08 Score=71.09 Aligned_cols=119 Identities=21% Similarity=0.204 Sum_probs=73.2
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhC-------CCCCCCccceeeEEEEEEEEE-------CCeEEEEEEEeCCCccc
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKG-------QFIEFQESTIGAAFFSQTLAV-------NDATVKFEIWDTAGQER 71 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~D~~g~~~ 71 (162)
..+.++++-++|.-.+|||+|.+++..- +.++.....++.+..-..+.+ .+..+++.+.|+||+..
T Consensus 3 ~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas 82 (522)
T KOG0461|consen 3 SPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS 82 (522)
T ss_pred CCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH
Confidence 3455699999999999999999999853 223333344445544443333 33457899999999965
Q ss_pred cccchhhhhcCCcEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
.-+....-..-.|..++|+|+.....-.... -.+..+ .....++|.||+|...
T Consensus 83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-----~c~klvvvinkid~lp 136 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-----LCKKLVVVINKIDVLP 136 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-----hccceEEEEecccccc
Confidence 4322222223358899999998643221111 122222 2334778889998743
No 321
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2.2e-08 Score=72.89 Aligned_cols=147 Identities=16% Similarity=0.206 Sum_probs=88.1
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhC----------CCCCC----CccceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKG----------QFIEF----QESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 71 (162)
..++.++|..||.-..|||||..++... .|.+- .....|++.....+...-....+...|+||+.+
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 3467899999999999999998777641 11110 011223344455555555567788999999988
Q ss_pred cccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC-eEEEEEeCCCCcCcccC---CHHHHhhhcCCCCC
Q 031263 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNM-VMALAGNKADLLDARKV---TAEARSTSLCPGKW 147 (162)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~ 147 (162)
|-..-..-.-.+|+.|+|++++|.. +....+++.-...-.+ -++++.||+|+.+.+.. .+.+.++.+...++
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGp----mPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGP----MPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCC----CCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 8654444455689999999999842 1222222222112244 47778999999864332 22334444444333
Q ss_pred -----Ceeeccccc
Q 031263 148 -----PILYGNLCK 156 (162)
Q Consensus 148 -----~~~~~s~~~ 156 (162)
|++..|+.+
T Consensus 164 ~gd~~Pii~gSal~ 177 (394)
T COG0050 164 PGDDTPIIRGSALK 177 (394)
T ss_pred CCCCcceeechhhh
Confidence 455544443
No 322
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=3.5e-08 Score=79.49 Aligned_cols=116 Identities=23% Similarity=0.276 Sum_probs=77.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccc----eeeEEEEEE--------EEECC----eEEEEEEEeCCCcccc
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST----IGAAFFSQT--------LAVND----ATVKFEIWDTAGQERY 72 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~----~~~~~~~~~--------~~~~~----~~~~~~~~D~~g~~~~ 72 (162)
+..=++|+|...+|||-|+..+.+.+.......+ +|.+|.... +..++ +---+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 4455899999999999999999876554322222 222332221 00111 1234789999999999
Q ss_pred ccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
..+......-||.+|+|+|+-..-. ...+..|.-....++|+||+.||+|+.
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGle----pqtiESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLE----PQTIESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCC----cchhHHHHHHHhcCCCeEEeehhhhhh
Confidence 9998888888999999999985311 122222222334689999999999984
No 323
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.72 E-value=5.5e-08 Score=71.64 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=41.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 69 (162)
...++++++|.+|+|||||+|++.+...... .+..|.+.....+..+. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 3468999999999999999999998765432 22333344344444433 5789999997
No 324
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.72 E-value=7.2e-08 Score=71.42 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=42.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 70 (162)
...++++++|.++||||||+|++.+...... .+..|.+.....+..+. .+.++||||.-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 3568999999999999999999998765432 23334444444444433 57899999963
No 325
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.69 E-value=4.7e-08 Score=73.43 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=45.9
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 69 (162)
..+.+++.++|.++||||||||++.+..... ..+..|.+.....+..+. .+.++||||-
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~-~s~~PG~Tk~~q~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAK-TSNRPGTTKGIQWIKLDD---GIYLLDTPGI 187 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhccccee-eCCCCceecceEEEEcCC---CeEEecCCCc
Confidence 3456899999999999999999999987754 334446666666666655 3889999995
No 326
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.69 E-value=7.1e-08 Score=68.14 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=22.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
....|+++|..|+|||||+++++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998864
No 327
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.67 E-value=6e-08 Score=67.53 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=37.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC-------CCccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE-------FQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 68 (162)
..+++++|.+|+|||||+|++.+..... ......|.+.....+..+. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 4689999999999999999999864321 1122223333344444433 578999998
No 328
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.66 E-value=2.6e-07 Score=69.47 Aligned_cols=62 Identities=13% Similarity=0.001 Sum_probs=39.6
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 58 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
++.+.++||+|..+-.. .....+|.++++.+...++.+..++. .+... .-++|.||+|+...
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~-----aDIiVVNKaDl~~~ 209 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK---GIMEL-----ADLIVINKADGDNK 209 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh---hhhhh-----hheEEeehhcccch
Confidence 47889999999753322 24566999999977555555544332 11111 13789999998653
No 329
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.66 E-value=2.5e-07 Score=65.01 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+++|.++|..|+|||||++++.+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999988864
No 330
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1e-07 Score=70.32 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=88.7
Q ss_pred CCCCCCcccceEEEEEcCCCCCHHHHHHHHHhCCCC---CCCccceeeEEEEEEE------------------EEC----
Q 031263 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI---EFQESTIGAAFFSQTL------------------AVN---- 55 (162)
Q Consensus 1 m~~~~~~~~~~ki~viG~~~~GKssli~~~~~~~~~---~~~~~~~~~~~~~~~~------------------~~~---- 55 (162)
|+.....++.++|-++|.-..|||||..++.+--.. .+....+++...+... .-.
T Consensus 1 m~~~~~~Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~ 80 (415)
T COG5257 1 MADPKHIQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGA 80 (415)
T ss_pred CCccccCCcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCC
Confidence 333344478999999999999999999999863211 1111111111111100 000
Q ss_pred --CeEEEEEEEeCCCccccccchhhhhcC---CcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 56 --DATVKFEIWDTAGQERYHSLAPMYYRG---AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 56 --~~~~~~~~~D~~g~~~~~~~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
.-...+.|.|.||++-.- ..++.+ .|+.++|++++.+.-.-+.++-+-.+.-.+ -..++++-||+|++.+
T Consensus 81 ~~~l~R~VSfVDaPGHe~LM---ATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~ 155 (415)
T COG5257 81 ETELVRRVSFVDAPGHETLM---ATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSR 155 (415)
T ss_pred CccEEEEEEEeeCCchHHHH---HHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecH
Confidence 123678999999997643 333444 589999999997532222333333333332 3469999999999754
Q ss_pred ccCC--HHHHhhhcC---CCCCCeeeccccccc
Q 031263 131 RKVT--AEARSTSLC---PGKWPILYGNLCKNS 158 (162)
Q Consensus 131 ~~~~--~~~~~~~~~---~~~~~~~~~s~~~~~ 158 (162)
.... -++++++++ +.+-|++..|+...-
T Consensus 156 E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~ 188 (415)
T COG5257 156 ERALENYEQIKEFVKGTVAENAPIIPISAQHKA 188 (415)
T ss_pred HHHHHHHHHHHHHhcccccCCCceeeehhhhcc
Confidence 3322 233344443 345577777766543
No 331
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=2.8e-07 Score=69.26 Aligned_cols=120 Identities=14% Similarity=0.256 Sum_probs=73.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-ccceeeEEEEEEEEEC------Ce-------------------------
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIGAAFFSQTLAVN------DA------------------------- 57 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~------------------------- 57 (162)
.-=|+++|.=+.||||||+-++..+|+... .+..+.++....+..+ |.
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 445899999999999999999999887321 2223333433333221 10
Q ss_pred --------EEEEEEEeCCCc-----------cccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeE
Q 031263 58 --------TVKFEIWDTAGQ-----------ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVM 118 (162)
Q Consensus 58 --------~~~~~~~D~~g~-----------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi 118 (162)
--.++++||||. ..|.....=+...+|.|+++||...-+ -.+++-..+....+..=.+
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD---IsdEf~~vi~aLkG~Edki 214 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD---ISDEFKRVIDALKGHEDKI 214 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc---ccHHHHHHHHHhhCCccee
Confidence 015789999993 123344445567799999999987532 2233333333333333346
Q ss_pred EEEEeCCCCcCccc
Q 031263 119 ALAGNKADLLDARK 132 (162)
Q Consensus 119 iiv~nK~D~~~~~~ 132 (162)
=+|.||.|.++..+
T Consensus 215 RVVLNKADqVdtqq 228 (532)
T KOG1954|consen 215 RVVLNKADQVDTQQ 228 (532)
T ss_pred EEEeccccccCHHH
Confidence 67789999866444
No 332
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=1.8e-07 Score=73.78 Aligned_cols=133 Identities=19% Similarity=0.205 Sum_probs=85.9
Q ss_pred CCCCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q 031263 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82 (162)
Q Consensus 3 ~~~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 82 (162)
++...++++=|+++|++|+|||||++.+...-... ++.......++ +.++..++++.++| ...+++.. ..+-
T Consensus 62 tp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~----ti~~i~GPiTv-vsgK~RRiTflEcp--~Dl~~miD-vaKI 133 (1077)
T COG5192 62 TPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ----TIDEIRGPITV-VSGKTRRITFLECP--SDLHQMID-VAKI 133 (1077)
T ss_pred CcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHh----hhhccCCceEE-eecceeEEEEEeCh--HHHHHHHh-HHHh
Confidence 34566788999999999999999998887642221 11111122222 57788999999998 33444433 2355
Q ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCC
Q 031263 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKW 147 (162)
Q Consensus 83 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 147 (162)
+|.+++++|.+=.-.++. .+++.-+..++.| .++-|.+..|+.. .+-...+++..+..+.|
T Consensus 134 aDLVlLlIdgnfGfEMET-mEFLnil~~HGmP--rvlgV~ThlDlfk-~~stLr~~KKrlkhRfW 194 (1077)
T COG5192 134 ADLVLLLIDGNFGFEMET-MEFLNILISHGMP--RVLGVVTHLDLFK-NPSTLRSIKKRLKHRFW 194 (1077)
T ss_pred hheeEEEeccccCceehH-HHHHHHHhhcCCC--ceEEEEeeccccc-ChHHHHHHHHHHhhhHH
Confidence 899999999885432222 3566666667544 3778889999854 33344555555554444
No 333
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.52 E-value=3.9e-07 Score=61.45 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=38.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCC-CCccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 69 (162)
....+++++|.+++|||||+|++.+..... ...+..+.. ......+ ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~--~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTS--QQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccc--eEEEEec---CCEEEEECCCC
Confidence 456889999999999999999999876432 122222222 2223232 35889999983
No 334
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.52 E-value=2e-07 Score=67.43 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=69.3
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCcc-ceeeEEEEEEEEECCeEEEEEEEeCCC----------cccccc
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES-TIGAAFFSQTLAVNDATVKFEIWDTAG----------QERYHS 74 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~ 74 (162)
.+..+.+++++|.+++|||+|||.+...+....... ..+.+. .++.-.-.-.+.+.|.|| ..+...
