Query 031263
Match_columns 162
No_of_seqs 119 out of 1350
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 18:34:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.4E-38 4.9E-43 224.8 15.5 158 1-158 1-161 (216)
2 2efe_B Small GTP-binding prote 100.0 4.4E-33 1.5E-37 190.6 19.5 157 1-157 3-159 (181)
3 1r2q_A RAS-related protein RAB 100.0 2.9E-32 1E-36 184.4 18.8 153 6-158 2-154 (170)
4 2ew1_A RAS-related protein RAB 100.0 1.6E-32 5.4E-37 191.9 17.1 153 6-158 22-174 (201)
5 1z0j_A RAB-22, RAS-related pro 100.0 8.8E-32 3E-36 182.2 19.9 152 7-158 3-154 (170)
6 2fu5_C RAS-related protein RAB 100.0 6.2E-33 2.1E-37 190.4 14.3 151 7-157 5-155 (183)
7 2hup_A RAS-related protein RAB 100.0 2E-32 6.7E-37 191.2 16.9 152 6-157 25-177 (201)
8 2a5j_A RAS-related protein RAB 100.0 3E-32 1E-36 188.6 17.5 153 5-157 16-168 (191)
9 2bcg_Y Protein YP2, GTP-bindin 100.0 8.9E-32 3E-36 188.1 19.5 152 6-157 4-155 (206)
10 3tkl_A RAS-related protein RAB 100.0 1.1E-31 3.9E-36 185.8 19.5 153 6-158 12-164 (196)
11 2fg5_A RAB-22B, RAS-related pr 100.0 7.9E-32 2.7E-36 186.7 18.5 153 6-158 19-171 (192)
12 2bme_A RAB4A, RAS-related prot 100.0 6.1E-32 2.1E-36 185.8 17.8 153 6-158 6-158 (186)
13 1z08_A RAS-related protein RAB 100.0 2.6E-32 8.7E-37 185.0 15.5 151 7-157 3-153 (170)
14 1z0f_A RAB14, member RAS oncog 100.0 8.5E-32 2.9E-36 183.7 18.1 153 6-158 11-163 (179)
15 2gf9_A RAS-related protein RAB 100.0 1.4E-31 4.9E-36 184.8 19.0 153 6-158 18-170 (189)
16 3tw8_B RAS-related protein RAB 100.0 1E-31 3.6E-36 183.5 18.0 153 5-158 4-156 (181)
17 1ek0_A Protein (GTP-binding pr 100.0 1.2E-31 4.1E-36 181.4 18.0 150 9-158 2-154 (170)
18 2g6b_A RAS-related protein RAB 100.0 1.4E-31 4.9E-36 183.0 18.0 154 4-157 4-158 (180)
19 3cpj_B GTP-binding protein YPT 100.0 6.7E-32 2.3E-36 191.2 16.7 151 7-157 10-160 (223)
20 3t5g_A GTP-binding protein RHE 100.0 2.6E-31 8.8E-36 182.0 18.3 150 7-157 3-153 (181)
21 1z06_A RAS-related protein RAB 100.0 2.1E-31 7.3E-36 183.9 18.0 151 7-157 17-169 (189)
22 2oil_A CATX-8, RAS-related pro 100.0 2E-31 6.7E-36 184.6 17.7 152 6-157 21-172 (193)
23 2il1_A RAB12; G-protein, GDP, 100.0 8.6E-32 3E-36 186.6 15.8 153 5-157 21-174 (192)
24 1zbd_A Rabphilin-3A; G protein 100.0 3E-31 1E-35 185.0 18.5 152 7-158 5-156 (203)
25 3kkq_A RAS-related protein M-R 100.0 2.7E-31 9.2E-36 182.3 17.6 149 6-155 14-163 (183)
26 2y8e_A RAB-protein 6, GH09086P 100.0 1.7E-31 5.8E-36 182.2 16.5 150 8-157 12-161 (179)
27 1z2a_A RAS-related protein RAB 100.0 1.4E-31 4.9E-36 180.8 16.0 150 8-158 3-152 (168)
28 2o52_A RAS-related protein RAB 100.0 9.5E-32 3.2E-36 187.5 15.3 153 6-158 21-173 (200)
29 1wms_A RAB-9, RAB9, RAS-relate 100.0 7.9E-31 2.7E-35 178.8 19.4 151 6-157 3-158 (177)
30 3dz8_A RAS-related protein RAB 100.0 1.7E-32 5.7E-37 189.9 10.6 154 5-158 18-171 (191)
31 2fn4_A P23, RAS-related protei 100.0 6E-31 2.1E-35 179.7 18.0 153 5-158 4-157 (181)
32 1g16_A RAS-related protein SEC 100.0 2.9E-31 1E-35 179.6 16.1 149 9-158 2-150 (170)
33 3c5c_A RAS-like protein 12; GD 100.0 2.9E-31 9.8E-36 183.3 16.1 150 6-157 17-169 (187)
34 3bc1_A RAS-related protein RAB 100.0 4.9E-31 1.7E-35 182.0 17.1 153 6-158 7-170 (195)
35 2hxs_A RAB-26, RAS-related pro 100.0 8.7E-32 3E-36 183.7 12.9 151 7-157 3-157 (178)
36 3q3j_B RHO-related GTP-binding 100.0 3.1E-31 1.1E-35 186.9 16.0 151 6-158 23-187 (214)
37 3cbq_A GTP-binding protein REM 100.0 2.1E-31 7.3E-36 185.2 14.1 153 6-158 19-173 (195)
38 2p5s_A RAS and EF-hand domain 100.0 2.1E-31 7.2E-36 185.5 14.0 152 6-157 24-181 (199)
39 1vg8_A RAS-related protein RAB 100.0 2.4E-30 8.2E-35 180.7 17.9 152 6-158 4-160 (207)
40 1x3s_A RAS-related protein RAB 100.0 3E-30 1E-34 178.4 18.1 151 6-157 11-162 (195)
41 3cph_A RAS-related protein SEC 100.0 3.2E-30 1.1E-34 180.8 18.3 151 7-158 17-167 (213)
42 3reg_A RHO-like small GTPase; 100.0 3.3E-30 1.1E-34 178.6 18.0 150 6-157 19-172 (194)
43 3q85_A GTP-binding protein REM 100.0 1.5E-30 5.1E-35 176.2 15.7 149 10-158 2-152 (169)
44 3oes_A GTPase rhebl1; small GT 100.0 9E-31 3.1E-35 182.6 14.8 149 8-157 22-171 (201)
45 1c1y_A RAS-related protein RAP 100.0 2.3E-30 7.9E-35 174.7 15.9 148 9-157 2-151 (167)
46 1ky3_A GTP-binding protein YPT 100.0 1.4E-30 4.7E-35 178.1 15.0 152 6-157 4-162 (182)
47 2f7s_A C25KG, RAS-related prot 100.0 5.8E-31 2E-35 185.3 13.5 152 6-157 21-183 (217)
48 3clv_A RAB5 protein, putative; 100.0 6.7E-30 2.3E-34 177.5 18.5 149 7-158 4-189 (208)
49 2nzj_A GTP-binding protein REM 100.0 2.7E-30 9.2E-35 175.7 15.8 149 9-158 3-154 (175)
50 2a9k_A RAS-related protein RAL 100.0 4E-30 1.4E-34 176.5 16.6 152 6-158 14-166 (187)
51 3ihw_A Centg3; RAS, centaurin, 100.0 5.1E-30 1.8E-34 176.7 17.1 145 6-157 16-164 (184)
52 1u8z_A RAS-related protein RAL 100.0 3.3E-30 1.1E-34 173.8 15.8 149 9-158 3-152 (168)
53 2yc2_C IFT27, small RAB-relate 100.0 4.2E-31 1.4E-35 184.4 11.7 149 8-156 18-174 (208)
54 1kao_A RAP2A; GTP-binding prot 100.0 4.3E-30 1.5E-34 173.1 15.8 148 9-157 2-150 (167)
55 2bov_A RAla, RAS-related prote 100.0 5.9E-30 2E-34 178.5 16.9 150 8-158 12-162 (206)
56 1m7b_A RND3/RHOE small GTP-bin 100.0 4.2E-30 1.4E-34 176.8 15.9 147 7-155 4-164 (184)
57 3q72_A GTP-binding protein RAD 100.0 6E-30 2.1E-34 172.8 16.2 147 10-158 2-149 (166)
58 4djt_A GTP-binding nuclear pro 100.0 2.1E-30 7.2E-35 182.6 14.5 154 5-158 6-160 (218)
59 2atx_A Small GTP binding prote 100.0 7.3E-30 2.5E-34 176.8 16.9 149 7-157 15-177 (194)
60 3l0i_B RAS-related protein RAB 100.0 5.4E-32 1.8E-36 188.5 6.0 152 6-157 29-180 (199)
61 2iwr_A Centaurin gamma 1; ANK 100.0 8.8E-30 3E-34 174.0 16.0 143 8-157 5-153 (178)
62 1gwn_A RHO-related GTP-binding 100.0 7E-30 2.4E-34 178.9 15.6 148 6-155 24-185 (205)
63 2atv_A RERG, RAS-like estrogen 100.0 8.5E-30 2.9E-34 176.9 15.6 150 7-158 25-175 (196)
64 2g3y_A GTP-binding protein GEM 100.0 6E-30 2E-34 180.1 14.9 152 7-158 34-188 (211)
65 2q3h_A RAS homolog gene family 100.0 1.5E-29 5.3E-34 176.0 16.4 150 6-157 16-179 (201)
66 4dsu_A GTPase KRAS, isoform 2B 100.0 5.8E-29 2E-33 171.1 17.9 149 8-158 2-151 (189)
67 2erx_A GTP-binding protein DI- 100.0 1.6E-29 5.3E-34 171.3 14.8 149 9-158 2-152 (172)
68 1mh1_A RAC1; GTP-binding, GTPa 100.0 3.7E-29 1.3E-33 171.6 16.8 148 8-157 3-164 (186)
69 4gzl_A RAS-related C3 botulinu 100.0 2.2E-29 7.7E-34 176.0 15.3 151 5-157 25-189 (204)
70 3t1o_A Gliding protein MGLA; G 100.0 1.3E-29 4.6E-34 175.3 13.7 150 5-158 9-177 (198)
71 2j1l_A RHO-related GTP-binding 100.0 2.6E-29 8.8E-34 176.9 15.2 148 8-157 32-193 (214)
72 2gco_A H9, RHO-related GTP-bin 100.0 6E-29 2.1E-33 173.4 16.9 148 8-157 23-184 (201)
73 2j0v_A RAC-like GTP-binding pr 100.0 1.1E-29 3.9E-34 178.1 13.3 148 8-157 7-164 (212)
74 3gj0_A GTP-binding nuclear pro 100.0 1.1E-29 3.6E-34 179.5 12.6 149 6-157 11-159 (221)
75 2gf0_A GTP-binding protein DI- 100.0 5.3E-29 1.8E-33 172.8 15.3 151 5-157 3-155 (199)
76 3con_A GTPase NRAS; structural 100.0 1.8E-28 6E-33 169.2 17.7 149 8-158 19-168 (190)
77 2fv8_A H6, RHO-related GTP-bin 100.0 1.7E-28 5.8E-33 171.8 16.9 148 8-157 23-184 (207)
78 2cjw_A GTP-binding protein GEM 100.0 1.8E-28 6.1E-33 170.1 16.7 150 8-158 4-157 (192)
79 2ce2_X GTPase HRAS; signaling 100.0 2.4E-28 8.1E-33 164.3 16.8 146 10-157 3-149 (166)
80 3bwd_D RAC-like GTP-binding pr 100.0 1E-29 3.4E-34 174.0 8.9 148 8-157 6-165 (182)
81 4bas_A ADP-ribosylation factor 100.0 1.9E-28 6.4E-33 170.0 14.6 149 6-158 13-174 (199)
82 1r8s_A ADP-ribosylation factor 100.0 1.5E-28 5.3E-33 165.5 13.3 143 11-158 1-147 (164)
83 1upt_A ARL1, ADP-ribosylation 100.0 4.6E-28 1.6E-32 164.1 15.1 146 8-158 5-154 (171)
84 1m2o_B GTP-binding protein SAR 100.0 1.9E-27 6.5E-32 164.5 18.2 143 8-157 21-176 (190)
85 1zd9_A ADP-ribosylation factor 100.0 5.9E-28 2E-32 166.6 15.5 144 8-157 20-169 (188)
86 1f6b_A SAR1; gtpases, N-termin 100.0 4.9E-28 1.7E-32 168.6 14.8 129 8-143 23-152 (198)
87 2b6h_A ADP-ribosylation factor 100.0 3.7E-28 1.3E-32 168.4 13.8 146 7-157 26-175 (192)
88 2f9l_A RAB11B, member RAS onco 100.0 3.9E-27 1.3E-31 164.0 18.5 149 8-156 3-151 (199)
89 1ksh_A ARF-like protein 2; sma 100.0 1.8E-27 6.2E-32 163.6 16.5 144 8-158 16-165 (186)
90 2zej_A Dardarin, leucine-rich 100.0 1.2E-28 4.2E-33 169.6 10.5 147 10-157 2-161 (184)
91 2h17_A ADP-ribosylation factor 100.0 2.9E-28 1E-32 167.2 12.4 146 6-158 17-168 (181)
92 2h57_A ADP-ribosylation factor 100.0 2.2E-27 7.6E-32 163.8 16.5 146 7-158 18-172 (190)
93 1zj6_A ADP-ribosylation factor 100.0 6.7E-28 2.3E-32 166.1 12.8 144 8-158 14-163 (187)
94 1oix_A RAS-related protein RAB 100.0 1.1E-26 3.8E-31 160.8 17.9 150 7-156 26-175 (191)
95 1fzq_A ADP-ribosylation factor 100.0 2E-27 6.7E-32 163.2 14.0 144 8-158 14-163 (181)
96 2x77_A ADP-ribosylation factor 100.0 7.2E-28 2.4E-32 166.1 10.9 145 8-157 20-168 (189)
97 3llu_A RAS-related GTP-binding 99.9 1.2E-27 4.1E-32 166.1 10.4 147 6-156 16-181 (196)
98 1moz_A ARL1, ADP-ribosylation 99.9 1.4E-27 4.9E-32 163.5 9.6 144 8-158 16-165 (183)
99 2wkq_A NPH1-1, RAS-related C3 99.9 2.4E-26 8.2E-31 170.9 16.5 148 8-157 153-314 (332)
100 3th5_A RAS-related C3 botulinu 99.9 2.1E-29 7.2E-34 175.9 0.0 149 7-157 27-189 (204)
101 3r7w_A Gtpase1, GTP-binding pr 99.9 3.7E-26 1.2E-30 169.1 13.2 145 9-156 2-165 (307)
102 3r7w_B Gtpase2, GTP-binding pr 99.9 1.4E-26 4.9E-31 171.1 10.0 139 12-157 1-158 (331)
103 2fh5_B SR-beta, signal recogni 99.9 1.2E-25 4E-30 157.9 13.7 123 6-131 3-131 (214)
104 3c5h_A Glucocorticoid receptor 99.9 2.6E-27 9.1E-32 171.0 4.6 151 6-158 15-240 (255)
105 3o47_A ADP-ribosylation factor 99.9 1.2E-25 4.2E-30 167.6 11.9 146 8-158 163-312 (329)
106 3lvq_E ARF-GAP with SH3 domain 99.9 2.7E-25 9.2E-30 173.9 14.3 144 8-158 320-469 (497)
107 2wji_A Ferrous iron transport 99.9 4.7E-25 1.6E-29 149.2 11.0 140 10-158 3-150 (165)
108 2lkc_A Translation initiation 99.9 7.6E-25 2.6E-29 149.2 11.7 115 7-130 5-122 (178)
109 1nrj_B SR-beta, signal recogni 99.9 5.5E-26 1.9E-30 160.0 4.2 119 7-134 9-139 (218)
110 3dpu_A RAB family protein; roc 99.9 4.8E-25 1.6E-29 173.9 8.6 148 7-158 38-193 (535)
111 2qu8_A Putative nucleolar GTP- 99.9 4.3E-24 1.5E-28 151.5 12.5 147 8-157 27-189 (228)
112 2wjg_A FEOB, ferrous iron tran 99.9 4E-24 1.4E-28 146.9 9.8 140 9-157 6-153 (188)
113 2gj8_A MNME, tRNA modification 99.9 5.8E-24 2E-28 144.8 10.2 140 8-157 2-150 (172)
114 1svi_A GTP-binding protein YSX 99.9 9.8E-24 3.4E-28 145.8 10.3 143 8-157 21-179 (195)
115 2dyk_A GTP-binding protein; GT 99.9 4.8E-23 1.7E-27 138.0 12.3 136 11-157 2-146 (161)
116 2ged_A SR-beta, signal recogni 99.9 8.5E-24 2.9E-28 146.0 8.7 118 7-133 45-174 (193)
117 3a1s_A Iron(II) transport prot 99.9 3.3E-23 1.1E-27 149.7 10.8 143 8-159 3-153 (258)
118 2cxx_A Probable GTP-binding pr 99.9 1.3E-23 4.3E-28 144.5 5.3 115 11-131 2-138 (190)
119 3iby_A Ferrous iron transport 99.9 5.7E-23 1.9E-27 148.4 8.1 139 11-158 2-152 (256)
120 3iev_A GTP-binding protein ERA 99.9 2.3E-22 7.7E-27 148.8 11.5 149 5-157 5-166 (308)
121 3i8s_A Ferrous iron transport 99.9 7.7E-23 2.6E-27 149.0 7.9 141 9-158 2-154 (274)
122 3pqc_A Probable GTP-binding pr 99.9 3.3E-22 1.1E-26 137.8 10.6 142 7-158 20-179 (195)
123 3b1v_A Ferrous iron uptake tra 99.9 7.6E-23 2.6E-27 148.8 7.0 140 9-158 2-149 (272)
124 1wf3_A GTP-binding protein; GT 99.9 2.1E-21 7.3E-26 143.1 13.7 120 8-132 5-134 (301)
125 3k53_A Ferrous iron transport 99.9 1E-21 3.6E-26 142.8 10.1 142 9-158 2-151 (271)
126 3gee_A MNME, tRNA modification 99.9 2.9E-21 9.8E-26 150.1 10.2 142 9-157 232-382 (476)
127 4dhe_A Probable GTP-binding pr 99.8 4E-22 1.4E-26 140.5 4.6 146 8-157 27-195 (223)
128 2hjg_A GTP-binding protein ENG 99.8 2.5E-21 8.5E-26 149.4 9.2 144 8-157 173-333 (436)
129 3qq5_A Small GTP-binding prote 99.8 6.2E-21 2.1E-25 146.1 9.1 142 7-157 31-180 (423)
130 3lxx_A GTPase IMAP family memb 99.8 3.6E-20 1.2E-24 132.2 12.3 124 7-134 26-164 (239)
131 3def_A T7I23.11 protein; chlor 99.8 7.1E-20 2.4E-24 132.5 13.2 124 9-135 35-171 (262)
132 3ohm_A Guanine nucleotide-bind 99.8 5.6E-20 1.9E-24 136.4 12.7 84 58-141 166-276 (327)
133 1cip_A Protein (guanine nucleo 99.8 5.6E-20 1.9E-24 138.0 12.4 106 50-157 186-328 (353)
134 2qag_A Septin-2, protein NEDD5 99.8 5.8E-21 2E-25 144.0 6.9 146 9-158 36-219 (361)
135 4dcu_A GTP-binding protein ENG 99.8 7.1E-21 2.4E-25 147.5 7.6 144 8-157 193-353 (456)
136 2e87_A Hypothetical protein PH 99.8 1.4E-19 4.8E-24 136.3 13.3 145 8-157 165-320 (357)
137 3lxw_A GTPase IMAP family memb 99.8 3.3E-20 1.1E-24 133.2 9.3 121 7-129 18-153 (247)
138 3sjy_A Translation initiation 99.8 4.1E-19 1.4E-23 135.7 15.2 150 6-158 4-177 (403)
139 1mky_A Probable GTP-binding pr 99.8 7.2E-20 2.5E-24 141.3 11.0 138 11-158 2-151 (439)
140 3p26_A Elongation factor 1 alp 99.8 3.4E-20 1.2E-24 144.6 9.3 147 8-158 31-223 (483)
141 3t5d_A Septin-7; GTP-binding p 99.8 2.2E-20 7.5E-25 136.0 7.4 146 7-156 5-187 (274)
142 3j2k_7 ERF3, eukaryotic polype 99.8 1.1E-19 3.6E-24 140.3 11.2 122 6-129 13-169 (439)
143 1xzp_A Probable tRNA modificat 99.8 3.8E-20 1.3E-24 143.9 8.6 137 10-157 243-389 (482)
144 1s0u_A EIF-2-gamma, translatio 99.8 6.3E-19 2.1E-23 134.9 15.0 146 6-157 4-182 (408)
145 1lnz_A SPO0B-associated GTP-bi 99.8 2.8E-20 9.5E-25 139.1 5.8 142 11-157 159-314 (342)
146 1h65_A Chloroplast outer envel 99.8 1.5E-19 5.1E-24 131.3 9.2 123 9-134 38-173 (270)
147 2xtp_A GTPase IMAP family memb 99.8 1.4E-18 4.7E-23 125.4 13.5 122 7-130 19-154 (260)
148 3geh_A MNME, tRNA modification 99.8 1.2E-19 4.2E-24 140.5 8.0 137 9-157 223-368 (462)
149 2hjg_A GTP-binding protein ENG 99.8 1E-19 3.4E-24 140.4 7.2 116 10-130 3-126 (436)
150 1kk1_A EIF2gamma; initiation o 99.8 1.5E-18 5.2E-23 132.9 13.7 147 6-158 6-185 (410)
151 3izy_P Translation initiation 99.8 5.5E-21 1.9E-25 149.9 -0.0 118 8-130 2-119 (537)
152 1jny_A EF-1-alpha, elongation 99.8 5E-20 1.7E-24 142.0 5.2 148 8-158 4-198 (435)
153 1zun_B Sulfate adenylate trans 99.8 1.1E-18 3.6E-23 134.6 12.5 146 8-158 22-209 (434)
154 2xtz_A Guanine nucleotide-bind 99.8 4E-19 1.4E-23 133.3 9.1 74 57-130 181-265 (354)
155 1ega_A Protein (GTP-binding pr 99.8 2.1E-18 7.3E-23 127.1 12.8 139 9-154 7-156 (301)
156 3izq_1 HBS1P, elongation facto 99.8 9.8E-20 3.4E-24 145.3 6.1 150 7-159 164-358 (611)
157 1wb1_A Translation elongation 99.8 6.3E-19 2.2E-23 137.3 10.0 141 8-157 17-173 (482)
158 1r5b_A Eukaryotic peptide chai 99.8 9.6E-20 3.3E-24 141.5 4.7 120 8-129 41-195 (467)
159 3cb4_D GTP-binding protein LEP 99.8 1.7E-18 5.9E-23 137.6 11.6 145 9-157 3-166 (599)
160 2c78_A Elongation factor TU-A; 99.8 2.2E-19 7.6E-24 137.3 6.2 147 7-157 8-178 (405)
161 4dcu_A GTP-binding protein ENG 99.8 2.7E-19 9.2E-24 138.7 6.7 116 9-129 22-145 (456)
162 2aka_B Dynamin-1; fusion prote 99.8 1E-18 3.5E-23 128.2 9.5 148 8-159 24-238 (299)
163 2ywe_A GTP-binding protein LEP 99.8 3.4E-18 1.2E-22 135.7 13.0 120 8-131 4-141 (600)
164 4fid_A G protein alpha subunit 99.8 1.7E-18 5.9E-23 128.9 10.2 73 57-129 159-242 (340)
165 1zo1_I IF2, translation initia 99.8 3.4E-20 1.2E-24 144.4 1.0 117 8-130 2-118 (501)
166 1mky_A Probable GTP-binding pr 99.8 6.6E-18 2.2E-22 130.4 13.5 144 8-157 178-339 (439)
167 1f60_A Elongation factor EEF1A 99.8 1E-19 3.5E-24 141.0 3.2 148 7-159 4-198 (458)
168 2qtf_A Protein HFLX, GTP-bindi 99.8 5E-18 1.7E-22 128.0 12.3 117 11-130 179-307 (364)
169 1d2e_A Elongation factor TU (E 99.8 7.6E-19 2.6E-23 134.0 7.6 145 9-157 2-169 (397)
170 3t34_A Dynamin-related protein 99.7 1.2E-17 3.9E-22 126.0 10.6 144 10-155 34-243 (360)
171 1g7s_A Translation initiation 99.7 5.8E-18 2E-22 134.6 9.0 115 8-129 3-136 (594)
172 2elf_A Protein translation elo 99.7 4.1E-18 1.4E-22 128.8 7.2 129 12-156 23-160 (370)
173 3tr5_A RF-3, peptide chain rel 99.7 2.9E-18 9.9E-23 134.7 5.8 117 8-130 11-149 (528)
174 3avx_A Elongation factor TS, e 99.7 7.7E-18 2.7E-22 140.5 6.8 147 7-157 293-462 (1289)
175 3mca_A HBS1, elongation factor 99.7 5.5E-19 1.9E-23 140.6 -0.2 148 7-159 174-369 (592)
176 2xex_A Elongation factor G; GT 99.7 7.7E-17 2.6E-21 130.4 11.9 124 1-130 1-142 (693)
177 1jwy_B Dynamin A GTPase domain 99.7 7.9E-17 2.7E-21 119.1 10.4 145 8-155 22-238 (315)
178 1dar_A EF-G, elongation factor 99.7 5.1E-17 1.7E-21 131.4 9.4 119 5-131 7-145 (691)
179 2h5e_A Peptide chain release f 99.7 3.6E-17 1.2E-21 128.6 8.1 120 8-131 11-150 (529)
180 2rdo_7 EF-G, elongation factor 99.7 6.4E-16 2.2E-20 125.2 13.9 127 1-131 1-150 (704)
181 1n0u_A EF-2, elongation factor 99.7 1.8E-16 6.2E-21 130.6 10.6 118 7-128 16-163 (842)
182 2qag_C Septin-7; cell cycle, c 99.7 7.6E-17 2.6E-21 123.3 7.4 146 8-157 29-211 (418)
183 1zcb_A G alpha I/13; GTP-bindi 99.7 3.6E-16 1.2E-20 117.7 9.5 86 40-129 186-282 (362)
184 2j69_A Bacterial dynamin-like 99.7 7.3E-16 2.5E-20 124.7 11.9 121 8-131 67-246 (695)
185 1u0l_A Probable GTPase ENGC; p 99.6 1.4E-17 4.9E-22 122.7 0.7 122 25-158 32-158 (301)
186 1pui_A ENGB, probable GTP-bind 99.6 2E-16 7E-21 110.2 6.3 114 8-130 24-152 (210)
187 2qpt_A EH domain-containing pr 99.6 8.9E-17 3.1E-21 127.0 4.8 123 8-133 63-236 (550)
188 1wxq_A GTP-binding protein; st 99.6 2.6E-16 8.8E-21 119.9 7.0 85 11-95 1-114 (397)
189 1azs_C GS-alpha; complex (lyas 99.6 6.8E-16 2.3E-20 117.3 9.2 86 41-130 203-299 (402)
190 2qnr_A Septin-2, protein NEDD5 99.6 5.6E-17 1.9E-21 119.5 2.7 146 8-157 16-199 (301)
191 2x2e_A Dynamin-1; nitration, h 99.6 4.5E-16 1.5E-20 117.0 7.0 121 9-132 30-214 (353)
192 1udx_A The GTP-binding protein 99.6 4E-15 1.4E-19 113.7 10.0 141 11-157 158-309 (416)
193 2dy1_A Elongation factor G; tr 99.6 3.9E-15 1.3E-19 120.0 8.4 115 8-128 7-139 (665)
194 1jal_A YCHF protein; nucleotid 99.6 1.9E-14 6.5E-19 108.0 10.2 83 10-94 2-108 (363)
195 3vqt_A RF-3, peptide chain rel 99.5 8.1E-14 2.8E-18 110.1 11.5 118 8-131 29-168 (548)
196 4a9a_A Ribosome-interacting GT 99.5 3E-13 1E-17 102.1 10.6 114 10-127 72-194 (376)
197 4fn5_A EF-G 1, elongation fact 99.5 4E-13 1.4E-17 109.1 12.0 127 1-131 4-153 (709)
198 2ohf_A Protein OLA1, GTP-bindi 99.4 6.3E-13 2.1E-17 100.8 6.3 91 8-98 20-132 (396)
199 3zvr_A Dynamin-1; hydrolase, D 99.4 6.1E-12 2.1E-16 102.2 12.2 147 9-159 50-263 (772)
200 2dby_A GTP-binding protein; GD 99.4 1.8E-12 6.3E-17 97.7 8.3 82 11-94 2-111 (368)
201 2wsm_A Hydrogenase expression/ 99.4 2.2E-13 7.4E-18 95.6 2.9 137 9-157 29-198 (221)
202 2hf9_A Probable hydrogenase ni 99.3 3.7E-15 1.3E-19 105.0 -8.0 38 9-46 37-74 (226)
203 3p32_A Probable GTPase RV1496/ 99.3 1.5E-12 5.3E-17 97.8 4.3 62 58-130 171-232 (355)
204 3j25_A Tetracycline resistance 99.3 3.2E-13 1.1E-17 108.5 0.6 118 10-131 2-135 (638)
205 2yv5_A YJEQ protein; hydrolase 99.1 4.5E-11 1.5E-15 88.0 5.8 86 69-157 66-153 (302)
206 2www_A Methylmalonic aciduria 99.1 6.7E-12 2.3E-16 94.1 -0.2 60 59-129 167-226 (349)
207 1yrb_A ATP(GTP)binding protein 99.1 4.7E-10 1.6E-14 80.4 9.4 70 59-131 109-187 (262)
208 2p67_A LAO/AO transport system 99.0 1.3E-10 4.6E-15 86.8 4.2 62 58-130 148-209 (341)
209 3l82_B F-box only protein 4; T 99.0 1.1E-10 3.8E-15 80.9 3.3 88 67-157 110-207 (227)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1.3E-09 4.4E-14 82.7 8.2 87 8-94 18-127 (392)
211 2qag_B Septin-6, protein NEDD5 98.9 6.2E-09 2.1E-13 79.7 10.0 139 11-154 43-217 (427)
212 3ec1_A YQEH GTPase; atnos1, at 98.8 4.9E-10 1.7E-14 84.6 0.7 114 10-132 162-291 (369)
213 3l2o_B F-box only protein 4; s 98.8 2.5E-09 8.7E-14 77.5 4.4 90 66-157 194-292 (312)
214 2qm8_A GTPase/ATPase; G protei 98.8 4.6E-09 1.6E-13 78.4 5.6 61 58-129 147-207 (337)
215 3h2y_A GTPase family protein; 98.8 5.3E-10 1.8E-14 84.4 0.1 115 10-131 160-289 (368)
216 3sop_A Neuronal-specific septi 98.8 6.1E-09 2.1E-13 75.4 5.1 25 10-34 2-26 (270)
217 1puj_A YLQF, conserved hypothe 98.7 2.3E-08 8E-13 72.8 5.2 59 8-70 118-176 (282)
218 3cnl_A YLQF, putative uncharac 98.6 1E-08 3.4E-13 74.0 2.5 57 11-71 100-156 (262)
219 2j37_W Signal recognition part 98.5 4.9E-08 1.7E-12 76.3 4.2 115 8-129 99-254 (504)
220 1bif_A 6-phosphofructo-2-kinas 98.3 4.7E-08 1.6E-12 75.9 -1.7 102 8-111 37-148 (469)
221 1f5n_A Interferon-induced guan 98.2 1.1E-06 3.6E-11 70.0 4.8 62 8-71 36-103 (592)
222 3h2y_A GTPase family protein; 98.2 9.9E-07 3.4E-11 66.5 4.4 83 68-157 55-144 (368)
223 1tq4_A IIGP1, interferon-induc 98.1 2.6E-05 8.9E-10 59.6 9.9 110 10-128 69-188 (413)
224 1puj_A YLQF, conserved hypothe 98.0 5.4E-06 1.8E-10 60.3 4.0 85 63-157 3-90 (282)
225 3ec1_A YQEH GTPase; atnos1, at 98.0 1.8E-06 6.2E-11 65.1 1.5 83 68-157 57-146 (369)
226 3szr_A Interferon-induced GTP- 97.9 2E-05 6.7E-10 63.2 7.1 23 12-34 47-69 (608)
227 2v3c_C SRP54, signal recogniti 97.9 1.5E-05 5.2E-10 61.3 5.1 112 10-128 99-251 (432)
228 3dm5_A SRP54, signal recogniti 97.8 4.2E-05 1.4E-09 58.9 7.1 136 9-154 99-274 (443)
229 3q5d_A Atlastin-1; G protein, 97.5 0.00011 3.6E-09 56.7 5.0 26 8-33 65-90 (447)
230 1j8m_F SRP54, signal recogniti 97.5 0.00022 7.4E-09 52.2 5.8 85 58-153 180-273 (297)
231 1ye8_A Protein THEP1, hypothet 97.4 0.00012 4.2E-09 49.5 3.5 22 12-33 2-23 (178)
232 1kgd_A CASK, peripheral plasma 97.3 0.00017 5.9E-09 48.6 3.3 23 11-33 6-28 (180)
233 1lvg_A Guanylate kinase, GMP k 97.2 0.00021 7.1E-09 49.0 3.3 22 11-32 5-26 (198)
234 1t9h_A YLOQ, probable GTPase E 97.2 0.00024 8.3E-09 52.2 3.2 83 71-156 75-160 (307)
235 3a00_A Guanylate kinase, GMP k 97.1 0.00029 9.9E-09 47.7 3.2 21 13-33 4-24 (186)
236 1znw_A Guanylate kinase, GMP k 97.1 0.00031 1.1E-08 48.4 3.2 24 11-34 21-44 (207)
237 3tr0_A Guanylate kinase, GMP k 97.1 0.00032 1.1E-08 47.9 3.2 22 12-33 9-30 (205)
238 1s96_A Guanylate kinase, GMP k 97.1 0.00034 1.2E-08 48.9 3.2 24 11-34 17-40 (219)
239 1zp6_A Hypothetical protein AT 97.1 0.00046 1.6E-08 46.6 3.7 24 10-33 9-32 (191)
240 1z6g_A Guanylate kinase; struc 97.0 0.00038 1.3E-08 48.4 3.2 24 11-34 24-47 (218)
241 3ney_A 55 kDa erythrocyte memb 97.0 0.00041 1.4E-08 47.7 3.3 24 10-33 19-42 (197)
242 3c8u_A Fructokinase; YP_612366 97.0 0.00048 1.7E-08 47.4 3.6 25 8-32 20-44 (208)
243 4gp7_A Metallophosphoesterase; 97.0 0.00031 1E-08 47.0 2.5 20 12-31 11-30 (171)
244 1knq_A Gluconate kinase; ALFA/ 97.0 0.0007 2.4E-08 45.1 4.1 24 9-32 7-30 (175)
245 1htw_A HI0065; nucleotide-bind 97.0 0.00049 1.7E-08 45.6 3.2 24 11-34 34-57 (158)
246 1ex7_A Guanylate kinase; subst 97.0 0.00052 1.8E-08 46.8 3.3 21 13-33 4-24 (186)
247 3tau_A Guanylate kinase, GMP k 97.0 0.00052 1.8E-08 47.3 3.2 24 11-34 9-32 (208)
248 3tif_A Uncharacterized ABC tra 96.9 0.00053 1.8E-08 48.4 2.9 22 12-33 33-54 (235)
249 2rcn_A Probable GTPase ENGC; Y 96.9 0.00062 2.1E-08 51.0 3.4 24 12-35 217-240 (358)
250 3asz_A Uridine kinase; cytidin 96.9 0.00076 2.6E-08 46.3 3.5 25 8-32 4-28 (211)
251 2qor_A Guanylate kinase; phosp 96.9 0.00072 2.5E-08 46.4 3.2 24 10-33 12-35 (204)
252 2onk_A Molybdate/tungstate ABC 96.8 0.00074 2.5E-08 47.8 3.3 23 12-34 26-48 (240)
253 1kag_A SKI, shikimate kinase I 96.8 0.00079 2.7E-08 44.7 3.2 23 11-33 5-27 (173)
254 2bdt_A BH3686; alpha-beta prot 96.8 0.00077 2.6E-08 45.5 3.2 21 12-32 4-24 (189)
255 2j41_A Guanylate kinase; GMP, 96.8 0.00076 2.6E-08 46.0 3.2 24 11-34 7-30 (207)
256 1ly1_A Polynucleotide kinase; 96.8 0.001 3.5E-08 44.2 3.8 22 11-32 3-24 (181)
257 2pcj_A ABC transporter, lipopr 96.8 0.00062 2.1E-08 47.6 2.7 22 12-33 32-53 (224)
258 2i3b_A HCR-ntpase, human cance 96.8 0.00079 2.7E-08 45.9 3.0 22 12-33 3-24 (189)
259 3kb2_A SPBC2 prophage-derived 96.8 0.001 3.4E-08 44.0 3.4 22 12-33 3-24 (173)
260 4eun_A Thermoresistant glucoki 96.8 0.00091 3.1E-08 45.7 3.2 23 10-32 29-51 (200)
261 1b0u_A Histidine permease; ABC 96.8 0.00077 2.6E-08 48.3 2.9 22 12-33 34-55 (262)
262 2bbw_A Adenylate kinase 4, AK4 96.8 0.00097 3.3E-08 47.1 3.4 22 10-31 27-48 (246)
263 1sgw_A Putative ABC transporte 96.8 0.00082 2.8E-08 46.8 2.9 22 12-33 37-58 (214)
264 3gfo_A Cobalt import ATP-bindi 96.8 0.0008 2.7E-08 48.6 2.9 22 12-33 36-57 (275)
265 3lw7_A Adenylate kinase relate 96.7 0.00095 3.2E-08 44.0 3.0 19 12-30 3-21 (179)
266 2cbz_A Multidrug resistance-as 96.7 0.00093 3.2E-08 47.2 3.1 22 12-33 33-54 (237)
267 1g6h_A High-affinity branched- 96.7 0.00084 2.9E-08 48.0 2.9 23 12-34 35-57 (257)
268 3cnl_A YLQF, putative uncharac 96.7 0.00031 1.1E-08 50.4 0.6 77 66-155 4-83 (262)
269 1np6_A Molybdopterin-guanine d 96.7 0.0011 3.7E-08 44.6 3.2 24 10-33 6-29 (174)
270 1mv5_A LMRA, multidrug resista 96.7 0.001 3.4E-08 47.2 3.2 22 12-33 30-51 (243)
271 4g1u_C Hemin import ATP-bindin 96.7 0.00086 2.9E-08 48.2 2.8 23 12-34 39-61 (266)
272 2eyu_A Twitching motility prot 96.7 0.001 3.6E-08 47.6 3.3 23 11-33 26-48 (261)
273 2pze_A Cystic fibrosis transme 96.7 0.00093 3.2E-08 46.9 2.9 22 12-33 36-57 (229)
274 2ff7_A Alpha-hemolysin translo 96.7 0.001 3.4E-08 47.3 3.1 22 12-33 37-58 (247)
275 2d2e_A SUFC protein; ABC-ATPas 96.7 0.0011 3.6E-08 47.3 3.2 22 12-33 31-52 (250)
276 1u0l_A Probable GTPase ENGC; p 96.7 0.0011 3.8E-08 48.4 3.4 25 11-35 170-194 (301)
277 2olj_A Amino acid ABC transpor 96.7 0.00093 3.2E-08 48.0 2.9 22 12-33 52-73 (263)
278 2zu0_C Probable ATP-dependent 96.7 0.0011 3.8E-08 47.6 3.3 22 12-33 48-69 (267)
279 3ec2_A DNA replication protein 96.7 0.0011 3.6E-08 44.5 3.0 24 10-33 38-61 (180)
280 1ji0_A ABC transporter; ATP bi 96.7 0.00097 3.3E-08 47.1 2.9 22 12-33 34-55 (240)
281 2cdn_A Adenylate kinase; phosp 96.7 0.0016 5.6E-08 44.3 3.9 26 7-32 17-42 (201)
282 3b85_A Phosphate starvation-in 96.7 0.00082 2.8E-08 46.5 2.4 22 12-33 24-45 (208)
283 2yv5_A YJEQ protein; hydrolase 96.7 0.0011 3.7E-08 48.6 3.2 23 11-34 166-188 (302)
284 1vpl_A ABC transporter, ATP-bi 96.7 0.001 3.4E-08 47.6 2.9 23 12-34 43-65 (256)
285 2v9p_A Replication protein E1; 96.7 0.0012 4.1E-08 48.4 3.4 24 10-33 126-149 (305)
286 1ukz_A Uridylate kinase; trans 96.7 0.002 6.9E-08 43.9 4.4 25 8-32 13-37 (203)
287 3t61_A Gluconokinase; PSI-biol 96.7 0.0012 4.1E-08 45.0 3.2 23 10-32 18-40 (202)
288 3be4_A Adenylate kinase; malar 96.7 0.0015 5.1E-08 45.2 3.7 26 7-32 2-27 (217)
289 2qi9_C Vitamin B12 import ATP- 96.7 0.001 3.5E-08 47.3 2.9 22 12-33 28-49 (249)
290 3cwq_A Para family chromosome 96.7 0.017 5.9E-07 39.6 9.1 66 58-128 67-133 (209)
291 2ehv_A Hypothetical protein PH 96.6 0.0012 4.2E-08 46.3 3.2 22 10-31 30-51 (251)
292 2ghi_A Transport protein; mult 96.6 0.0012 4.1E-08 47.3 3.1 22 12-33 48-69 (260)
293 2jaq_A Deoxyguanosine kinase; 96.6 0.0015 5E-08 44.4 3.5 21 12-32 2-22 (205)
294 3umf_A Adenylate kinase; rossm 96.6 0.0019 6.6E-08 45.0 4.0 23 10-32 28-51 (217)
295 2ixe_A Antigen peptide transpo 96.6 0.0011 3.8E-08 47.7 2.9 22 12-33 47-68 (271)
296 2ihy_A ABC transporter, ATP-bi 96.6 0.0013 4.3E-08 47.7 3.2 23 12-34 49-71 (279)
297 3vaa_A Shikimate kinase, SK; s 96.6 0.0017 5.8E-08 44.3 3.6 23 10-32 25-47 (199)
298 4a74_A DNA repair and recombin 96.6 0.0012 4.2E-08 45.6 3.0 24 10-33 25-48 (231)
299 1lw7_A Transcriptional regulat 96.6 0.0011 3.9E-08 49.6 2.9 24 10-33 170-193 (365)
300 1qhx_A CPT, protein (chloramph 96.6 0.0015 5.2E-08 43.5 3.3 23 11-33 4-26 (178)
301 3uie_A Adenylyl-sulfate kinase 96.6 0.0014 4.9E-08 44.7 3.2 24 10-33 25-48 (200)
302 1aky_A Adenylate kinase; ATP:A 96.6 0.0017 5.9E-08 44.9 3.6 24 9-32 3-26 (220)
303 2nq2_C Hypothetical ABC transp 96.6 0.0012 4.1E-08 47.1 2.9 23 12-34 33-55 (253)
304 1t9h_A YLOQ, probable GTPase E 96.6 0.00032 1.1E-08 51.5 -0.1 24 11-34 174-197 (307)
305 1zcb_A G alpha I/13; GTP-bindi 96.6 0.0016 5.3E-08 49.0 3.6 24 8-31 31-54 (362)
306 2rhm_A Putative kinase; P-loop 96.6 0.0017 6E-08 43.7 3.6 23 10-32 5-27 (193)
307 1nks_A Adenylate kinase; therm 96.6 0.0015 5.2E-08 43.8 3.2 21 12-32 3-23 (194)
308 2yz2_A Putative ABC transporte 96.6 0.0012 4.2E-08 47.3 2.9 22 12-33 35-56 (266)
309 1cke_A CK, MSSA, protein (cyti 96.6 0.0018 6.2E-08 44.8 3.7 22 11-32 6-27 (227)
310 2if2_A Dephospho-COA kinase; a 96.6 0.0016 5.3E-08 44.5 3.3 22 11-32 2-23 (204)
311 3fb4_A Adenylate kinase; psych 96.6 0.0017 5.7E-08 44.7 3.4 21 12-32 2-22 (216)
312 2qt1_A Nicotinamide riboside k 96.6 0.0022 7.5E-08 43.9 4.0 26 8-33 19-44 (207)
313 2rcn_A Probable GTPase ENGC; Y 96.5 0.0047 1.6E-07 46.3 5.9 74 80-157 128-203 (358)
314 3dl0_A Adenylate kinase; phosp 96.5 0.0018 6.2E-08 44.6 3.4 21 12-32 2-22 (216)
315 3lnc_A Guanylate kinase, GMP k 96.5 0.0009 3.1E-08 46.8 1.9 23 11-33 28-51 (231)
316 1zd8_A GTP:AMP phosphotransfer 96.5 0.0017 5.8E-08 45.2 3.3 24 9-32 6-29 (227)
317 2pjz_A Hypothetical protein ST 96.5 0.0016 5.4E-08 46.8 3.2 23 12-34 32-54 (263)
318 2yvu_A Probable adenylyl-sulfa 96.5 0.0028 9.5E-08 42.6 4.2 25 8-32 11-35 (186)
319 3tlx_A Adenylate kinase 2; str 96.5 0.0022 7.5E-08 45.3 3.8 24 9-32 28-51 (243)
320 3trf_A Shikimate kinase, SK; a 96.5 0.0021 7.2E-08 43.1 3.5 23 10-32 5-27 (185)
321 1kht_A Adenylate kinase; phosp 96.5 0.0021 7.3E-08 43.1 3.6 22 11-32 4-25 (192)
322 1y63_A LMAJ004144AAA protein; 96.5 0.0025 8.6E-08 42.9 3.9 25 9-33 9-33 (184)
323 3aez_A Pantothenate kinase; tr 96.5 0.0024 8.1E-08 47.0 4.0 26 7-32 87-112 (312)
324 3cm0_A Adenylate kinase; ATP-b 96.5 0.0023 7.7E-08 42.9 3.6 23 10-32 4-26 (186)
325 2plr_A DTMP kinase, probable t 96.5 0.0025 8.4E-08 43.5 3.8 23 10-32 4-26 (213)
326 1tev_A UMP-CMP kinase; ploop, 96.5 0.0025 8.5E-08 42.8 3.7 23 10-32 3-25 (196)
327 1jjv_A Dephospho-COA kinase; P 96.4 0.0025 8.4E-08 43.6 3.6 22 11-32 3-24 (206)
328 1zak_A Adenylate kinase; ATP:A 96.4 0.0018 6.2E-08 44.9 3.0 24 9-32 4-27 (222)
329 3fvq_A Fe(3+) IONS import ATP- 96.4 0.0017 5.8E-08 48.7 3.0 23 12-34 32-54 (359)
330 2wwf_A Thymidilate kinase, put 96.4 0.0031 1.1E-07 43.1 4.1 24 9-32 9-32 (212)
331 2jeo_A Uridine-cytidine kinase 96.4 0.0026 8.8E-08 44.9 3.8 24 9-32 24-47 (245)
332 3jvv_A Twitching mobility prot 96.4 0.0019 6.6E-08 48.4 3.2 22 12-33 125-146 (356)
333 2f1r_A Molybdopterin-guanine d 96.4 0.00089 3E-08 44.9 1.3 22 12-33 4-25 (171)
334 1z47_A CYSA, putative ABC-tran 96.4 0.002 6.9E-08 48.2 3.2 23 12-34 43-65 (355)
335 1odf_A YGR205W, hypothetical 3 96.4 0.0033 1.1E-07 45.7 4.2 26 7-32 28-53 (290)
336 2x8a_A Nuclear valosin-contain 96.4 0.0022 7.5E-08 46.2 3.2 21 13-33 47-67 (274)
337 1ak2_A Adenylate kinase isoenz 96.4 0.0028 9.7E-08 44.3 3.7 24 9-32 15-38 (233)
338 2bbs_A Cystic fibrosis transme 96.4 0.0019 6.6E-08 47.0 2.9 22 12-33 66-87 (290)
339 1gvn_B Zeta; postsegregational 96.4 0.0028 9.6E-08 46.0 3.7 24 9-32 32-55 (287)
340 1rz3_A Hypothetical protein rb 96.4 0.0032 1.1E-07 43.0 3.9 25 8-32 20-44 (201)
341 2it1_A 362AA long hypothetical 96.4 0.0022 7.7E-08 48.1 3.3 23 12-34 31-53 (362)
342 1qf9_A UMP/CMP kinase, protein 96.4 0.0032 1.1E-07 42.2 3.8 23 10-32 6-28 (194)
343 3tui_C Methionine import ATP-b 96.4 0.0023 7.7E-08 48.1 3.3 23 12-34 56-78 (366)
344 2yyz_A Sugar ABC transporter, 96.4 0.0022 7.5E-08 48.1 3.2 23 12-34 31-53 (359)
345 1jbk_A CLPB protein; beta barr 96.4 0.0028 9.6E-08 42.1 3.5 24 10-33 43-66 (195)
346 1xjc_A MOBB protein homolog; s 96.4 0.0031 1.1E-07 42.2 3.6 23 10-32 4-26 (169)
347 1via_A Shikimate kinase; struc 96.3 0.0024 8.1E-08 42.5 3.0 21 12-32 6-26 (175)
348 1e4v_A Adenylate kinase; trans 96.3 0.0025 8.5E-08 43.9 3.2 21 12-32 2-22 (214)
349 3rlf_A Maltose/maltodextrin im 96.3 0.0023 8E-08 48.3 3.3 23 12-34 31-53 (381)
350 1ixz_A ATP-dependent metallopr 96.3 0.0025 8.5E-08 45.1 3.3 22 12-33 51-72 (254)
351 1g29_1 MALK, maltose transport 96.3 0.0024 8.1E-08 48.1 3.2 23 12-34 31-53 (372)
352 2c95_A Adenylate kinase 1; tra 96.3 0.003 1E-07 42.6 3.5 23 10-32 9-31 (196)
353 1v43_A Sugar-binding transport 96.3 0.0025 8.4E-08 48.1 3.3 23 12-34 39-61 (372)
354 3iij_A Coilin-interacting nucl 96.3 0.003 1E-07 42.2 3.4 23 10-32 11-33 (180)
355 3tqc_A Pantothenate kinase; bi 96.3 0.0037 1.3E-07 46.2 4.1 25 8-32 90-114 (321)
356 2v54_A DTMP kinase, thymidylat 96.3 0.0036 1.2E-07 42.5 3.8 24 10-33 4-27 (204)
357 2kjq_A DNAA-related protein; s 96.3 0.0017 5.9E-08 42.4 2.1 23 11-33 37-59 (149)
358 3nh6_A ATP-binding cassette SU 96.3 0.0014 4.9E-08 48.0 1.8 23 11-33 81-103 (306)
359 1sq5_A Pantothenate kinase; P- 96.3 0.0035 1.2E-07 45.9 3.9 25 8-32 78-102 (308)
360 2pt5_A Shikimate kinase, SK; a 96.3 0.0034 1.2E-07 41.3 3.5 21 12-32 2-22 (168)
361 3b9q_A Chloroplast SRP recepto 96.3 0.0028 9.7E-08 46.4 3.2 23 10-32 100-122 (302)
362 3sr0_A Adenylate kinase; phosp 96.2 0.0035 1.2E-07 43.3 3.4 21 12-32 2-22 (206)
363 2ewv_A Twitching motility prot 96.2 0.003 1E-07 47.5 3.4 23 11-33 137-159 (372)
364 2gza_A Type IV secretion syste 96.2 0.0025 8.6E-08 47.8 2.9 23 11-33 176-198 (361)
365 1uf9_A TT1252 protein; P-loop, 96.2 0.0037 1.3E-07 42.3 3.6 25 9-33 7-31 (203)
366 1nn5_A Similar to deoxythymidy 96.2 0.0035 1.2E-07 42.9 3.4 23 10-32 9-31 (215)
367 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0031 1.1E-07 43.5 3.2 22 11-32 24-45 (235)
368 2bwj_A Adenylate kinase 5; pho 96.2 0.003 1E-07 42.7 3.1 24 9-32 11-34 (199)
369 1rj9_A FTSY, signal recognitio 96.2 0.0048 1.7E-07 45.2 4.3 23 10-32 102-124 (304)
370 4ido_A Atlastin-1; GTPase, GTP 96.2 0.035 1.2E-06 42.9 9.1 63 8-70 65-151 (457)
371 2ze6_A Isopentenyl transferase 96.2 0.0033 1.1E-07 44.7 3.3 21 12-32 3-23 (253)
372 2p5t_B PEZT; postsegregational 96.2 0.0035 1.2E-07 44.5 3.4 25 8-32 30-54 (253)
373 1p9r_A General secretion pathw 96.2 0.0031 1.1E-07 48.2 3.2 22 12-33 169-190 (418)
374 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0044 1.5E-07 44.2 3.8 23 10-32 4-26 (260)
375 2z0h_A DTMP kinase, thymidylat 96.2 0.0036 1.2E-07 42.2 3.2 22 12-33 2-23 (197)
376 2pt7_A CAG-ALFA; ATPase, prote 96.2 0.0024 8.3E-08 47.3 2.5 24 11-34 172-195 (330)
377 3foz_A TRNA delta(2)-isopenten 96.2 0.0046 1.6E-07 45.4 3.9 33 1-33 1-33 (316)
378 1iy2_A ATP-dependent metallopr 96.1 0.0036 1.2E-07 44.9 3.3 22 12-33 75-96 (278)
379 2pez_A Bifunctional 3'-phospho 96.1 0.005 1.7E-07 41.1 3.8 23 10-32 5-27 (179)
380 3co5_A Putative two-component 96.1 0.0084 2.9E-07 38.6 4.8 24 10-33 27-50 (143)
381 3d31_A Sulfate/molybdate ABC t 96.1 0.0021 7.1E-08 48.0 2.0 23 12-34 28-50 (348)
382 3e70_C DPA, signal recognition 96.1 0.005 1.7E-07 45.6 4.0 24 9-32 128-151 (328)
383 1gtv_A TMK, thymidylate kinase 96.1 0.0012 4.1E-08 45.3 0.7 21 12-32 2-22 (214)
384 2xb4_A Adenylate kinase; ATP-b 96.1 0.0042 1.4E-07 43.2 3.5 21 12-32 2-22 (223)
385 3gd7_A Fusion complex of cysti 96.1 0.0032 1.1E-07 47.7 3.0 22 12-33 49-70 (390)
386 1uj2_A Uridine-cytidine kinase 96.1 0.0048 1.6E-07 43.7 3.7 25 8-32 20-44 (252)
387 3kta_A Chromosome segregation 96.1 0.0037 1.3E-07 41.8 3.0 21 12-32 28-48 (182)
388 2vp4_A Deoxynucleoside kinase; 96.1 0.0024 8.2E-08 44.6 2.1 25 9-33 19-43 (230)
389 1in4_A RUVB, holliday junction 96.1 0.0037 1.3E-07 46.2 3.2 23 11-33 52-74 (334)
390 2pbr_A DTMP kinase, thymidylat 96.1 0.0045 1.5E-07 41.6 3.4 21 12-32 2-22 (195)
391 2vli_A Antibiotic resistance p 96.1 0.0027 9.2E-08 42.4 2.1 23 10-32 5-27 (183)
392 2f6r_A COA synthase, bifunctio 96.0 0.0054 1.8E-07 44.3 3.8 25 8-32 73-97 (281)
393 4e22_A Cytidylate kinase; P-lo 96.0 0.0051 1.8E-07 43.6 3.6 22 10-31 27-48 (252)
394 2oap_1 GSPE-2, type II secreti 96.0 0.0035 1.2E-07 49.2 2.9 24 11-34 261-284 (511)
395 2obl_A ESCN; ATPase, hydrolase 96.0 0.0042 1.4E-07 46.3 3.3 24 11-34 72-95 (347)
396 1vht_A Dephospho-COA kinase; s 96.0 0.0059 2E-07 42.1 3.8 23 10-32 4-26 (218)
397 1cr0_A DNA primase/helicase; R 96.0 0.0039 1.3E-07 45.1 3.0 22 12-33 37-58 (296)
398 1e6c_A Shikimate kinase; phosp 96.0 0.005 1.7E-07 40.6 3.3 21 12-32 4-24 (173)
399 2p65_A Hypothetical protein PF 96.0 0.0036 1.2E-07 41.5 2.6 24 10-33 43-66 (187)
400 1nij_A Hypothetical protein YJ 96.0 0.0032 1.1E-07 46.3 2.4 23 12-34 6-28 (318)
401 1lv7_A FTSH; alpha/beta domain 96.0 0.0058 2E-07 43.2 3.7 24 10-33 45-68 (257)
402 3bos_A Putative DNA replicatio 96.0 0.0054 1.8E-07 42.5 3.4 24 10-33 52-75 (242)
403 2og2_A Putative signal recogni 96.0 0.0047 1.6E-07 46.3 3.2 24 9-32 156-179 (359)
404 2npi_A Protein CLP1; CLP1-PCF1 96.0 0.0037 1.3E-07 48.4 2.8 23 11-33 139-161 (460)
405 2yhs_A FTSY, cell division pro 95.9 0.0048 1.6E-07 48.2 3.3 23 10-32 293-315 (503)
406 1oxx_K GLCV, glucose, ABC tran 95.9 0.0021 7.2E-08 48.1 1.2 23 12-34 33-55 (353)
407 2cvh_A DNA repair and recombin 95.9 0.0052 1.8E-07 42.1 3.2 24 9-32 19-42 (220)
408 1n0w_A DNA repair protein RAD5 95.9 0.0053 1.8E-07 42.8 3.3 25 9-33 23-47 (243)
409 2iyv_A Shikimate kinase, SK; t 95.9 0.0056 1.9E-07 40.9 3.2 21 12-32 4-24 (184)
410 2w58_A DNAI, primosome compone 95.9 0.0063 2.2E-07 41.3 3.4 23 11-33 55-77 (202)
411 1zuh_A Shikimate kinase; alpha 95.8 0.0066 2.3E-07 40.0 3.3 22 11-32 8-29 (168)
412 4eaq_A DTMP kinase, thymidylat 95.8 0.0087 3E-07 41.9 4.1 25 9-33 25-49 (229)
413 1azs_C GS-alpha; complex (lyas 95.8 0.0066 2.3E-07 46.2 3.5 24 8-31 38-61 (402)
414 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0072 2.5E-07 39.4 3.2 19 13-31 26-44 (149)
415 3nwj_A ATSK2; P loop, shikimat 95.8 0.0059 2E-07 43.4 3.0 23 10-32 48-70 (250)
416 3r20_A Cytidylate kinase; stru 95.8 0.0072 2.5E-07 42.5 3.4 24 9-32 8-31 (233)
417 1njg_A DNA polymerase III subu 95.8 0.0068 2.3E-07 41.7 3.2 21 12-32 47-67 (250)
418 1m7g_A Adenylylsulfate kinase; 95.7 0.0091 3.1E-07 41.0 3.8 23 10-32 25-47 (211)
419 2chg_A Replication factor C sm 95.7 0.0072 2.5E-07 41.1 3.2 22 12-33 40-61 (226)
420 1ltq_A Polynucleotide kinase; 95.7 0.0088 3E-07 43.3 3.8 22 11-32 3-24 (301)
421 3syl_A Protein CBBX; photosynt 95.7 0.0091 3.1E-07 43.2 3.8 25 8-32 65-89 (309)
422 2dpy_A FLII, flagellum-specifi 95.7 0.0068 2.3E-07 46.6 3.3 24 11-34 158-181 (438)
423 3t15_A Ribulose bisphosphate c 95.7 0.009 3.1E-07 43.3 3.8 26 8-33 34-59 (293)
424 1yqt_A RNAse L inhibitor; ATP- 95.7 0.0077 2.6E-07 47.6 3.5 24 11-34 48-71 (538)
425 3euj_A Chromosome partition pr 95.7 0.0073 2.5E-07 47.0 3.3 22 11-32 30-51 (483)
426 3h4m_A Proteasome-activating n 95.6 0.01 3.4E-07 42.5 3.8 25 9-33 50-74 (285)
427 3n70_A Transport activator; si 95.6 0.0092 3.1E-07 38.5 3.3 25 10-34 24-48 (145)
428 4fcw_A Chaperone protein CLPB; 95.6 0.012 4.1E-07 42.6 4.2 25 9-33 46-70 (311)
429 3d3q_A TRNA delta(2)-isopenten 95.6 0.01 3.5E-07 44.1 3.7 22 11-32 8-29 (340)
430 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.011 3.7E-07 41.7 3.7 25 9-33 38-62 (262)
431 3b9p_A CG5977-PA, isoform A; A 95.5 0.01 3.4E-07 42.8 3.5 25 9-33 53-77 (297)
432 1svm_A Large T antigen; AAA+ f 95.5 0.0085 2.9E-07 45.2 3.2 23 10-32 169-191 (377)
433 1nlf_A Regulatory protein REPA 95.5 0.0082 2.8E-07 43.1 3.0 22 11-32 31-52 (279)
434 1q3t_A Cytidylate kinase; nucl 95.5 0.011 3.9E-07 41.2 3.6 26 7-32 13-38 (236)
435 1d2n_A N-ethylmaleimide-sensit 95.5 0.012 4.2E-07 41.9 3.9 26 8-33 62-87 (272)
436 3j16_B RLI1P; ribosome recycli 95.5 0.0089 3.1E-07 47.9 3.3 23 12-34 105-127 (608)
437 3b60_A Lipid A export ATP-bind 95.5 0.008 2.7E-07 47.9 2.9 23 11-33 370-392 (582)
438 3b5x_A Lipid A export ATP-bind 95.4 0.0092 3.2E-07 47.5 3.3 23 11-33 370-392 (582)
439 3ozx_A RNAse L inhibitor; ATP 95.4 0.0083 2.8E-07 47.4 2.9 24 11-34 26-49 (538)
440 3qf7_A RAD50; ABC-ATPase, ATPa 95.4 0.01 3.4E-07 44.6 3.2 19 13-31 26-44 (365)
441 2qby_A CDC6 homolog 1, cell di 95.4 0.0092 3.2E-07 44.3 3.0 24 10-33 45-68 (386)
442 1tue_A Replication protein E1; 95.4 0.0092 3.1E-07 41.3 2.7 24 10-33 58-81 (212)
443 1l8q_A Chromosomal replication 95.4 0.01 3.5E-07 43.5 3.2 23 11-33 38-60 (324)
444 3cf0_A Transitional endoplasmi 95.4 0.013 4.3E-07 42.7 3.5 24 10-33 49-72 (301)
445 1sxj_E Activator 1 40 kDa subu 95.3 0.011 3.9E-07 43.6 3.3 21 13-33 39-59 (354)
446 1fnn_A CDC6P, cell division co 95.3 0.012 4E-07 43.9 3.3 22 12-33 46-67 (389)
447 3eie_A Vacuolar protein sortin 95.2 0.018 6.1E-07 42.2 4.1 25 9-33 50-74 (322)
448 3bk7_A ABC transporter ATP-bin 95.2 0.011 3.9E-07 47.3 3.2 24 11-34 118-141 (607)
449 1ofh_A ATP-dependent HSL prote 95.2 0.013 4.5E-07 42.2 3.3 24 10-33 50-73 (310)
450 1yqt_A RNAse L inhibitor; ATP- 95.2 0.013 4.5E-07 46.2 3.5 24 12-35 314-337 (538)
451 3bk7_A ABC transporter ATP-bin 95.2 0.012 4.1E-07 47.1 3.3 24 12-35 384-407 (607)
452 2dr3_A UPF0273 protein PH0284; 95.2 0.012 4.2E-07 40.9 3.0 23 10-32 23-45 (247)
453 2px0_A Flagellar biosynthesis 95.2 0.012 4.1E-07 42.8 3.0 23 10-32 105-127 (296)
454 3zvl_A Bifunctional polynucleo 95.2 0.02 6.7E-07 43.7 4.2 24 9-32 257-280 (416)
455 1xwi_A SKD1 protein; VPS4B, AA 95.2 0.018 6.2E-07 42.3 3.9 25 9-33 44-68 (322)
456 4b4t_M 26S protease regulatory 95.2 0.018 6.1E-07 44.3 4.0 26 8-33 213-238 (434)
457 3ozx_A RNAse L inhibitor; ATP 95.2 0.011 3.9E-07 46.6 2.9 24 12-35 296-319 (538)
458 2yl4_A ATP-binding cassette SU 95.1 0.0085 2.9E-07 47.8 2.2 22 12-33 372-393 (595)
459 2grj_A Dephospho-COA kinase; T 95.1 0.018 6.3E-07 39.2 3.6 25 9-33 11-35 (192)
460 1sxj_C Activator 1 40 kDa subu 95.1 0.014 4.8E-07 43.1 3.2 21 13-33 49-69 (340)
461 4b4t_K 26S protease regulatory 95.1 0.019 6.6E-07 44.0 4.0 26 8-33 204-229 (428)
462 3qf4_B Uncharacterized ABC tra 95.1 0.0095 3.2E-07 47.6 2.3 23 11-33 382-404 (598)
463 3ake_A Cytidylate kinase; CMP 95.0 0.019 6.4E-07 38.9 3.4 21 12-32 4-24 (208)
464 2qmh_A HPR kinase/phosphorylas 95.0 0.017 5.8E-07 39.7 3.1 24 11-34 35-58 (205)
465 2qen_A Walker-type ATPase; unk 95.0 0.016 5.5E-07 42.4 3.3 22 12-33 33-54 (350)
466 4b4t_L 26S protease subunit RP 95.0 0.021 7.3E-07 43.9 4.0 26 8-33 213-238 (437)
467 3j16_B RLI1P; ribosome recycli 95.0 0.015 5.2E-07 46.6 3.3 23 13-35 381-403 (608)
468 1vma_A Cell division protein F 95.0 0.017 5.8E-07 42.3 3.3 23 10-32 104-126 (306)
469 2ga8_A Hypothetical 39.9 kDa p 95.0 0.024 8.1E-07 42.4 4.0 24 9-32 23-46 (359)
470 1p5z_B DCK, deoxycytidine kina 95.0 0.011 3.6E-07 42.1 2.1 25 9-33 23-47 (263)
471 3qks_A DNA double-strand break 95.0 0.018 6.3E-07 39.4 3.2 19 13-31 26-44 (203)
472 4a82_A Cystic fibrosis transme 94.9 0.0081 2.8E-07 47.8 1.6 23 11-33 368-390 (578)
473 2ocp_A DGK, deoxyguanosine kin 94.9 0.021 7.2E-07 40.0 3.6 23 11-33 3-25 (241)
474 2v1u_A Cell division control p 94.9 0.014 4.9E-07 43.3 2.8 24 10-33 44-67 (387)
475 3crm_A TRNA delta(2)-isopenten 94.9 0.023 8E-07 41.9 3.8 22 11-32 6-27 (323)
476 1sxj_D Activator 1 41 kDa subu 94.9 0.017 6E-07 42.4 3.2 21 13-33 61-81 (353)
477 1pzn_A RAD51, DNA repair and r 94.9 0.016 5.6E-07 43.1 3.0 26 9-34 130-155 (349)
478 3qf4_A ABC transporter, ATP-bi 94.9 0.011 3.6E-07 47.2 2.0 23 11-33 370-392 (587)
479 2fna_A Conserved hypothetical 94.8 0.017 5.9E-07 42.3 3.0 22 12-33 32-53 (357)
480 2iw3_A Elongation factor 3A; a 94.8 0.022 7.4E-07 48.1 3.8 24 12-35 463-486 (986)
481 2qgz_A Helicase loader, putati 94.8 0.022 7.6E-07 41.6 3.4 24 10-33 152-175 (308)
482 4dzz_A Plasmid partitioning pr 94.8 0.085 2.9E-06 35.5 6.2 65 59-127 76-142 (206)
483 2bjv_A PSP operon transcriptio 94.7 0.024 8.1E-07 40.2 3.4 25 10-34 29-53 (265)
484 3pxg_A Negative regulator of g 94.7 0.02 6.9E-07 44.3 3.2 24 10-33 201-224 (468)
485 2r62_A Cell division protease 94.7 0.009 3.1E-07 42.4 1.1 23 11-33 45-67 (268)
486 3pfi_A Holliday junction ATP-d 94.7 0.024 8.2E-07 41.6 3.4 24 10-33 55-78 (338)
487 1c9k_A COBU, adenosylcobinamid 94.7 0.023 7.9E-07 38.3 3.0 21 13-33 2-22 (180)
488 1tf7_A KAIC; homohexamer, hexa 94.7 0.019 6.4E-07 45.1 2.9 19 13-31 42-60 (525)
489 2qby_B CDC6 homolog 3, cell di 94.7 0.02 7E-07 42.5 3.0 23 11-33 46-68 (384)
490 3uk6_A RUVB-like 2; hexameric 94.6 0.028 9.5E-07 41.7 3.8 24 10-33 70-93 (368)
491 4b4t_J 26S protease regulatory 94.6 0.025 8.5E-07 43.0 3.4 26 8-33 180-205 (405)
492 3uc9_A Increased recombination 94.6 0.12 4.2E-06 36.2 6.7 28 7-34 26-53 (233)
493 3m6a_A ATP-dependent protease 94.6 0.022 7.4E-07 45.0 3.2 23 11-33 109-131 (543)
494 4edh_A DTMP kinase, thymidylat 94.6 0.026 8.8E-07 39.1 3.2 23 10-32 6-28 (213)
495 3u61_B DNA polymerase accessor 94.6 0.32 1.1E-05 35.3 9.3 21 13-33 51-71 (324)
496 3d8b_A Fidgetin-like protein 1 94.6 0.028 9.6E-07 41.9 3.6 25 9-33 116-140 (357)
497 1um8_A ATP-dependent CLP prote 94.6 0.025 8.6E-07 42.3 3.4 24 10-33 72-95 (376)
498 3tqf_A HPR(Ser) kinase; transf 94.6 0.03 1E-06 37.6 3.3 24 11-34 17-40 (181)
499 3ld9_A DTMP kinase, thymidylat 94.6 0.034 1.2E-06 38.8 3.8 25 8-32 19-43 (223)
500 2qp9_X Vacuolar protein sortin 94.6 0.029 9.9E-07 41.8 3.6 25 9-33 83-107 (355)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.4e-38 Score=224.77 Aligned_cols=158 Identities=37% Similarity=0.632 Sum_probs=130.1
Q ss_pred CCCCC---CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchh
Q 031263 1 MATTG---NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAP 77 (162)
Q Consensus 1 m~~~~---~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 77 (162)
|++.+ ++.+.+||+|+|+++||||||+++|.++.|...+.+|++.++..+.+..++..+.+++|||+|+++|..++.