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq---~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQ---AINHFHVGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccce---eeeeeeccceEEEEecCCcccccCCccCcchHhH
Confidence 356779999999999999999999998654432222 333221 222222234678999999 234456
Q ss_pred chhhhhcCCcE---EEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 75 LAPMYYRGAAA---AIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 75 ~~~~~~~~~~~---~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
+...|+.+-+- +++++|++-+ +...+ ..++.+. ..++|+.+|.||||...
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~g---e~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLG---ENNVPMTSVFTKCDKQK 262 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHh---hcCCCeEEeeehhhhhh
Confidence 66666655442 3344455532 11111 1111122 25899999999999853
No 335
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=7.9e-07 Score=66.17 Aligned_cols=146 Identities=18% Similarity=0.212 Sum_probs=92.4
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhC----------CCCC----CCccceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKG----------QFIE----FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 71 (162)
.+++.++|--||.-..|||||-.++..- +|.+ ......|++.....+.......++-=.|+||+.+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 4567899999999999999998776631 1110 0112234444456666655566778889999988
Q ss_pred cccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc-CcccCC--HHHHhhhcCCCCC-
Q 031263 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL-DARKVT--AEARSTSLCPGKW- 147 (162)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~-~~~~~~--~~~~~~~~~~~~~- 147 (162)
|-..-..--...|+.|+|+.++|.. +.+.++-+...++-+- ..++++.||.|++ ++..++ +-+.++.+...++
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 8654444455689999999999852 3333444433444432 3588889999997 333332 3445556555444
Q ss_pred ----Ceeeccc
Q 031263 148 ----PILYGNL 154 (162)
Q Consensus 148 ----~~~~~s~ 154 (162)
|++..|+
T Consensus 207 Gd~~PvI~GSA 217 (449)
T KOG0460|consen 207 GDNTPVIRGSA 217 (449)
T ss_pred CCCCCeeecch
Confidence 5555554
No 336
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.47 E-value=5.3e-06 Score=59.37 Aligned_cols=86 Identities=19% Similarity=0.107 Sum_probs=52.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhC--CCCCC---CccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc------ch
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIEF---QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LA 76 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~ 76 (162)
.+..-|.++|.+++|||+|+|++++. .+... ...|.|+-....... .+....+.++||+|...... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhhH
Confidence 34567899999999999999999998 55421 123333222222111 12347899999999654322 11
Q ss_pred hhhhcC--CcEEEEEEECCC
Q 031263 77 PMYYRG--AAAAIIVYDITN 94 (162)
Q Consensus 77 ~~~~~~--~~~~i~v~d~~~ 94 (162)
...+.. ++.+|+..+...
T Consensus 84 ~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 84 LFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHhCEEEEeccCcc
Confidence 222233 677777666554
No 337
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.47 E-value=1.8e-07 Score=63.11 Aligned_cols=60 Identities=25% Similarity=0.259 Sum_probs=33.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC------CCccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 73 (162)
-.++++|.+|||||||+|.+....-.. ........+.....+..+.. -.++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 568999999999999999999863221 11111111222333333332 3688999975543
No 338
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=9.3e-07 Score=71.55 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=79.7
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCC------------C--CCccceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI------------E--FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 71 (162)
+.....+++++-.-..|||||...++...-. + ...-+.|++-.+..+..-.+.+.+.++|+|||-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 4455688999999999999999988853211 1 0112233443444444444668899999999999
Q ss_pred cccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCC
Q 031263 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127 (162)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 127 (162)
|........+-+|++++++|+...-.-+... .+...+ ......++|.||+|+
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~~-vlrq~~---~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYA-VLRQAW---IEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHHH-HHHHHH---HccCceEEEEehhhh
Confidence 9988888888899999999998753222111 111111 234457888999995
No 339
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.43 E-value=8e-07 Score=63.99 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=56.2
Q ss_pred ECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCC----------hHHHHHHHHHHHHHHHhC-CCCCeEEEEE
Q 031263 54 VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQAQG-NPNMVMALAG 122 (162)
Q Consensus 54 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piiiv~ 122 (162)
+....++|.++|.+|+..-+..|...+.++.++++|+..+. ...+.+...+++.++... -..+.+|++.
T Consensus 197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFL 276 (379)
T KOG0099|consen 197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFL 276 (379)
T ss_pred EeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEe
Confidence 33445789999999999999999999999999999998873 223444444445554442 2567799999
Q ss_pred eCCCCc
Q 031263 123 NKADLL 128 (162)
Q Consensus 123 nK~D~~ 128 (162)
||.|+.
T Consensus 277 NKqDll 282 (379)
T KOG0099|consen 277 NKQDLL 282 (379)
T ss_pred cHHHHH
Confidence 999984
No 340
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.40 E-value=1.5e-06 Score=66.11 Aligned_cols=83 Identities=14% Similarity=-0.065 Sum_probs=53.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-CCCCccceeeEEEEEEEEECC---------------eEEEEEEEeCCCcccc--
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVND---------------ATVKFEIWDTAGQERY-- 72 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~g~~~~-- 72 (162)
.++.++|.|++|||||+|.+++... .....|..+.+-....+.+.. ....+++.|.||.-.-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999876 432222221221122222322 1246789999995321
Q ss_pred --cc---chhhhhcCCcEEEEEEECC
Q 031263 73 --HS---LAPMYYRGAAAAIIVYDIT 93 (162)
Q Consensus 73 --~~---~~~~~~~~~~~~i~v~d~~ 93 (162)
.. .--..++.+|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 11 2223478899999999985
No 341
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=1.7e-07 Score=71.44 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=90.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC--------CCCCC--------CccceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG--------QFIEF--------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 72 (162)
+..+|-++-.-.+||||...|++.. ..... .....|++..+.-+.++-+++++.++||||+-.|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 4468889999999999999998842 11110 0122355666777777878899999999999999
Q ss_pred ccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
+......++-.|+++.|||.+-.-.-+.+..|.+ ....++|-..+.||+|...
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhh
Confidence 9999999999999999999997655566667743 3346789999999999854
No 342
>PRK12288 GTPase RsgA; Reviewed
Probab=98.39 E-value=1e-06 Score=66.85 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=35.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCC------ccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031263 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQ------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 73 (162)
++|+|.+|||||||+|+|++....... .....++.....+.+.+. ..++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 789999999999999999976433211 111112222333333322 2489999986654
No 343
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=2.6e-06 Score=64.26 Aligned_cols=84 Identities=20% Similarity=0.084 Sum_probs=54.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCcccee--eEEEEEEEE----------EC----CeEEEEEEEeCCCc----
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIG--AAFFSQTLA----------VN----DATVKFEIWDTAGQ---- 69 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~--~~~~~~~~~----------~~----~~~~~~~~~D~~g~---- 69 (162)
.+++.++|.|+||||||+|+++........+|-.+ ++.....+. .. -....++++|.+|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 57899999999999999999998775433333322 222222111 01 12357899999983
Q ss_pred cccccchh---hhhcCCcEEEEEEECC
Q 031263 70 ERYHSLAP---MYYRGAAAAIIVYDIT 93 (162)
Q Consensus 70 ~~~~~~~~---~~~~~~~~~i~v~d~~ 93 (162)
.+-..+-. ..++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 22222323 3367899999999988
No 344
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.37 E-value=2.1e-06 Score=74.44 Aligned_cols=111 Identities=21% Similarity=0.245 Sum_probs=67.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCC----c--cceeeEEEEEEEEECCeEEEEEEEeCCCcc--------ccccchhh
Q 031263 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQ----E--STIGAAFFSQTLAVNDATVKFEIWDTAGQE--------RYHSLAPM 78 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~ 78 (162)
.+|||++|+||||++++- +-.++-.. . ...+.+. ...-.+.. +-.++|++|.. .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 689999999999999876 44443211 0 0111111 01111222 34599999932 12233444
Q ss_pred hh---------cCCcEEEEEEECCCh-----HHH----HHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 79 YY---------RGAAAAIIVYDITNQ-----ASF----ERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 79 ~~---------~~~~~~i~v~d~~~~-----~s~----~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
++ +..+|+|+++|+.+- +.. ..++..+.++.+.-.-..||.++.||+|+.
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 42 347999999998852 111 234456666666556799999999999985
No 345
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.36 E-value=8.1e-07 Score=65.71 Aligned_cols=116 Identities=22% Similarity=0.203 Sum_probs=72.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCC--ccceeeEEEEEEEEECCeEEEEEEEeCCCcc-cc-------ccchhhh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ--ESTIGAAFFSQTLAVNDATVKFEIWDTAGQE-RY-------HSLAPMY 79 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~-------~~~~~~~ 79 (162)
.--|.++|..++|||||++++......+.. -.|..++.....+ .++ ..+.+-||-|.= +. ++..-.-
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~L-psg--~~vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHL-PSG--NFVLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccC-CCC--cEEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 356899999999999999999976554322 2333333333333 233 456778998831 11 1111222
Q ss_pred hcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe----EEEEEeCCCCc
Q 031263 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV----MALAGNKADLL 128 (162)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----iiiv~nK~D~~ 128 (162)
...+|.++-|.|++.|+--++....+.-+....-++.| ++=|-||+|..