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~ 80 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP 80 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence 55443 334679999999999999999999999999999999999999899998999999999999999999999999
Q ss_pred hhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
.++++++++++|||+++++||+.+..|+..+.....+++|++|||||+|+.+.+.++.++++.++...+++++++|+..+
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg 160 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAG 160 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTT
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCC
Confidence 99999999999999999999999999999998887789999999999999999999999999998888888777766554
Q ss_pred c
Q 031263 158 S 158 (162)
Q Consensus 158 ~ 158 (162)
.
T Consensus 161 ~ 161 (216)
T 4dkx_A 161 Y 161 (216)
T ss_dssp B
T ss_pred c
Confidence 3
No 2
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=4.4e-33 Score=190.62 Aligned_cols=157 Identities=82% Similarity=1.121 Sum_probs=136.3
Q ss_pred CCCCCCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhh
Q 031263 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 80 (162)
Q Consensus 1 m~~~~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 80 (162)
|+.++.+...+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++
T Consensus 3 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 82 (181)
T 2efe_B 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 82 (181)
T ss_dssp -------CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHH
T ss_pred ccCCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHh
Confidence 66667777889999999999999999999999999887888888888888888888889999999999999999999999
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+.+|++++|||++++.+++.+..|+..+.....+++|+++|+||+|+...+.+..++.+.++...+++++++|+..+
T Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 159 (181)
T 2efe_B 83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTA 159 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSC
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCC
Confidence 99999999999999999999999999998887679999999999999888888888888877777788888776554
No 3
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=2.9e-32 Score=184.43 Aligned_cols=153 Identities=62% Similarity=0.916 Sum_probs=136.6
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.+.+.+||+++|.+++|||||++++.++.+...+.++.+.++.......++..+.+.+||+||++.+...+..+++.+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1r2q_A 2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQA 81 (170)
T ss_dssp CEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCE
Confidence 34578999999999999999999999999888788888888888888888889999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+++|||++++.+++.+..|+..+.....+++|+++|+||+|+...+.+..++++..+...+++++++|+.++.
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 154 (170)
T 1r2q_A 82 AIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSM 154 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 9999999999999999999999988767899999999999998878888888887777677878877766543
No 4
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-32 Score=191.88 Aligned_cols=153 Identities=36% Similarity=0.599 Sum_probs=137.1
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
..+..+||+++|.+++|||||+++|.++.+...+.++++.++....+..++..+.+.+||++|++++..++..+++.+|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 44567999999999999999999999999988888999999888888899988999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+++|||++++.+|+.+..|+..+......++|+++|+||+|+.+.+.+..++++.++...+++++++|+.++.
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~ 174 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESD 174 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 9999999999999999999999988766789999999999998888888888877776667788887766543
No 5
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=8.8e-32 Score=182.18 Aligned_cols=152 Identities=44% Similarity=0.689 Sum_probs=136.4
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
..+.+||+++|.+++|||||++++.+..+...+.++.+.++.......++....+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45679999999999999999999999998887889999888888888888889999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
++|||++++.++..+..|+..+.....+..|+++|+||+|+.+.+.+..++.+..+...+++++++|+.++.
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAI 154 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCc
Confidence 999999999999999999999988877899999999999998888888888887777777777777765543
No 6
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=6.2e-33 Score=190.45 Aligned_cols=151 Identities=33% Similarity=0.599 Sum_probs=108.2
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
.+..+||+++|++++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 46689999999999999999999999988877888999888888888888889999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
++|||++++.+|+.+..|+..+.....+++|+++|+||+|+.+.+.+..++++..+...+++++++|+.++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKAN 155 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 99999999999999999999998876678999999999999888888888888777767778887776554
No 7
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=191.20 Aligned_cols=152 Identities=37% Similarity=0.590 Sum_probs=126.1
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
..+..+||+++|.+++|||||++++.++.+...+.++++.++....+..++..+.+.+||++|++++..++..+++.+|+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 34567999999999999999999999999887788888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCC-Ceeecccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKW-PILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 157 (162)
+++|||++++.+|+.+..|+..+......++|+++|+||+|+.+.+.+..++++..+...++ +++++|+..+
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g 177 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDS 177 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 99999999999999999999999887667899999999999988888888888887777777 6666665444
No 8
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=3e-32 Score=188.56 Aligned_cols=153 Identities=33% Similarity=0.595 Sum_probs=132.3
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 84 (162)
....+.+||+++|.+++|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 34567799999999999999999999999988878888888888888888988899999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++++.++...+++++++|+.++
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTA 168 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 9999999999999999999999998876678999999999999887888888888777766777777766554
No 9
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=8.9e-32 Score=188.14 Aligned_cols=152 Identities=39% Similarity=0.631 Sum_probs=137.0
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
..+..+||+|+|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 34667999999999999999999999999988888999988888888889988999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+++|||++++.++..+..|+..+.....++.|+++|+||+|+...+.+..++++.++...+++++++|+..+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 155 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDS 155 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 999999999999999999999998876678999999999999888888888888777767788888776554
No 10
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=185.85 Aligned_cols=153 Identities=38% Similarity=0.613 Sum_probs=138.8
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.....+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 34567999999999999999999999999988888999988888888899989999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+++|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..++++..+...+++++++|+.++.
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNAT 164 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 9999999999999999999999988877789999999999999888898888888877778888887765543
No 11
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.9e-32 Score=186.70 Aligned_cols=153 Identities=48% Similarity=0.711 Sum_probs=136.4
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
..++.+||+++|.+++|||||++++.+..+...+.++.+.++....+..++....+.+||+||++++...+..+++.+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 44667999999999999999999999999887788899988888888888888999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+++|||++++.+++.+..|+..+.....+++|+++|+||+|+.+.+.+..++++..+...+++++++|+..+.
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAI 171 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTB
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCc
Confidence 9999999999999999999999988866789999999999998778888888888888778888877765543
No 12
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=6.1e-32 Score=185.79 Aligned_cols=153 Identities=35% Similarity=0.579 Sum_probs=137.2
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
..++.+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 45678999999999999999999999999988888899888888888889888999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+++|||++++.++..+..|+..+......++|+++|+||+|+...+.+..++++..+...+++++++|+.++.
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGE 158 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCC
Confidence 9999999999999999999999988766789999999999998878888888887777778888887766543
No 13
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=2.6e-32 Score=184.97 Aligned_cols=151 Identities=37% Similarity=0.651 Sum_probs=127.7
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
....+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45679999999999999999999999998887888998888888888888889999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
++|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++++..+...+++++++|+.++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQN 153 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCC
Confidence 99999999999999999999988765578999999999999888888888888877777777877766554
No 14
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=8.5e-32 Score=183.68 Aligned_cols=153 Identities=36% Similarity=0.604 Sum_probs=136.8
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.....+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 44567999999999999999999999999888788888888888888888889999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++..+...+++++++|+..+.
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGE 163 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 9999999999999999999999988776789999999999998888888888888777777888887766543
No 15
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.4e-31 Score=184.77 Aligned_cols=153 Identities=34% Similarity=0.564 Sum_probs=135.5
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
..+..+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 34567999999999999999999999999888788888888888888888889999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++.+..+...+++++++|+..+.
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 170 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENI 170 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 9999999999999999999999988766789999999999998888888877777776667777777765543
No 16
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=183.51 Aligned_cols=153 Identities=35% Similarity=0.569 Sum_probs=134.0
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 84 (162)
......+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 83 (181)
T 3tw8_B 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH 83 (181)
T ss_dssp --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence 45567899999999999999999999999988888899998888888889998899999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
++++|||++++.++..+..|+..+.... ++.|+++|+||+|+...+.+..++.+..+...+++++++|+.++.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (181)
T 3tw8_B 84 GVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENV 156 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 9999999999999999999999998764 689999999999998888888888887777777888887766553
No 17
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-31 Score=181.39 Aligned_cols=150 Identities=49% Similarity=0.769 Sum_probs=133.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
+.+||+++|.+++|||||++++.++.+...+.++.+.++.......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999999888788999888888888888889999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc---ccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA---RKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|||++++.++..+..|+..+.....++.|+++|+||+|+... +.+..++.+..+...+++++++|+.++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE 154 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 999999999999999999998876688999999999999765 6777777777766667777777766543
No 18
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-31 Score=182.95 Aligned_cols=154 Identities=34% Similarity=0.590 Sum_probs=127.4
Q ss_pred CCCcccceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q 031263 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82 (162)
Q Consensus 4 ~~~~~~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 82 (162)
+...++.+||+++|.+++|||||++++.+..+. ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++.
T Consensus 4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 83 (180)
T 2g6b_A 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD 83 (180)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence 345567899999999999999999999999885 4567888888877777889988999999999999999999999999
Q ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 83 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+|++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++.+..+...+++++++|+.++
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTG 158 (180)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 999999999999999999999999998876678999999999999888888888877777666778888776554
No 19
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-32 Score=191.21 Aligned_cols=151 Identities=39% Similarity=0.659 Sum_probs=127.1
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
....+||+|+|.+++|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++..++..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 35679999999999999999999999999887888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
++|||++++.+|+.+..|+..+......++|+++|+||+|+...+.+..++++.++...+++++++|+..+
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS 160 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 99999999999999999999998876678999999999999888888888888777767777777766544
No 20
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.6e-31 Score=182.05 Aligned_cols=150 Identities=29% Similarity=0.405 Sum_probs=132.3
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
..+.+||+++|.+++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++..++..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 35689999999999999999999999998888888888777 77777899899999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
++|||++++++++.+..|+..+.... ..++|+++|+||+|+...+.+..++++..+...+++++++|+.++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCC
Confidence 99999999999999999999987653 358999999999999888999999998888878888887776554
No 21
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=2.1e-31 Score=183.92 Aligned_cols=151 Identities=32% Similarity=0.571 Sum_probs=133.9
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-cchhhhhcCCcE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-SLAPMYYRGAAA 85 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~ 85 (162)
..+.+||+++|.+++|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++++. .++..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3467999999999999999999999999988888898888888888888888999999999999998 888999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+++|||++++.++..+..|+..+.... ..+.|+++|+||+|+...+.+..++.+.++...+++++++|+..+
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP 169 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcC
Confidence 999999999999999999999998764 468999999999999888888888888777777788888776654
No 22
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-31 Score=184.58 Aligned_cols=152 Identities=35% Similarity=0.626 Sum_probs=135.6
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.....+||+|+|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++++..++..+++.+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 44567999999999999999999999999988888888888888888888889999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+++|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..++++.++...+++++++|+.++
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 172 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDS 172 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 999999999999999999999998876678999999999999887888888888777767787777766554
No 23
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.6e-32 Score=186.56 Aligned_cols=153 Identities=30% Similarity=0.539 Sum_probs=127.3
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 84 (162)
......+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 34556799999999999999999999999888778888888888888888888899999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCC-CCCeeecccccc
Q 031263 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPG-KWPILYGNLCKN 157 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~ 157 (162)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++++..+... .++++++|+.++
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g 174 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDN 174 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 9999999999999999999999998876678999999999999888888888877776653 667777665544
No 24
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=3e-31 Score=184.96 Aligned_cols=152 Identities=32% Similarity=0.551 Sum_probs=135.0
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
....+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 45679999999999999999999999998887888888888888888888899999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++..+...+++++++|+..+.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNI 156 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 999999999999999999999988766789999999999998888888888777776667777777665543
No 25
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.7e-31 Score=182.25 Aligned_cols=149 Identities=28% Similarity=0.449 Sum_probs=133.4
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
...+.+||+++|.+++|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++.+..++..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 445679999999999999999999999988888888888776 6777788988999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLC 155 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 155 (162)
+++|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..++++..+...+++++++|+.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 163 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccC
Confidence 99999999999999999999998664 34789999999999998888999998888887778888887776
No 26
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=1.7e-31 Score=182.18 Aligned_cols=150 Identities=37% Similarity=0.635 Sum_probs=134.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
.+.+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999999988888899988888888888998899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+..++.+..+...+++++++|+..+
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 161 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999999998876678999999999999888888888877777666777777766554
No 27
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.4e-31 Score=180.82 Aligned_cols=150 Identities=33% Similarity=0.567 Sum_probs=133.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
+..+||+++|.+|+|||||++++.++.+...+.++.+.++....+..++....+.+||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+.+.+..++++..+...+++++++|+.++.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDL 152 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCC
Confidence 9999999999999999999987765 788999999999998878888888887777667777777665543
No 28
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.5e-32 Score=187.53 Aligned_cols=153 Identities=36% Similarity=0.596 Sum_probs=125.5
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
..+..+||+|+|.+++|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 100 (200)
T 2o52_A 21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 100 (200)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence 34567999999999999999999999999888788888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+++|||++++.+++.+..|+..+.....+++|+++|+||+|+...+.+...+++..+...+++++++|+.++.
T Consensus 101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 173 (200)
T 2o52_A 101 ALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGE 173 (200)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 9999999999999999999999988766789999999999998878888888887777777888877765543
No 29
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.98 E-value=7.9e-31 Score=178.80 Aligned_cols=151 Identities=32% Similarity=0.575 Sum_probs=129.0
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.....+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 45678999999999999999999999999888888999988888888889988999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCC----CCCeEEEEEeCCCCcCcccCCHHHHhhhcC-CCCCCeeecccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKADLLDARKVTAEARSTSLC-PGKWPILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~ 157 (162)
+++|||++++.++..+..|+..+..... .++|+++|+||+|+. .+.+..++++..+. ...++++++|+.++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDA 158 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence 9999999999999999999999877543 688999999999997 56677777777766 56777887776554
No 30
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=1.7e-32 Score=189.88 Aligned_cols=154 Identities=33% Similarity=0.563 Sum_probs=137.8
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 84 (162)
+..+..+||+|+|.+++|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM 97 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence 34567899999999999999999999999988878888888888888888888899999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
++++|||++++.+|+.+..|+..+......++|+++|+||+|+.+.+.+..++++..+...+++++++|+.++.
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENI 171 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 99999999999999999999999988876899999999999998888888888888777778888877765543
No 31
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.98 E-value=6e-31 Score=179.74 Aligned_cols=153 Identities=25% Similarity=0.403 Sum_probs=132.4
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 84 (162)
......+||+++|.+++|||||++++.+..+...+.++.+..+. .....++..+.+.+||+||++++..++..+++.+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 34466799999999999999999999999888888888887764 66778888899999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 85 AAIIVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
++++|||++++.++..+..|+..+.. ....+.|+++|+||+|+...+.+..++++......+++++++|+..+.
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 157 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRL 157 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCC
Confidence 99999999999999999999998854 445689999999999998888888888887777677778877765543
No 32
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.98 E-value=2.9e-31 Score=179.62 Aligned_cols=149 Identities=37% Similarity=0.645 Sum_probs=125.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
..+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999999888788888888878888888888999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|||++++.+++.+..|+..+.....++.|+++|+||+|+ ..+.+..++.+..+...+++++++|+.++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDD 150 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTB
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 999999999999999999998886678999999999999 456677777777666667788887766543
No 33
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.98 E-value=2.9e-31 Score=183.30 Aligned_cols=150 Identities=23% Similarity=0.375 Sum_probs=125.4
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
...+.+||+++|.++||||||++++.++.+...+.++.+..+ ......++..+.+.+||++|++.+..+ ..+++.+++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 345679999999999999999999999998888888888776 455677888999999999999988875 678999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+++|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++++.++...+++++++|+.++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 169 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLD 169 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCc
Confidence 999999999999999999999987763 268899999999999888888888888877777788888777333
No 34
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.98 E-value=4.9e-31 Score=182.00 Aligned_cols=153 Identities=29% Similarity=0.530 Sum_probs=132.8
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEE-EEEEEECCe---------EEEEEEEeCCCccccccc
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFF-SQTLAVNDA---------TVKFEIWDTAGQERYHSL 75 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~D~~g~~~~~~~ 75 (162)
.....+||+++|.+++|||||++++.++.+...+.++.+.++. ...+..++. .+.+.+||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4566799999999999999999999999988878888888876 566666655 789999999999999999
Q ss_pred hhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccc
Q 031263 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNL 154 (162)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 154 (162)
+..+++.+|++++|||++++.++..+..|+..+..... .++|+++|+||+|+...+.+..++++..+...+++++++|+
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999988654 68999999999999887888888887777666778888776
Q ss_pred cccc
Q 031263 155 CKNS 158 (162)
Q Consensus 155 ~~~~ 158 (162)
.++.
T Consensus 167 ~~~~ 170 (195)
T 3bc1_A 167 ANGT 170 (195)
T ss_dssp TTCT
T ss_pred CCCC
Confidence 6543
No 35
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.98 E-value=8.7e-32 Score=183.72 Aligned_cols=151 Identities=29% Similarity=0.448 Sum_probs=129.2
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
..+.+||+++|++++|||||++++.++.+...+.++.+.++....+..++ ..+.+.+||+||++.+..++..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45679999999999999999999999988776778888777788887776 67899999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGN---PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+++|||++++.+++.+..|+..+..... ..+|+++|+||+|+.+.+.+..++++..+...+++++++|+.++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 9999999999999999999998877421 34458999999999887888888887777666777777766554
No 36
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.98 E-value=3.1e-31 Score=186.88 Aligned_cols=151 Identities=25% Similarity=0.410 Sum_probs=128.4
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.....+||+++|+++||||||+++|.++.+...+.++.+.++ ...+..++..+.+.+||++|++++..++..+++.+|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 345679999999999999999999999999988889998776 4566678888999999999999999999999999999
Q ss_pred EEEEEECCChHHHHH-HHHHHHHHHHhCCCCCeEEEEEeCCCCcCc------------ccCCHHHHhhhcCCCCC-Ceee
Q 031263 86 AIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEARSTSLCPGKW-PILY 151 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 151 (162)
+++|||++++++|+. +..|+..+.... +++|+++|+||+|+.+. +.+..++++.++...++ ++++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 180 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE 180 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence 999999999999999 689999998874 78999999999999763 77888888888887787 6777
Q ss_pred ccccccc
Q 031263 152 GNLCKNS 158 (162)
Q Consensus 152 ~s~~~~~ 158 (162)
+|+.++.
T Consensus 181 ~SA~~g~ 187 (214)
T 3q3j_B 181 GSAFTSE 187 (214)
T ss_dssp CCTTTCH
T ss_pred eccCCCc
Confidence 6665543
No 37
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=2.1e-31 Score=185.22 Aligned_cols=153 Identities=22% Similarity=0.254 Sum_probs=124.9
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-chhhhhcCCc
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-LAPMYYRGAA 84 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~ 84 (162)
.....+||+++|+++||||||+++|.+......+.++.+.++....+.+++..+.+.+||++|+..+.. ++..+++.++
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 445679999999999999999999986544433445556666677778899999999999999987764 7788899999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 85 AAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
++++|||++++.+|+.+..|+..+..... .++|+++|+||+|+...+.+..++++.++...+++++++|+..+.
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHH 173 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCC
Confidence 99999999999999999999999887643 589999999999998888888888877776667777777766543
No 38
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=2.1e-31 Score=185.49 Aligned_cols=152 Identities=30% Similarity=0.497 Sum_probs=120.4
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
..++.+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 34567999999999999999999999999887788888888878888889989999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc------CcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL------DARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+++|||++++.+++.+..|+..+......++|+++|+||+|+. ..+.+..++++..+...+++++++|+..+
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g 181 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDG 181 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTC
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCC
Confidence 9999999999999999999999988766789999999999996 45677777777776666777777766554
No 39
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=2.4e-30 Score=180.68 Aligned_cols=152 Identities=34% Similarity=0.606 Sum_probs=129.7
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.+++.+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 34678999999999999999999999999888888999888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCC----CCCeEEEEEeCCCCcCcccCCHHHHhhhcC-CCCCCeeeccccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKADLLDARKVTAEARSTSLC-PGKWPILYGNLCKNS 158 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~ 158 (162)
+++|||++++.++..+..|+..+..... .+.|+++|+||+|+. .+.+..++++.++. ...++++++|+..+.
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCC
Confidence 9999999999999999999998877542 578999999999997 45666666666655 567788887765543
No 40
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3e-30 Score=178.44 Aligned_cols=151 Identities=34% Similarity=0.578 Sum_probs=131.9
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
...+.+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 33567999999999999999999999999888888999888888888889999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+++|||++++.++..+..|+..+.... ..++|+++|+||+|+. .+.+..++++.++...+++++++|+.++
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTC 162 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCC
Confidence 999999999999999999999987754 3679999999999994 4567777777777767777777766554
No 41
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=3.2e-30 Score=180.82 Aligned_cols=151 Identities=35% Similarity=0.632 Sum_probs=130.6
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
....+||+|+|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34579999999999999999999999998887888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
++|||++++.+++.+..|+..+......++|+++|+||+|+ ..+.+..++.+..+...+++++++|+.++.
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDD 167 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999998876678999999999999 456677777776666567788887765543
No 42
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=3.3e-30 Score=178.63 Aligned_cols=150 Identities=25% Similarity=0.414 Sum_probs=128.3
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
...+.+||+++|.+++|||||++++.++.+...+.++.+.++. ..+..++..+.+.+||+||++++..++..+++.+|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3456799999999999999999999999988888888887764 456788889999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcCc--ccCCHHHHhhhcCCCCCC-eeecccccc
Q 031263 86 AIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA--RKVTAEARSTSLCPGKWP-ILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~s~~~~ 157 (162)
+++|||++++.+|+.+ ..|+..+... .+++|+++|+||+|+... +.+..++++..+...++. ++++|+.++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAK 172 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence 9999999999999997 7898888876 478999999999999753 778888888877777777 666665544
No 43
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=1.5e-30 Score=176.20 Aligned_cols=149 Identities=22% Similarity=0.259 Sum_probs=116.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-chhhhhcCCcEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-LAPMYYRGAAAAII 88 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~ 88 (162)
.+||+++|++++|||||++++.+......+.++.+.+.....+..++..+.+.+||++|+.++.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999998777665666666777788888899999999999999988875 77788899999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|||++++++|+.+..|+..+..... .++|+++|+||+|+.+.+.+..++++..+...+++++++|+.++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHH 152 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCC
Confidence 9999999999999999999887643 589999999999998888999999888888778888887776553
No 44
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=9e-31 Score=182.57 Aligned_cols=149 Identities=28% Similarity=0.379 Sum_probs=126.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
.+.+||+++|.+++|||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++++..++..+++.+|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4679999999999999999999999999888888888776 666667777899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+|||++++++++.+..|+..+.... ..++|+++|+||+|+...+.+..++++..+...+++++++|+.++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSAREN 171 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCC
Confidence 9999999999999999999987753 357899999999999888889988888877777787887776654
No 45
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=2.3e-30 Score=174.71 Aligned_cols=148 Identities=30% Similarity=0.457 Sum_probs=126.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
+.+||+++|.+++|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++++..++..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 368999999999999999999999988887888887665 4556677788999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCC-CCCeeecccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPG-KWPILYGNLCKN 157 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~ 157 (162)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+..+... .++++++|+.++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSK 151 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCC
Confidence 999999999999999999887753 468999999999999888888888877766654 566777666554
No 46
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=1.4e-30 Score=178.08 Aligned_cols=152 Identities=34% Similarity=0.637 Sum_probs=115.1
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCc
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 84 (162)
.....+||+++|.+++|||||++++.+..+...+.++.+.++....+..+ +....+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 44678999999999999999999999999888788888877777777776 55689999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCC----CCCeEEEEEeCCCCc-CcccCCHHHHhhhcC-CCCCCeeecccccc
Q 031263 85 AAIIVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKADLL-DARKVTAEARSTSLC-PGKWPILYGNLCKN 157 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piiiv~nK~D~~-~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~ 157 (162)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ..+.+..++++..+. ...++++++|+..+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNA 162 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCC
Confidence 99999999999999999999999877543 688999999999995 345567777776665 45677777766554
No 47
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=5.8e-31 Score=185.34 Aligned_cols=152 Identities=32% Similarity=0.539 Sum_probs=131.6
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCe----------EEEEEEEeCCCccccccc
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----------TVKFEIWDTAGQERYHSL 75 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~D~~g~~~~~~~ 75 (162)
..++.+||+|+|.+++|||||+++|.+..+...+.++.+.++....+..++. .+.+.+||+||++.+...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 3456799999999999999999999999888777888888877777777665 789999999999999999
Q ss_pred hhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccc
Q 031263 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNL 154 (162)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 154 (162)
+..+++.+|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..++++..+...+++++++|+
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 180 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence 99999999999999999999999999999888766543 68999999999999888888888888877777788888776
Q ss_pred ccc
Q 031263 155 CKN 157 (162)
Q Consensus 155 ~~~ 157 (162)
.++
T Consensus 181 ~~g 183 (217)
T 2f7s_A 181 ATG 183 (217)
T ss_dssp TTT
T ss_pred CCC
Confidence 654
No 48
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=6.7e-30 Score=177.51 Aligned_cols=149 Identities=40% Similarity=0.670 Sum_probs=128.8
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeE----------------------------
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT---------------------------- 58 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 58 (162)
++..+||+|+|.+++|||||+++|++..+...+.++.+.++....+..++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3567999999999999999999999999888888898888877777776654
Q ss_pred ---------EEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 59 ---------VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 59 ---------~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
..+.+||+||++.+...+..+++.+|++++|||++++.++..+..|+..+.... ..|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cc
Confidence 899999999999999999999999999999999999999999999999998875 389999999999 56
Q ss_pred cccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 130 ARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
.+.+..++++.++...+++++++|+.++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 189 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGT 189 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCC
Confidence 67788888888887778878877766543
No 49
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=175.74 Aligned_cols=149 Identities=27% Similarity=0.360 Sum_probs=116.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc--cccchhhhhcCCcEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--YHSLAPMYYRGAAAA 86 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~~~~~~~~~~~ 86 (162)
+.+||+++|++++|||||++++.+..+... .++.+.++....+..++..+.+.+||++|+.. +..+...+++.++++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 468999999999999999999999887653 34566666677788888889999999999987 566777888999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
++|||++++.+|+.+..|+..+.... .+++|+++|+||+|+.+.+.+..++++......+++++++|+.++.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~ 154 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQH 154 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCC
Confidence 99999999999999999999887753 3589999999999998888888887777666567778877766553
No 50
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=4e-30 Score=176.47 Aligned_cols=152 Identities=27% Similarity=0.431 Sum_probs=130.0
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
...+.+||+++|.+++|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++++..++..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 344679999999999999999999999998877777777655 4556678888999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+++|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..++++..+...+++++++|+.++.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRA 166 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCC
Confidence 9999999999999999999999877643 589999999999998888888888888877777887777766543
No 51
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=5.1e-30 Score=176.69 Aligned_cols=145 Identities=18% Similarity=0.310 Sum_probs=122.1
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
...+.+||+++|++|||||||+++++++.+...+.++.+ .+ ...+.+++..+.+.+|||+|++.+. +++.+|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 445679999999999999999999999998877777743 33 5777889999999999999998776 7788999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCC--cCcccCCHHHHhhhcCCCC-CCeeecccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADL--LDARKVTAEARSTSLCPGK-WPILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~--~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~ 157 (162)
+++|||++++.+|+.+..|+..+..... .++|+++|+||+|+ ...+.+..++++..+...+ ++++++|+.++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 164 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYG 164 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCC
Confidence 9999999999999999999999988754 68999999999999 4567788888888777665 56666665443
No 52
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=3.3e-30 Score=173.81 Aligned_cols=149 Identities=27% Similarity=0.438 Sum_probs=126.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
+.+||+++|.+|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++++..++..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 468999999999999999999999998877777777655 4556678888999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++++..+...+++++++|+.++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRA 152 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCC
Confidence 9999999999999999999877643 589999999999998888888888887777667777777765543
No 53
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=4.2e-31 Score=184.44 Aligned_cols=149 Identities=23% Similarity=0.400 Sum_probs=97.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhC--CCCCCCccceeeEEEEEEEEECCe--EEEEEEEeCCCccccccchhhhhcCC
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVNDA--TVKFEIWDTAGQERYHSLAPMYYRGA 83 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~ 83 (162)
...+||+++|.+++|||||++++.+. .+...+.++.+.++....+..++. .+.+.+||+||++.+..++..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 35689999999999999999999998 777777888887777788878876 88999999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCCcC-cccCCHHHHhhhcCCCCCCeeeccccc
Q 031263 84 AAAIIVYDITNQASFERAKKWVQELQAQGN---PNMVMALAGNKADLLD-ARKVTAEARSTSLCPGKWPILYGNLCK 156 (162)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (162)
|++++|||++++.+|+.+..|+..+..... .++|+++|+||+|+.. .+.+..++++.++...+++++++|+..
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 174 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANP 174 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC--
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCC
Confidence 999999999999999999999999988765 6899999999999988 788888888888877788888877665
No 54
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=4.3e-30 Score=173.11 Aligned_cols=148 Identities=30% Similarity=0.458 Sum_probs=128.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
+.+||+++|++++|||||++++.++.+...+.++.+..+ ......++....+.+||+||++++..++..+++.++++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 368999999999999999999999998877777776544 6667788888999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++.+..+...+++++++|+.++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 150 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSK 150 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCC
Confidence 999999999999999999887754 368999999999999888888888877777666778888776554
No 55
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=5.9e-30 Score=178.49 Aligned_cols=150 Identities=27% Similarity=0.428 Sum_probs=130.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
.+.+||+|+|.+++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 4569999999999999999999999998877788887665 456677888899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+|||++++.++..+..|+..+..... .++|+++|+||+|+...+.+..++++..+...+++++++|+.++.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 162 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRA 162 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCC
Confidence 99999999999999999999987643 589999999999998888888888887777667777777665543
No 56
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=4.2e-30 Score=176.78 Aligned_cols=147 Identities=26% Similarity=0.466 Sum_probs=124.2
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
....+||+++|++++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999998877888887765 45566788889999999999999999999999999999
Q ss_pred EEEEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcCc------------ccCCHHHHhhhcCCCC-CCeeec
Q 031263 87 IIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEARSTSLCPGK-WPILYG 152 (162)
Q Consensus 87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 152 (162)
++|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.+. +.++.++++.++...+ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 78999887764 68999999999999642 5677777777765544 567776
Q ss_pred ccc
Q 031263 153 NLC 155 (162)
Q Consensus 153 s~~ 155 (162)
|+.
T Consensus 162 Sa~ 164 (184)
T 1m7b_A 162 SAL 164 (184)
T ss_dssp BTT
T ss_pred eec
Confidence 665
No 57
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=6e-30 Score=172.75 Aligned_cols=147 Identities=22% Similarity=0.315 Sum_probs=105.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
.+||+++|++|+|||||++++.+..... ..++.+.++ ...+..++..+.+.+||++|++.+..++..+++.++++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 5899999999999999999999776553 345555554 45667888999999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
||++++++|+.+..|+..+.... .+++|+++|+||+|+...+.+..++++......+++++++|+.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHH 149 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTB
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCC
Confidence 99999999999999999987753 3689999999999999888899888888777777778877776553
No 58
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=2.1e-30 Score=182.61 Aligned_cols=154 Identities=27% Similarity=0.492 Sum_probs=127.7
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCC
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGA 83 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~ 83 (162)
..+...+||+++|.+++|||||+++++++.+...+.++.+.+.........+ ..+.+.+||++|++.+..++..+++.+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 3456779999999999999999999999988877778887776666554443 448899999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 84 AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+..+...+++++++|+.++.
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAH 160 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTB
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCC
Confidence 999999999999999999999999988766679999999999998888888888888888888888887765543
No 59
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=7.3e-30 Score=176.79 Aligned_cols=149 Identities=26% Similarity=0.408 Sum_probs=125.5
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
....+||+++|.+++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 35679999999999999999999999988877788887665 45566777889999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCc------------ccCCHHHHhhhcCCCCC-Ceeec
Q 031263 87 IIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEARSTSLCPGKW-PILYG 152 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 152 (162)
++|||++++++|..+. .|+..+.... +++|+++|+||+|+... +.+..++++.++...+. +++++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 172 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence 9999999999999997 8999988874 58999999999999754 46777777766655555 67776
Q ss_pred ccccc
Q 031263 153 NLCKN 157 (162)
Q Consensus 153 s~~~~ 157 (162)
|+.++
T Consensus 173 Sa~~g 177 (194)
T 2atx_A 173 SALTQ 177 (194)
T ss_dssp CTTTC
T ss_pred eCCCC
Confidence 66554
No 60
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=5.4e-32 Score=188.49 Aligned_cols=152 Identities=38% Similarity=0.613 Sum_probs=126.9
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.....+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 34567999999999999999999999998888778888888888888889988999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+++|||++++.+|+.+..|+..+......++|+++|+||+|+...+.+..++++..+...+++++++|+.++
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 180 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNA 180 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCC
Confidence 999999999999999999999998876678999999999999888888777777777777788887766544
No 61
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=8.8e-30 Score=173.96 Aligned_cols=143 Identities=22% Similarity=0.320 Sum_probs=117.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
.+.+||+++|+++||||||++++.++.+.. +.++.+..+ .+.+..++..+.+.+||++|+++ ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 457999999999999999999999998876 777777554 66777888889999999999876 46788899999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh---CCCCCeEEEEEeCCCCc--CcccCCHHHHhhhcCCC-CCCeeecccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQ---GNPNMVMALAGNKADLL--DARKVTAEARSTSLCPG-KWPILYGNLCKN 157 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~ 157 (162)
+|||++++++|+.+..|+..+... ..+++|+++|+||+|+. ..+.+..++++.++... +++++++|+.++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYG 153 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEecccc
Confidence 999999999999999976665543 33689999999999994 56778888877766543 567777666544
No 62
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=7e-30 Score=178.93 Aligned_cols=148 Identities=26% Similarity=0.471 Sum_probs=124.2
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.....+||+++|++++|||||+++|.+..+...+.++.+.++ ...+..++..+.+.+||++|++.|..++..+++.+++
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 345679999999999999999999999999887888888766 4556678888999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcC------------cccCCHHHHhhhcCCCC-CCeee
Q 031263 86 AIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEARSTSLCPGK-WPILY 151 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 151 (162)
+++|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.. .+.+..++++.++...+ +++++
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 181 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 181 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999998 78999988764 6899999999999964 25677777777665544 56777
Q ss_pred cccc
Q 031263 152 GNLC 155 (162)
Q Consensus 152 ~s~~ 155 (162)
+|+.
T Consensus 182 ~SAk 185 (205)
T 1gwn_A 182 CSAL 185 (205)
T ss_dssp CCTT
T ss_pred eeec
Confidence 6665
No 63
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=8.5e-30 Score=176.88 Aligned_cols=150 Identities=31% Similarity=0.446 Sum_probs=128.4
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
..+.+||+++|.+++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++. ...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 35679999999999999999999999998887888887665 55567788889999999999988 77888899999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
++|||++++++|+.+..|+..+.... ..++|+++|+||+|+...+.+..++++..+...+++++++|+..+.
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~ 175 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGE 175 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCC
Confidence 99999999999999999999987753 3689999999999998888888888887776667778877766543
No 64
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=6e-30 Score=180.08 Aligned_cols=152 Identities=24% Similarity=0.317 Sum_probs=120.5
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc-cccchhhhhcCCc
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSLAPMYYRGAA 84 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~ 84 (162)
....+||+++|+++||||||+++|.+.... ....++++.++..+.+.+++..+.+.+|||+|+.. +..+...+++.++
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 345699999999999999999999964431 22334566677777888899899999999999876 5566677888999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 85 AAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
++++|||++++.+|+.+..|+..+.... .+++|++|||||+|+.+.+.+..++++.++...+++++++|+.++.
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH 188 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 9999999999999999999998887642 3579999999999998778888877776655556777777766543
No 65
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=176.05 Aligned_cols=150 Identities=25% Similarity=0.429 Sum_probs=116.9
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
...+.+||+++|.+++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++..++..+++.+|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 346689999999999999999999999988777778877554 5566788888999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcC------------cccCCHHHHhhhcCCCCC-Ceee
Q 031263 86 AIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEARSTSLCPGKW-PILY 151 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 151 (162)
+++|||++++.+|..+. .|+..+.... +++|+++|+||+|+.. .+.+..++++......+. ++++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999997 7999988774 5899999999999965 356677777766655454 6666
Q ss_pred cccccc
Q 031263 152 GNLCKN 157 (162)
Q Consensus 152 ~s~~~~ 157 (162)
+|+.++
T Consensus 174 ~Sa~~g 179 (201)
T 2q3h_A 174 CSALTQ 179 (201)
T ss_dssp CCTTTC
T ss_pred EecCCC
Confidence 665544
No 66
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=5.8e-29 Score=171.05 Aligned_cols=149 Identities=26% Similarity=0.453 Sum_probs=124.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
++.+||+++|.+|+|||||++++.+..+...+.++.+. .....+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 45799999999999999999999999988777777754 44566778888899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+. .+.+..++.+......+++++++|+..+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 151 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQ 151 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 9999999999999999999987753 3689999999999986 45666777777766667888887766543
No 67
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.6e-29 Score=171.26 Aligned_cols=149 Identities=27% Similarity=0.380 Sum_probs=124.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (162)
..+||+++|.+++|||||++++.++.+...+.++.+.++ ......++....+.+||+||++++..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999988777777777655 3455678888899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 89 VYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|||++++.+++.+..|+..+.... .++.|+++|+||+|+...+.+...+.+......+++++++|+.++.
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNH 152 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCc
Confidence 999999999999999988887653 2578999999999998888888777776666556777777665543
No 68
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=3.7e-29 Score=171.64 Aligned_cols=148 Identities=28% Similarity=0.433 Sum_probs=124.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
...+||+++|.+++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4579999999999999999999999988877778877654 555678888999999999999999999999999999999
Q ss_pred EEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCc------------ccCCHHHHhhhcCCCCC-Ceeecc
Q 031263 88 IVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEARSTSLCPGKW-PILYGN 153 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 153 (162)
+|||++++.++..+. .|+..+.... ++.|+++|+||+|+... +.+..+++.......+. +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 7999888764 58999999999999654 45666666666655554 677666
Q ss_pred cccc
Q 031263 154 LCKN 157 (162)
Q Consensus 154 ~~~~ 157 (162)
+.++
T Consensus 161 a~~g 164 (186)
T 1mh1_A 161 ALTQ 164 (186)
T ss_dssp TTTC
T ss_pred CCCc
Confidence 5544
No 69
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=2.2e-29 Score=176.04 Aligned_cols=151 Identities=26% Similarity=0.404 Sum_probs=121.1
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 84 (162)
....+.+||+++|.+++|||||++++.++.+...+.++.+.. ....+..++..+.+.+||+||++++..++..+++.+|
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTD 103 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEE-EEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecce-eEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence 345678999999999999999999999998887777777644 4566667888899999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCccc------------CCHHHHhhhcCCCCCC-ee
Q 031263 85 AAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARK------------VTAEARSTSLCPGKWP-IL 150 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~-~~ 150 (162)
++++|||++++.+++.+. .|+..+.... +++|+++|+||+|+...+. +..+++...+...+.. ++
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 4gzl_A 104 VFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEE
Confidence 999999999999999997 8999988875 7899999999999976543 6666666666655544 66
Q ss_pred ecccccc
Q 031263 151 YGNLCKN 157 (162)
Q Consensus 151 ~~s~~~~ 157 (162)
++|+.++
T Consensus 183 ~~SA~~g 189 (204)
T 4gzl_A 183 ECSALTQ 189 (204)
T ss_dssp ECCTTTC
T ss_pred EeeCCCC
Confidence 6555443
No 70
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=1.3e-29 Score=175.31 Aligned_cols=150 Identities=23% Similarity=0.302 Sum_probs=119.7
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCC-----------CccceeeEEEEEEE-EECCeEEEEEEEeCCCcccc
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-----------QESTIGAAFFSQTL-AVNDATVKFEIWDTAGQERY 72 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~g~~~~ 72 (162)
..+.+.+||+++|.++||||||++.+.+ .+... +.++.+.++....+ ..++..+.+.+|||||++++
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 3556789999999999999999966654 44433 23466666555444 56777899999999999999
Q ss_pred ccchhhhhcCCcEEEEEEECC------ChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCC
Q 031263 73 HSLAPMYYRGAAAAIIVYDIT------NQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGK 146 (162)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~ 146 (162)
..++..+++.+|++++|||++ +.++|..+..|+..+.. ...++|+++|+||+|+.+. +..++++..+...+
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~ 164 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEG 164 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcC
Confidence 999999999999999999999 56788888888888733 3478999999999999653 77888888888888
Q ss_pred C-Ceeeccccccc
Q 031263 147 W-PILYGNLCKNS 158 (162)
Q Consensus 147 ~-~~~~~s~~~~~ 158 (162)
+ +++++|+.++.
T Consensus 165 ~~~~~~~Sa~~~~ 177 (198)
T 3t1o_A 165 KFPVLEAVATEGK 177 (198)
T ss_dssp CSCEEECBGGGTB
T ss_pred CceEEEEecCCCc
Confidence 8 77777765543
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=2.6e-29 Score=176.94 Aligned_cols=148 Identities=29% Similarity=0.471 Sum_probs=104.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
.+.+||+++|.+++|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4569999999999999999999999888777777776554 556678888899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCcc------------cCCHHHHhhhcCCCCC-Ceeecc
Q 031263 88 IVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEARSTSLCPGKW-PILYGN 153 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 153 (162)
+|||++++.+|+.+. .|+..+.... +++|+++|+||+|+...+ .+..++++..+...+. +++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999997 7999988764 688999999999997653 5666777766655565 666666
Q ss_pred cccc
Q 031263 154 LCKN 157 (162)
Q Consensus 154 ~~~~ 157 (162)
+.++
T Consensus 190 A~~g 193 (214)
T 2j1l_A 190 ARLH 193 (214)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 5544
No 72
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=6e-29 Score=173.37 Aligned_cols=148 Identities=30% Similarity=0.489 Sum_probs=123.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
...+||+++|.+++|||||++++.+..+...+.++.+.++. ..+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 45799999999999999999999999988878888877654 34667888899999999999999999999999999999
Q ss_pred EEEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcCc------------ccCCHHHHhhhcCCCCC-Ceeecc
Q 031263 88 IVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEARSTSLCPGKW-PILYGN 153 (162)
Q Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 153 (162)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+... +.+..++++..+...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 68988887764 68899999999999765 45666677766655555 566655
Q ss_pred cccc
Q 031263 154 LCKN 157 (162)
Q Consensus 154 ~~~~ 157 (162)
+.++
T Consensus 181 A~~g 184 (201)
T 2gco_A 181 AKTK 184 (201)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 5443
No 73
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=1.1e-29 Score=178.13 Aligned_cols=148 Identities=29% Similarity=0.463 Sum_probs=122.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
...+||+++|++++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999999998877888887665 455667888899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCccc--------CCHHHHhhhcCCCCC-Ceeecccccc
Q 031263 88 IVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARK--------VTAEARSTSLCPGKW-PILYGNLCKN 157 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~s~~~~ 157 (162)
+|||++++.+|+.+. .|+..+.... +++|+++|+||+|+.+.+. +..++++..+...+. +++++|+..+
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999987 8999998774 5899999999999976554 366666666555554 6666665544
No 74
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.96 E-value=1.1e-29 Score=179.54 Aligned_cols=149 Identities=30% Similarity=0.502 Sum_probs=126.3
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
.....+||+++|.++||||||+++++.+.+...+.++.+.++.......++..+.+.+|||+|++.+..++..+++.+++
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 45567999999999999999999988887777778888888888888889999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+++|||++++.++..+..|+..+.... +++|+++|+||+|+.+.... .+...++...+++++++|+..+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~ 159 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSN 159 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCC
Confidence 999999999999999999999998874 68899999999999654432 2444444555677777665544
No 75
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=5.3e-29 Score=172.75 Aligned_cols=151 Identities=25% Similarity=0.374 Sum_probs=124.2
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 84 (162)
+.....+||+++|.+++|||||++++.++.+...+.++.+.++ ......++..+.+.+||+||++++..++..+++.+|
T Consensus 3 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 81 (199)
T 2gf0_A 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGH 81 (199)
T ss_dssp --CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCS
T ss_pred ccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCC
Confidence 3445679999999999999999999999988877778877654 345567888899999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 85 AAIIVYDITNQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
++++|||++++.+++.+..|+..+..... ++.|+++|+||+|+.. +.+..++++..+...+++++++|+..+
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (199)
T 2gf0_A 82 AFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMN 155 (199)
T ss_dssp EEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCC
Confidence 99999999999999999988887766432 5789999999999965 556666666666655677777766554
No 76
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.96 E-value=1.8e-28 Score=169.20 Aligned_cols=149 Identities=26% Similarity=0.439 Sum_probs=115.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
.+.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++..++..+++.+++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 4569999999999999999999999988777777776554 456677888899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+|||++++.++..+..|+..+..... .++|+++|+||+|+.. +.+..++.+..+...+++++++|+..+.
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 168 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQ 168 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 99999999999999999999877543 5789999999999876 5667777777766667788887766543
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.7e-28 Score=171.80 Aligned_cols=148 Identities=28% Similarity=0.476 Sum_probs=116.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
...+||+++|.+++|||||++++.+..+...+.++.+.++. ..+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 35689999999999999999999999988777788777654 34667888899999999999999999999999999999
Q ss_pred EEEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCCCCcCc------------ccCCHHHHhhhcCCCCC-Ceeecc
Q 031263 88 IVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEARSTSLCPGKW-PILYGN 153 (162)
Q Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 153 (162)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+... +.+..++++..+...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 68988887764 68899999999999655 44666666655544444 566655
Q ss_pred cccc
Q 031263 154 LCKN 157 (162)
Q Consensus 154 ~~~~ 157 (162)
+.++
T Consensus 181 A~~g 184 (207)
T 2fv8_A 181 AKTK 184 (207)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 5443
No 78
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.96 E-value=1.8e-28 Score=170.06 Aligned_cols=150 Identities=23% Similarity=0.323 Sum_probs=117.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCC--CCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc-cccchhhhhcCCc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQ--FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSLAPMYYRGAA 84 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~ 84 (162)
...+||+++|++|||||||+++|.+.. +.. ..++.+.++..+.+.+++..+.+.+||++|... +..++..+++.++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDS-DXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCc-cccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 346999999999999999999999643 333 334566667677788899899999999999876 5667788889999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 85 AAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
++++|||+++++||+.+..|+..+.... .+++|+++|+||+|+...+.+..++++......+++++++|+.++.
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQH 157 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCC
Confidence 9999999999999999999998887653 3578999999999998777788777766555556677777665543
No 79
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.96 E-value=2.4e-28 Score=164.25 Aligned_cols=146 Identities=27% Similarity=0.468 Sum_probs=124.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (162)
.+||+++|.+|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 58999999999999999999999988877777776544 55666788889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 90 YDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
||++++.++..+..|+..+..... .+.|+++|+||+|+.. +.+..++.+..+...+++++++|+..+
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 149 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTR 149 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTC
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCC
Confidence 999999999999999999877643 4799999999999876 556667777666666778888776554
No 80
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.96 E-value=1e-29 Score=174.04 Aligned_cols=148 Identities=31% Similarity=0.484 Sum_probs=107.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
.+.+||+++|.+++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 4579999999999999999999999988777777776543 233445666788999999999999999999999999999
Q ss_pred EEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCccc----------CCHHHHhhhcCCCCC-Ceeecccc
Q 031263 88 IVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARK----------VTAEARSTSLCPGKW-PILYGNLC 155 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~~ 155 (162)
+|||++++.+++.+. .|+..+.... +++|+++|+||+|+.+.+. +..++++......+. +++++|+.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999999999999997 7999988874 5899999999999976554 366666666555554 56666655
Q ss_pred cc
Q 031263 156 KN 157 (162)
Q Consensus 156 ~~ 157 (162)
++
T Consensus 164 ~~ 165 (182)
T 3bwd_D 164 SQ 165 (182)
T ss_dssp TC
T ss_pred CC
Confidence 44
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.96 E-value=1.9e-28 Score=170.01 Aligned_cols=149 Identities=20% Similarity=0.292 Sum_probs=112.9
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCC-CCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 84 (162)
......||+|+|.++||||||+++|.+..+.. .+.++.+.. ...+.. ..+.+.+|||+|++.+..++..+++.+|
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 88 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN--VETFEK--GRVAFTVFDMGGAKKFRGLWETYYDNID 88 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE--EEEEEE--TTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee--EEEEEe--CCEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence 44567999999999999999999999999887 678888744 333433 4488999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCC--------CCCeEEEEEeCCCCcCcccCCHHH---Hhhhc-CCCCCCeeec
Q 031263 85 AAIIVYDITNQASFERAKKWVQELQAQGN--------PNMVMALAGNKADLLDARKVTAEA---RSTSL-CPGKWPILYG 152 (162)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~piiiv~nK~D~~~~~~~~~~~---~~~~~-~~~~~~~~~~ 152 (162)
++++|||++++++|..+..|+..+..... .++|+++|+||+|+.......... ....+ ....++++++
T Consensus 89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (199)
T 4bas_A 89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFAS 168 (199)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEEC
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEe
Confidence 99999999999999999999988866421 388999999999997653322111 11112 4567777777
Q ss_pred cccccc
Q 031263 153 NLCKNS 158 (162)
Q Consensus 153 s~~~~~ 158 (162)
|+.++.
T Consensus 169 Sa~~g~ 174 (199)
T 4bas_A 169 NGLKGT 174 (199)
T ss_dssp BTTTTB
T ss_pred eCCCcc
Confidence 766543
No 82
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=1.5e-28 Score=165.49 Aligned_cols=143 Identities=22% Similarity=0.402 Sum_probs=110.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (162)
+||+++|++++|||||++++.++.+.. +.||.+.. ...+.. ....+.+||+||++++..++..+++.+|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999888764 56676633 333333 3478999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCccc---CCHHHHhhhcCCCCCCeeeccccccc
Q 031263 91 DITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARK---VTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
|++++++|..+..|+..+... ..++.|+++|+||+|+.+... +........+....++++++|+.++.
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 147 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGD 147 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCc
Confidence 999999999999999887664 346899999999999965422 11112222334456777777665543
No 83
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=4.6e-28 Score=164.08 Aligned_cols=146 Identities=23% Similarity=0.390 Sum_probs=114.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
++.+||+++|.+++|||||++++.++.+.. +.++.+.. ...+..+ ...+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 457999999999999999999999988764 56676644 4445555 478999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCccc---CCHHHHhhhcCCCCCCeeeccccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARK---VTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+|||++++.+|..+..|+..+.... ..+.|+++|+||+|+..... +........+...+++++++|+.++.
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGT 154 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCc
Confidence 9999999999999999988876643 26899999999999976532 22222223445567777777765543
No 84
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=1.9e-27 Score=164.54 Aligned_cols=143 Identities=20% Similarity=0.313 Sum_probs=113.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
.+.+||+++|++|||||||++++.++.+.. +.++.+.+ ...+..++ ..+.+||+||+++++.++..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 456899999999999999999999988754 56777664 45555666 88999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcCC------------CCCCeeeccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLCP------------GKWPILYGNL 154 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~ 154 (162)
+|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+ .++.++.++.+.. ..++++++|+
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 9999999999999999999887642 36899999999999965 4556666655432 3456666665
Q ss_pred ccc
Q 031263 155 CKN 157 (162)
Q Consensus 155 ~~~ 157 (162)
.++
T Consensus 174 ~~g 176 (190)
T 1m2o_B 174 VMR 176 (190)
T ss_dssp TTT
T ss_pred CcC
Confidence 544
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=5.9e-28 Score=166.63 Aligned_cols=144 Identities=24% Similarity=0.318 Sum_probs=113.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
++.+||+|+|.+++|||||++++.++.+...+.++.+.++. .+... .+.+.+||+||++++..++..+++.+|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 45799999999999999999999999988778888887653 23333 488999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHh-----hhcCCCCCCeeecccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARS-----TSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~ 157 (162)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.... ..++.. ..+....++++++|+.++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 169 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEK 169 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCC
Confidence 9999999999999999998886642 3689999999999996542 222222 122334556676665544
No 86
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=4.9e-28 Score=168.57 Aligned_cols=129 Identities=19% Similarity=0.300 Sum_probs=100.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
.+.+||+++|++|||||||++++.++.+.. +.++.+.+ ...+..++ ..+.+|||||+++++.++..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 456899999999999999999999887653 56676655 34555666 78999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhcC
Q 031263 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSLC 143 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~ 143 (162)
+|||++++++|..+..|+..+.... ..++|+++|+||+|+.+ .+..++.+..+.
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~ 152 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFG 152 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhC
Confidence 9999999999999999999887652 36899999999999965 456666665543
No 87
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=3.7e-28 Score=168.39 Aligned_cols=146 Identities=19% Similarity=0.368 Sum_probs=107.8
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
.++.+||+++|++++|||||++++.++.+.. +.+|.+. ....+...+ ..+.+||+||++++...+..+++.+|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTE--EEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCce--eEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 3567999999999999999999999888763 4566653 344454544 8899999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCccc---CCHHHHhhhcCCCCCCeeecccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARK---VTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
++|||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+... +........+....++++++|+.++
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g 175 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQG 175 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCc
Confidence 99999999999999999998876642 36899999999999965422 1111222233445677777666554
No 88
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.96 E-value=3.9e-27 Score=163.96 Aligned_cols=149 Identities=37% Similarity=0.674 Sum_probs=127.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
...+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 34699999999999999999999999988778888888888888889999999999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCK 156 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (162)
+|||++++.+++.+..|+..+......+.|+++++||+|+...+.+...+++..+...++.++.+|+..
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~ 151 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALD 151 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCC
Confidence 999999999999999999888776556889999999999987777887777777766677777754433
No 89
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=1.8e-27 Score=163.60 Aligned_cols=144 Identities=22% Similarity=0.353 Sum_probs=114.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
++.+||+++|.+++|||||++++.++. ...+.++.+.. ...+..++ ..+.+|||||++++...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999988 55577777744 44455554 78999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhh-----cCCCCCCeeeccccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTS-----LCPGKWPILYGNLCKNS 158 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~ 158 (162)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.... ++.... +...+++++++|+.++.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC--NAIQEALELDSIRSHHWRIQGCSAVTGE 165 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCH--HHHHHHhChhhccCCceEEEEeeCCCCC
Confidence 9999999999999999988886642 368999999999999765332 332222 23456777777665543
No 90
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=1.2e-28 Score=169.62 Aligned_cols=147 Identities=22% Similarity=0.462 Sum_probs=107.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC--CCCCCCccceeeEEEEEEEEE---CCeEEEEEEEeCCCccccccchhhhhcCCc
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAV---NDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 84 (162)
++||+++|++|||||||++++.+. .+...+.++++.++....+.. ++..+.+.+||++|++++..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 444556788888876665543 235678999999999999999999999999
Q ss_pred EEEEEEECCCh-HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCC---HHHHhhhcCCCCCC----eeeccccc
Q 031263 85 AAIIVYDITNQ-ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT---AEARSTSLCPGKWP----ILYGNLCK 156 (162)
Q Consensus 85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~s~~~ 156 (162)
++++|||++++ .++..+..|+..+.... ++.|+++||||+|+.+.+.+. .+..+..+...+++ ++++|+.+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999997 58999999999987763 578999999999997665543 23344555555665 56655544
Q ss_pred c
Q 031263 157 N 157 (162)
Q Consensus 157 ~ 157 (162)
+
T Consensus 161 ~ 161 (184)
T 2zej_A 161 E 161 (184)
T ss_dssp C
T ss_pred C
Confidence 3
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=2.9e-28 Score=167.16 Aligned_cols=146 Identities=22% Similarity=0.364 Sum_probs=112.2
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
...+.+||+++|.+++|||||++++.++.+ ..+.++.+... ..+..++ ..+.+||++|++++..++..+++.+|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 445679999999999999999999999888 44566666543 3444554 889999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhh-----hcCCCCCCeeeccccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARST-----SLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~ 158 (162)
+++|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.. ..++... .+...+++++++|+.++.
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 168 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGE 168 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC--CHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 999999999999999999988887642 3689999999999996532 2233322 223456677777665543
No 92
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.2e-27 Score=163.83 Aligned_cols=146 Identities=25% Similarity=0.341 Sum_probs=114.1
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCC-CCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ-FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 85 (162)
..+.+||+++|.+++|||||++++.+.. +...+.++.+. ....+..++ ..+.+||++|++++...+..+++.+|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3567999999999999999999999887 55556677763 345555554 789999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCCcCcccCCHHHHhhhc-----CCCCCCeeecccccc
Q 031263 86 AIIVYDITNQASFERAKKWVQELQAQGN---PNMVMALAGNKADLLDARKVTAEARSTSL-----CPGKWPILYGNLCKN 157 (162)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~ 157 (162)
+++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+. ...++.+..+ ...+++++++|+.++
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 9999999999999999999998877633 58999999999999653 3334443333 234667777766554
Q ss_pred c
Q 031263 158 S 158 (162)
Q Consensus 158 ~ 158 (162)
.
T Consensus 172 ~ 172 (190)
T 2h57_A 172 E 172 (190)
T ss_dssp B
T ss_pred c
Confidence 3
No 93
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=6.7e-28 Score=166.08 Aligned_cols=144 Identities=22% Similarity=0.369 Sum_probs=110.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
++.+||+++|.+++|||||++++.++.+. .+.++.+.+ ...+..++ ..+.+||+||++++..++..+++.+|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 56799999999999999999999988876 466676644 33444554 88999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhh-----cCCCCCCeeeccccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTS-----LCPGKWPILYGNLCKNS 158 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~ 158 (162)
+|||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+.. ..++.... +...+++++++|+.++.
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGE 163 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhhcCCCcEEEEccCCCCc
Confidence 9999999999999999999887753 3689999999999996532 23333222 34456777777665543
No 94
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.95 E-value=1.1e-26 Score=160.85 Aligned_cols=150 Identities=36% Similarity=0.654 Sum_probs=130.5
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
....++|+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+++...+..+++.++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 34569999999999999999999999998888889999988888888999889999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccc
Q 031263 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCK 156 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (162)
++|+|.++..+++.+..|+..+......+.|+++++||+|+.+.+.+...+++..+...++.++.+|+..
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald 175 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALD 175 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 9999999999999998999888776556889999999999987777777888877766677777744433
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.95 E-value=2e-27 Score=163.23 Aligned_cols=144 Identities=21% Similarity=0.340 Sum_probs=112.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
...+||+++|++|||||||++++.+..+. .+.++.+.. ...+..++ ..+.+||+||++.++..+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 56799999999999999999999988653 355666643 44555554 78999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCcccCCHHHHhh-----hcCCCCCCeeeccccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEARST-----SLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~ 158 (162)
+|||++++++|+.+..|+..+... ...+.|+++|+||+|+.+.+.. ++... .+....++++++|+.++.
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSCSALTGE 163 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH--HHHHHHhCchhccCCceEEEEccCCCCC
Confidence 999999999999999998887553 2368899999999999765432 22222 223456777777665543
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=7.2e-28 Score=166.10 Aligned_cols=145 Identities=25% Similarity=0.410 Sum_probs=112.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
++.+||+++|++++|||||++++.++.+.. +.++.+.. ...+..++ ..+.+|||||++++...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 568999999999999999999999887754 55666643 33444443 78999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCccc---CCHHHHhhhcCCCCCCeeecccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARK---VTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+|||+++++++..+..|+..+.... .++.|+++|+||+|+.+... +........+...+++++++|+.++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTG 168 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCc
Confidence 9999999999999999988876643 36899999999999966532 2222222334556677777766554
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.95 E-value=1.2e-27 Score=166.14 Aligned_cols=147 Identities=22% Similarity=0.285 Sum_probs=106.2
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEE--EEEE-CCeEEEEEEEeCCCccccccch---hhh
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ--TLAV-NDATVKFEIWDTAGQERYHSLA---PMY 79 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~D~~g~~~~~~~~---~~~ 79 (162)
..++.+||+++|+++||||||++++.+. +... ++.+.++... .... ++..+.+.+||++|+++|.... ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 4567899999999999999999988764 3322 3333332222 2223 2566889999999999987776 899
Q ss_pred hcCCcEEEEEEECCCh--HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC-------cccCCHHHHhhhcC----CCC
Q 031263 80 YRGAAAAIIVYDITNQ--ASFERAKKWVQELQAQGNPNMVMALAGNKADLLD-------ARKVTAEARSTSLC----PGK 146 (162)
Q Consensus 80 ~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-------~~~~~~~~~~~~~~----~~~ 146 (162)
+++++++++|||++++ +++..+..|+..+... .+++|+++|+||+|+.. .+.+..++.+..+. ..+
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 9999999999999997 7777778888887554 46899999999999754 34555555555544 556
Q ss_pred CCeeeccccc
Q 031263 147 WPILYGNLCK 156 (162)
Q Consensus 147 ~~~~~~s~~~ 156 (162)
++++++|+..