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 56689999999999987655555555556665444444 44566777763
No 346
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.35 E-value=8.5e-06 Score=60.82 Aligned_cols=63 Identities=17% Similarity=0.004 Sum_probs=38.2
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 58 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
.+.+.|+||+|..+.. ......+|.++++...... .++......+ ...|.+++.||+|+....
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~ 188 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGAT 188 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchh
Confidence 4778999999854222 2345667888877543332 3333333222 245679999999986543
No 347
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.30 E-value=4.6e-06 Score=62.08 Aligned_cols=86 Identities=17% Similarity=0.100 Sum_probs=58.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEEC---------------CeEEEEEEEeCCCccc-
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN---------------DATVKFEIWDTAGQER- 71 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~D~~g~~~- 71 (162)
...+++-++|.+++|||||+|.+.+....+...|-.+++-....+.+. -....++++|.+|.-.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 456899999999999999999999988776555555544333333221 1235799999998421
Q ss_pred ---cccchh---hhhcCCcEEEEEEECC
Q 031263 72 ---YHSLAP---MYYRGAAAAIIVYDIT 93 (162)
Q Consensus 72 ---~~~~~~---~~~~~~~~~i~v~d~~ 93 (162)
-..+-. ..++.+|+++-|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 122222 3367789998888776
No 348
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.30 E-value=2e-06 Score=65.74 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=36.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC----CCccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE----FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 70 (162)
.+++++|.+|||||||+|++++..... ...+..+.+.....+..+. .+.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence 589999999999999999999854311 1122223333333343322 35799999954
No 349
>PRK12289 GTPase RsgA; Reviewed
Probab=98.30 E-value=1.8e-06 Score=65.64 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=54.6
Q ss_pred ccccchhhhhcCCcEEEEEEECCChH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCe
Q 031263 71 RYHSLAPMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPI 149 (162)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 149 (162)
+-+.+....+.++|.+++|+|+.++. ....+..|+..+.. .++|++||+||+|+...... +.....+...++.+
T Consensus 78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v 152 (352)
T PRK12289 78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQP 152 (352)
T ss_pred cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeE
Confidence 34455566688999999999999865 44566777766532 47899999999999643222 22223334456777
Q ss_pred eecccccc
Q 031263 150 LYGNLCKN 157 (162)
Q Consensus 150 ~~~s~~~~ 157 (162)
+++|+.++
T Consensus 153 ~~iSA~tg 160 (352)
T PRK12289 153 LFISVETG 160 (352)
T ss_pred EEEEcCCC
Confidence 77665544
No 350
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.28 E-value=2.2e-06 Score=62.10 Aligned_cols=59 Identities=20% Similarity=0.143 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCC------CccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEF------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 73 (162)
-.++++|.+|||||||+|++.+...... ......++.....+...+ -.++||||...+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence 3689999999999999999997543221 111111222233333332 2699999975543
No 351
>PRK12289 GTPase RsgA; Reviewed
Probab=98.27 E-value=1.9e-06 Score=65.51 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=34.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCC------ccceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031263 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQ------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 72 (162)
++|+|.+|||||||+|++++..-.... .....++.....+...+.. .++||||...+
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 899999999999999999975433211 1111122233333343222 68999996443
No 352
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.27 E-value=1.8e-06 Score=63.59 Aligned_cols=59 Identities=24% Similarity=0.229 Sum_probs=37.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC------CCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ------FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 73 (162)
-.+++|.+|||||||+|++.... ...........+.....+.+++.+ .++||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 57899999999999999999632 222222222233445555554323 488999976654
No 353
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.25 E-value=1.9e-06 Score=63.89 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=53.1
Q ss_pred hhhcCCcEEEEEEECCChH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccc
Q 031263 78 MYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCK 156 (162)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (162)
..+.++|.+++|+|++++. ++..+..|+..+... ++|+++|+||+|+..... ...........+++++++|+.+
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~ 148 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKT 148 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCC
Confidence 3478899999999999987 788888888776543 678999999999965421 1111222233467777776665
Q ss_pred cc
Q 031263 157 NS 158 (162)
Q Consensus 157 ~~ 158 (162)
+.
T Consensus 149 g~ 150 (287)
T cd01854 149 GE 150 (287)
T ss_pred Cc
Confidence 43
No 354
>PRK13796 GTPase YqeH; Provisional
Probab=98.23 E-value=2.3e-06 Score=65.44 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC----CCccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE----FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 69 (162)
..++.++|.+|||||||+|+++...... ...+..|.+.....+..++. ..++||||.
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 3579999999999999999999643111 11122233333333434332 379999996
No 355
>PRK00098 GTPase RsgA; Reviewed
Probab=98.21 E-value=2.1e-06 Score=63.96 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=50.3
Q ss_pred hcCCcEEEEEEECCChHHHHH-HHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 80 YRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
..++|.+++|+|++++.++.. +..|+..+.. .++|+++|+||+|+..... ...+........+++++.+|+.++.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 478999999999988765444 4677776643 3689999999999963222 1122333334456777777776543
No 356
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=2.4e-05 Score=63.04 Aligned_cols=118 Identities=15% Similarity=0.240 Sum_probs=71.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCcccee-------------------------------------------
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIG------------------------------------------- 44 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~------------------------------------------- 44 (162)
+..-||++.|..++||||++|+++..+..+......+
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 3457999999999999999999997654432211110
Q ss_pred -eEEEEEEEEECCe----EEEEEEEeCCCcc---ccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC
Q 031263 45 -AAFFSQTLAVNDA----TVKFEIWDTAGQE---RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNM 116 (162)
Q Consensus 45 -~~~~~~~~~~~~~----~~~~~~~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 116 (162)
.....+.+..++. .-.+.+.|.||.+ ....-...+..++|++|+|.++.+.-...+ +.++....+. ++
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---KP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---CC
Confidence 0000111111110 1246788888853 233333456778999999998877544333 3444444333 55
Q ss_pred eEEEEEeCCCCcC
Q 031263 117 VMALAGNKADLLD 129 (162)
Q Consensus 117 piiiv~nK~D~~~ 129 (162)
.|+|+.||+|...
T Consensus 263 niFIlnnkwDasa 275 (749)
T KOG0448|consen 263 NIFILNNKWDASA 275 (749)
T ss_pred cEEEEechhhhhc
Confidence 6888899999843
No 357
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.19 E-value=3.6e-06 Score=55.84 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=48.0
Q ss_pred hhhcCCcEEEEEEECCChHHHH--HHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccc
Q 031263 78 MYYRGAAAAIIVYDITNQASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLC 155 (162)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 155 (162)
..+..+|++++|+|++++.+.. .+..|+.. . ..+.|+++|.||+|+..+..+ .+....+...+..++++|+.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~~~--~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEEQR--KAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHHHH--HHHHHHHHhcCCeEEEEEec
Confidence 4567899999999999875433 33344332 2 256799999999998643321 23334444445667776665
Q ss_pred ccc
Q 031263 156 KNS 158 (162)
Q Consensus 156 ~~~ 158 (162)
++.
T Consensus 81 ~~~ 83 (141)
T cd01857 81 KEN 83 (141)
T ss_pred CCC
Confidence 543
No 358
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.18 E-value=1.4e-05 Score=54.15 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~ 33 (162)
++++|..|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999999865
No 359
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.10 E-value=5.1e-06 Score=64.83 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=43.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 69 (162)
.+.|-++|.|||||||+||++.+.+-... ..|.|-+..-.++.++. .+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 69999999999999999999999876642 34555555555555554 5679999995
No 360
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.08 E-value=6.6e-05 Score=59.51 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=53.6
Q ss_pred EEEEEEeCCCc-------------cccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeC
Q 031263 59 VKFEIWDTAGQ-------------ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNK 124 (162)
Q Consensus 59 ~~~~~~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK 124 (162)
-++.+.|.||. +....+...|+.+.+++|+|+--.. .++-+.....+-..+. .....|+|.+|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 35789999992 3456788999999999999975332 2222333333333222 45678999999
Q ss_pred CCCcCcccCCHHHHhhhc
Q 031263 125 ADLLDARKVTAEARSTSL 142 (162)
Q Consensus 125 ~D~~~~~~~~~~~~~~~~ 142 (162)
.|+.++.......+++-+
T Consensus 489 VDlAEknlA~PdRI~kIl 506 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQII 506 (980)
T ss_pred cchhhhccCCHHHHHHHH
Confidence 999877666666555444
No 361
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=2.7e-05 Score=59.82 Aligned_cols=115 Identities=17% Similarity=0.112 Sum_probs=74.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC---CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFI---EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
-|+-.|.-..|||+|++.+.+..-. ......++.+.......... ..+.++|.||++++-.....-+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 3677889999999999999986443 22233444443333333333 388999999998876555566678999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
|++.++.-. .+..+-+.-+...+ -...++|.+|+|+.+..