T Consensus 172 ~~~~e~Sa~~ 181 (196)
T 3llu_A 172 LSFYLTSIYD 181 (196)
T ss_dssp EEEEEECTTS
T ss_pred cceEEEEech
Confidence 6777776654
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=1.4e-27 Score=163.51 Aligned_cols=144 Identities=27% Similarity=0.416 Sum_probs=108.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
++.+||+++|++|+|||||++++.++.+ ..+.++.+.. ...+..++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5689999999999999999999998877 4456666644 34444554 88999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhhhc-----CCCCCCeeeccccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARSTSL-----CPGKWPILYGNLCKNS 158 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~ 158 (162)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++....+ ....++++++|+.++.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGE 165 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 9999999999999999988887653 4689999999999996542 333333222 3345667776665543
No 99
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=2.4e-26 Score=170.88 Aligned_cols=148 Identities=26% Similarity=0.405 Sum_probs=124.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
+..+||+++|.+++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3458999999999999999999999998877778877655 556678888899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCc------------ccCCHHHHhhhcCCCCC-Ceeecc
Q 031263 88 IVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEARSTSLCPGKW-PILYGN 153 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 153 (162)
+|||++++.+|..+. .|+..+.... +++|+++|+||+|+... +.+..+++..++...+. +++++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 999999999999987 7988888764 58999999999999653 56777777777665564 666666
Q ss_pred cccc
Q 031263 154 LCKN 157 (162)
Q Consensus 154 ~~~~ 157 (162)
+.++
T Consensus 311 a~~~ 314 (332)
T 2wkq_A 311 ALTQ 314 (332)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 5544
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=2.1e-29 Score=175.89 Aligned_cols=149 Identities=28% Similarity=0.435 Sum_probs=119.8
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
..+.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..+++.+|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 35679999999999999999999999888776777776544 44555677778899999999999999999999999999
Q ss_pred EEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCcc------------cCCHHHHhhhcCCCCC-Ceeec
Q 031263 87 IIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEARSTSLCPGKW-PILYG 152 (162)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 152 (162)
++|||++++.+++.+. .|+..+.... +++|+++|+||+|+...+ .+..++++..+...+. +++++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 9999999999999987 8888887653 488999999999997543 4555555556555555 56665
Q ss_pred ccccc
Q 031263 153 NLCKN 157 (162)
Q Consensus 153 s~~~~ 157 (162)
|+.++
T Consensus 185 SA~~g 189 (204)
T 3th5_A 185 SALTQ 189 (204)
Confidence 55443
No 101
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=3.7e-26 Score=169.06 Aligned_cols=145 Identities=18% Similarity=0.277 Sum_probs=112.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC---CCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccc-----ccchhhhh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI---EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-----HSLAPMYY 80 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~ 80 (162)
..+||+++|++|||||||+++++++... ..+.+|.+.++.. +.+++ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999987433 2456777766543 33433 588999999999988 78888999
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCCCcC--ccc----CCHHHHhhhcCCCC---CCe
Q 031263 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLD--ARK----VTAEARSTSLCPGK---WPI 149 (162)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 149 (162)
+++|++++|||++++++|+.+..|...+.... .+++|+++|+||+|+.. .+. +..++++..+...+ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999977755543321 46899999999999976 454 55566777776665 567
Q ss_pred eeccccc
Q 031263 150 LYGNLCK 156 (162)
Q Consensus 150 ~~~s~~~ 156 (162)
+++|+..
T Consensus 159 ~~tSa~~ 165 (307)
T 3r7w_A 159 FPTSIWD 165 (307)
T ss_dssp EECCTTS
T ss_pred EEeeecC
Confidence 7766554
No 102
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=1.4e-26 Score=171.12 Aligned_cols=139 Identities=16% Similarity=0.208 Sum_probs=104.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC---CCccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc---chhhhhcCCcE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIE---FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---LAPMYYRGAAA 85 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~ 85 (162)
||+++|+.|||||||++++.++.... .+.+|++.++.. + + ..+++++|||+|+++|+. .+..|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999888664432 256788776542 2 2 347899999999999974 46889999999
Q ss_pred EEEEEECCCh--HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc-------ccCCHHHHhhhcCC----CCCCeeec
Q 031263 86 AIIVYDITNQ--ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA-------RKVTAEARSTSLCP----GKWPILYG 152 (162)
Q Consensus 86 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 152 (162)
+++|||++++ +++..+..|+..+... .+++|++++|||+|+... |++..+++++.+.. .+.+++++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999998 3334444455555554 478999999999999754 56777777777764 46666666
Q ss_pred ccccc
Q 031263 153 NLCKN 157 (162)
Q Consensus 153 s~~~~ 157 (162)
|+ ++
T Consensus 155 SA-kd 158 (331)
T 3r7w_B 155 SI-FD 158 (331)
T ss_dssp CS-SS
T ss_pred cc-CC
Confidence 55 44
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.94 E-value=1.2e-25 Score=157.87 Aligned_cols=123 Identities=23% Similarity=0.292 Sum_probs=92.0
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCe-EEEEEEEeCCCcccccc-chhhhhcCC
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQERYHS-LAPMYYRGA 83 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-~~~~~~~~~ 83 (162)
.+.+.+||+++|++++|||||+++|.++.+...+.+ .+.++.. +..++. .+.+.+|||||++.+.. ++..+++.+
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 79 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA 79 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhC
Confidence 345679999999999999999999999988775543 4444433 445543 58899999999999987 788899999
Q ss_pred cEEEEEEECCChH-HHHHHHHH-HHHHHH--hCCCCCeEEEEEeCCCCcCcc
Q 031263 84 AAAIIVYDITNQA-SFERAKKW-VQELQA--QGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 84 ~~~i~v~d~~~~~-s~~~~~~~-~~~~~~--~~~~~~piiiv~nK~D~~~~~ 131 (162)
+++++|||+++.. ++.....| ...+.. ....++|+++|+||+|+...+
T Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred CEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 9999999999853 45555544 444433 224579999999999997654
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.6e-27 Score=170.98 Aligned_cols=151 Identities=19% Similarity=0.200 Sum_probs=107.9
Q ss_pred CcccceEEEEEcCC---------CCCHHHHHHHHHh---CCCCCCCccce-eeEEEEEEE--------------EECCeE
Q 031263 6 NKNINAKLVLLGDV---------GAGKSSLVLRFVK---GQFIEFQESTI-GAAFFSQTL--------------AVNDAT 58 (162)
Q Consensus 6 ~~~~~~ki~viG~~---------~~GKssli~~~~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~ 58 (162)
.....+||+++|.+ +||||||+++|.+ ..+...+.++. +.++..+.+ ..++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 44567999999999 9999999999999 55655555554 333222221 135667
Q ss_pred EEEEEEe-----------------------CCCccccccchhhhhc---------------------CCcEEEEEEECCC
Q 031263 59 VKFEIWD-----------------------TAGQERYHSLAPMYYR---------------------GAAAAIIVYDITN 94 (162)
Q Consensus 59 ~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~ 94 (162)
+.+.+|| ++|+++|..++..+++ ++|++++|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 6677777778887777 7999999999999
Q ss_pred h--HHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCC-CCCCeeeccccccc
Q 031263 95 Q--ASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEARSTSLCP-GKWPILYGNLCKNS 158 (162)
Q Consensus 95 ~--~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~ 158 (162)
+ .+|+.+..|+..+... ...++|+++|+||+|+...+.+ ++.+.++.. .+++++++|+.++.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~ 240 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNV 240 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTB
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCC
Confidence 8 9999999999998765 3468999999999999766655 344444443 36777776665543
No 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=167.64 Aligned_cols=146 Identities=21% Similarity=0.392 Sum_probs=106.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
++.+||+|+|.+++|||||+++|.++.+.. ..+|.+..+ ..+...+ +.+.+|||||++.+..++..+++.+|+++
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~-~~pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEE-EEEETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCC-cccccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 356899999999999999999999988764 335666443 3344444 78999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCCcCcccCCH---HHHhhhcCCCCCCeeeccccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTA---EARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+|||++++.+|..+..|+..+... ..+++|+++|+||+|+.+...... ......+....++++++|+.++.
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~ 312 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGD 312 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTB
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCc
Confidence 999999999999999888777554 236899999999999976443211 11222233456677777765543
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=2.7e-25 Score=173.91 Aligned_cols=144 Identities=24% Similarity=0.422 Sum_probs=112.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
...+||+++|.++||||||+++|+++.+.. +.+|.+.++. .+.. ..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE--EEES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE--EEEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 456999999999999999999999998654 5677775543 3333 3478999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCcCcccCCHHHHhh-----hcCCCCCCeeeccccccc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEARST-----SLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~ 158 (162)
+|||++++++|..+..|+..+.... ..++|++||+||+|+.+... ..+... .+....|+++++|+.++.
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 469 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQPSCATSGD 469 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC--HHHHHHHTTCTTCCSSCEEEEECBTTTTB
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC--HHHHHHHhchhhhhcCCeEEEEEECCCCC
Confidence 9999999999999999988886643 36899999999999965432 222222 223456667777665543
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.92 E-value=4.7e-25 Score=149.16 Aligned_cols=140 Identities=16% Similarity=0.082 Sum_probs=97.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccc------cchhhhhc--
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH------SLAPMYYR-- 81 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~-- 81 (162)
.++|+++|++|+|||||++++.+..+.....++.+.+.....+..++ ..+.+|||||+..+. .+...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999999999998776554445544444455555555 689999999998775 33455664
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 82 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+++++++|+|+++.++ ...|+..+... +.|+++|+||+|+...+.+.. +.+......+++++++|+.++.
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~ 150 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKM 150 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTB
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCC
Confidence 8999999999998543 45577776553 689999999999965555442 2233333345677777765543
No 108
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.92 E-value=7.6e-25 Score=149.18 Aligned_cols=115 Identities=21% Similarity=0.259 Sum_probs=92.0
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 86 (162)
.++.++|+++|.+++|||||++++.+..+...+.++.+.+.....+..++ ..+.+|||||++.+..++..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 45689999999999999999999999988876666666555555566666 4678999999999999999999999999
Q ss_pred EEEEECCC---hHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 87 IIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 87 i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
++|||+++ +.+++.+ ......++|+++|+||+|+...
T Consensus 83 i~v~d~~~~~~~~~~~~l-------~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEAI-------NHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp EEEEETTCCCCHHHHHHH-------HHHGGGSCCEEEEEETTTSSCS
T ss_pred EEEEECCCCCcHHHHHHH-------HHHHhCCCCEEEEEECccCCcC
Confidence 99999998 4443322 2222357899999999999653
No 109
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=5.5e-26 Score=159.97 Aligned_cols=119 Identities=18% Similarity=0.258 Sum_probs=96.9
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCC---CCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC-
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE---FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG- 82 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~- 82 (162)
....++|+++|++|+|||||++++.+..+.. .+.++.+.+ .....+.+||+||++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT---------GGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE---------eeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 4567999999999999999999999988654 233433322 144678999999999999888888877
Q ss_pred ---CcEEEEEEECC-ChHHHHHHHHHHHHHHHh----CCCCCeEEEEEeCCCCcCcccCC
Q 031263 83 ---AAAAIIVYDIT-NQASFERAKKWVQELQAQ----GNPNMVMALAGNKADLLDARKVT 134 (162)
Q Consensus 83 ---~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~piiiv~nK~D~~~~~~~~ 134 (162)
++++++|+|++ ++++|..+..|+..+... ...++|+++|+||+|+...+.+.
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence 89999999999 888999999998887664 34689999999999998766544
No 110
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.91 E-value=4.8e-25 Score=173.89 Aligned_cols=148 Identities=18% Similarity=0.240 Sum_probs=112.3
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEE------E--EECCeEEEEEEEeCCCccccccchhh
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQT------L--AVNDATVKFEIWDTAGQERYHSLAPM 78 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~D~~g~~~~~~~~~~ 78 (162)
....+||+++|.++||||||++++.++.+...+.++++.++..+. + ..++....+.+||+||++.+...+..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 346799999999999999999999999988878888888766542 1 12334688999999999999999999
Q ss_pred hhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+++.++++++|||+++. +.+..|+..+.... ++.|+++|+||+|+...+.+..++.+..+...+++++++|+.++.
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 99999999999999865 55678999888874 578999999999998888888888888888778788887766553
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.91 E-value=4.3e-24 Score=151.51 Aligned_cols=147 Identities=15% Similarity=0.102 Sum_probs=96.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcc------cc---ccchhh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE------RY---HSLAPM 78 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~------~~---~~~~~~ 78 (162)
...+||+|+|.+|||||||+++|++..+.....+..+.+.........+ ..+.+|||||+. .. ......
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4679999999999999999999999876532222222233333333343 789999999983 21 112234
Q ss_pred hhcCCcEEEEEEECCChHHHHH--HHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHH---HHhhhcCCCC--CCeee
Q 031263 79 YYRGAAAAIIVYDITNQASFER--AKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE---ARSTSLCPGK--WPILY 151 (162)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~ 151 (162)
++..+|++++|||++++.+|.. ...|+..+... .++.|+++|+||+|+...+.+... ..+..+...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 5778899999999999877652 33566666544 358899999999999877777654 2333333333 67777
Q ss_pred cccccc
Q 031263 152 GNLCKN 157 (162)
Q Consensus 152 ~s~~~~ 157 (162)
+|+.++
T Consensus 184 ~SA~~g 189 (228)
T 2qu8_A 184 FSTLTG 189 (228)
T ss_dssp CCTTTC
T ss_pred EecccC
Confidence 666554
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=4e-24 Score=146.95 Aligned_cols=140 Identities=17% Similarity=0.101 Sum_probs=102.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccc------cchhhhhc-
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH------SLAPMYYR- 81 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~- 81 (162)
+.+||+++|++|||||||++++.+..+.....++.+.+.....+..++ ..+.+|||||+..+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 568999999999999999999998766554556666666666666665 789999999998774 34555664
Q ss_pred -CCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 82 -GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 82 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
.++++++|+|.++ ++....|+..+.. .+.|+++|+||+|+...+.+. .+.+......+++++++|+..+
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~ 153 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKK 153 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGT
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCC
Confidence 4999999999875 5566778777654 478999999999996655544 2233333334567777776554
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.91 E-value=5.8e-24 Score=144.84 Aligned_cols=140 Identities=17% Similarity=0.144 Sum_probs=98.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APM 78 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~ 78 (162)
++..||+++|.+|+|||||++++.+.... ....++.+.++....+..++ ..+.+|||||+.++... ...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHH
Confidence 34689999999999999999999987643 22234444455566666776 45899999998653211 123
Q ss_pred hhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+++.+|++++|||++++.+++ ...|+..+......++|+++|+||+|+.+.. ........++++++|+.++
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-------~~~~~~~~~~~~~~SA~~g 150 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGET-------LGMSEVNGHALIRLSARTG 150 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCC-------CEEEEETTEEEEECCTTTC
T ss_pred HHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcch-------hhhhhccCCceEEEeCCCC
Confidence 578999999999999988776 4578887777655679999999999985421 1122223556666665544
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.90 E-value=9.8e-24 Score=145.78 Aligned_cols=143 Identities=16% Similarity=0.188 Sum_probs=92.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCC----------ccccccchh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG----------QERYHSLAP 77 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~ 77 (162)
...+||+++|.+|+|||||++++++..+...+.++.+.+........++ ++.+||||| ++.+..++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 4579999999999999999999999876554555555443333333443 589999999 677777778
Q ss_pred hhhcCC---cEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCH--HHHhhhcC-CCCCCeee
Q 031263 78 MYYRGA---AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA--EARSTSLC-PGKWPILY 151 (162)
Q Consensus 78 ~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~--~~~~~~~~-~~~~~~~~ 151 (162)
.+++.+ +++++|+|++++.++.... ++..+.. .+.|+++|+||+|+...+.+.. ++.+..+. ...+++++
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL 173 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence 887777 9999999999876665532 2222222 4789999999999977665543 33333233 34556776
Q ss_pred cccccc
Q 031263 152 GNLCKN 157 (162)
Q Consensus 152 ~s~~~~ 157 (162)
+|+..+
T Consensus 174 ~Sa~~~ 179 (195)
T 1svi_A 174 FSSETK 179 (195)
T ss_dssp CCTTTC
T ss_pred EEccCC
Confidence 665544
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.90 E-value=4.8e-23 Score=137.95 Aligned_cols=136 Identities=16% Similarity=0.088 Sum_probs=88.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc-------cccchhhhhcC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-------YHSLAPMYYRG 82 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~ 82 (162)
.||+++|.+|+|||||++++.+..+. ....++.+.+.....+..++ ..+.+||+||+.. +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999998754 22333333444455555666 4789999999876 34455667899
Q ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCC-Ceeecccccc
Q 031263 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKW-PILYGNLCKN 157 (162)
Q Consensus 83 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 157 (162)
+|++++|+|++++.+. ...|+..+... .+.|+++|+||+|+.+.. ++.+... ..+. +++++|+..+
T Consensus 80 ~~~~i~v~d~~~~~~~--~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~ 146 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQ--ADYEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHA 146 (161)
T ss_dssp CSEEEEEEESSSCCCH--HHHHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCcccH--hHHHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccC
Confidence 9999999999985332 22333333332 468999999999996542 2333333 3445 5666665443
No 116
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.5e-24 Score=145.97 Aligned_cols=118 Identities=16% Similarity=0.244 Sum_probs=91.9
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCC---CCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC-
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE---FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG- 82 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~- 82 (162)
....++|+++|.+|+|||||++++.+..+.. ...++.+ .+.....+.+||+||+..+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 3567899999999999999999999987654 1222222 12234678999999999998888888776
Q ss_pred ---CcEEEEEEECC-ChHHHHHHHHHHHHHHHh----CCCCCeEEEEEeCCCCcCcccC
Q 031263 83 ---AAAAIIVYDIT-NQASFERAKKWVQELQAQ----GNPNMVMALAGNKADLLDARKV 133 (162)
Q Consensus 83 ---~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~piiiv~nK~D~~~~~~~ 133 (162)
+|++++|||++ ++.++..+..|+..+... ..+++|+++|+||+|+...+.+
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 89999999999 899999999888887654 3368999999999999776554
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.89 E-value=3.3e-23 Score=149.74 Aligned_cols=143 Identities=15% Similarity=0.079 Sum_probs=102.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc------hhhhh-
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------APMYY- 80 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~- 80 (162)
.+.+||+++|.+|+|||||+|+|.+..+.....+..+.+.....+...+ ..+.+|||||+..+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4579999999999999999999999776544455555555555554444 78999999999877643 25555
Q ss_pred -cCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccccc
Q 031263 81 -RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNSN 159 (162)
Q Consensus 81 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (162)
..+|++++|+|+++.++. ..|...+... ++|+++|+||+|+...+.+... .+......+++++++|+.++.+
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~pvilv~NK~Dl~~~~~i~~~-~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILEM---EKKVILAMTAIDEAKKTGMKID-RYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCCEEEEEECHHHHHHTTCCBC-HHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCCEEEEEECcCCCCccchHHH-HHHHHHHcCCCEEEEEeeCCcC
Confidence 589999999999986543 3465555443 7899999999999765555432 3333334467888887766543
No 118
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.88 E-value=1.3e-23 Score=144.48 Aligned_cols=115 Identities=18% Similarity=0.259 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCC-----------ccccccchhhh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG-----------QERYHSLAPMY 79 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~ 79 (162)
+||+++|.+|+|||||++++.+..+...+.++.+... ...... .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6999999999999999999999988766666554332 222222 689999999 66777777888
Q ss_pred hcC-CcEEEEEEECCChHHHHHH-HHHHHH--------H-HHhCCCCCeEEEEEeCCCCcCcc
Q 031263 80 YRG-AAAAIIVYDITNQASFERA-KKWVQE--------L-QAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 80 ~~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
++. ++++++++++.|..++..+ ..|... + ......++|+++|+||+|+...+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 887 8888888888888888876 567652 2 22223578999999999997655
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.88 E-value=5.7e-23 Score=148.36 Aligned_cols=139 Identities=14% Similarity=0.062 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc----------chhhhh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS----------LAPMYY 80 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~ 80 (162)
.+|+++|.+|+|||||+|++.+........++.+.+.....+..++ ..+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999999876555556666666677776666 4889999999877653 455666
Q ss_pred --cCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 81 --RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 81 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
..+|++++|+|+++.++...+..|+. ..+.|+++|+||+|+...+.+.... .......+++++++|+.++.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~~~~-~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGISIDT-EKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCEECH-HHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcHHHH-HHHHHHcCCCEEEEECCCCC
Confidence 88999999999999766554444322 2378999999999986554432221 11222235788887776654
No 120
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.88 E-value=2.3e-22 Score=148.79 Aligned_cols=149 Identities=13% Similarity=0.045 Sum_probs=102.5
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-ccceeeEEEEEEEEECCeEEEEEEEeCCCccccc----------
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH---------- 73 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------- 73 (162)
+.+.+.-.|+++|.+|||||||+|++++.++.... .+..+.+......... ...++.+|||||+....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 34566789999999999999999999998876322 2222222222233333 14789999999985543
Q ss_pred cchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCC--CCCeee
Q 031263 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPG--KWPILY 151 (162)
Q Consensus 74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~ 151 (162)
.....+++.+|++++|+|++++.++.....|+..+.. .+.|+++|+||+|+...+....+..+...... ..+++.
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 5566778899999999999998888887777777765 36899999999999744444333333332222 356677
Q ss_pred cccccc
Q 031263 152 GNLCKN 157 (162)
Q Consensus 152 ~s~~~~ 157 (162)
+|+.++
T Consensus 161 vSA~~g 166 (308)
T 3iev_A 161 ISALKG 166 (308)
T ss_dssp CBTTTT
T ss_pred EeCCCC
Confidence 665544
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.88 E-value=7.7e-23 Score=149.01 Aligned_cols=141 Identities=15% Similarity=0.096 Sum_probs=98.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc----------chhh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS----------LAPM 78 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~ 78 (162)
++++|+++|.+|+|||||+|++++..+.....++.+.+.....+...+ ..+.+|||||+..+.. +...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 468999999999999999999999876544556666666666665555 5678999999877662 2233
Q ss_pred hh--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccc
Q 031263 79 YY--RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCK 156 (162)
Q Consensus 79 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (162)
++ +.+|++++|+|+++.++...+..| +... ++|+++|+||+|+...+.+... .+......+++++++|+.+
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNIRIE-IDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTEEEC-HHHHHHHHTSCEEECCCGG
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhHHHH-HHHHHHhcCCCEEEEEcCC
Confidence 33 689999999999986655444333 4333 6899999999998654433211 1222222357788877765
Q ss_pred cc
Q 031263 157 NS 158 (162)
Q Consensus 157 ~~ 158 (162)
+.
T Consensus 153 g~ 154 (274)
T 3i8s_A 153 GR 154 (274)
T ss_dssp GH
T ss_pred CC
Confidence 53
No 122
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.88 E-value=3.3e-22 Score=137.81 Aligned_cols=142 Identities=18% Similarity=0.260 Sum_probs=96.0
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCC----------ccccccch
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG----------QERYHSLA 76 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~ 76 (162)
....+||+++|.+|+|||||++++++..+.. ..++.+.+........+. ++.+||||| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence 3567899999999999999999999987443 334444333233222333 578999999 66677777
Q ss_pred hhhhcCC---cEEEEEEECCChH--HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCccc--CCHHHHhhhcCC-CCCC
Q 031263 77 PMYYRGA---AAAIIVYDITNQA--SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEARSTSLCP-GKWP 148 (162)
Q Consensus 77 ~~~~~~~---~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~~~~~~~~~~~-~~~~ 148 (162)
..+++.+ +++++|+|++++. ....+..|+... +.|+++|+||+|+..... ...++.+..+.. ..++
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT 169 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence 7777766 9999999998753 333334454332 689999999999965432 333444455544 4467
Q ss_pred eeeccccccc
Q 031263 149 ILYGNLCKNS 158 (162)
Q Consensus 149 ~~~~s~~~~~ 158 (162)
++++|+..+.
T Consensus 170 ~~~~Sa~~~~ 179 (195)
T 3pqc_A 170 IIPTSSVTGE 179 (195)
T ss_dssp EEECCTTTCT
T ss_pred eEEEecCCCC
Confidence 7777765543
No 123
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.87 E-value=7.6e-23 Score=148.81 Aligned_cols=140 Identities=19% Similarity=0.138 Sum_probs=97.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccc------cchhhhhc-
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH------SLAPMYYR- 81 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~- 81 (162)
..+||+++|++|||||||+|+|.+........+..+.+ .+...++. ...+.+|||||+..+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~--~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE--RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS--CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE--EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 35899999999999999999999876443334433333 23333444 5679999999998775 45566665
Q ss_pred -CCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 82 -GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 82 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
.+|++++|+|+++.++. ..|...+.. .+.|+++++||+|+...+.+.. +........+++++++|+.++.
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 149 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKKI-NVDKLSYHLGVPVVATSALKQT 149 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBTTTTB
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcHH-HHHHHHHHcCCCEEEEEccCCC
Confidence 59999999999986543 456655554 3789999999999965554442 2233333346788887766553
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.87 E-value=2.1e-21 Score=143.08 Aligned_cols=120 Identities=16% Similarity=0.184 Sum_probs=84.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCC-CccceeeEEEEEEEEECCeEEEEEEEeCCCccc--------cccchhh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-QESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPM 78 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~ 78 (162)
-+..+|+++|.+|+|||||+|++++.++... ..+..+.+......... ..++.+|||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 4567899999999999999999999887532 22222222222222223 47899999999765 3445567
Q ss_pred hhcCCcEEEEEEECCChHHHHHHHHHH-HHHHHhCCCCCeEEEEEeCCCCcCccc
Q 031263 79 YYRGAAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDARK 132 (162)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~piiiv~nK~D~~~~~~ 132 (162)
+++.+|++++|+|++++.+. ...|+ ..+... .++.|+++|+||+|+...+.
T Consensus 83 ~l~~ad~il~VvD~~~~~~~--~~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~ 134 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTP--EDELVARALKPL-VGKVPILLVGNKLDAAKYPE 134 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCH--HHHHHHHHHGGG-TTTSCEEEEEECGGGCSSHH
T ss_pred HHhcCCEEEEEEECCCCCCh--HHHHHHHHHHhh-cCCCCEEEEEECcccCCchH
Confidence 78999999999999986433 34555 344333 25789999999999976543
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.86 E-value=1e-21 Score=142.76 Aligned_cols=142 Identities=16% Similarity=0.098 Sum_probs=101.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc------chhhhh--
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LAPMYY-- 80 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~-- 80 (162)
+.+||+++|++|+|||||+|++.+..+.....++.+.+.....+...+ ..+.+|||||+..+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 358999999999999999999999876555566666666666666666 5689999999887765 555666
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccccc
Q 031263 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
..+|++++|+|+++.+ ....|...+... ...|+++|+||+|+...+.+... .+......+++++++|+.++.
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~ 151 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGE 151 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTB
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCC
Confidence 6799999999999853 334455555444 23899999999998654443322 222223335778887776554
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.85 E-value=2.9e-21 Score=150.06 Aligned_cols=142 Identities=15% Similarity=0.109 Sum_probs=81.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccch--------hhh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA--------PMY 79 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 79 (162)
..+||+++|.+|+|||||+|+|.+.+.. ....+..+.+.....+..++ ..+.+|||||+.++...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 4589999999999999999999987543 33344555555556666766 679999999987765433 336
Q ss_pred hcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
++.+|++++|+|++++.+++.+..+...+... .+.|+++|+||+|+........++.... ..++++++|+.++
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~---~~~~~i~vSAktg 382 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADALIRAIADG---TGTEVIGISALNG 382 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHH---HTSCEEECBTTTT
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccchhHHHHHhc---CCCceEEEEECCC
Confidence 78899999999999988776444333333333 2789999999999976655432222221 1245666655443
No 127
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.85 E-value=4e-22 Score=140.54 Aligned_cols=146 Identities=18% Similarity=0.234 Sum_probs=90.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEEC-CeEEEEEEEeCCCc----------cccccch
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQ----------ERYHSLA 76 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~----------~~~~~~~ 76 (162)
...+||+++|.+|+|||||+|++++...........+.+......... .....+.+|||||. +.+..+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 457899999999999999999999987321122222222222222233 33467899999994 3445555
Q ss_pred hhhhcC---CcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCH--HHHhhhcC-------C
Q 031263 77 PMYYRG---AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA--EARSTSLC-------P 144 (162)
Q Consensus 77 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~--~~~~~~~~-------~ 144 (162)
..+++. +|++++|+|++++.+ .....|+..+.. .+.|+++|+||+|+...+.+.. ++.+..+. .
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~ 182 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA 182 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence 566655 778999999987533 222344444433 4689999999999976544321 11222222 2
Q ss_pred CCCCeeecccccc
Q 031263 145 GKWPILYGNLCKN 157 (162)
Q Consensus 145 ~~~~~~~~s~~~~ 157 (162)
..++++++|+.++
T Consensus 183 ~~~~~~~~SA~~g 195 (223)
T 4dhe_A 183 GKLTVQLFSALKR 195 (223)
T ss_dssp SCEEEEEEBTTTT
T ss_pred CCCeEEEeecCCC
Confidence 4566777666554
No 128
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=2.5e-21 Score=149.35 Aligned_cols=144 Identities=19% Similarity=0.191 Sum_probs=96.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCc----------cccccch
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ----------ERYHSLA 76 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~ 76 (162)
...+||+++|.+|||||||+|++++.... ....++.+.+.....+..++ ..+.+|||||+ +.|..+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHH
Confidence 35699999999999999999999998764 23334444454455556666 45899999997 4444333
Q ss_pred h-hhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHh----hhcC-CCCCCee
Q 031263 77 P-MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARS----TSLC-PGKWPIL 150 (162)
Q Consensus 77 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~----~~~~-~~~~~~~ 150 (162)
. .+++.+|++++|+|++++.+++.. .|+..+.. .+.|+++|+||+|+.+.+....++.. ..+. ....+++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 3 467889999999999998777664 57666654 46899999999999876655433332 2222 2244666
Q ss_pred ecccccc
Q 031263 151 YGNLCKN 157 (162)
Q Consensus 151 ~~s~~~~ 157 (162)
++|+.++
T Consensus 327 ~~SA~tg 333 (436)
T 2hjg_A 327 FMSALTK 333 (436)
T ss_dssp ECCTTTC
T ss_pred EEecccC
Confidence 6665544
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.84 E-value=6.2e-21 Score=146.10 Aligned_cols=142 Identities=16% Similarity=0.153 Sum_probs=96.6
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc-------hhh
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-------APM 78 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~ 78 (162)
....+||+++|..++|||||++++++..+. ....+..+.+.....+...+. ..+.+|||||+..+..+ ...
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence 456799999999999999999999988764 222333344444555555543 27899999999877654 345
Q ss_pred hhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+++.+|++++|+|++..+ ....|+..+... ++|+++|+||+|+...+.. +..+......+++++++|+.++
T Consensus 110 ~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg 180 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK 180 (423)
T ss_dssp HHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred HHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence 788899999999994433 345677766655 7899999999999776654 4455555566777777766554
No 130
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.84 E-value=3.6e-20 Score=132.23 Aligned_cols=124 Identities=17% Similarity=0.210 Sum_probs=78.1
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCcc--ceeeEEEEEEEEECCeEEEEEEEeCCCcc-----------ccc
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES--TIGAAFFSQTLAVNDATVKFEIWDTAGQE-----------RYH 73 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----------~~~ 73 (162)
....+||+++|.+|+|||||+|++++..+.....+ +.+.+........++ ..+.+|||||.. .+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 34569999999999999999999999887655444 333334444555555 578999999942 344
Q ss_pred cchhhhhcCCcEEEEEEECCChHH--HHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCC
Q 031263 74 SLAPMYYRGAAAAIIVYDITNQAS--FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT 134 (162)
Q Consensus 74 ~~~~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~ 134 (162)
.....++++++++++|+|+++... ...+..+...+... ...|+++|+||+|+...+.+.
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHH
Confidence 444555678899999999875322 22222332222222 245899999999987655444
No 131
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.83 E-value=7.1e-20 Score=132.49 Aligned_cols=124 Identities=16% Similarity=0.121 Sum_probs=87.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCC-CCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhc------
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR------ 81 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~------ 81 (162)
+.+||+++|..|+|||||+|++++..... ...+..+.......+..++ ..+.+|||||+.++......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 57999999999999999999999987532 1222222223334444555 68999999999887766555543
Q ss_pred ---CCcEEEEEEECCChHHHHHH-HHHHHHHHHhCCCC--CeEEEEEeCCCCcCcccCCH
Q 031263 82 ---GAAAAIIVYDITNQASFERA-KKWVQELQAQGNPN--MVMALAGNKADLLDARKVTA 135 (162)
Q Consensus 82 ---~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~piiiv~nK~D~~~~~~~~~ 135 (162)
.++++++|++++... +... ..|+..+......+ .|+++|+||+|+...+....