T Consensus 80 vV~~deGl~-~qtgEhL~iLdllg--i~~giivltk~D~~d~~ 119 (447)
T COG3276 80 VVAADEGLM-AQTGEHLLILDLLG--IKNGIIVLTKADRVDEA 119 (447)
T ss_pred EEeCccCcc-hhhHHHHHHHHhcC--CCceEEEEeccccccHH
Confidence 999975311 11122222333333 33578999999997654
No 362
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.06 E-value=1.2e-06 Score=62.05 Aligned_cols=73 Identities=21% Similarity=0.270 Sum_probs=53.1
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECC----------ChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCC
Q 031263 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT----------NQASFERAKKWVQELQAQG-NPNMVMALAGNKA 125 (162)
Q Consensus 57 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~ 125 (162)
..+.|.+.|.+|+..-+..|...+.+.-.+++++..+ +...+++.+..+..+..+. ..+.++|++.||-
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 4466788999999888888888888877777666554 3445566666666665553 3678999999999
Q ss_pred CCcC
Q 031263 126 DLLD 129 (162)
Q Consensus 126 D~~~ 129 (162)
|+.+
T Consensus 277 DlLE 280 (359)
T KOG0085|consen 277 DLLE 280 (359)
T ss_pred hhhh
Confidence 9843
No 363
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.05 E-value=9e-06 Score=56.57 Aligned_cols=53 Identities=26% Similarity=0.236 Sum_probs=38.6
Q ss_pred cccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
+..++..+++.+|++++|+|++++. ..|...+... ..+.|+++|+||+|+...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~-----~~~~~~l~~~-~~~~~~ilV~NK~Dl~~~ 76 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFP-----GSLIPRLRLF-GGNNPVILVGNKIDLLPK 76 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCC-----CccchhHHHh-cCCCcEEEEEEchhcCCC
Confidence 5677788899999999999998753 1233333222 246799999999998643
No 364
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.05 E-value=1.3e-05 Score=59.53 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=37.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCc------cceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQE------STIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 73 (162)
-.++++|.+|+|||||+|.+++........ ...+.+.........+. ..++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 469999999999999999999865432111 11112222233333321 2589999986653
No 365
>PRK00098 GTPase RsgA; Reviewed
Probab=98.04 E-value=1.3e-05 Score=59.77 Aligned_cols=58 Identities=21% Similarity=0.173 Sum_probs=35.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCcc------ceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQES------TIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 71 (162)
..++++|.+|+|||||+|++++........- ....+.....+..++. ..++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 3689999999999999999997643321110 0011222233233322 36899999754
No 366
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.04 E-value=4.6e-05 Score=58.91 Aligned_cols=72 Identities=19% Similarity=0.231 Sum_probs=54.7
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCC--------h--HHHHHHHHHHHHHHHh-CCCCCeEEEEEeCC
Q 031263 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN--------Q--ASFERAKKWVQELQAQ-GNPNMVMALAGNKA 125 (162)
Q Consensus 57 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~--------~--~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~ 125 (162)
....+.++|.+|+..-+.-|..++.++++++||+++++ + ..+.+....+..+... ...++|++|+.||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 44789999999999889999999999999999999873 1 2344444444444443 23689999999999
Q ss_pred CCc
Q 031263 126 DLL 128 (162)
Q Consensus 126 D~~ 128 (162)
|+.
T Consensus 314 D~f 316 (389)
T PF00503_consen 314 DLF 316 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 983
No 367
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.97 E-value=7.4e-06 Score=55.12 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=44.6
Q ss_pred cchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecc
Q 031263 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGN 153 (162)
Q Consensus 74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 153 (162)
.+.+..++++|++++|+|++++..... ..+...+. ..+.|+++|+||+|+...... ..........+.+++.+|
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iS 77 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYVS 77 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEEE
Confidence 456677888999999999987543221 12222222 236799999999998543221 111111122334566666
Q ss_pred cccc
Q 031263 154 LCKN 157 (162)
Q Consensus 154 ~~~~ 157 (162)
+.++
T Consensus 78 a~~~ 81 (156)
T cd01859 78 AKER 81 (156)
T ss_pred cccc
Confidence 5544
No 368
>PRK12288 GTPase RsgA; Reviewed
Probab=97.97 E-value=2e-05 Score=59.94 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=51.4
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccC-CHHHHhhhcCCCCCCeeecccccc
Q 031263 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV-TAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
-++|.+++|++.+.+.++..+..|+..+.. .++|.+||+||+|+...... ...+........+++++++|+.+.
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG 193 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 448999999999888899999999875543 46789999999999653321 112222233445677887776654
No 369
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.93 E-value=0.00012 Score=46.09 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=62.2
Q ss_pred EEEEc-CCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEE
Q 031263 13 LVLLG-DVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (162)
Q Consensus 13 i~viG-~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 91 (162)
|+++| ..|+|||++...+...-.........-.+ .+... ...+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d-----~d~~~-~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVD-----LDLQF-GDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEE-----CCCCC-CCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEec
Confidence 44555 68899999876555321111011222111 11111 12789999998643 233456778999999887
Q ss_pred CCChHHHHHHHHHHHHHHHhCCC-CCeEEEEEeC
Q 031263 92 ITNQASFERAKKWVQELQAQGNP-NMVMALAGNK 124 (162)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~~-~~piiiv~nK 124 (162)
.+ ..++..+..+++.+.+...+ ...+.+|+|+
T Consensus 74 ~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 55 56778888888888776544 4567777775
No 370
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.91 E-value=1.3e-05 Score=60.83 Aligned_cols=59 Identities=17% Similarity=0.275 Sum_probs=44.5
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 69 (162)
-+..+++-|+|.+++||||+||++.....+.. .++.|.+..-..+..+. .+.+.|.||.
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCce
Confidence 36679999999999999999999999888753 34444444444444443 6889999994
No 371
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.90 E-value=0.00045 Score=46.55 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=64.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc---------------c
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER---------------Y 72 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------------~ 72 (162)
+...||.+-|+||+||||++.++.+.--. ....-.| +....+.-+++..-|.+.|+...+. |
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~-~g~kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLRE-KGYKVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHh-cCceeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 45689999999999999999887742111 1111222 4455555677777888888773211 1
Q ss_pred -------c----cchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCC
Q 031263 73 -------H----SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127 (162)
Q Consensus 73 -------~----~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 127 (162)
. ......++.+|.++ +|=--+-.|. .+.+...+..--..+.|++.+.++-+.
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 1 01112234456554 4433332111 234555555544457788877776654
No 372
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=1.7e-05 Score=63.14 Aligned_cols=123 Identities=19% Similarity=0.143 Sum_probs=81.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCC-----CCCCc-----------cceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQF-----IEFQE-----------STIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 72 (162)
+..+|-++-.-.+||||+-++.+...- ..... ...|++..+.-....-+.+++.++||||+-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 446677777888999999998874211 00000 01112222222222223688999999999999
Q ss_pred ccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCH
Q 031263 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA 135 (162)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~ 135 (162)
.......++-.|+.|++++..-.-.-+....|.+. .+ -++|.+.+.||.|+........
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~r---y~vP~i~FiNKmDRmGa~~~~~ 176 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQM-KR---YNVPRICFINKMDRMGASPFRT 176 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hh---cCCCeEEEEehhhhcCCChHHH
Confidence 98889999999999999998765433444556433 22 3789999999999987766543
No 373
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.89 E-value=0.00017 Score=56.11 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=61.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh------CCCC----CCC-----------ccceeeEEEEEEEEEC------------
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK------GQFI----EFQ-----------ESTIGAAFFSQTLAVN------------ 55 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~------~~~~----~~~-----------~~~~~~~~~~~~~~~~------------ 55 (162)
+..-|+++|.+|+||||++..+.. .... ..+ ....+..+.......+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 356799999999999999987762 1111 011 1111122211110001
Q ss_pred -CeEEEEEEEeCCCccccccch----hhh--hcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 56 -DATVKFEIWDTAGQERYHSLA----PMY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 56 -~~~~~~~~~D~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
...+.+.++||+|........ ..+ ...++-+++|.|++....- ......+... -.+--+|.||.|..
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~---~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS---VDVGSVIITKLDGH 252 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhc---cCCcEEEEECccCC
Confidence 024688999999965432111 111 2346789999998754221 1122222221 22566788999974
No 374
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=4.6e-05 Score=57.78 Aligned_cols=118 Identities=19% Similarity=0.270 Sum_probs=69.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCC----------------Cc-------cceeeEEEEEEEEECC---------
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEF----------------QE-------STIGAAFFSQTLAVND--------- 56 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~----------------~~-------~~~~~~~~~~~~~~~~--------- 56 (162)
..++++++|.-.+|||||+--+..++.... .. ..+|.+...+.+..+.