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 171 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSY 171 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCH
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccH
Confidence 689999999987644 4333 46777776653333 48999999999965544443
No 132
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.83 E-value=5.6e-20 Score=136.35 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=70.4
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEECC----------ChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCC
Q 031263 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT----------NQASFERAKKWVQELQAQG-NPNMVMALAGNKAD 126 (162)
Q Consensus 58 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D 126 (162)
.+.+++||++|++.++.+|..++++++++|+|||++ +..+|.+...|+..+.... ..++|++|++||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 489999999999999999999999999999999665 6678888888888876643 36899999999999
Q ss_pred CcCcc----------------cCCHHHHhhh
Q 031263 127 LLDAR----------------KVTAEARSTS 141 (162)
Q Consensus 127 ~~~~~----------------~~~~~~~~~~ 141 (162)
+.+.+ .++.+++..+
T Consensus 246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~f 276 (327)
T 3ohm_A 246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREF 276 (327)
T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHH
T ss_pred hhhhhhccchHhhhchhccCCCCCHHHHHHH
Confidence 96544 4667777766
No 133
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.83 E-value=5.6e-20 Score=137.99 Aligned_cols=106 Identities=14% Similarity=0.209 Sum_probs=81.9
Q ss_pred EEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCC----------hHHHHHHHHHHHHHHHhC-CCCCeE
Q 031263 50 QTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQAQG-NPNMVM 118 (162)
Q Consensus 50 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~pi 118 (162)
..+.++ .+.+.+||++|++.++..|..++++++++|+|||+++ ..+|.+...|+..+.... ..++|+
T Consensus 186 ~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 186 THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence 334444 4889999999999999999999999999999999999 567999889998887642 368999
Q ss_pred EEEEeCCCCcCcc---------------cCCHHHHhhhcC-----------CCCCCeeecccccc
Q 031263 119 ALAGNKADLLDAR---------------KVTAEARSTSLC-----------PGKWPILYGNLCKN 157 (162)
Q Consensus 119 iiv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~ 157 (162)
+|++||+|+...+ .++.+++..++. ...+.++++|+..+
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~ 328 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 328 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH
T ss_pred EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc
Confidence 9999999985332 356666666553 34566666555443
No 134
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=5.8e-21 Score=144.00 Aligned_cols=146 Identities=14% Similarity=0.204 Sum_probs=86.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCC-CC--------ccceeeEEEEEEEEECCeEEEEEEEeCCCc-------ccc
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQ--------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQ-------ERY 72 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~~~ 72 (162)
..++|+++|.+|+|||||++++.+..... .+ .++.+.+.....+..++....+++|||||. +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 45899999999999999999987754332 11 145555544444445566778999999998 666
Q ss_pred ccchh-------hhhcCCcEE-----------EEEEECCC-hHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCccc
Q 031263 73 HSLAP-------MYYRGAAAA-----------IIVYDITN-QASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARK 132 (162)
Q Consensus 73 ~~~~~-------~~~~~~~~~-----------i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~ 132 (162)
..++. .+++.++++ +++|++++ ..++..+. .|+..+ ..++|+++|+||+|+...+.
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~e 191 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLKE 191 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHHH
Confidence 66665 555544332 35555554 44555554 454443 36789999999999987766
Q ss_pred CCH--HHHhhhcCCCCCCeeeccccccc
Q 031263 133 VTA--EARSTSLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 133 ~~~--~~~~~~~~~~~~~~~~~s~~~~~ 158 (162)
+.. +++...+...+++++++|+..+.
T Consensus 192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~ 219 (361)
T 2qag_A 192 RERLKKRILDEIEEHNIKIYHLPDAESD 219 (361)
T ss_dssp HHHHHHHHHHHTTCC-CCSCCCC-----
T ss_pred HHHHHHHHHHHHHHCCCCEEeCCCcCCC
Confidence 654 56667777788888888876654
No 135
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=7.1e-21 Score=147.54 Aligned_cols=144 Identities=21% Similarity=0.216 Sum_probs=97.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCC----------ccccccch
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAG----------QERYHSLA 76 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~ 76 (162)
...+||+++|.+++|||||++++++.... ....++.+.+.....+..++ ..+.+||||| ++.|..+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 45799999999999999999999977532 22334444443344555566 4789999999 56666665
Q ss_pred h-hhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCC----C-CCCee
Q 031263 77 P-MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCP----G-KWPIL 150 (162)
Q Consensus 77 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~----~-~~~~~ 150 (162)
. .+++.+|++++|+|++++.+ +....|...+.. .+.|+++|+||+|+.+.+.+..++.++.+.. . ..+++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 5 36788999999999998533 333455555544 3689999999999987776665555444332 2 34666
Q ss_pred ecccccc
Q 031263 151 YGNLCKN 157 (162)
Q Consensus 151 ~~s~~~~ 157 (162)
++|+.++
T Consensus 347 ~~SA~~g 353 (456)
T 4dcu_A 347 FMSALTK 353 (456)
T ss_dssp ECCTTTC
T ss_pred EEcCCCC
Confidence 6665544
No 136
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.82 E-value=1.4e-19 Score=136.30 Aligned_cols=145 Identities=13% Similarity=0.085 Sum_probs=99.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc---------chhh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---------LAPM 78 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~ 78 (162)
...++|+++|.+|+|||||++++.+........+..+.......+...+ ..+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4568999999999999999999998764322222222222233333333 6789999999754321 1123
Q ss_pred hhcCCcEEEEEEECCChH--HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccc
Q 031263 79 YYRGAAAAIIVYDITNQA--SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCK 156 (162)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (162)
+...+|++++|+|++++. +++....|+..+.... .+.|+++|+||+|+.....+ ++....+...+++++++|+.+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence 345689999999999876 6777888998887754 37899999999999765443 333334444566777777654
Q ss_pred c
Q 031263 157 N 157 (162)
Q Consensus 157 ~ 157 (162)
+
T Consensus 320 g 320 (357)
T 2e87_A 320 G 320 (357)
T ss_dssp T
T ss_pred C
Confidence 4
No 137
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.82 E-value=3.3e-20 Score=133.20 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=75.4
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceee--EEEEEEEEECCeEEEEEEEeCCCc--------cccccch
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGA--AFFSQTLAVNDATVKFEIWDTAGQ--------ERYHSLA 76 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~ 76 (162)
....+||+++|.+|+|||||+|++++........++.+. .........++ ..+.+|||||. +++....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 356799999999999999999999998876543333222 22233334444 67899999996 3333323
Q ss_pred hhhh----cCCcEEEEEEECCChHH-HHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 77 PMYY----RGAAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 77 ~~~~----~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
...+ +++|++++|+|+++... ...+..|+..+......+.|+++++||+|+.+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 3333 89999999999985211 11122333333222223789999999999965
No 138
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.82 E-value=4.1e-19 Score=135.72 Aligned_cols=150 Identities=13% Similarity=0.046 Sum_probs=103.2
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEE---------EE-------EE---CCeEEEEEEEeC
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ---------TL-------AV---NDATVKFEIWDT 66 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~---------~~-------~~---~~~~~~~~~~D~ 66 (162)
.+++.+||+++|.+++|||||+++|++......... ...+.... .. .. ......+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGY-AETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEE-EEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCc-cccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 456789999999999999999999998644321100 00000000 00 00 112378999999
Q ss_pred CCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCC--HHHHhhhcC-
Q 031263 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--AEARSTSLC- 143 (162)
Q Consensus 67 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~--~~~~~~~~~- 143 (162)
||+++|.......+..+|++++|+|++++.++.+..+|+..+.... ..|+++++||+|+.+..... .++.+..+.
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999877778888887776664 35899999999997654322 122333332
Q ss_pred --CCCCCeeeccccccc
Q 031263 144 --PGKWPILYGNLCKNS 158 (162)
Q Consensus 144 --~~~~~~~~~s~~~~~ 158 (162)
...++++++|+.++.
T Consensus 161 ~~~~~~~ii~vSA~~g~ 177 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKI 177 (403)
T ss_dssp STTTTCCEEECBTTTTB
T ss_pred hCCCCCEEEEEECCCCc
Confidence 235678887776553
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=7.2e-20 Score=141.29 Aligned_cols=138 Identities=18% Similarity=0.155 Sum_probs=85.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc---------cccchhhhh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER---------YHSLAPMYY 80 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~ 80 (162)
.+|+++|.+|||||||+|+|.+.... ....+..+.+.....+..++ ..+.+|||||... +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987653 23344454455566666666 4689999999654 234556779
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHH-hhhcCCCCC-Ceeeccccccc
Q 031263 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEAR-STSLCPGKW-PILYGNLCKNS 158 (162)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~~~ 158 (162)
+.+|++++|+|++++.+.. ..|+..+.+. .++|+++|+||+|+.+.. ..+. ..+. ..++ +++++|+.++.
T Consensus 80 ~~ad~il~V~D~~~~~~~~--d~~i~~~l~~--~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~g~ 151 (439)
T 1mky_A 80 READLVLFVVDGKRGITKE--DESLADFLRK--STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEHNI 151 (439)
T ss_dssp TTCSEEEEEEETTTCCCHH--HHHHHHHHHH--HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTTTB
T ss_pred HhCCEEEEEEECCCCCCHH--HHHHHHHHHH--cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccCCC
Confidence 9999999999998754332 2233333222 267999999999985321 1222 2222 3344 56666655443
No 140
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.82 E-value=3.4e-20 Score=144.65 Aligned_cols=147 Identities=21% Similarity=0.172 Sum_probs=91.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCC--C-----------------------------CCccceeeEEEEEEEEECC
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI--E-----------------------------FQESTIGAAFFSQTLAVND 56 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~ 56 (162)
+..+||+++|.+++|||||+++|++.... . ...+.++.+..... ++.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~--~~~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSH--FST 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEE--EEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEE--Eec
Confidence 45699999999999999999999865111 0 00111122211222 333
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHH------HHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER------AKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 57 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
....+.+|||||+++|......+++.+|++++|+|++++.++.. ..+.+..+... ...|+++|+||+|+.+.
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTT
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccc
Confidence 45789999999999999999999999999999999999755432 22222222222 23479999999999764
Q ss_pred ccCCHHHHhhhc----C-----CCCCCeeeccccccc
Q 031263 131 RKVTAEARSTSL----C-----PGKWPILYGNLCKNS 158 (162)
Q Consensus 131 ~~~~~~~~~~~~----~-----~~~~~~~~~s~~~~~ 158 (162)
++...++.+..+ . ...++++++|+.++.
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~ 223 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGE 223 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCT
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCC
Confidence 443333332222 1 114566776665543
No 141
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.82 E-value=2.2e-20 Score=136.00 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=86.4
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCC-C-------ccceeeEEEEEEEEECCeEEEEEEEeCCCccc-------
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-Q-------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQER------- 71 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------- 71 (162)
+...+||+++|.+|+|||||+|++++...... + .++.+.+.....+..++..+.+.+|||||...
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 34579999999999999999999887665432 2 56666666666665566668999999999732
Q ss_pred cccch-------hhhhc-------------CCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 72 YHSLA-------PMYYR-------------GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 72 ~~~~~-------~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
+..+. ..++. .+|+++++++.+..........++..+.. .+|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 22222 22232 26789998877653211222334444422 78999999999986543
Q ss_pred cCCH--HHHhhhcCCCCCCeeeccccc
Q 031263 132 KVTA--EARSTSLCPGKWPILYGNLCK 156 (162)
Q Consensus 132 ~~~~--~~~~~~~~~~~~~~~~~s~~~ 156 (162)
.... +.....+...+++++.+|+..
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~ 187 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETD 187 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC----
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCC
Confidence 3322 233344445567777666544
No 142
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.81 E-value=1.1e-19 Score=140.31 Aligned_cols=122 Identities=17% Similarity=0.146 Sum_probs=83.6
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCCCC-------------------------------CCCccceeeEEEEEEEEE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI-------------------------------EFQESTIGAAFFSQTLAV 54 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 54 (162)
..+..++|+++|.+++|||||+++|+...-. .+..+.++.+.....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 3456799999999999999999999653211 111133444444444444
Q ss_pred CCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHH---HHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcC
Q 031263 55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---FERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (162)
Q Consensus 55 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~ 129 (162)
+ ...+.+|||||+.+|.......+..+|++++|+|++++.. |+....+...+.......+| +++++||+|+..
T Consensus 93 ~--~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 93 E--KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred C--CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence 4 4689999999999999888888999999999999998532 22111222222222123455 999999999853
No 143
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.81 E-value=3.8e-20 Score=143.95 Aligned_cols=137 Identities=19% Similarity=0.237 Sum_probs=96.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCcc-cccc--------chhhh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE-RYHS--------LAPMY 79 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~~--------~~~~~ 79 (162)
.++|+++|.+|+|||||+|++.+.+.. ....+..+.+.....+..++ ..+.+|||||.. ++.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999998643 23344444455555666666 678999999987 5532 23456
Q ss_pred hcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
++.+|++++|+|++++.+++... +++.+ .+.|+++|+||+|+... +..++.+..+. ..++++++|+.++
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg 389 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKG 389 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGT
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCC
Confidence 88899999999999887765543 32332 36799999999999653 34444444433 3356777666554
No 144
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.81 E-value=6.3e-19 Score=134.90 Aligned_cols=146 Identities=17% Similarity=0.136 Sum_probs=92.4
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCC---CCCCCcc--ceeeEEEEEEEEE-------------C--C----eEEEE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ---FIEFQES--TIGAAFFSQTLAV-------------N--D----ATVKF 61 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 61 (162)
.+++.++|+++|..++|||||+++|.+.. +..+..+ |+...+....+.. + + ....+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 34567999999999999999999999543 2233333 4444444333321 1 1 13789
Q ss_pred EEEeCCCccccccchhhhhcCCcEEEEEEECCCh----HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccC--CH
Q 031263 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--TA 135 (162)
Q Consensus 62 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--~~ 135 (162)
.+|||||++.|.......+..+|++++|+|++++ .+++.+.. +.... ..|+++++||+|+...... ..
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l~--~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEILG--IDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHTT--CCCEEEEEECTTSSCTTTTTTHH
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHcC--CCeEEEEEEccCCCCHHHHHHHH
Confidence 9999999999877666667788999999999953 44444332 33332 3479999999999765432 23
Q ss_pred HHHhhhcCC---CCCCeeecccccc
Q 031263 136 EARSTSLCP---GKWPILYGNLCKN 157 (162)
Q Consensus 136 ~~~~~~~~~---~~~~~~~~s~~~~ 157 (162)
++.+.++.. ..++++++|+.++
T Consensus 158 ~~i~~~l~~~~~~~~~~i~vSA~~g 182 (408)
T 1s0u_A 158 EQIKEFVKGTIAENAPIIPISAHHE 182 (408)
T ss_dssp HHHHHHHTTSTTTTCCEEEC-----
T ss_pred HHHHHHHhhcCCCCCeEEEeeCCCC
Confidence 444555443 4667888776654
No 145
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.80 E-value=2.8e-20 Score=139.14 Aligned_cols=142 Identities=19% Similarity=0.194 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCc--cceeeEEEEEEEEECCeEEEEEEEeCCCcc----ccccchhhhhc---
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQE--STIGAAFFSQTLAVNDATVKFEIWDTAGQE----RYHSLAPMYYR--- 81 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~--- 81 (162)
.+|+|+|.++||||||++++.+..+..... .|...+.. .+..++ ...+.+||+||.. ++..+...+++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~ 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--MVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE--EEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE--EEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence 468999999999999999999876432111 23333322 233332 2478999999953 33445455544
Q ss_pred CCcEEEEEEECCC---hHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeeccccc
Q 031263 82 GAAAAIIVYDITN---QASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCK 156 (162)
Q Consensus 82 ~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (162)
.++++++|+|+++ +++++.+..|+..+..+.. .+.|+++|+||+|+...+.. .++....+.. .++++++|+.+
T Consensus 236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~-~~~l~~~l~~-~~~v~~iSA~t 313 (342)
T 1lnz_A 236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAEN-LEAFKEKLTD-DYPVFPISAVT 313 (342)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHH-HHHHHHHCCS-CCCBCCCSSCC
T ss_pred hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHH-HHHHHHHhhc-CCCEEEEECCC
Confidence 4999999999998 7889999999999988642 58999999999999654311 1222222222 25666666554
Q ss_pred c
Q 031263 157 N 157 (162)
Q Consensus 157 ~ 157 (162)
.
T Consensus 314 g 314 (342)
T 1lnz_A 314 R 314 (342)
T ss_dssp S
T ss_pred C
Confidence 4
No 146
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.80 E-value=1.5e-19 Score=131.30 Aligned_cols=123 Identities=14% Similarity=0.131 Sum_probs=82.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-ccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhh-------h-
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM-------Y- 79 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-------~- 79 (162)
..++|+++|.+|+|||||+|++++..+.... .+..+........... ...+.+|||||..++...... +
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 4799999999999999999999988764211 1111111122223333 478999999998776543321 1
Q ss_pred -hcCCcEEEEEEECCChHHHHHH-HHHHHHHHHhCCCC--CeEEEEEeCCCCcCcccCC
Q 031263 80 -YRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPN--MVMALAGNKADLLDARKVT 134 (162)
Q Consensus 80 -~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~piiiv~nK~D~~~~~~~~ 134 (162)
.+.+|++++|+|++.. ++... ..|+..+......+ .|+++|+||+|+..++..+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~ 173 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP 173 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCC
Confidence 2368999999998753 34433 47777776653333 6999999999997655433
No 147
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.80 E-value=1.4e-18 Score=125.40 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=76.1
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccc-eeeEEEEEEEEECCeEEEEEEEeCCCccccccch--------
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQEST-IGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA-------- 76 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------- 76 (162)
....++|+|+|.+|+|||||++++++.... ....++ .+.+........++ ..+.+|||||+..+....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 345799999999999999999999988743 333333 33333344444555 679999999986653222
Q ss_pred ---hhhhcCCcEEEEEEECCChH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 77 ---PMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 77 ---~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
..+++.+|++++|+|+++.. ....+..|+..+........+++++.||+|+...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 23678899999999998621 1122223333332211123344555559999743
No 148
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.79 E-value=1.2e-19 Score=140.46 Aligned_cols=137 Identities=16% Similarity=0.168 Sum_probs=85.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccch--------hhh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA--------PMY 79 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 79 (162)
..+||+++|.+|+|||||+|++.+.... ....++.+.+.....+..++ ..+.+|||||...+.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4589999999999999999999987543 22334444444444555666 678999999986654332 235
Q ss_pred hcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
++.+|++++|+|++++.+... ..|+..+ ...|+++|+||+|+...+.+. ..+... ..++++.+|+.++
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----~~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg 368 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQV-----KHRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQK 368 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHH-----TTSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTT
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhc-----cCCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCC
Confidence 788999999999998765443 4455444 236999999999997765544 111111 3456666665544
No 149
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.79 E-value=1e-19 Score=140.38 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=73.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcc--------ccccchhhhhc
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE--------RYHSLAPMYYR 81 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~ 81 (162)
..+|+++|.+|||||||+|++.+..... ...+.|.+..............+.+|||||+. .+...+..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 3689999999999999999999876642 22333333222222233334679999999985 56667778899
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 82 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
.+|++++|+|++++.++. ..|+..+.+. .+.|+++|+||+|+...
T Consensus 82 ~ad~il~vvD~~~~~~~~--d~~~~~~l~~--~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAA--DEEVAKILYR--TKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HCSEEEEEEETTTCSCHH--HHHHHHHHTT--CCSCEEEEEECCCC---
T ss_pred hCCEEEEEEeCCCCCCHH--HHHHHHHHHH--cCCCEEEEEECccCccc
Confidence 999999999999865543 3344443332 57899999999998653
No 150
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.79 E-value=1.5e-18 Score=132.86 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=97.0
Q ss_pred CcccceEEEEEcCCCCCHHHHHHHHHhCC---CCCCCcc--ceeeEEEEEEEEE-------------C--C----eEEEE
Q 031263 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ---FIEFQES--TIGAAFFSQTLAV-------------N--D----ATVKF 61 (162)
Q Consensus 6 ~~~~~~ki~viG~~~~GKssli~~~~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 61 (162)
.+++.++|+++|..++|||||+++|.+.. +..+..+ |+...+....+.. + + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 34667999999999999999999999543 2223333 4444443333321 0 1 13789
Q ss_pred EEEeCCCccccccchhhhhcCCcEEEEEEECCCh----HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCccc--CCH
Q 031263 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTA 135 (162)
Q Consensus 62 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~~ 135 (162)
.+|||||++.|.......+..+|++++|+|++++ .+++.+. .+.... ..|+++++||+|+.+... ...
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~--~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG--QKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC--CCcEEEEEECccCCCHHHHHHHH
Confidence 9999999998877666667788999999999953 3444433 233332 357999999999976442 122
Q ss_pred HHHhhhcCC---CCCCeeeccccccc
Q 031263 136 EARSTSLCP---GKWPILYGNLCKNS 158 (162)
Q Consensus 136 ~~~~~~~~~---~~~~~~~~s~~~~~ 158 (162)
++.+.++.. ..++++++|+.++.
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~ 185 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGA 185 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTB
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCC
Confidence 334444443 46678887766543
No 151
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.79 E-value=5.5e-21 Score=149.94 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=88.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
++..+|+++|.+++|||||+++|.+..+...+.++++.+.....+..+ ....+.+|||||++.|..++..++..+|+++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 356889999999999999999999876655455555544433333331 2247899999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
+|+|++++.... |...+......++|+++++||+|+.+.
T Consensus 81 LVVDa~dg~~~q----t~e~l~~~~~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 81 LVVAADDGVMKQ----TVESIQHAKDAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp EECBSSSCCCHH----HHHHHHHHHTTTCCEEECCBSGGGTTT
T ss_pred EEEECCCCccHH----HHHHHHHHHHcCCcEEEEEeccccccc
Confidence 999999854433 333333333357899999999999654
No 152
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.79 E-value=5e-20 Score=142.04 Aligned_cols=148 Identities=18% Similarity=0.141 Sum_probs=93.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhC--CCCCCC-----------------------------ccceeeEEEEEEEEECC
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIEFQ-----------------------------ESTIGAAFFSQTLAVND 56 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 56 (162)
+..+||+++|..++|||||+++|++. .+.... .+.++.+..... ++.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~--~~~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMR--FET 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CE--EEC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEE--Eec
Confidence 45799999999999999999999874 222110 112222222222 333
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHh----CCCC-CeEEEEEeCCCCcCcc
Q 031263 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ----GNPN-MVMALAGNKADLLDAR 131 (162)
Q Consensus 57 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~-~piiiv~nK~D~~~~~ 131 (162)
....+.+|||||+.+|......+++.+|++++|+|+++ .+|+....|......+ .... .|+++++||+|+.+..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 44789999999999999888889999999999999998 6777655433332221 1123 4689999999997631
Q ss_pred --c----CCHHHHhhhcCCCC-----CCeeeccccccc
Q 031263 132 --K----VTAEARSTSLCPGK-----WPILYGNLCKNS 158 (162)
Q Consensus 132 --~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~ 158 (162)
+ ...++.+..+...+ ++++++|+..+.
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~ 198 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGD 198 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTB
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCc
Confidence 1 11233344433323 567776665443
No 153
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.79 E-value=1.1e-18 Score=134.60 Aligned_cols=146 Identities=21% Similarity=0.141 Sum_probs=93.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCC--CC----------Cccc---------------------eeeEEEEEEEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI--EF----------QEST---------------------IGAAFFSQTLAV 54 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~--~~----------~~~~---------------------~~~~~~~~~~~~ 54 (162)
+..+||+++|..++|||||+++|++.... .. ...+ ++.+..... +
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~--~ 99 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY--F 99 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE--E
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeE--e
Confidence 45699999999999999999999875411 00 0011 111111112 2
Q ss_pred CCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCccc--
Q 031263 55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-- 132 (162)
Q Consensus 55 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-- 132 (162)
......+.+|||||+++|......++..+|++++|+|++++. +.+..+|+..+.... -.|+++|+||+|+.+...
T Consensus 100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~-~~qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV-QTQTRRHSYIASLLG--IKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS-CHHHHHHHHHHHHTT--CCEEEEEEECTTTTTSCHHH
T ss_pred ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcC--CCeEEEEEEcCcCCcccHHH
Confidence 223468999999999999888888899999999999999864 233445555544442 237999999999975321
Q ss_pred C--CHHHHhhhcCCCC-----CCeeeccccccc
Q 031263 133 V--TAEARSTSLCPGK-----WPILYGNLCKNS 158 (162)
Q Consensus 133 ~--~~~~~~~~~~~~~-----~~~~~~s~~~~~ 158 (162)
. ..++.+.++...+ ++++++|+.++.
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~ 209 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGD 209 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCT
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCC
Confidence 1 1223334444444 567776665443
No 154
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.78 E-value=4e-19 Score=133.33 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=64.2
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECC----------ChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCC
Q 031263 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT----------NQASFERAKKWVQELQAQG-NPNMVMALAGNKA 125 (162)
Q Consensus 57 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~ 125 (162)
..+.+.+||++|++.++.+|..++++++++|+|||++ +..+|++...|+..+.... .+++|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 7889999999998887643 3689999999999
Q ss_pred CCcCc
Q 031263 126 DLLDA 130 (162)
Q Consensus 126 D~~~~ 130 (162)
|+...
T Consensus 261 DL~~~ 265 (354)
T 2xtz_A 261 DIFEK 265 (354)
T ss_dssp HHHHH
T ss_pred chhhh
Confidence 98543
No 155
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.78 E-value=2.1e-18 Score=127.08 Aligned_cols=139 Identities=14% Similarity=0.060 Sum_probs=87.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCC-CccceeeEEEEEEEEECCeEEEEEEEeCCCcc---------ccccchhh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEF-QESTIGAAFFSQTLAVNDATVKFEIWDTAGQE---------RYHSLAPM 78 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~ 78 (162)
+..+|+++|.+|+|||||+|++++..+... ..+..+.+.....+..+ ..++.+|||||.. .+......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 456899999999999999999999875421 11211111112223233 3688999999986 23344556
Q ss_pred hhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCC-eeeccc
Q 031263 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWP-ILYGNL 154 (162)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 154 (162)
+++.+|++++|+|+++ +.....|+..... ..+.|+++++||+|+...+....+..+......++. ++.+|+
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA 156 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISA 156 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCT
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEEC
Confidence 6888999999999976 3334445443333 247899999999998752222223333343444553 444444
No 156
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.78 E-value=9.8e-20 Score=145.29 Aligned_cols=150 Identities=22% Similarity=0.192 Sum_probs=93.2
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-------------------------------ccceeeEEEEEEEEEC
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-------------------------------ESTIGAAFFSQTLAVN 55 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 55 (162)
.+..+||+++|.+++|||||+++|++....... .+.++.+.....+ .
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~--~ 241 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--S 241 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEE--E
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEE--e
Confidence 456799999999999999999999965322111 0122222222222 2
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHH----HHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCc
Q 031263 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFE----RAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130 (162)
Q Consensus 56 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~----~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~~ 130 (162)
.....+.+|||||+.+|......+++.+|++|+|+|++++. |+ ....+...+..... ...|+++|+||+|+.+.
T Consensus 242 ~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~-~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 242 THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNA-FESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp CSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHH-HHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTT
T ss_pred cCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCc-ccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccch
Confidence 33468999999999999988888899999999999999753 11 11122222222112 23469999999999764
Q ss_pred ccCCHHHHh----hhcCC-----CCCCeeecccccccc
Q 031263 131 RKVTAEARS----TSLCP-----GKWPILYGNLCKNSN 159 (162)
Q Consensus 131 ~~~~~~~~~----~~~~~-----~~~~~~~~s~~~~~~ 159 (162)
+....++.. ..+.. ..++++.+|+.++.|
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~g 358 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEG 358 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTT
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCC
Confidence 332222222 22221 134677766655543
No 157
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.78 E-value=6.3e-19 Score=137.34 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=92.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQ-------FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 80 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 80 (162)
.+.++|+++|..++|||||++++.+.. +..+..+.++.+.....+..++ ..+.+|||||+++|.......+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 456999999999999999999999876 2222333333333333344444 7899999999999988888889
Q ss_pred cCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccC--CHHHHhhhcCCC----CCCeee
Q 031263 81 RGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--TAEARSTSLCPG----KWPILY 151 (162)
Q Consensus 81 ~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~ 151 (162)
..+|++++|+|+++ +.+++.+ ..+.. .++|+++++||+|+.++... ..++.+..+... .+++++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 167 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 167 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred hhCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence 99999999999998 4444433 23333 25778999999999753221 122333333322 457777
Q ss_pred cccccc
Q 031263 152 GNLCKN 157 (162)
Q Consensus 152 ~s~~~~ 157 (162)
+|+.++
T Consensus 168 vSA~~g 173 (482)
T 1wb1_A 168 ISAKTG 173 (482)
T ss_dssp CCTTTC
T ss_pred EECcCC
Confidence 776554
No 158
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.78 E-value=9.6e-20 Score=141.50 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=70.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhC--CCCC-----------------------------CCccceeeEEEEEEEEECC
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIE-----------------------------FQESTIGAAFFSQTLAVND 56 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 56 (162)
+..+||+++|..++|||||+++|+.. .+.. +....++++.....+..+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 45689999999999999999999752 2110 000111112212222233
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcC
Q 031263 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ---ASFERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (162)
Q Consensus 57 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~ 129 (162)
...+.+|||||+.+|.......+..+|++++|+|++++ .+|+....|...+......++| +++++||+|+..
T Consensus 120 -~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 120 -HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPS 195 (467)
T ss_dssp -SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTT
T ss_pred -CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCC
Confidence 36899999999999988888889999999999999986 3443333444444333224666 999999999954
No 159
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.77 E-value=1.7e-18 Score=137.57 Aligned_cols=145 Identities=15% Similarity=0.146 Sum_probs=91.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCC--CCC-----CC------ccceeeEEEEEEEEE-----CCeEEEEEEEeCCCcc
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQ--FIE-----FQ------ESTIGAAFFSQTLAV-----NDATVKFEIWDTAGQE 70 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~--~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~ 70 (162)
...||+++|..++|||||+++++... ... .. ....|.+........ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999998632 110 00 011222222222222 4557899999999999
Q ss_pred ccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCC-HHHHhhhcCCCCCCe
Q 031263 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT-AEARSTSLCPGKWPI 149 (162)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~ 149 (162)
+|...+..+++.+|++++|+|++++.++.....|...+. .++|+++|+||+|+...+... .++....+......+
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~v 158 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDA 158 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceE
Confidence 999999999999999999999999877777777765542 367999999999997654211 122222222222346
Q ss_pred eecccccc
Q 031263 150 LYGNLCKN 157 (162)
Q Consensus 150 ~~~s~~~~ 157 (162)
+++|+.++
T Consensus 159 i~vSAktg 166 (599)
T 3cb4_D 159 VRCSAKTG 166 (599)
T ss_dssp EEECTTTC
T ss_pred EEeecccC
Confidence 66666554
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.77 E-value=2.2e-19 Score=137.27 Aligned_cols=147 Identities=14% Similarity=0.183 Sum_probs=96.5
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhC--------CCCCC--C-----ccceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKG--------QFIEF--Q-----ESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~--------~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 71 (162)
.+..+||+++|..++|||||+++|++. .+... . ....+.+.......++.....+.+|||||+.+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456799999999999999999999973 21110 0 00112222122233334447889999999999
Q ss_pred cccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcCccc-C--CHHHHhhhcCCC--
Q 031263 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARK-V--TAEARSTSLCPG-- 145 (162)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~--~~~~~~~~~~~~-- 145 (162)
|......++..+|++++|+|++++.. .+..+|+..+... ++| +++++||+|+..... . ..++.+..+...
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 98888888999999999999998643 3445666655544 567 899999999974221 1 112233333222
Q ss_pred ---CCCeeecccccc
Q 031263 146 ---KWPILYGNLCKN 157 (162)
Q Consensus 146 ---~~~~~~~s~~~~ 157 (162)
.++++++|+.++
T Consensus 164 ~~~~~~~i~~SA~~g 178 (405)
T 2c78_A 164 PGDEVPVIRGSALLA 178 (405)
T ss_dssp CTTTSCEEECCHHHH
T ss_pred cccCCCEEEccHHHh
Confidence 367888777655
No 161
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=2.7e-19 Score=138.71 Aligned_cols=116 Identities=19% Similarity=0.162 Sum_probs=78.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCC--------ccccccchhhhh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG--------QERYHSLAPMYY 80 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~~~ 80 (162)
...+|+++|.+|||||||+|++.+..+.. ...+.+.+..............+.+||||| ++++......++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 35799999999999999999999876542 223334443333344444456899999999 667777888889
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
+.+|++++|+|..+. +.....|+..+.+. .+.|+++|+||+|+.+
T Consensus 101 ~~ad~il~VvD~~~~--~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 101 DEADVIIFMVNGREG--VTAADEEVAKILYR--TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp HHCSEEEEEEESSSC--SCHHHHHHHHHHTT--CCSCEEEEEECC----
T ss_pred hhCCEEEEEEeCCCC--CChHHHHHHHHHHH--cCCCEEEEEECccchh
Confidence 999999999998864 33334455444443 5789999999999864
No 162
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.77 E-value=1e-18 Score=128.22 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=89.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCC------cccee--------------------eEE--------------
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ------ESTIG--------------------AAF-------------- 47 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~------~~~~~--------------------~~~-------------- 47 (162)
....+|+|+|.+++|||||+|++++..+.+.. .|+.. .++
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999998874211 12100 000
Q ss_pred -----------EEEEEEECCeEEEEEEEeCCCcc-------------ccccchhhhhcCCcEEE-EEEECCChHHHHHHH
Q 031263 48 -----------FSQTLAVNDATVKFEIWDTAGQE-------------RYHSLAPMYYRGAAAAI-IVYDITNQASFERAK 102 (162)
Q Consensus 48 -----------~~~~~~~~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~ 102 (162)
....+.. .....+.+|||||.. .+..+...+++.++.++ +|+|++++.+.....
T Consensus 104 ~g~~~gi~~~~~~~~~~~-~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYS-PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEE-TTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred cccCCCccccceEEEEeC-CCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0000000 012579999999963 34456667888888776 699998754433333
Q ss_pred HHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCC--CCCCeeecccccccc
Q 031263 103 KWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCP--GKWPILYGNLCKNSN 159 (162)
Q Consensus 103 ~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~ 159 (162)
.|+..+. ..+.|+++|+||+|+........+..+..+.. .+|..+...|++++.
T Consensus 183 ~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~ 238 (299)
T 2aka_B 183 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDID 238 (299)
T ss_dssp HHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTT
T ss_pred HHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhcc
Confidence 3444432 34789999999999976554334444432222 245434444454443
No 163
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.77 E-value=3.4e-18 Score=135.71 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=84.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCC--CCC-----CCcc------ceeeEEE--EEEEEE---CCeEEEEEEEeCCCc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQ--FIE-----FQES------TIGAAFF--SQTLAV---NDATVKFEIWDTAGQ 69 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~--~~~-----~~~~------~~~~~~~--~~~~~~---~~~~~~~~~~D~~g~ 69 (162)
....+|+++|..++|||||+++++... ... .... ..|.+.. ...+.. ++..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456899999999999999999998631 110 0000 0111111 111111 455689999999999
Q ss_pred cccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
.+|.......++.+|++++|+|++++.+......|..... .++|+++|+||+|+...+
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~ 141 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD 141 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC
Confidence 9999888889999999999999999877777777765542 478999999999997644
No 164
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.77 E-value=1.7e-18 Score=128.89 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=65.2
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECC----------ChHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCC
Q 031263 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT----------NQASFERAKKWVQELQAQG-NPNMVMALAGNKA 125 (162)
Q Consensus 57 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~ 125 (162)
..+.+++||++|++.++.+|..++++++++|+|||++ +..+|.+...|+..+.... ..++|++|++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 4488999999999999999999999999999999998 7788999888888887653 3789999999999
Q ss_pred CCcC
Q 031263 126 DLLD 129 (162)
Q Consensus 126 D~~~ 129 (162)
|+..
T Consensus 239 DL~~ 242 (340)
T 4fid_A 239 DLFE 242 (340)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9854
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.77 E-value=3.4e-20 Score=144.38 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=83.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 87 (162)
++..+|+++|+.++|||||++++.+..+.....+.++.+.....+..++ ..+.+|||||++.|..++...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4678999999999999999999998655543333333332222232333 47899999999999999988899999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
+|+|++++... +..+++..+.. .++|+++++||+|+.+.
T Consensus 80 LVVda~~g~~~-qT~e~l~~~~~---~~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 80 LVVAADDGVMP-QTIEAIQHAKA---AQVPVVVAVNKIDKPEA 118 (501)
T ss_dssp EEEETTTBSCT-TTHHHHHHHHH---TTCCEEEEEECSSSSTT
T ss_pred EEeecccCccH-HHHHHHHHHHh---cCceEEEEEEecccccc
Confidence 99999884211 11122222222 47789999999999653
No 166
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=6.6e-18 Score=130.35 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=88.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL----------- 75 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------- 75 (162)
...+||+++|.+|||||||+|++++.... ....+..+.+.....+..++. .+.+|||+|..+....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 34689999999999999999999987653 222333333444455666774 6789999997433221
Q ss_pred h-hhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHh----hhcC-CCCCCe
Q 031263 76 A-PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARS----TSLC-PGKWPI 149 (162)
Q Consensus 76 ~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~----~~~~-~~~~~~ 149 (162)
. ..+++.+|++++++|++++.+.... .+...+.. .+.|+++|+||+|+.+.+....++.. ..+. ....++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 1 2356779999999999986554432 22222322 46899999999999766554433322 2222 223466
Q ss_pred eecccccc
Q 031263 150 LYGNLCKN 157 (162)
Q Consensus 150 ~~~s~~~~ 157 (162)
+++|+.++
T Consensus 332 ~~~SA~~g 339 (439)
T 1mky_A 332 IFTSADKG 339 (439)
T ss_dssp EECBTTTT
T ss_pred EEEECCCC
Confidence 77665554
No 167
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.77 E-value=1e-19 Score=141.04 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=92.9
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhC--CCCCC-----------------------------CccceeeEEEEEEEEEC
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKG--QFIEF-----------------------------QESTIGAAFFSQTLAVN 55 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 55 (162)
.+..++|+++|..++|||||+++|++. .+... ....++.+.....+ +
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~--~ 81 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF--E 81 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE--E
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE--e
Confidence 346799999999999999999999864 12110 00112222212222 2
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChH---HHH---HHHHHHHHHHHhCCCCC-eEEEEEeCCCCc
Q 031263 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA---SFE---RAKKWVQELQAQGNPNM-VMALAGNKADLL 128 (162)
Q Consensus 56 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~-piiiv~nK~D~~ 128 (162)
.....+.+|||||+.+|......++..+|++++|+|++++. +|+ +..+++..+... .+ ++++++||+|+.
T Consensus 82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSV 158 (458)
T ss_dssp CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGG
T ss_pred cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEccccc
Confidence 33478999999999999888888899999999999999763 221 233333333322 44 499999999997
Q ss_pred CcccC----CHHHHhhhcCCC-----CCCeeecccccccc
Q 031263 129 DARKV----TAEARSTSLCPG-----KWPILYGNLCKNSN 159 (162)
Q Consensus 129 ~~~~~----~~~~~~~~~~~~-----~~~~~~~s~~~~~~ 159 (162)
+.... ..++.+.++... .++++++|+..+.|
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~n 198 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDN 198 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcC
Confidence 32111 112233222222 35777777665543
No 168
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.77 E-value=5e-18 Score=127.98 Aligned_cols=117 Identities=19% Similarity=0.131 Sum_probs=81.4
Q ss_pred eE-EEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc---------cccchhhhh
Q 031263 11 AK-LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER---------YHSLAPMYY 80 (162)
Q Consensus 11 ~k-i~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~ 80 (162)
++ |+++|.+|+|||||+|++.+........+..+.+.....+.+++ ..+.+|||+|.-. +... ...+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHH
Confidence 55 99999999999999999998876432222233333455666776 5689999999621 2222 2246
Q ss_pred cCCcEEEEEEECCChH--HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 81 RGAAAAIIVYDITNQA--SFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 81 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
..+|++++|+|++++. ..+.+..|...+......+.|+++|+||+|+...
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 7899999999999876 6666777777776665568899999999998653
No 169
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.76 E-value=7.6e-19 Score=134.02 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=92.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCC-------CCCC-------CccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQ-------FIEF-------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS 74 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 74 (162)
+.+||+++|..++|||||+++|++.. +... .....+.+.......+......+.+|||||+.+|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999999741 1100 000112222222233333447899999999999888
Q ss_pred chhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcCccc-C--CHHHHhhhcCCC-----
Q 031263 75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARK-V--TAEARSTSLCPG----- 145 (162)
Q Consensus 75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~--~~~~~~~~~~~~----- 145 (162)
....++..+|++++|+|+++....+ ..+++..+... ++| +++++||+|+.+... . ..++.+..+...
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 8888899999999999999854322 23333333333 567 789999999974211 1 112333333322
Q ss_pred CCCeeecccccc
Q 031263 146 KWPILYGNLCKN 157 (162)
Q Consensus 146 ~~~~~~~s~~~~ 157 (162)
.++++++|+.++
T Consensus 158 ~~~~i~~SA~~g 169 (397)
T 1d2e_A 158 ETPIIVGSALCA 169 (397)
T ss_dssp TSCEEECCHHHH
T ss_pred cCcEEEeehhhc
Confidence 367888777654
No 170
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.74 E-value=1.2e-17 Score=125.96 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=94.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCcccee-----eEE---------EEE-------------------------
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIG-----AAF---------FSQ------------------------- 50 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~-----~~~---------~~~------------------------- 50 (162)
..+|+|+|++|+|||||+|++.+..+.+......+ ... ...
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 34999999999999999999999877433322211 000 000
Q ss_pred -------------EEEE-CCeEEEEEEEeCCCcccc-------------ccchhhhhcCCcEEEEEEECCChHHHHHHHH
Q 031263 51 -------------TLAV-NDATVKFEIWDTAGQERY-------------HSLAPMYYRGAAAAIIVYDITNQASFERAKK 103 (162)
Q Consensus 51 -------------~~~~-~~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 103 (162)
.+.+ ......+.+|||||...+ ..+...+++.+++++++++.++.+... ..
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~ 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence 0000 011235899999998765 566778899999999999876533221 34
Q ss_pred HHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccc
Q 031263 104 WVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLC 155 (162)
Q Consensus 104 ~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 155 (162)
|+..+........|+++|+||+|+..+........+......+.+++.++..
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 243 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNR 243 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCC
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEEC
Confidence 5555555544577999999999998766666565665555556666655544
No 171
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.74 E-value=5.8e-18 Score=134.56 Aligned_cols=115 Identities=22% Similarity=0.240 Sum_probs=82.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCC----CccceeeEEEEEEE------------EECCeEEEEEEEeCCCccc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEF----QESTIGAAFFSQTL------------AVNDATVKFEIWDTAGQER 71 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~~~D~~g~~~ 71 (162)
.+..+|+++|..++|||||++++++..+... ...+++..+..... ..+.....+++|||||+..
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 4568999999999999999999997654321 11233332221110 0001123589999999999
Q ss_pred cccchhhhhcCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 72 YHSLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
|..++..+++.+|++++|+|+++ +.+++.+.. +.. .++|+++++||+|+..
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIH 136 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGST
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEeccccccc
Confidence 99999988999999999999999 666665442 222 4789999999999964
No 172
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.73 E-value=4.1e-18 Score=128.75 Aligned_cols=129 Identities=8% Similarity=0.056 Sum_probs=89.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEE
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 91 (162)
+|+++|..++|||||+++|+ ....|+... ...+ ......+.+|||||+.+|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~--~~~~--~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDIT--MYNN--DKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSE--EEEE--CSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEee--EEEE--ecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 122233322 2223 3334579999999999998777788899999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCCCeE-EEEEe-CCCCcCcccCCH--HHHhhhcCCC---CCCeee--ccccc
Q 031263 92 ITNQASFERAKKWVQELQAQGNPNMVM-ALAGN-KADLLDARKVTA--EARSTSLCPG---KWPILY--GNLCK 156 (162)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~~~~pi-iiv~n-K~D~~~~~~~~~--~~~~~~~~~~---~~~~~~--~s~~~ 156 (162)
++ ..+.+..+|+..+... .+|. ++++| |+|+ ++..+.. ++.+.++... .+++++ +|+.+
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~ 160 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSA 160 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTS
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence 54 3455566676666554 4455 88888 9999 5443332 4455555443 357777 66655
No 173
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.73 E-value=2.9e-18 Score=134.74 Aligned_cols=117 Identities=13% Similarity=0.078 Sum_probs=83.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCC-----------------CC-----CccceeeEEEEEEEEECCeEEEEEEEe
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-----------------EF-----QESTIGAAFFSQTLAVNDATVKFEIWD 65 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~-----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D 65 (162)
.+..+|+++|.+++|||||+++|+...-. .. ..+.++.......+... ...+.+||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEEE
Confidence 45689999999999999999999721100 00 00111111112223333 47899999
Q ss_pred CCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
|||+.+|...+..+++.+|++++|+|++++.+......|. .+. ..++|+++|+||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~---~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCR---LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHH---TTTCCEEEEEECTTSCCS
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEeCCCCccc
Confidence 9999999999999999999999999999876666555553 222 247899999999999654
No 174
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.71 E-value=7.7e-18 Score=140.46 Aligned_cols=147 Identities=16% Similarity=0.176 Sum_probs=94.4
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCC-------CCC-------CCccceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ-------FIE-------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 72 (162)
.++.+||+++|..++|||||+++|++.. +.. ....+.|.+.......++.....+.+|||||+.+|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3456999999999999999999998741 100 00122232222222233444578999999999999
Q ss_pred ccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCcCcccC---CHHHHhhhcCC----
Q 031263 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKV---TAEARSTSLCP---- 144 (162)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~---~~~~~~~~~~~---- 144 (162)
......++..+|++|+|+|++++.. .+..+|+..+... ++| +++++||+|+.+.... ..++.+..+..
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 8888888999999999999998642 3344555555444 567 8899999999752211 11233333322
Q ss_pred -CCCCeeecccccc
Q 031263 145 -GKWPILYGNLCKN 157 (162)
Q Consensus 145 -~~~~~~~~s~~~~ 157 (162)
..++++++|+.++
T Consensus 449 ~~~vp~IpvSAktG 462 (1289)
T 3avx_A 449 GDDTPIVRGSALKA 462 (1289)
T ss_dssp TTTCCEEECCSTTT
T ss_pred ccceeEEEEEeccC
Confidence 2467888777665
No 175
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.71 E-value=5.5e-19 Score=140.59 Aligned_cols=148 Identities=20% Similarity=0.178 Sum_probs=76.4
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCCC-------------------------------CCCCccceeeEEEEEEEEEC
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQF-------------------------------IEFQESTIGAAFFSQTLAVN 55 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 55 (162)
.+..+||+++|.+++|||||+++|+...- .....+.++.+.....+ .
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~--~ 251 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTF--E 251 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEE--E
Confidence 34568999999999999999999974210 00011222333222222 2
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChH---HH---HHHHHHHHHHHHhCCCCCe-EEEEEeCCCCc
Q 031263 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA---SF---ERAKKWVQELQAQGNPNMV-MALAGNKADLL 128 (162)
Q Consensus 56 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~ 128 (162)
.....+.||||||+.+|.......+..+|++|+|+|++++. .+ ......+..+... .+| +++|+||+|+.
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~ 328 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGG
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccc
Confidence 33478999999999999888888899999999999998642 11 1112222223333 444 99999999997
Q ss_pred CcccCC----HHHHhhhc-CCCCC-----Ceeecccccccc
Q 031263 129 DARKVT----AEARSTSL-CPGKW-----PILYGNLCKNSN 159 (162)
Q Consensus 129 ~~~~~~----~~~~~~~~-~~~~~-----~~~~~s~~~~~~ 159 (162)
+..... ..+....+ ...++ +++++|+.++.|
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~g 369 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTN 369 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSS
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcc
Confidence 532211 22333444 33344 566666655543
No 176
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.71 E-value=7.7e-17 Score=130.39 Aligned_cols=124 Identities=20% Similarity=0.206 Sum_probs=87.6
Q ss_pred CCCCCCcccceEEEEEcCCCCCHHHHHHHHHh--CCCCCC-----------C-----ccceeeEEEEEEEEECCeEEEEE
Q 031263 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVK--GQFIEF-----------Q-----ESTIGAAFFSQTLAVNDATVKFE 62 (162)
Q Consensus 1 m~~~~~~~~~~ki~viG~~~~GKssli~~~~~--~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~ 62 (162)
|++........+|+++|.+++|||||+++++. +.+... + .+.++.......+... ...+.
T Consensus 1 m~~~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~ 78 (693)
T 2xex_A 1 MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVN 78 (693)
T ss_dssp -CCSSCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEE
T ss_pred CCCcCCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEE
Confidence 56565566789999999999999999999995 222100 0 0111111112223333 37899
Q ss_pred EEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 63 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
+|||||+..|......+++.+|++++|+|++++.+......|.. +.. .++|+++|+||+|+...
T Consensus 79 liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 79 IIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp EECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred EEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCcccc
Confidence 99999999998888899999999999999998776666555543 333 37899999999999764
No 177
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.70 E-value=7.9e-17 Score=119.07 Aligned_cols=145 Identities=17% Similarity=0.132 Sum_probs=84.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCc----cceeeEEEEE---------------------------------
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE----STIGAAFFSQ--------------------------------- 50 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~----~~~~~~~~~~--------------------------------- 50 (162)
....+|+|+|.+++|||||+|++++..+.+... ...+......
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 345799999999999999999999987632211 0000000000
Q ss_pred ------E--------------EE-ECCeEEEEEEEeCCCccc-------------cccchhhhhcCCcEEEEEEECCChH
Q 031263 51 ------T--------------LA-VNDATVKFEIWDTAGQER-------------YHSLAPMYYRGAAAAIIVYDITNQA 96 (162)
Q Consensus 51 ------~--------------~~-~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~ 96 (162)
. +. ......++.+|||||... +......+++.+|++++|+|.++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0 00 011124799999999743 4455667789999999999975422
Q ss_pred HH-HHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccc
Q 031263 97 SF-ERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLC 155 (162)
Q Consensus 97 s~-~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 155 (162)
.. .....+...+ ...+.|+++|+||+|+........+..+..+...+..++.++..
T Consensus 182 ~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 238 (315)
T 1jwy_B 182 LANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINR 238 (315)
T ss_dssp STTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCC
T ss_pred hhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecC
Confidence 11 1111222222 23478999999999997655433444443333322344444433
No 178
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.70 E-value=5.1e-17 Score=131.40 Aligned_cols=119 Identities=19% Similarity=0.155 Sum_probs=85.5
Q ss_pred CCcccceEEEEEcCCCCCHHHHHHHHHhC--CCC------C------------CCccceeeEEEEEEEEECCeEEEEEEE
Q 031263 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKG--QFI------E------------FQESTIGAAFFSQTLAVNDATVKFEIW 64 (162)
Q Consensus 5 ~~~~~~~ki~viG~~~~GKssli~~~~~~--~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (162)
....+..+|+++|..++|||||+++++.. .+. . ....++. .....+... ...+.+|
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~--~~~~~~~~~--~~~i~li 82 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT--AAVTTCFWK--DHRINII 82 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEET--TEEEEEE
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc--cceEEEEEC--CeEEEEE
Confidence 34466799999999999999999999842 110 0 1111221 112223333 4789999
Q ss_pred eCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 65 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
||||+..|...+..+++.+|++++|+|+++..++.....|.. +.. .++|+++|+||+|+....
T Consensus 83 DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTCC
T ss_pred ECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCcccCC
Confidence 999999999899999999999999999999877766666653 332 378999999999997543
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.69 E-value=3.6e-17 Score=128.61 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=79.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCC--------------------ccceeeEEEEEEEEECCeEEEEEEEeCC
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ--------------------ESTIGAAFFSQTLAVNDATVKFEIWDTA 67 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 67 (162)
.+..+|+++|.+++|||||+++++...-.... ....+.+.......+......+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 45799999999999999999999973211000 0111111111112222334789999999
Q ss_pred CccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
|+..|......+++.+|++++|+|++++.... ...++.. ....++|+++++||+|+....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~---~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEV---TRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHH---HTTTTCCEEEEEECTTSCCSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHH---HHHcCCCEEEEEcCcCCcccc
Confidence 99999888888999999999999999853211 1222222 223578999999999997644
No 180
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.68 E-value=6.4e-16 Score=125.18 Aligned_cols=127 Identities=19% Similarity=0.132 Sum_probs=87.1
Q ss_pred CCCCCCcccceEEEEEcCCCCCHHHHHHHHHhCC--CCCC-----------C-----ccceeeEEEEEEEEE-----CCe
Q 031263 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQ--FIEF-----------Q-----ESTIGAAFFSQTLAV-----NDA 57 (162)
Q Consensus 1 m~~~~~~~~~~ki~viG~~~~GKssli~~~~~~~--~~~~-----------~-----~~~~~~~~~~~~~~~-----~~~ 57 (162)
|.......+..+|+++|..++|||||+++|+... +... + ...++.......+.. ++.
T Consensus 1 ~~~~~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 80 (704)
T 2rdo_7 1 MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYE 80 (704)
T ss_pred CCCCCCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCC
Confidence 4433344567999999999999999999998531 1110 0 011112111222222 223
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 58 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
.+.+++|||||+.+|...+..+++.+|++|+|+|+++.........|.. +. ..++|+++++||+|+...+
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~~~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN---KYKVPRIAFVNKMDRMGAN 150 (704)
T ss_pred ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH---HcCCCEEEEEeCCCccccc
Confidence 4889999999999998888999999999999999998765554444432 22 2478999999999986543
No 181
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.68 E-value=1.8e-16 Score=130.55 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=86.2
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCC------------CCC----CCc--cceeeEEEEEEEE------------ECC
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ------------FIE----FQE--STIGAAFFSQTLA------------VND 56 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~------------~~~----~~~--~~~~~~~~~~~~~------------~~~ 56 (162)
.....||+++|..++|||||+++++... +.. ... .|+.......... .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3456899999999999999999998741 100 001 1222111111121 234
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 57 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
..+.+++|||||+.+|...+..+++.+|++|+|+|++++.++.....|.... ..++|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~----~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----HcCCCeEEEEECCCcc
Confidence 5789999999999999999999999999999999999987777766665433 2468999999999985
No 182
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.67 E-value=7.6e-17 Score=123.29 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=82.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCC--------ccceeeEEEEEEEEECCeEEEEEEEeCCCccccc------
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ--------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH------ 73 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------ 73 (162)
...++|+++|++|+|||||++++.+..+.... .++.+.......+...+....+++||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34589999999999999999999987663211 1222222222222233444689999999975431
Q ss_pred -c------------------chhhhhcCCcEEEEEEECCCh-HHHHHHH-HHHHHHHHhCCCCCeEEEEEeCCCCcCccc
Q 031263 74 -S------------------LAPMYYRGAAAAIIVYDITNQ-ASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARK 132 (162)
Q Consensus 74 -~------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~ 132 (162)
. +...++.++++.+++|+...- .++.... .|+..+. ..+|+++|+||+|+...+.
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence 1 112334555554555554432 3454444 5766663 3789999999999977666
Q ss_pred CCH--HHHhhhcCCCCCCeeecccccc
Q 031263 133 VTA--EARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 133 ~~~--~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
+.. +++...+..++.+++++|++.+
T Consensus 185 v~~~k~~i~~~~~~~~i~~~~~sa~~~ 211 (418)
T 2qag_C 185 CQQFKKQIMKEIQEHKIKIYEFPETDD 211 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCC----
T ss_pred HHHHHHHHHHHHHHcCCeEEeCCCCCC
Confidence 554 4555566556677777776544
No 183
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.66 E-value=3.6e-16 Score=117.67 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=65.4
Q ss_pred ccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCC----------hHHHHHHHHHHHHHH
Q 031263 40 ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQ 109 (162)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~ 109 (162)
.+|.|.+. ..+..++ +.+.+||++|++.++..|..++++++++|+|||+++ ..+|.+...|+..+.
T Consensus 186 ~~T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~ 261 (362)
T 1zcb_A 186 RPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIV 261 (362)
T ss_dssp CCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHH
T ss_pred CCccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHh
Confidence 35666553 3444544 889999999999999999999999999999999999 789999999998887
Q ss_pred Hh-CCCCCeEEEEEeCCCCcC
Q 031263 110 AQ-GNPNMVMALAGNKADLLD 129 (162)
Q Consensus 110 ~~-~~~~~piiiv~nK~D~~~ 129 (162)
.. ...++|++|++||+|+..
T Consensus 262 ~~~~~~~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 262 NNRVFSNVSIILFLNKTDLLE 282 (362)
T ss_dssp TCGGGTTSEEEEEEECHHHHH
T ss_pred cchhhCCCCEEEEEEChhhhh
Confidence 65 246899999999999864
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.66 E-value=7.3e-16 Score=124.74 Aligned_cols=121 Identities=14% Similarity=0.180 Sum_probs=82.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-cccee-e-----------EE---------------------------
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIG-A-----------AF--------------------------- 47 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~-~~~~~-~-----------~~--------------------------- 47 (162)
...++|+|+|.+++|||||+|++++....+.. .++.. . ..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 35689999999999999999999988765422 22220 0 00
Q ss_pred --------------EEEEEEECCeE--EEEEEEeCCCccc---cccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHH
Q 031263 48 --------------FSQTLAVNDAT--VKFEIWDTAGQER---YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108 (162)
Q Consensus 48 --------------~~~~~~~~~~~--~~~~~~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 108 (162)
....+...... ..+.+|||||... .......+++.+|++++|+|++++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 00000011000 3589999999654 3455567889999999999999887777666665444
Q ss_pred HHhCCCCCeEEEEEeCCCCcCcc
Q 031263 109 QAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 109 ~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
.. ...|+++|+||+|+....
T Consensus 227 ~~---~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp TT---SCCCEEEEEECGGGGGGG
T ss_pred Hh---hCCCEEEEEECccccccc
Confidence 32 356899999999996543
No 185
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.65 E-value=1.4e-17 Score=122.68 Aligned_cols=122 Identities=16% Similarity=0.101 Sum_probs=93.5
Q ss_pred HHHHHHHhCCCC-CCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChH-HHHHHH
Q 031263 25 SLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA-SFERAK 102 (162)
Q Consensus 25 sli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~ 102 (162)
+|+.++..+.|. ..+.||+|..+. ..+..++ ++.+||+ +++++.++..+++++|++++|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 588888888888 778899996543 3332332 7899999 8999999999999999999999999987 788899
Q ss_pred HHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhh---hcCCCCCCeeeccccccc
Q 031263 103 KWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARST---SLCPGKWPILYGNLCKNS 158 (162)
Q Consensus 103 ~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~ 158 (162)
.|+..+.. .++|++||+||+|+.+.+.+ ++.+. ..... ++++++|+.++.
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~-~~~~~~SAktg~ 158 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGL-YPIVKTSAKTGM 158 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTT-SCEEECCTTTCT
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhh-CcEEEEECCCCc
Confidence 99988765 47899999999999765543 22222 22323 778887766554
No 186
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.64 E-value=2e-16 Score=110.19 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=68.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc----------cccchh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHSLAP 77 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~ 77 (162)
....+|+++|.+|+|||||++++.+..+.....++.|.+........++ .+.+||+||... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 3468999999999999999999998764433345555443323333332 578999999742 222222
Q ss_pred hhh---cCCcEEEEEEECCChHHHH--HHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 78 MYY---RGAAAAIIVYDITNQASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 78 ~~~---~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
.++ ..++++++++|++++.++. .+..|+. . ...|+++++||+|+...
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~----~--~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV----D--SNIAVLVLLTKADKLAS 152 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH----H--TTCCEEEEEECGGGSCH
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH----H--cCCCeEEEEecccCCCc
Confidence 333 4689999999999864432 2233332 2 36789999999998653
No 187
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.64 E-value=8.9e-17 Score=126.96 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=81.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCC---CCCccceeeEEEEE----------------------EEEECC-----e
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI---EFQESTIGAAFFSQ----------------------TLAVND-----A 57 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~---~~~~~~~~~~~~~~----------------------~~~~~~-----~ 57 (162)
....+|+|+|.+|+|||||+|++++..+. ....++........ .+...+ .
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999998764 11222221100000 000000 0
Q ss_pred E----------EEEEEEeCCCccc-----------cccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC
Q 031263 58 T----------VKFEIWDTAGQER-----------YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNM 116 (162)
Q Consensus 58 ~----------~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 116 (162)
. ..+.+|||||... +......++..+|++++|+|+++.........|+..+.. ...
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~ 219 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HED 219 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCC
Confidence 0 2589999999764 345566678889999999999875444555666665533 357
Q ss_pred eEEEEEeCCCCcCcccC
Q 031263 117 VMALAGNKADLLDARKV 133 (162)
Q Consensus 117 piiiv~nK~D~~~~~~~ 133 (162)
|+++|+||+|+.....+
T Consensus 220 pvilVlNK~Dl~~~~el 236 (550)
T 2qpt_A 220 KIRVVLNKADMVETQQL 236 (550)
T ss_dssp GEEEEEECGGGSCHHHH
T ss_pred CEEEEEECCCccCHHHH
Confidence 89999999999765443
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.64 E-value=2.6e-16 Score=119.89 Aligned_cols=85 Identities=24% Similarity=0.127 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCcc--ceeeEEEEEEE-------------------EECC-eEEEEEEEeCCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQES--TIGAAFFSQTL-------------------AVND-ATVKFEIWDTAG 68 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~--~~~~~~~~~~~-------------------~~~~-~~~~~~~~D~~g 68 (162)
+||+++|.+|||||||+|++++........+ |...+...... ..++ ...++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998763221221 22222221111 1122 247899999999
Q ss_pred ccc----cccchh---hhhcCCcEEEEEEECCCh
Q 031263 69 QER----YHSLAP---MYYRGAAAAIIVYDITNQ 95 (162)
Q Consensus 69 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 95 (162)
... ...+.. .+++.+|++++|+|++++
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222322 346889999999999875
No 189
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.64 E-value=6.8e-16 Score=117.28 Aligned_cols=86 Identities=21% Similarity=0.244 Sum_probs=73.1
Q ss_pred cceeeEEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCC----------hHHHHHHHHHHHHHHH
Q 031263 41 STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQA 110 (162)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~ 110 (162)
+|+|.+. ..+.+++ +.+.+||++|++.++.+|..++++++++|+|||+++ ..+|.+...|+..+..
T Consensus 203 ~TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~ 278 (402)
T 1azs_C 203 LTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN 278 (402)
T ss_dssp CCCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT
T ss_pred ceeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHh
Confidence 3555553 3444554 899999999999999999999999999999999999 8999999999999887
Q ss_pred hC-CCCCeEEEEEeCCCCcCc
Q 031263 111 QG-NPNMVMALAGNKADLLDA 130 (162)
Q Consensus 111 ~~-~~~~piiiv~nK~D~~~~ 130 (162)
.. .+++|++||+||+|+...
T Consensus 279 ~~~~~~~piiLvgNK~DL~~~ 299 (402)
T 1azs_C 279 NRWLRTISVILFLNKQDLLAE 299 (402)
T ss_dssp CTTCSSCCEEEEEECHHHHHH
T ss_pred cccCCCCeEEEEEEChhhhhh
Confidence 53 478999999999998543
No 190
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.63 E-value=5.6e-17 Score=119.49 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=76.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhC-CCCCCC--------ccceeeEEEEEEEEECCeEEEEEEEeCCCc-------cc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKG-QFIEFQ--------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQ-------ER 71 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~~ 71 (162)
...++|+++|++|+|||||++++.+. .++..+ .++.........+..++....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998875 333222 112221222222333444578999999997 45
Q ss_pred cccchh-------hhhcCC-------------cEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 72 YHSLAP-------MYYRGA-------------AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 72 ~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
+..+.. .+++.. ++++++.+.+. .+|+.+. +..+... ....|+++|+||+|+...+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAI-HNKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHH-TTTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCCHH
Confidence 554443 444332 23444444322 1233333 1223333 2567999999999997654
Q ss_pred cCC--HHHHhhhcCCCCCCeeecccccc
Q 031263 132 KVT--AEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 132 ~~~--~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
.+. .++++..+...+++++++|+..+
T Consensus 172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 199 (301)
T 2qnr_A 172 ERERLKKRILDEIEEHNIKIYHLPDAES 199 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC----
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCCccc
Confidence 432 34556666667788888877665
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.63 E-value=4.5e-16 Score=116.99 Aligned_cols=121 Identities=16% Similarity=0.162 Sum_probs=71.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCc------ccee--------------------------------------
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE------STIG-------------------------------------- 44 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~------~~~~-------------------------------------- 44 (162)
...+|+|+|.+++|||||+|++++..+.+... |+..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999988742221 2100
Q ss_pred -----eEEEEEEEEEC-CeEEEEEEEeCCCcc-------------ccccchhhhhcCCcEEE-EEEECCChHHHHHHHHH
Q 031263 45 -----AAFFSQTLAVN-DATVKFEIWDTAGQE-------------RYHSLAPMYYRGAAAAI-IVYDITNQASFERAKKW 104 (162)
Q Consensus 45 -----~~~~~~~~~~~-~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~ 104 (162)
.......+.+. ....++.+|||||.. .+..+...|+...+.++ ++.+++... .. ..|
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~--~~-~~~ 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL--AN-SDA 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCG--GG-CHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCcc--ch-hHH
Confidence 00000001010 113579999999953 34456666776665444 455655421 11 122
Q ss_pred HHHHHHhCCCCCeEEEEEeCCCCcCccc
Q 031263 105 VQELQAQGNPNMVMALAGNKADLLDARK 132 (162)
Q Consensus 105 ~~~~~~~~~~~~piiiv~nK~D~~~~~~ 132 (162)
...+........|+++|+||+|+.+...
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~ 214 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEGT 214 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTTC
T ss_pred HHHHHHhCcCCCceEEEeccccccCcch
Confidence 2233333335789999999999976543
No 192
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.60 E-value=4e-15 Score=113.73 Aligned_cols=141 Identities=20% Similarity=0.197 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCc--cceeeEEEEEEEEECCeEEEEEEEeCCCccc----cccchhhh---hc
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQE--STIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPMY---YR 81 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~ 81 (162)
-.|+++|.+|+|||||++++.+........ .+...+ ...+..++ ...+.+||++|..+ +..+...+ +.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~--~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~e 234 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN--LGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIA 234 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCE--EEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecce--eeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHH
Confidence 358999999999999999999874321111 122222 22233332 25689999999732 22232222 45
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCcccCCHHHHhhhcCCCCCCeeecccccc
Q 031263 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 82 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
.++.++.++|++ +..+..+..|...+..... ...|.++++||+|+... ...++.+..+...+++++.+|+.+.