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 458999999999999999976664433211 01 1122222222221111
Q ss_pred -eEEEEEEEeCCCccccccchhhhhcC--CcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 57 -ATVKFEIWDTAGQERYHSLAPMYYRG--AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 57 -~~~~~~~~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
..--++++|.+|+..|..-...-+.+ .+...+++++....... .++-+..+.. -++|++++.+|+|+..+
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A---L~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA---LNIPFFVLVTKMDLVDR 318 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH---hCCCeEEEEEeeccccc
Confidence 11247899999998886544443333 57788888877542211 1222222322 38899999999998654
No 375
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.84 E-value=0.00048 Score=53.23 Aligned_cols=115 Identities=17% Similarity=0.310 Sum_probs=65.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC-----------------CCCCCCc-cce---eeEEE---EEEEEE-CCeEEEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG-----------------QFIEFQE-STI---GAAFF---SQTLAV-NDATVKFEIW 64 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~-----------------~~~~~~~-~~~---~~~~~---~~~~~~-~~~~~~~~~~ 64 (162)
.+=|-|+|+-.+|||||++||+.. +.++... .++ .+.|. ...+.+ ++-.+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 366889999999999999999952 2332111 111 11111 122333 5667899999
Q ss_pred eCCCc-----------cccccchhhhhc--------------------CCcEEEEEEECC----ChHHHHHH-HHHHHHH
Q 031263 65 DTAGQ-----------ERYHSLAPMYYR--------------------GAAAAIIVYDIT----NQASFERA-KKWVQEL 108 (162)
Q Consensus 65 D~~g~-----------~~~~~~~~~~~~--------------------~~~~~i~v~d~~----~~~s~~~~-~~~~~~~ 108 (162)
|+-|- +.-+.....++. ..-|+++.-|.+ .++.+.+. ...+..|
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 99881 111111111211 134777776655 23333333 3566666
Q ss_pred HHhCCCCCeEEEEEeCCCC
Q 031263 109 QAQGNPNMVMALAGNKADL 127 (162)
Q Consensus 109 ~~~~~~~~piiiv~nK~D~ 127 (162)
+.. +.|++++.|-.+-
T Consensus 177 k~i---gKPFvillNs~~P 192 (492)
T PF09547_consen 177 KEI---GKPFVILLNSTKP 192 (492)
T ss_pred HHh---CCCEEEEEeCCCC
Confidence 665 6789999998773
No 376
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.81 E-value=2.7e-05 Score=59.59 Aligned_cols=82 Identities=21% Similarity=0.145 Sum_probs=52.7
Q ss_pred ccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhh----hcCC
Q 031263 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARST----SLCP 144 (162)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~----~~~~ 144 (162)
.++|..+...+++.++++++|+|+.|.. ..|...+.+.. .+.|+++|+||+|+..+ .+..++... .+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 4567777778888899999999997643 34666665553 36789999999999643 233333332 2344
Q ss_pred CCCC---eeecccccc
Q 031263 145 GKWP---ILYGNLCKN 157 (162)
Q Consensus 145 ~~~~---~~~~s~~~~ 157 (162)
.++. ++.+|+.++
T Consensus 123 ~g~~~~~i~~vSAk~g 138 (360)
T TIGR03597 123 LGLKPVDIILVSAKKG 138 (360)
T ss_pred cCCCcCcEEEecCCCC
Confidence 4543 555555443
No 377
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.76 E-value=5.8e-05 Score=50.87 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=33.8
Q ss_pred hhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
..+.++|.+++|+|++++..- ....+...+... ..+.|+++|.||+|+..+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~ 54 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGT-RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPT 54 (157)
T ss_pred HhhhhCCEEEEEEECCCCccc-cCHHHHHHHHhc-cCCCCEEEEEEchhcCCH
Confidence 346789999999999986321 112233333322 346899999999999643
No 378
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.74 E-value=0.00036 Score=47.75 Aligned_cols=66 Identities=15% Similarity=0.073 Sum_probs=38.3
Q ss_pred EEEEEEEeCCCccccccch----hhh--hcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 58 TVKFEIWDTAGQERYHSLA----PMY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 58 ~~~~~~~D~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
...+.++|++|...+.... ..+ ....+.+++|+|.....+ ...+...+.+.. + ...+|.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCC
Confidence 3567889999974321111 111 234899999999875432 223444443332 2 3566779999754
No 379
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.73 E-value=0.00031 Score=52.87 Aligned_cols=24 Identities=17% Similarity=0.348 Sum_probs=20.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~ 32 (162)
..--++++|++|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 346789999999999999987764
No 380
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00018 Score=55.19 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
.-.++++|++|+||||++.++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988875
No 381
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.70 E-value=0.00063 Score=50.13 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=46.2
Q ss_pred EEEEEEEeCCCccccccchh----h---h-----hcCCcEEEEEEECCCh-HHHHHHHHHHHHHHHhCCCCCeEEEEEeC
Q 031263 58 TVKFEIWDTAGQERYHSLAP----M---Y-----YRGAAAAIIVYDITNQ-ASFERAKKWVQELQAQGNPNMVMALAGNK 124 (162)
Q Consensus 58 ~~~~~~~D~~g~~~~~~~~~----~---~-----~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piiiv~nK 124 (162)
.+.+.++||+|........- . . -..++..++|+|++.. +.+..... +.+.. -+--+|.||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~----f~~~~---~~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKV----FNEAV---GLTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHH----HHhhC---CCCEEEEEc
Confidence 36889999999754322111 0 1 1237899999999853 23332222 22221 145778899
Q ss_pred CCCcCcccCCHHHHhhhcCCCCCCeeeccc
Q 031263 125 ADLLDARKVTAEARSTSLCPGKWPILYGNL 154 (162)
Q Consensus 125 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 154 (162)
.|...... ....... ..+.|+.+.+.
T Consensus 227 lDe~~~~G-~~l~~~~---~~~~Pi~~~~~ 252 (272)
T TIGR00064 227 LDGTAKGG-IILSIAY---ELKLPIKFIGV 252 (272)
T ss_pred cCCCCCcc-HHHHHHH---HHCcCEEEEeC
Confidence 99743322 2222221 22566766653
No 382
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.68 E-value=0.00057 Score=42.62 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=50.9
Q ss_pred EEEEc-CCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEE
Q 031263 13 LVLLG-DVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (162)
Q Consensus 13 i~viG-~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 91 (162)
|++.| ..|+|||++...+...-. ....+.. .++.+.. +.+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-~~~~~vl-------~~d~d~~-~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-RRGKRVL-------LIDLDPQ-YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-hCCCcEE-------EEeCCCC-CCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence 56777 679999998765553211 1111222 1222222 6789999998642 223366778999999987
Q ss_pred CCChHHHHHHHHHHH
Q 031263 92 ITNQASFERAKKWVQ 106 (162)
Q Consensus 92 ~~~~~s~~~~~~~~~ 106 (162)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 64 567777777766
No 383
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.68 E-value=0.00022 Score=39.45 Aligned_cols=43 Identities=28% Similarity=0.325 Sum_probs=27.7
Q ss_pred CcEEEEEEECCCh--HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCC
Q 031263 83 AAAAIIVYDITNQ--ASFERAKKWVQELQAQGNPNMVMALAGNKAD 126 (162)
Q Consensus 83 ~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D 126 (162)
.++++|++|.+.. -++++-...+..++.. .++.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~-F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL-FPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH-TTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH-cCCCCEEEEEeccC
Confidence 5889999999964 3455555667777666 46899999999998
No 384
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.66 E-value=0.0012 Score=49.77 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKGQF 35 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~~~ 35 (162)
.++-|--|+|||||+|.++.+..
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~ 26 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRD 26 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccC
Confidence 35667899999999999997543
No 385
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.00016 Score=62.24 Aligned_cols=115 Identities=23% Similarity=0.185 Sum_probs=61.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCC-CCccceeeEE-EEEEEEECCeEEEEEEEeCCCcc--------ccccchhhh---
Q 031263 13 LVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAF-FSQTLAVNDATVKFEIWDTAGQE--------RYHSLAPMY--- 79 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~--- 79 (162)
.+|||++|+||||++..- +..|+- ......+..- .....+ ..-.-.-.++||+|.. .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccC-cccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 589999999999997522 222221 0000000000 001111 0111234688999832 222344433
Q ss_pred ------hcCCcEEEEEEECCCh-----HHH----HHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 80 ------YRGAAAAIIVYDITNQ-----ASF----ERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 80 ------~~~~~~~i~v~d~~~~-----~s~----~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
.+..+|+|+.+|+.+- ... ..++.=+.++...-.-..|++++.||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 3457999999998841 111 1122334444443346899999999999853
No 386
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.59 E-value=0.0002 Score=54.45 Aligned_cols=119 Identities=19% Similarity=0.292 Sum_probs=61.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCC----------------CCCC--ccceeeEE-----EEEEEE------------
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQF----------------IEFQ--ESTIGAAF-----FSQTLA------------ 53 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~----------------~~~~--~~~~~~~~-----~~~~~~------------ 53 (162)
..++|+++|...+|||||+--+.+++. .-+. .+..|-+. ....+.
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 458999999999999999955543322 1111 11222111 111110
Q ss_pred -E-CCeEEEEEEEeCCCccccccchhhhhcC--CcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 54 -V-NDATVKFEIWDTAGQERYHSLAPMYYRG--AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 54 -~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
+ ....--++++|.+|++.|-.-...-+.+ .|.-.+++-++-. -..-.++-+.... .-++|+++|.+|+|+..
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLAL---aL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLAL---ALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhh---hhcCcEEEEEEeeccCc
Confidence 0 1111247899999998875433322222 4555555554421 0011112211111 23789999999999854
Q ss_pred cc
Q 031263 130 AR 131 (162)
Q Consensus 130 ~~ 131 (162)
+.
T Consensus 288 AN 289 (641)
T KOG0463|consen 288 AN 289 (641)
T ss_pred HH
Confidence 43
No 387
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00017 Score=56.76 Aligned_cols=119 Identities=20% Similarity=0.221 Sum_probs=76.1
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhC------------CCCC----CCccceeeEEEEEEEE--------------E
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKG------------QFIE----FQESTIGAAFFSQTLA--------------V 54 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~------------~~~~----~~~~~~~~~~~~~~~~--------------~ 54 (162)
..+....++-+|-....|||||...+... .|.. +....+++......+. .
T Consensus 14 ~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469|consen 14 DKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred ccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence 34555678889999999999999888742 1111 0111122111111111 1
Q ss_pred CCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCC
Q 031263 55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127 (162)
Q Consensus 55 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 127 (162)
++.++-+.++|.||+-.|.......++-.|+.++|+|.-+.--.+.-..+.+.+. ..+.=+++.||.|+
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~----ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA----ERIKPVLVMNKMDR 162 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH----hhccceEEeehhhH
Confidence 4456889999999999999999999999999999999987543322223333332 22333566799997
No 388
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.58 E-value=9.6e-05 Score=54.62 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=38.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCC----ccceeeEEEEEE-EEECCeEEEEEEEeCCCc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGAAFFSQT-LAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g~ 69 (162)
....+++|+|-||+|||||+|++......... .+..|++..... +.+.+ ...+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~-rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH-RPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc-CCceEEecCCCc
Confidence 46789999999999999999988865433211 122222322222 33333 234789999994
No 389
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.56 E-value=0.0013 Score=45.46 Aligned_cols=103 Identities=13% Similarity=0.112 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEE--EEEeCCC-ccccccchhhhhcCCcEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF--EIWDTAG-QERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~D~~g-~~~~~~~~~~~~~~~~~~i 87 (162)
-.++++|+.|+|||||++.+.+-..+. .|. +.+++..+.+ +-.+.+| +.+.-.+......+++.++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~-----~G~------i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPN-----GDN------DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCC-----CcE------EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 468999999999999999988754322 121 1122211111 1111333 3333455556667777655
Q ss_pred E--EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCC
Q 031263 88 I--VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD 126 (162)
Q Consensus 88 ~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D 126 (162)
+ -...-|+.+...+..++..+... ....++++-+..+
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~ 133 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEE--GKKTALVVEHDLA 133 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCHH
Confidence 5 11222455556666666665433 1245666655443
No 390
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.55 E-value=0.001 Score=43.26 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~ 34 (162)
..-+++.|++|+|||++++.+.+.-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999998754
No 391
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.0015 Score=52.30 Aligned_cols=135 Identities=17% Similarity=0.211 Sum_probs=67.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC--------CC--C--CCc-----------cceeeEEEEEEEE-------ECCeEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQ--------FI--E--FQE-----------STIGAAFFSQTLA-------VNDATV 59 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~--------~~--~--~~~-----------~~~~~~~~~~~~~-------~~~~~~ 59 (162)
.-.|+|+|..|+||||++..+...- .. . .+. ...+..+....-. .....+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 4688999999999999998776421 00 0 000 0011111110000 011246
Q ss_pred EEEEEeCCCccccccchh---hhhc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCC
Q 031263 60 KFEIWDTAGQERYHSLAP---MYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT 134 (162)
Q Consensus 60 ~~~~~D~~g~~~~~~~~~---~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~ 134 (162)
.+.|+||+|......... ..+. .....++|++.+. +...+...+..+... .+.-+|.||.|....
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~~---- 499 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETGR---- 499 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCccc----
Confidence 789999999643321110 0111 1234566667664 234444444444332 356788999997332
Q ss_pred HHHHhhhcCCCCCCeeeccc
Q 031263 135 AEARSTSLCPGKWPILYGNL 154 (162)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~s~ 154 (162)
.-.+...+...+.++.+.+.
T Consensus 500 lG~aLsv~~~~~LPI~yvt~ 519 (559)
T PRK12727 500 FGSALSVVVDHQMPITWVTD 519 (559)
T ss_pred hhHHHHHHHHhCCCEEEEeC
Confidence 12333333344566666554
No 392
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.54 E-value=0.00045 Score=50.11 Aligned_cols=85 Identities=16% Similarity=0.107 Sum_probs=56.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc-------cccchhhhhcCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-------YHSLAPMYYRGA 83 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~ 83 (162)
.|+-++|-|++||||++..+.+...+.......++....-.+.. +..++++.|.||.-+ .........+-|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y--~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRY--KGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEec--cccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 58899999999999999999976554323322233333333333 347899999998421 122233445678
Q ss_pred cEEEEEEECCChHH
Q 031263 84 AAAIIVYDITNQAS 97 (162)
Q Consensus 84 ~~~i~v~d~~~~~s 97 (162)
+.+++|.|+..|-+
T Consensus 138 nli~~vld~~kp~~ 151 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLS 151 (358)
T ss_pred cEEEEEeeccCccc
Confidence 99999999998744
No 393
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.52 E-value=0.0017 Score=39.39 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=53.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc-hhhhhcCCcEEEEEEE
Q 031263 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-APMYYRGAAAAIIVYD 91 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~i~v~d 91 (162)
+++.|..|+|||++...+...-... . .+..-++ .+.++|+++....... .......++.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~-g---------~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR-G---------KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-C---------CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 6788999999999988776532111 1 1111122 7889999986443321 1344567888888887
Q ss_pred CCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEe
Q 031263 92 ITNQASFERAKKWVQELQAQ-GNPNMVMALAGN 123 (162)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~n 123 (162)
... .++............. .....+..++.|
T Consensus 68 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 68 PEA-LAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred Cch-hhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 664 3344444333222222 223455555544
No 394
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=0.00027 Score=51.67 Aligned_cols=60 Identities=22% Similarity=0.329 Sum_probs=45.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCc----cceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE----STIGAAFFSQTLAVNDATVKFEIWDTAG 68 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~g 68 (162)
..++|+.+|..|.|||||+..+.+..+..... |+.........+.-.+-.+++++.||.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 56899999999999999999999987765333 3333333333444466778999999998
No 395
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.49 E-value=0.0023 Score=42.52 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999998763
No 396
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.49 E-value=0.00057 Score=45.16 Aligned_cols=105 Identities=16% Similarity=0.163 Sum_probs=62.0
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCC
Q 031263 15 LLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN 94 (162)
Q Consensus 15 viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 94 (162)
.-|..|+|||++.-.+...-. .......-.+.. .....-.+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALALA-KLGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence 345789999998755543211 111111111110 0011112678999999753 333456688899999998866
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCC
Q 031263 95 QASFERAKKWVQELQAQGNPNMVMALAGNKADL 127 (162)
Q Consensus 95 ~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 127 (162)
..++......++.+.... ...++.++.|+++.
T Consensus 78 ~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 455666556666665443 45578899999974
No 397
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.42 E-value=0.00015 Score=55.32 Aligned_cols=84 Identities=15% Similarity=0.159 Sum_probs=52.7
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--chhhhhcCCc
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--LAPMYYRGAA 84 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--~~~~~~~~~~ 84 (162)
.++.+-|.+||.+++||||+||.|...+.+.. .|-.|.+..-..+. -...+.++|+||.-.-.. .....+ .
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYIt---LmkrIfLIDcPGvVyps~dset~ivL---k 376 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYIT---LMKRIFLIDCPGVVYPSSDSETDIVL---K 376 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHH---HHhceeEecCCCccCCCCCchHHHHh---h
Confidence 45679999999999999999999999988863 33333321000011 123678999999643222 122223 3
Q ss_pred EEEEEEECCChHH
Q 031263 85 AAIIVYDITNQAS 97 (162)
Q Consensus 85 ~~i~v~d~~~~~s 97 (162)
+++-|=.+.+++.
T Consensus 377 GvVRVenv~~pe~ 389 (572)
T KOG2423|consen 377 GVVRVENVKNPED 389 (572)
T ss_pred ceeeeeecCCHHH
Confidence 5566667777653
No 398
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.41 E-value=7.9e-05 Score=56.66 Aligned_cols=121 Identities=16% Similarity=0.142 Sum_probs=71.4
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccc----------------eeeEEEEEEEE------E---------
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST----------------IGAAFFSQTLA------V--------- 54 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~----------------~~~~~~~~~~~------~--------- 54 (162)
+.+..+.|.+.|.-+.|||||.-.+..+....-...+ ..+.+...-+. .
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 4567799999999999999999777655433211111 11111111110 0
Q ss_pred ----CCeEEEEEEEeCCCccccccchh--hhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 55 ----NDATVKFEIWDTAGQERYHSLAP--MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 55 ----~~~~~~~~~~D~~g~~~~~~~~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
....--+.+.|+.|++.+-.-.. ..=...|-.++++.++|.-+-- -.+++--...-..|++++.+|+|+.
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~----tkEHLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM----TKEHLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh----hhHhhhhhhhhcCCEEEEEEecccC
Confidence 11123477999999987743322 2223478889999988864311 1122222223478999999999985
Q ss_pred Cc
Q 031263 129 DA 130 (162)
Q Consensus 129 ~~ 130 (162)
..
T Consensus 269 ~d 270 (527)
T COG5258 269 PD 270 (527)
T ss_pred cH
Confidence 43
No 399
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.41 E-value=0.00033 Score=47.89 Aligned_cols=52 Identities=21% Similarity=0.414 Sum_probs=31.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 66 (162)
||++.|.+|+||||++++++..-- ....+..| +....+.-++...-|.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~-~~~~~v~G--f~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELK-KKGLPVGG--FYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHH-HTCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhh-ccCCccce--EEeecccCCCceEEEEEEEC
Confidence 689999999999999999885311 00112223 33444444555566666666
No 400
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.35 E-value=0.0004 Score=46.67 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=29.4
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 84 AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
|.+++|+|++++.+.. ..++.. ......+.|+++|.||+|+..+
T Consensus 1 Dvvl~VvD~~~p~~~~--~~~i~~-~~~~~~~~p~IiVlNK~Dl~~~ 44 (155)
T cd01849 1 DVILEVLDARDPLGTR--SPDIER-VLIKEKGKKLILVLNKADLVPK 44 (155)
T ss_pred CEEEEEEeccCCcccc--CHHHHH-HHHhcCCCCEEEEEechhcCCH
Confidence 6789999998875433 223332 1112247899999999999543
No 401
>PRK08118 topology modulation protein; Reviewed
Probab=97.34 E-value=0.00023 Score=48.66 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
||+|+|.+|+|||||.+.+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988864
No 402
>PRK13695 putative NTPase; Provisional
Probab=97.33 E-value=0.0025 Score=43.68 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
||++.|.+|+|||||++.+.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998654
No 403
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.00095 Score=48.04 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~~ 34 (162)
|+++|++|+|||||++-+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999888754
No 404
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.31 E-value=0.00026 Score=45.35 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.|+|.|.+||||||+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 405
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00026 Score=48.88 Aligned_cols=22 Identities=41% Similarity=0.751 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
||+|+|.+|+||||+.+++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
No 406
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.30 E-value=0.00016 Score=49.05 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 407
>PRK07261 topology modulation protein; Provisional
Probab=97.28 E-value=0.00028 Score=48.36 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
||+|+|.+|+|||||.+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999988753
No 408
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.25 E-value=0.00027 Score=46.57 Aligned_cols=21 Identities=43% Similarity=0.710 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~ 33 (162)
|+++|.+|+||||+++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999843
No 409
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.25 E-value=0.0019 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
.-.|+++|+.||||||-+-.|..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAa 225 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAA 225 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 56789999999999998866554
No 410
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.25 E-value=0.00039 Score=39.29 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQF 35 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~ 35 (162)
-.++.|+.|+||||++.++.-.-+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 389999999999999998876443
No 411
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.22 E-value=0.00073 Score=52.97 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=59.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh----CCCC------CCCcc-----------ceeeEEEEEEEEEC-----------C
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK----GQFI------EFQES-----------TIGAAFFSQTLAVN-----------D 56 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~----~~~~------~~~~~-----------~~~~~~~~~~~~~~-----------~ 56 (162)
....|+++|.+|+||||++..+.. ..+. +.+.+ ..+..+.......+ -
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 467899999999999999876653 1110 01111 01111111100000 0
Q ss_pred eEEEEEEEeCCCccccccch-----h-hhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 57 ATVKFEIWDTAGQERYHSLA-----P-MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 57 ~~~~~~~~D~~g~~~~~~~~-----~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
....+.++||+|........ . .....++.+++|+|++... + .......+... -...-+|.||.|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~-av~~a~~F~~~---l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--Q-AKNQAKAFHEA---VGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--H-HHHHHHHHHhc---CCCCEEEEecccCC
Confidence 12378999999975432111 1 1133578899999987642 1 11222222221 11245677999963
No 412
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.21 E-value=0.0024 Score=48.19 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~ 33 (162)
.++.|--|+|||||+|+++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 466789999999999999864
No 413
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.18 E-value=0.00052 Score=48.52 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE 37 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~ 37 (162)
=.++++|++|+|||||++++-+-+..+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~~ 55 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEPD 55 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCCC
Confidence 468999999999999999998765443
No 414
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.12 E-value=0.00062 Score=39.39 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~ 33 (162)
|++.|.+|+|||++.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988864
No 415
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.07 E-value=0.00052 Score=44.92 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
=.++|+|..|+|||||++.+.+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 46899999999999999988875
No 416
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.00044 Score=47.67 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~ 34 (162)
-.=+++.|++|+||||++++++...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3558999999999999999999875
No 417
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.05 E-value=0.0026 Score=49.82 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=45.7
Q ss_pred EEEEEEEeCCCccccc----cchhhhhc---CCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 58 TVKFEIWDTAGQERYH----SLAPMYYR---GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 58 ~~~~~~~D~~g~~~~~----~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
...+.++||+|..... .....++. ...-..+|++.+-. ...+...+..+... . +--++.||.|....
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~~ 372 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETSS 372 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEeccccccc
Confidence 3678999999975442 11122233 22355667777643 12233333332211 1 22577899997432
Q ss_pred ccCCHHHHhhhcCCCCCCeeeccccc
Q 031263 131 RKVTAEARSTSLCPGKWPILYGNLCK 156 (162)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (162)
- -.+...+...++|+.+.+.-.
T Consensus 373 ~----G~i~~~~~~~~lPv~yit~Gq 394 (424)
T PRK05703 373 L----GSILSLLIESGLPISYLTNGQ 394 (424)
T ss_pred c----cHHHHHHHHHCCCEEEEeCCC
Confidence 2 233334444577777765544
No 418
>PRK06217 hypothetical protein; Validated
Probab=97.02 E-value=0.00073 Score=46.73 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
-+|+|+|.+|+||||+.+++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998864
No 419
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.02 E-value=0.0044 Score=42.55 Aligned_cols=85 Identities=22% Similarity=0.171 Sum_probs=56.7
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHH
Q 031263 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (162)
Q Consensus 57 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~ 136 (162)
..+.+.++|+|+... ......+..+|.+++++..+. .++..+..+++.+... +.|+.+|.||+|.... ..+
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 357899999997532 233455688999999988773 4666677777766654 4567899999996432 234
Q ss_pred HHhhhcCCCCCCee
Q 031263 137 ARSTSLCPGKWPIL 150 (162)
Q Consensus 137 ~~~~~~~~~~~~~~ 150 (162)
+.++.+...+.++.
T Consensus 162 ~~~~~~~~~~~~vl 175 (179)
T cd03110 162 EIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHcCCCeE
Confidence 45555555555543
No 420
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.02 E-value=0.00084 Score=47.40 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=22.6
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+.+..-|+|+|++|+|||||++.+...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 345577889999999999999999754
No 421
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.01 E-value=0.00064 Score=48.52 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
-|+++|++|||||||+|-+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4799999999999999987754
No 422
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.99 E-value=0.00066 Score=47.19 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
.=|+|+|++|+|||||+++++...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 448999999999999999998753
No 423
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.97 E-value=0.00054 Score=46.84 Aligned_cols=49 Identities=24% Similarity=0.047 Sum_probs=32.7
Q ss_pred chhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
.....+..+|.+++|+|++++..-.. ..+...+ .+.|+++|.||+|+..
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~ 60 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLAD 60 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCC
Confidence 33556788999999999987643211 1122211 3468999999999854
No 424
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.95 E-value=0.005 Score=45.77 Aligned_cols=106 Identities=13% Similarity=0.282 Sum_probs=61.3
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcc---------------
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE--------------- 70 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------------- 70 (162)
...+.-+++++|+++.|||+++++|....... ..+. .....+.....|...
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED-------------AERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 44566889999999999999999999865432 1111 011233444444311
Q ss_pred ---------ccccchhhhhcCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhCC-CCCeEEEEEeCC
Q 031263 71 ---------RYHSLAPMYYRGAAAAIIVYDITNQ---ASFERAKKWVQELQAQGN-PNMVMALAGNKA 125 (162)
Q Consensus 71 ---------~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~ 125 (162)
.........++....=++++|=-.. .+...-..+++.++..++ -++|++.||++-
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 1122223446667777888874321 122222345555555443 589999999753
No 425
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.95 E-value=0.001 Score=42.90 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFI 36 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~ 36 (162)
-.++++|++|+|||+++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 57899999999999999999876443
No 426
>PRK01889 GTPase RsgA; Reviewed
Probab=96.92 E-value=0.0033 Score=48.16 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=44.1
Q ss_pred hcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
..++|.+++|+++..+-....+..++..+... +++.+||.||+|+.+......+... .. ..+++++.+|+.+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~~~~~~~~-~~-~~g~~Vi~vSa~~g 182 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAEEKIAEVE-AL-APGVPVLAVSALDG 182 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHHHHHHHHH-Hh-CCCCcEEEEECCCC
Confidence 46689999999997443444455665555444 5566889999999653110111111 12 34677777766554
No 427
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.92 E-value=0.00091 Score=44.34 Aligned_cols=22 Identities=18% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.|+|+|..++|||||+..+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998864
No 428
>PRK01889 GTPase RsgA; Reviewed
Probab=96.92 E-value=0.0012 Score=50.45 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQF 35 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~ 35 (162)
-+++++|.+|+|||||+|.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4799999999999999999997543
No 429
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.91 E-value=0.0011 Score=42.85 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~ 33 (162)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999875
No 430
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.90 E-value=0.0011 Score=47.94 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=22.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+..++++|+|.+|+|||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999988864
No 431
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.89 E-value=0.001 Score=45.68 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998765
No 432
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.89 E-value=0.0011 Score=46.00 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999764
No 433
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.87 E-value=0.0013 Score=48.49 Aligned_cols=48 Identities=25% Similarity=0.166 Sum_probs=32.5
Q ss_pred hhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
....+..+|.+++|+|+.++.+-.. .++..+. .+.|+++|.||+|+..
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~ 62 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLAD 62 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCC
Confidence 3455788999999999987643211 1222211 2568999999999854
No 434
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.87 E-value=0.0012 Score=43.65 Aligned_cols=21 Identities=43% Similarity=0.727 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~ 33 (162)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 435
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.86 E-value=0.0065 Score=39.87 Aligned_cols=24 Identities=42% Similarity=0.783 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.--|++.|+.|+|||||++.+...
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 346899999999999999999875
No 436
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.86 E-value=0.0014 Score=46.28 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=22.5
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
++...-|++.|.+|+|||||++.+.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 344577999999999999999998753
No 437
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.82 E-value=0.0014 Score=45.24 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
--.++++|+.|+|||||++.++.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35789999999999999998863
No 438
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.81 E-value=0.0022 Score=48.38 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFI 36 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~ 36 (162)
+.+|++.|..|+|||||+|+++.....
T Consensus 173 r~NILisGGTGSGKTTlLNal~~~i~~ 199 (355)
T COG4962 173 RCNILISGGTGSGKTTLLNALSGFIDS 199 (355)
T ss_pred ceeEEEeCCCCCCHHHHHHHHHhcCCC
Confidence 479999999999999999999976443
No 439
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.81 E-value=0.0012 Score=42.35 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~ 33 (162)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988764
No 440
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.80 E-value=0.0019 Score=44.35 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=29.0
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 84 AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
|++++++|+.++.+-. ...+.+.+. ....+.|+++|.||+|+.++.
T Consensus 1 DvVl~VvDar~p~~~~-~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~ 46 (172)
T cd04178 1 DVILEVLDARDPLGCR-CPQVEEAVL-QAGGNKKLVLVLNKIDLVPKE 46 (172)
T ss_pred CEEEEEEECCCCCCCC-CHHHHHHHH-hccCCCCEEEEEehhhcCCHH
Confidence 6899999998863211 122333321 122467999999999996543
No 441
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.80 E-value=0.0012 Score=48.05 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 031263 13 LVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~ 32 (162)
++++|+.|+|||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999987
No 442
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.79 E-value=0.0013 Score=45.16 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
-|+++|++|+|||||++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
No 443
>PRK03839 putative kinase; Provisional
Probab=96.78 E-value=0.0015 Score=44.93 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
+|+++|.+|+||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999888754
No 444
>PRK14530 adenylate kinase; Provisional
Probab=96.78 E-value=0.0015 Score=46.37 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
+|+|+|.+|+||||+.+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 445
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.77 E-value=0.0013 Score=47.07 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
-|+++|++|+|||||++.+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 379999999999999998887
No 446
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.75 E-value=0.0015 Score=41.17 Aligned_cols=21 Identities=33% Similarity=0.719 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 031263 11 AKLVLLGDVGAGKSSLVLRFV 31 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~ 31 (162)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 468999999999999999876
No 447
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.75 E-value=0.002 Score=44.21 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+..-+.++|.+|+|||||++++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3446899999999999999999965
No 448
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.74 E-value=0.0017 Score=45.08 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~ 34 (162)
.-.++++|++|+|||||++.+.+.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4579999999999999999988753
No 449
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.74 E-value=0.0014 Score=49.62 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~~ 34 (162)
++++|++|||||||++.+.+-+
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998754
No 450
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.73 E-value=0.032 Score=41.54 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=43.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhc--CCcEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR--GAAAAII 88 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~i~ 88 (162)
-.|++.|.+|+||||+++.+-...+.. +++ .....+..+...... ..+.+.+
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~~~g~~~----------------~d~----------~~~~L~~~l~~~~~~~~~~~~~av 60 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALEDLGYYC----------------VDN----------LPPSLLPKLVELLAQSGGIRKVAV 60 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHHHcCCeE----------------ECC----------cCHHHHHHHHHHHHhcCCCCCeEE
Confidence 479999999999999999985322110 111 111112222222222 1355777
Q ss_pred EEECCChHHHHHHHHHHHHHHHh
Q 031263 89 VYDITNQASFERAKKWVQELQAQ 111 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~ 111 (162)
++|+.+...+......+..+...
T Consensus 61 ~iD~r~~~~~~~~~~~~~~L~~~ 83 (288)
T PRK05416 61 VIDVRSRPFFDDLPEALDELRER 83 (288)
T ss_pred EEccCchhhHHHHHHHHHHHHHc
Confidence 78888765455566666666654
No 451
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.72 E-value=0.0014 Score=46.31 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
=.++||++|+|||||++.+-.
T Consensus 35 VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999987653
No 452
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.72 E-value=0.0017 Score=46.11 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57999999999999999998753
No 453
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.71 E-value=0.0022 Score=45.28 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=22.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.+...|++.|.+|+|||||.+.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999988764
No 454
>PRK13949 shikimate kinase; Provisional
Probab=96.71 E-value=0.0019 Score=44.21 Aligned_cols=21 Identities=33% Similarity=0.657 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
+|+++|.+|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999987765
No 455
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.70 E-value=0.012 Score=41.20 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~~ 34 (162)
|++.|++|+||||+++.++..-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999988654
No 456
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.68 E-value=0.0019 Score=42.40 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988754
No 457
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.68 E-value=0.0017 Score=44.71 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~ 32 (162)
--|+++|.+|+||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998873
No 458
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.67 E-value=0.0018 Score=45.23 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~ 33 (162)
|.+.|.+|+|||||.+.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998764
No 459
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.67 E-value=0.0025 Score=44.07 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQF 35 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~ 35 (162)
=.++++|++|+|||||+|-+.+=..
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC
Confidence 4689999999999999998876443
No 460
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.67 E-value=0.0019 Score=45.52 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 461
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.67 E-value=0.0018 Score=45.02 Aligned_cols=23 Identities=48% Similarity=0.582 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+-.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999888753
No 462
>PRK10646 ADP-binding protein; Provisional
Probab=96.66 E-value=0.019 Score=38.65 Aligned_cols=22 Identities=36% Similarity=0.720 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
-|++-|+-|+|||||.+.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999764
No 463
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.66 E-value=0.002 Score=45.33 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
=.++++|+.|+|||||++.+.+-.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 464
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.66 E-value=0.0019 Score=45.70 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999753
No 465
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.65 E-value=0.0017 Score=44.47 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=17.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
..-.++|.|.+|+|||+|++++...
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999987753
No 466
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.65 E-value=0.012 Score=44.40 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~ 34 (162)
+.+|++.|.+|+|||||+++++..-
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999754
No 467
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.65 E-value=0.019 Score=42.21 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
-|+|.|.+|+||||+++.++..-
T Consensus 82 lilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhh
Confidence 48999999999999999998754
No 468
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.64 E-value=0.015 Score=45.91 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=32.8
Q ss_pred ccchhhhhcCCcEEEEEEECC-ChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCC
Q 031263 73 HSLAPMYYRGAAAAIIVYDIT-NQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127 (162)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 127 (162)
-.+.+..|++++.+|+ |=- .--+..++++++..+.+.......++++-+|.+.
T Consensus 149 VEIlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~E 202 (501)
T COG3845 149 VEILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKE 202 (501)
T ss_pred HHHHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH
Confidence 3555666787886664 311 1113455666666666665567789999888764
No 469
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.64 E-value=0.0018 Score=48.10 Aligned_cols=58 Identities=22% Similarity=0.114 Sum_probs=36.6
Q ss_pred CCCccc-cccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 66 TAGQER-YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 66 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
+|||.. -.......+..+|++++|+|+.++.+-+. .++..+. .+.|+++|.||+|+..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~ 65 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLAD 65 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCC
Confidence 566532 12233455788999999999987643221 2222221 2578999999999854
No 470
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.63 E-value=0.0018 Score=45.65 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999875
No 471
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.63 E-value=0.0021 Score=45.67 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
=.++++|+.|+|||||++.+.+-
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998875
No 472
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.63 E-value=0.0021 Score=46.20 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 473
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.61 E-value=0.013 Score=44.70 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=23.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQF 35 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~ 35 (162)
...+|+|.|..|+|||||++++++.-.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccC
Confidence 457899999999999999999997543
No 474
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.0022 Score=45.18 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999753
No 475
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.61 E-value=0.0022 Score=45.31 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988875
No 476
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.002 Score=46.75 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
-++++|+.|+|||||++.+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999998
No 477
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.60 E-value=0.0023 Score=44.93 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 478
>PRK08233 hypothetical protein; Provisional
Probab=96.60 E-value=0.0022 Score=43.94 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
.-|++.|.+|+|||||.+++...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56788899999999999999854
No 479
>PRK14531 adenylate kinase; Provisional
Probab=96.60 E-value=0.0026 Score=43.96 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+.+|+++|.+|+||||+.+.+...
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999888653
No 480
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.60 E-value=0.0021 Score=45.81 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
-++++|..|+|||||++++.+-.
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999753
No 481
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.60 E-value=0.0021 Score=41.53 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
--+++.|.+|+|||++++++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999975
No 482
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.59 E-value=0.0023 Score=45.18 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 483
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.0023 Score=45.19 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998875
No 484
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.59 E-value=0.0022 Score=49.80 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
...+|+|+|.+|+|||||+++|...
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999864
No 485
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.0024 Score=45.41 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998753
No 486
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.58 E-value=0.0025 Score=45.53 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999998764
No 487
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.58 E-value=0.0023 Score=46.11 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999988653
No 488
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.58 E-value=0.0024 Score=45.06 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
=.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998753
No 489
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.57 E-value=0.0025 Score=44.49 Aligned_cols=23 Identities=30% Similarity=0.262 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|..|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998864
No 490
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.56 E-value=0.0035 Score=44.47 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
=.++++|+.|+|||||++.+.+..
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 368899999999999999988754
No 491
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.56 E-value=0.015 Score=38.79 Aligned_cols=23 Identities=48% Similarity=0.775 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
-=|++-|+-|+|||||.+.+..+
T Consensus 26 ~Vv~L~GdLGAGKTtf~rgi~~~ 48 (149)
T COG0802 26 DVVLLSGDLGAGKTTLVRGIAKG 48 (149)
T ss_pred CEEEEEcCCcCChHHHHHHHHHH
Confidence 45789999999999999988864
No 492
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.56 E-value=0.0025 Score=45.66 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
=.++++|+.|+|||||++.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998753
No 493
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.56 E-value=0.0024 Score=44.81 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.--|+++|++|+|||||++.+.+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 456899999999999999998875
No 494
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.56 E-value=0.0025 Score=45.27 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998763
No 495
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.55 E-value=0.0025 Score=45.15 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
=.++++|..|+|||||++.+.+-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 358999999999999999998753
No 496
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0027 Score=43.67 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
=.++++|+.|+|||||++.+.+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999865
No 497
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.0026 Score=48.86 Aligned_cols=119 Identities=18% Similarity=0.139 Sum_probs=68.2
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhC----------CCC----C-----------------CC--ccceeeEEEEEEE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKG----------QFI----E-----------------FQ--ESTIGAAFFSQTL 52 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~----------~~~----~-----------------~~--~~~~~~~~~~~~~ 52 (162)
+++..++++++|.-.+||||+-.+++.. +|. . .. ..+.+ .....
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvE--vGrA~- 151 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVE--VGRAY- 151 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceee--eeeEE-
Confidence 4567899999999999999987655421 000 0 00 01111 11111
Q ss_pred EECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHH---HHHHHHHHHHHHH-hCCCCCeEEEEEeCCCCc
Q 031263 53 AVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---FERAKKWVQELQA-QGNPNMVMALAGNKADLL 128 (162)
Q Consensus 53 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~ 128 (162)
+.-...++++.|.||+..|......-..++|.-++|+++...+. |+.--+-..+..- ....-...+++.||+|-.
T Consensus 152 -FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddP 230 (501)
T KOG0459|consen 152 -FETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 230 (501)
T ss_pred -EEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCC
Confidence 12233678999999998876544445567888888888764322 2111122222211 112345688889999963
No 498
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.54 E-value=0.0038 Score=42.33 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=54.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEE-CC----eEEEEEEEeCCCcc-ccccchhhhhcCCc
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-ND----ATVKFEIWDTAGQE-RYHSLAPMYYRGAA 84 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~D~~g~~-~~~~~~~~~~~~~~ 84 (162)
=.++++|+.|+|||||++.+.+...+.. ..+..+ ...+.. +. ...--.+.+.+|.+ +--.+....+.+++
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~--G~v~~~--g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDS--GEILVD--GKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCC--eEEEEC--CEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 3688999999999999998887543211 111100 111100 00 00011122344433 33344556677777
Q ss_pred EEEE--EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCC
Q 031263 85 AAII--VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125 (162)
Q Consensus 85 ~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~ 125 (162)
.+++ -++.-|+.+...+..++..+.. ....++++-+..
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~ 142 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRA---QGVAVIFISHRL 142 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCH
Confidence 6665 3333355665666666655532 244555554433
No 499
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.54 E-value=0.0025 Score=45.29 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
=.++++|+.|+|||||++.+.+-.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999887653
No 500
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.53 E-value=0.0023 Score=44.34 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
+|+|+|.+|+||||+.+.+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988754
Done!