T Consensus 235 ra~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g 309 (416)
T 1udx_A 235 RTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTG 309 (416)
T ss_dssp SSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred HHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCc
Confidence 699999999998 5667788888777766531 35788999999998654 2233344445555777887776554
No 193
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.58 E-value=3.9e-15 Score=120.03 Aligned_cols=115 Identities=12% Similarity=0.061 Sum_probs=81.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCC------------------ccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ------------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 69 (162)
.+..+|+++|..++|||||++++++....... ...++.......+.. ..+.+++|||||+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~--~~~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF--RGHRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE--TTEEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee--CCEEEEEEeCCCc
Confidence 45689999999999999999999954322100 011222222222323 3478999999999
Q ss_pred cccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
.+|......+++.+|++++|+|+++..... ...++..+.. .++|+++++||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH---ccCCEEEEecCCchh
Confidence 999888889999999999999998754322 2344444443 368999999999986
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.56 E-value=1.9e-14 Score=108.03 Aligned_cols=83 Identities=22% Similarity=0.115 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCcc--ceeeEEEEEEEEECCe---------------EEEEEEEeCCCcccc
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES--TIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERY 72 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~ 72 (162)
.++|+++|.+|+|||||+|++++..+.....| |++.+.. .+.+++. ...+++||+||..++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 47899999999999999999999774322222 3332221 2223332 157999999998654
Q ss_pred c----cch---hhhhcCCcEEEEEEECCC
Q 031263 73 H----SLA---PMYYRGAAAAIIVYDITN 94 (162)
Q Consensus 73 ~----~~~---~~~~~~~~~~i~v~d~~~ 94 (162)
. .+. ..+++.+|++++|+|+++
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2 222 235789999999999986
No 195
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.53 E-value=8.1e-14 Score=110.07 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=83.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCC------------------CC----CCCccceeeEEEEEEEEECCeEEEEEEEe
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQ------------------FI----EFQESTIGAAFFSQTLAVNDATVKFEIWD 65 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 65 (162)
.+..+|+|+|..++|||||..+++... +. .+....+++......+.. +.+.++|+|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY--RDRVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE--TTEEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE--CCEEEEEEe
Confidence 467899999999999999999997311 00 011112222212222333 448899999
Q ss_pred CCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
|||+.+|.......++-+|++|+|+|+.+.-.-.....|... .. .++|.++++||+|+...+
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a-~~---~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVC-RM---RATPVMTFVNKMDREALH 168 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHH-HH---TTCCEEEEEECTTSCCCC
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHH-HH---hCCceEEEEecccchhcc
Confidence 999999999999999999999999999987554555556332 23 378999999999986654
No 196
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.47 E-value=3e-13 Score=102.06 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=78.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcccc----ccc---hhhhhcC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----HSL---APMYYRG 82 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~---~~~~~~~ 82 (162)
..+|+++|.||||||||+|++++........|..+.+.....+...+ .++++.|+||.-.- ... ....++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 46899999999999999999999876554445555555566666666 67899999995321 111 1233677
Q ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCCC
Q 031263 83 AAAAIIVYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADL 127 (162)
Q Consensus 83 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~ 127 (162)
+|++++|+|++++.. ........+.... -.+.|.+++.||.|.
T Consensus 150 ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 150 CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 999999999998732 2233333343322 145677888999997
No 197
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.47 E-value=4e-13 Score=109.11 Aligned_cols=127 Identities=20% Similarity=0.137 Sum_probs=84.8
Q ss_pred CCCCCCcccceEEEEEcCCCCCHHHHHHHHHhC--------CCCC----------CCccceeeEEEEEEEEEC-----Ce
Q 031263 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKG--------QFIE----------FQESTIGAAFFSQTLAVN-----DA 57 (162)
Q Consensus 1 m~~~~~~~~~~ki~viG~~~~GKssli~~~~~~--------~~~~----------~~~~~~~~~~~~~~~~~~-----~~ 57 (162)
|+.+.+-.+..||+|+|..++|||||..+++.. .... +....+++......+... +.
T Consensus 4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~ 83 (709)
T 4fn5_A 4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD 83 (709)
T ss_dssp --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence 555555567789999999999999999998731 1110 111122222222223222 23
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 58 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
.+.++++||||+.+|.......++-+|++|+|+|+...-.-.....|.... ++ ++|.+++.||+|+...+
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~-~~---~lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQAN-KY---GVPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH-HH---TCCEEEEEECSSSTTCC
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHH-Hc---CCCeEEEEccccccCcc
Confidence 689999999999999999999999999999999999865444444554433 22 67899999999986543
No 198
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.37 E-value=6.3e-13 Score=100.76 Aligned_cols=91 Identities=12% Similarity=0.028 Sum_probs=51.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCe---------------EEEEEEEeCCCcccc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERY 72 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~ 72 (162)
....+|+++|.+|+|||||+|++.+..+.....+..+.+.....+.+.+. ...+++||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 35589999999999999999999988654333333332222333333331 235999999997654
Q ss_pred cc-------chhhhhcCCcEEEEEEECCChHHH
Q 031263 73 HS-------LAPMYYRGAAAAIIVYDITNQASF 98 (162)
Q Consensus 73 ~~-------~~~~~~~~~~~~i~v~d~~~~~s~ 98 (162)
.. ....+++.+|++++|+|+++.+++
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC------
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 32 345678999999999999875543
No 199
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.37 E-value=6.1e-12 Score=102.15 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=82.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCcccee-----e--------------------------------------
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIG-----A-------------------------------------- 45 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~-----~-------------------------------------- 45 (162)
...+|+|+|..++|||||+|++++..+.+......+ .
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 457999999999999999999999876321110000 0
Q ss_pred --------EEEEEEEEECCeEEEEEEEeCCCccc-------------cccchhhhh-cCCcEEEEEEECCChHHHHHHHH
Q 031263 46 --------AFFSQTLAVNDATVKFEIWDTAGQER-------------YHSLAPMYY-RGAAAAIIVYDITNQASFERAKK 103 (162)
Q Consensus 46 --------~~~~~~~~~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~ 103 (162)
+.....+... ...++.++||||-.. ...+...++ ..+|++++|+|++.+..-.....
T Consensus 130 g~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0000011011 123578999999533 222333444 56899999999986422222222
Q ss_pred HHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhcC--CCCCCeeecccccccc
Q 031263 104 WVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSLC--PGKWPILYGNLCKNSN 159 (162)
Q Consensus 104 ~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~ 159 (162)
++..+ .....|+++|.||+|+..+........+.... ..+|..+...|++.+.
T Consensus 209 ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~ 263 (772)
T 3zvr_A 209 IAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDID 263 (772)
T ss_dssp HHHHH---CTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESS
T ss_pred HHHHH---HhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccc
Confidence 33333 23468999999999997654433332222111 1345444444555443
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.36 E-value=1.8e-12 Score=97.67 Aligned_cols=82 Identities=21% Similarity=0.162 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCc--cceeeEEEEEEEEECC-------------------eEEEEEEEeCCCc
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQE--STIGAAFFSQTLAVND-------------------ATVKFEIWDTAGQ 69 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~D~~g~ 69 (162)
++|+++|.+|+|||||+|++.+........ .|+..+.... .+.. ....+++||+||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 689999999999999999999864321111 1222222221 1211 2357999999998
Q ss_pred cccc----cch---hhhhcCCcEEEEEEECCC
Q 031263 70 ERYH----SLA---PMYYRGAAAAIIVYDITN 94 (162)
Q Consensus 70 ~~~~----~~~---~~~~~~~~~~i~v~d~~~ 94 (162)
.... .+. ...++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 6542 222 234789999999999985
No 201
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.36 E-value=2.2e-13 Score=95.61 Aligned_cols=137 Identities=14% Similarity=0.143 Sum_probs=76.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEE--------------EEEEEEE----------------CCeE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--------------FSQTLAV----------------NDAT 58 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~ 58 (162)
...+|+++|.+|+|||||++++............+..+. ....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457999999999999999999997532110111111000 0011111 0123
Q ss_pred EEEEEEeCCCccccccchhhh-hcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHH
Q 031263 59 VKFEIWDTAGQERYHSLAPMY-YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEA 137 (162)
Q Consensus 59 ~~~~~~D~~g~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~ 137 (162)
..+.+|||+|+.. .+.+ ....+.+++|+|+++... ....+.. . ...|+++|+||+|+...+....++
T Consensus 109 ~d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~--~~~~~~~---~---~~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGDD--VVEKHPE---I---FRVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTT--HHHHCHH---H---HHTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcch--hhhhhhh---h---hhcCCEEEEecccCCcchhhHHHH
Confidence 5688999998511 1111 124688999999886532 1111111 1 146789999999986544344455
Q ss_pred HhhhcCC--CCCCeeecccccc
Q 031263 138 RSTSLCP--GKWPILYGNLCKN 157 (162)
Q Consensus 138 ~~~~~~~--~~~~~~~~s~~~~ 157 (162)
....+.. ..++++++|+.++
T Consensus 177 ~~~~~~~~~~~~~i~~~Sa~~g 198 (221)
T 2wsm_A 177 MKADAKLINPRAKIIEMDLKTG 198 (221)
T ss_dssp HHHHHHHHCTTSEEEECBTTTT
T ss_pred HHHHHHHhCCCCeEEEeecCCC
Confidence 4444332 2456777666554
No 202
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.32 E-value=3.7e-15 Score=104.99 Aligned_cols=38 Identities=16% Similarity=0.334 Sum_probs=29.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeE
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAA 46 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~ 46 (162)
+..+|+++|.+|||||||++++....+...+.++++.+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d 74 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD 74 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 46899999999999999999999876554344444433
No 203
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.29 E-value=1.5e-12 Score=97.81 Aligned_cols=62 Identities=13% Similarity=0.008 Sum_probs=42.7
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 58 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
.+.+.+|||||..+ .....+..+|++++|+|....+.+..+..+ ....|+++|+||+|+...
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHH 232 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcCh
Confidence 36789999999432 233445889999999998865443222211 134589999999998643
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.29 E-value=3.2e-13 Score=108.46 Aligned_cols=118 Identities=16% Similarity=0.136 Sum_probs=81.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC--CCCC------C--C-c-----cceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG--QFIE------F--Q-E-----STIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~--~~~~------~--~-~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 73 (162)
..||+++|..++|||||..+++.. .... . + + ...|++..+....+..+.+.++++||||+.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 468999999999999999999841 1110 0 0 0 001122222333344455789999999999999
Q ss_pred cchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
......++-+|+.|+|+|+.+.-.-.....|.. +..+ ++|.+++.||+|+...+
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~~---~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRKM---GIPTIFFINKIDQNGID 135 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHHH---TCSCEECCEECCSSSCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHHc---CCCeEEEEeccccccCC
Confidence 999999999999999999998643333344433 3333 56889999999986544
No 205
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.15 E-value=4.5e-11 Score=87.97 Aligned_cols=86 Identities=15% Similarity=0.050 Sum_probs=65.7
Q ss_pred ccccccchhhhhcCCcEEEEEEECCChH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCC-HHHHhhhcCCCC
Q 031263 69 QERYHSLAPMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT-AEARSTSLCPGK 146 (162)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~-~~~~~~~~~~~~ 146 (162)
+++++.+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+.+.++ .++....+...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 6778888888999999999999999986 88888999987765 478999999999997654322 233344444456
Q ss_pred CCeeecccccc
Q 031263 147 WPILYGNLCKN 157 (162)
Q Consensus 147 ~~~~~~s~~~~ 157 (162)
++++++|+.++
T Consensus 143 ~~~~~~SA~~g 153 (302)
T 2yv5_A 143 YDVLKVSAKTG 153 (302)
T ss_dssp CEEEECCTTTC
T ss_pred CeEEEEECCCC
Confidence 77777776554
No 206
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.11 E-value=6.7e-12 Score=94.15 Aligned_cols=60 Identities=12% Similarity=0.004 Sum_probs=36.5
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 59 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
+.+.++||+|... ........+|.+++|+|++++.....+... + -..|.++|+||+|+..
T Consensus 167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~~---i-----l~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKRG---I-----IEMADLVAVTKSDGDL 226 (349)
T ss_dssp CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGG
T ss_pred CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHHH---H-----HhcCCEEEEeeecCCC
Confidence 5789999999532 124456789999999999875433222111 1 2457889999999864
No 207
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.10 E-value=4.7e-10 Score=80.45 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=42.3
Q ss_pred EEEEEEeCCCccccccchh------hhhcCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 59 VKFEIWDTAGQERYHSLAP------MYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 59 ~~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
+.+.+|||||......... ..+.. +++++++|... +..+.....+...... ..+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccc
Confidence 5799999999866533221 13455 78888888753 3333222222211111 23678999999999865
Q ss_pred cc
Q 031263 130 AR 131 (162)
Q Consensus 130 ~~ 131 (162)
..
T Consensus 186 ~~ 187 (262)
T 1yrb_A 186 EE 187 (262)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 208
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.03 E-value=1.3e-10 Score=86.82 Aligned_cols=62 Identities=18% Similarity=0.028 Sum_probs=39.0
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCc
Q 031263 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (162)
Q Consensus 58 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 130 (162)
.+.+.+|||||..+.. ......+|++++|+|.+..+.+..+... . .+.|.++|+||+|+.+.
T Consensus 148 ~~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~-----~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 148 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKG---L-----MEVADLIVINKDDGDNH 209 (341)
T ss_dssp TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHH---H-----HHHCSEEEECCCCTTCH
T ss_pred CCCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHHh---h-----hcccCEEEEECCCCCCh
Confidence 3679999999965433 2346889999999999765432211110 0 14578999999998654
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.03 E-value=1.1e-10 Score=80.93 Aligned_cols=88 Identities=6% Similarity=-0.063 Sum_probs=54.2
Q ss_pred CCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHH----HHhC-CCCCeEEEEEeCC-CCcCcccCCHHHHhh
Q 031263 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQG-NPNMVMALAGNKA-DLLDARKVTAEARST 140 (162)
Q Consensus 67 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~----~~~~-~~~~piiiv~nK~-D~~~~~~~~~~~~~~ 140 (162)
+|++.++.+|..||.++|++|||+|.+|++.++ .+..+..+ .... ..++|++|++||. |+.++ .+..+..+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHH
Confidence 378899999999999999999999999986554 33322222 2221 2678999999995 77543 34444332
Q ss_pred hc----CCCCCCeeecccccc
Q 031263 141 SL----CPGKWPILYGNLCKN 157 (162)
Q Consensus 141 ~~----~~~~~~~~~~s~~~~ 157 (162)
.+ ..+.|.+..+|+.+.
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TG 207 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETL 207 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTC
T ss_pred HcCCcCCCCCEEEEEeECCCC
Confidence 22 147888888766554
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.99 E-value=1.3e-09 Score=82.74 Aligned_cols=87 Identities=18% Similarity=0.114 Sum_probs=57.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCC-CCCCccceeeEEEEEEEEECCe---------------EEEEEEEeCCCccc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQER 71 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~ 71 (162)
.+..++.++|.+|+|||||+|++.+... .....|..+.+.....+.+.+. ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4457999999999999999999999765 3333332222222223334431 14689999999532
Q ss_pred -------cccchhhhhcCCcEEEEEEECCC
Q 031263 72 -------YHSLAPMYYRGAAAAIIVYDITN 94 (162)
Q Consensus 72 -------~~~~~~~~~~~~~~~i~v~d~~~ 94 (162)
+.......++.+|+++.|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22233455788999999999874
No 211
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.93 E-value=6.2e-09 Score=79.65 Aligned_cols=139 Identities=14% Similarity=0.171 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCC----ccceeeEEEEEEEEECCeEEEEEEEeCCCcccc--------------
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-------------- 72 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------------- 72 (162)
++++|+|.+|+|||||+|.+.+..+.... .+..............+-...++++|++|....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 57999999999999999999987543211 111111111122222233347899999874321
Q ss_pred ccchhhh-------------hcCC--cE-EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCH-
Q 031263 73 HSLAPMY-------------YRGA--AA-AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA- 135 (162)
Q Consensus 73 ~~~~~~~-------------~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~- 135 (162)
...+..+ ..++ |. +.|+.|...+ +...+ +..+.... ..+|+|+|.||+|...+..+..
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~D--ieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLD--LVTMKKLD-SKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHH--HHHHHHTC-SCSEEEEEESCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHH--HHHHHHHh-hCCCEEEEEcchhccchHHHHHH
Confidence 0000011 0112 23 4455555432 22222 12222222 5789999999999865443321
Q ss_pred -HHHhhhcCCCCCCeeeccc
Q 031263 136 -EARSTSLCPGKWPILYGNL 154 (162)
Q Consensus 136 -~~~~~~~~~~~~~~~~~s~ 154 (162)
...+..+...+.++++.|.
T Consensus 198 ~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 198 KIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHcCCcEEecCC
Confidence 2233345666777777664
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.83 E-value=4.9e-10 Score=84.59 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=66.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC------CCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc-------h
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG------QFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-------A 76 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~ 76 (162)
..+|+++|.+|+|||||+|++++. .......+..+.+ ........ .+.++||||......+ .
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLES---GATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECST---TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHH
Confidence 457999999999999999999986 2221122222222 22333332 2789999995322211 1
Q ss_pred hhhh---cCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCccc
Q 031263 77 PMYY---RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (162)
Q Consensus 77 ~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~ 132 (162)
...+ +..+.++++++....-.+..+.. +......+.|++++.||.|......
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~ 291 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTK 291 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCccccccc
Confidence 1122 66889999998743211111110 1111235789999999999865433
No 213
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.83 E-value=2.5e-09 Score=77.52 Aligned_cols=90 Identities=6% Similarity=-0.063 Sum_probs=59.1
Q ss_pred CCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHH---HHHHHHhC-CCCCeEEEEEeC-CCCcCcccCCHHHHhh
Q 031263 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW---VQELQAQG-NPNMVMALAGNK-ADLLDARKVTAEARST 140 (162)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~---~~~~~~~~-~~~~piiiv~nK-~D~~~~~~~~~~~~~~ 140 (162)
.+||+.++..|..||.++|++|+|+|.+|++.++...+. ...+.... ..++|++|++|| .|+.++. +..+..+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Am--s~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM--PCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBC--CHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCC--CHHHHHH
Confidence 457889999999999999999999999998765522222 12222221 368899999996 6885443 3344332
Q ss_pred hc----CCCCCCeeecccccc
Q 031263 141 SL----CPGKWPILYGNLCKN 157 (162)
Q Consensus 141 ~~----~~~~~~~~~~s~~~~ 157 (162)
.+ ..+.|.+..+|+.+.
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tG 292 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETL 292 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTC
T ss_pred HcCCccCCCcEEEEecccCCC
Confidence 22 147888888776554
No 214
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.82 E-value=4.6e-09 Score=78.35 Aligned_cols=61 Identities=16% Similarity=0.054 Sum_probs=36.3
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcC
Q 031263 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (162)
Q Consensus 58 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 129 (162)
...+.++||+|..+-. ......+|.+++++|....+....+..++ . ..+.+++.||+|+..
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGD 207 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTC
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccC
Confidence 3678999999964321 23457899999999987543322121111 1 234567779999743
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.80 E-value=5.3e-10 Score=84.36 Aligned_cols=115 Identities=11% Similarity=0.139 Sum_probs=64.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC-----CCccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc----chhhh-
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE-----FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS----LAPMY- 79 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~~~~~- 79 (162)
..+|+++|.+|+|||||+|++++..... ...+..+.+.......... .+.++||||...... +....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 4689999999999999999999863211 1112222222233333333 278999999633221 11111
Q ss_pred -----hcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcc
Q 031263 80 -----YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (162)
Q Consensus 80 -----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 131 (162)
.+..+..+++++......+..+.. +......+.|++++.||.|.....
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEE
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccc
Confidence 255778888887642111111110 111123578999999999986543
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.78 E-value=6.1e-09 Score=75.42 Aligned_cols=25 Identities=36% Similarity=0.623 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++++|++|+|||||+|.+.+..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999999754
No 217
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.67 E-value=2.3e-08 Score=72.80 Aligned_cols=59 Identities=24% Similarity=0.307 Sum_probs=36.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 70 (162)
...++++++|.+|+|||||+|++.+...... .+..+.+.....+.... .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeec-CCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 4568999999999999999999998764432 12222222222222322 57899999964
No 218
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.64 E-value=1e-08 Score=73.97 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 71 (162)
++++++|.+|+|||||+|++.+..... ..++.+.+.....+..+ ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 699999999999999999999876543 22333333222222222 2578999999653
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.54 E-value=4.9e-08 Score=76.30 Aligned_cols=115 Identities=12% Similarity=0.140 Sum_probs=63.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHH------hCCCCC----CCccc-----------eeeEEEEEEEE-------------
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFV------KGQFIE----FQEST-----------IGAAFFSQTLA------------- 53 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~------~~~~~~----~~~~~-----------~~~~~~~~~~~------------- 53 (162)
.+...|+++|.+|+||||+++++. +.+..- .+.+. .+..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345789999999999999999998 332110 00010 01111110000
Q ss_pred ECCeEEEEEEEeCCCcccccc-chh---hh--hcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeE-EEEEeCCC
Q 031263 54 VNDATVKFEIWDTAGQERYHS-LAP---MY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVM-ALAGNKAD 126 (162)
Q Consensus 54 ~~~~~~~~~~~D~~g~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D 126 (162)
.....+.+.|+||||...... +.. .. ...+|.+++|+|++..... ......+.. .+|+ ++|.||+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~----~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD----KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH----HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh----hcCceEEEEeCCc
Confidence 000236789999999753211 111 11 2268999999999875321 112222222 2565 88899999
Q ss_pred CcC
Q 031263 127 LLD 129 (162)
Q Consensus 127 ~~~ 129 (162)
...
T Consensus 252 ~~~ 254 (504)
T 2j37_W 252 GHA 254 (504)
T ss_dssp SCC
T ss_pred ccc
Confidence 863
No 220
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.28 E-value=4.7e-08 Score=75.95 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=61.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccceeeEEEEEEEEECCeEEEEEEEeCCCcc--ccccch--------h
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE--RYHSLA--------P 77 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--~~~~~~--------~ 77 (162)
....+|+++|.+|+||||+.+++...-... ..++...+.........+......+||..|.+ +.+..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999987542111 11222211000000011111334678998873 233333 4
Q ss_pred hhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHh
Q 031263 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111 (162)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 111 (162)
.++...++.++|+|.++. +.+....|+..+...
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 566667888999999987 456667787777665
No 221
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.22 E-value=1.1e-06 Score=70.01 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=39.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhCCCC-CCC----ccceeeEEEEEEEEE-CCeEEEEEEEeCCCccc
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQ----ESTIGAAFFSQTLAV-NDATVKFEIWDTAGQER 71 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~~~~-~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~ 71 (162)
.+.++|+|+|.+++|||||+|++++.... ... ..|.+.- .+.... ......+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~--~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIW--MWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEE--EEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEE--EeecccccCCCceEEEecCCCcCc
Confidence 45689999999999999999999987632 111 1222221 111111 12335789999999643
No 222
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.22 E-value=9.9e-07 Score=66.52 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=56.4
Q ss_pred CccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhh----cC
Q 031263 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTS----LC 143 (162)
Q Consensus 68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~----~~ 143 (162)
..++|......+++.++++++|+|++++. ..|...+.+.. .+.|+++|+||+|+.... ...++.+.+ +.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 45778888889999999999999999863 45766666653 478999999999996533 222222222 33
Q ss_pred CCCC---Ceeecccccc
Q 031263 144 PGKW---PILYGNLCKN 157 (162)
Q Consensus 144 ~~~~---~~~~~s~~~~ 157 (162)
..++ +++.+|+.++
T Consensus 128 ~~g~~~~~v~~iSA~~g 144 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKG 144 (368)
T ss_dssp HTTCCCSEEEECCTTTC
T ss_pred HcCCCcccEEEEeCCCC
Confidence 3444 5666665543
No 223
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.09 E-value=2.6e-05 Score=59.59 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=58.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCccce-eeEE--EEEEEEECCeEEEEEEEeCCCccccccchhhh-----hc
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTI-GAAF--FSQTLAVNDATVKFEIWDTAGQERYHSLAPMY-----YR 81 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-----~~ 81 (162)
...++++|++|+|||||+|.+.+-..+....-.. +.+. ...... ......+.+||++|...-......+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 4589999999999999999999843322111111 1000 001111 1111257899999853211111111 33
Q ss_pred CCcEEEEEEECC--ChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 82 GAAAAIIVYDIT--NQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 82 ~~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
..+.+++ ++.. .+... .+...+.. .+.|+++|.||.|+.
T Consensus 148 ~~~~~~~-lS~G~~~kqrv----~la~aL~~---~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 148 EYDFFII-ISATRFKKNDI----DIAKAISM---MKKEFYFVRTKVDSD 188 (413)
T ss_dssp GCSEEEE-EESSCCCHHHH----HHHHHHHH---TTCEEEEEECCHHHH
T ss_pred ccCCeEE-eCCCCccHHHH----HHHHHHHh---cCCCeEEEEecCccc
Confidence 3455554 7765 33221 12222222 257999999999973
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.98 E-value=5.4e-06 Score=60.27 Aligned_cols=85 Identities=15% Similarity=-0.038 Sum_probs=51.8
Q ss_pred EEeCCCcc-ccccchhhhhcCCcEEEEEEECCChHHHH--HHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHh
Q 031263 63 IWDTAGQE-RYHSLAPMYYRGAAAAIIVYDITNQASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARS 139 (162)
Q Consensus 63 ~~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~ 139 (162)
+-..||+. .........+..+|+++.|+|+.++.+.. .+..|+ .+.|.++|.||+|+..... .+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 34578874 33444456688899999999999986654 344442 4789999999999975321 12223
Q ss_pred hhcCCCCCCeeecccccc
Q 031263 140 TSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 140 ~~~~~~~~~~~~~s~~~~ 157 (162)
.++...+++++.+|+.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~ 90 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNG 90 (282)
T ss_dssp HHHHTTTCCEEECCTTTC
T ss_pred HHHHhcCCcEEEEECCCc
Confidence 344444667777666543
No 225
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.97 E-value=1.8e-06 Score=65.09 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=54.5
Q ss_pred CccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhh----hcC
Q 031263 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARST----SLC 143 (162)
Q Consensus 68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~----~~~ 143 (162)
.++.|......+++.++++++|+|++++.+ .|...+.+.. .+.|+++|+||+|+.... ...+..+. .+.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 467888888888899999999999999753 4555555543 478999999999996532 22222222 234
Q ss_pred CCCC---Ceeecccccc
Q 031263 144 PGKW---PILYGNLCKN 157 (162)
Q Consensus 144 ~~~~---~~~~~s~~~~ 157 (162)
..++ .++.+|+.++
T Consensus 130 ~~g~~~~~v~~iSA~~g 146 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKG 146 (369)
T ss_dssp TTTCCCSEEEECBTTTT
T ss_pred HcCCCcccEEEEECCCC
Confidence 4454 4566555443
No 226
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.94 E-value=2e-05 Score=63.16 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.|+|+|+.|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999864
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.87 E-value=1.5e-05 Score=61.27 Aligned_cols=112 Identities=16% Similarity=0.158 Sum_probs=60.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC------CCC----CCCcc-----------ceeeEEEEEE--------E--E--ECC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG------QFI----EFQES-----------TIGAAFFSQT--------L--A--VND 56 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~------~~~----~~~~~-----------~~~~~~~~~~--------~--~--~~~ 56 (162)
...|+++|.+|+||||+++.+... ... ..+.+ ..+....... + . ...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 467999999999999999988762 110 00000 0000000000 0 0 001
Q ss_pred eEEEEEEEeCCCccccc-----cch-hhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC-e-EEEEEeCCCCc
Q 031263 57 ATVKFEIWDTAGQERYH-----SLA-PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNM-V-MALAGNKADLL 128 (162)
Q Consensus 57 ~~~~~~~~D~~g~~~~~-----~~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-iiiv~nK~D~~ 128 (162)
..+.+.++||+|..... .+. ...+..+|.+++|+|++.... .......+ . ... | ..+|.||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~-~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---K-EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---H-TTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---h-hcccCCeEEEEeCCCCc
Confidence 34678999999965421 110 011235899999999876531 11122222 1 234 4 88999999974
No 228
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.85 E-value=4.2e-05 Score=58.89 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=71.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh------CCCC----CCCcc-----------ceeeEEEEEEEEEC------------
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK------GQFI----EFQES-----------TIGAAFFSQTLAVN------------ 55 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~------~~~~----~~~~~-----------~~~~~~~~~~~~~~------------ 55 (162)
+...|+++|.+|+||||++..+.. .+.. +.+.+ ..+..........+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999988873 1110 00100 11111111000000
Q ss_pred -CeEEEEEEEeCCCcccccc-----chh-hhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 56 -DATVKFEIWDTAGQERYHS-----LAP-MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 56 -~~~~~~~~~D~~g~~~~~~-----~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
...+.+.++||+|...... +.. .....+|.+++|+|++..... ......+... -.+..+|.||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~---~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA---TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS---CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh---CCCeEEEEECCCCc
Confidence 0126789999999533221 111 113357899999999864322 1222333322 23467888999985
Q ss_pred CcccCCHHHHhhhcCCCCCCeeeccc
Q 031263 129 DARKVTAEARSTSLCPGKWPILYGNL 154 (162)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~s~ 154 (162)
..-. .+.......+.|+.+.+.
T Consensus 253 ~~gG----~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 253 AKGG----GALSAVAATGAPIKFIGT 274 (443)
T ss_dssp SSHH----HHHHHHHTTCCCEEEEEC
T ss_pred cccc----HHHHHHHHHCCCEEEEEc
Confidence 4221 122222234667766654
No 229
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.51 E-value=0.00011 Score=56.74 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=22.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.+..-|.|+|.+++|||+|+|++++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 35577899999999999999999863
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.45 E-value=0.00022 Score=52.19 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=46.7
Q ss_pred EEEEEEEeCCCccc--ccc-chh-----hhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCCCCc
Q 031263 58 TVKFEIWDTAGQER--YHS-LAP-----MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLL 128 (162)
Q Consensus 58 ~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~ 128 (162)
.+.+.++||||... ... +.. .....+|.+++|+|...... .......+.. ..+ ..+|.||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 35789999999765 211 110 12446899999999875321 1122222222 244 67888999974
Q ss_pred CcccCCHHHHhhhcCCCCCCeeecc
Q 031263 129 DARKVTAEARSTSLCPGKWPILYGN 153 (162)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~s 153 (162)
.. ...+.......+.|+.+..
T Consensus 253 ~~----~g~~~~~~~~~~~pi~~i~ 273 (297)
T 1j8m_F 253 AK----GGGALSAVAATGATIKFIG 273 (297)
T ss_dssp TT----HHHHHHHHHTTTCCEEEEE
T ss_pred cc----hHHHHHHHHHHCcCEEEEe
Confidence 32 1222222333456666654
No 231
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.39 E-value=0.00012 Score=49.45 Aligned_cols=22 Identities=36% Similarity=0.761 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988864
No 232
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.28 E-value=0.00017 Score=48.60 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
--++++|++|+|||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999874
No 233
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.23 E-value=0.00021 Score=49.02 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~ 32 (162)
-.++++|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999886
No 234
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.16 E-value=0.00024 Score=52.15 Aligned_cols=83 Identities=11% Similarity=0.126 Sum_probs=50.1
Q ss_pred ccccchhhhhcCCcEEEEEEECCChHH-HHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccC--CHHHHhhhcCCCCC
Q 031263 71 RYHSLAPMYYRGAAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--TAEARSTSLCPGKW 147 (162)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~ 147 (162)
+.+.+.+..+.++|.+++|+|+.+|.. ...+..++.... ..++|.+||.||+|+...... ..++........++
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~ 151 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGY 151 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCC
Confidence 334555556888999999999997643 233344433222 247788999999999764320 01222333333466
Q ss_pred Ceeeccccc
Q 031263 148 PILYGNLCK 156 (162)
Q Consensus 148 ~~~~~s~~~ 156 (162)
+++.+|+.+
T Consensus 152 ~v~~~sa~~ 160 (307)
T 1t9h_A 152 DVYLTSSKD 160 (307)
T ss_dssp CEEECCHHH
T ss_pred eEEEEecCC
Confidence 777766544
No 235
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.13 E-value=0.00029 Score=47.69 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~ 33 (162)
++++|++|+|||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999864
No 236
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.11 E-value=0.00031 Score=48.36 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
--++++|++|+|||||++.+.+-.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358899999999999999998753
No 237
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.11 E-value=0.00032 Score=47.88 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
-++++|++|+|||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999875
No 238
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.09 E-value=0.00034 Score=48.87 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
--++++|++|+|||||++.+.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999998754
No 239
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.06 E-value=0.00046 Score=46.58 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.-.|+++|.+|+||||+++.+.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346999999999999999999875
No 240
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.05 E-value=0.00038 Score=48.43 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
-.++++|++|+|||||++.+.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998743
No 241
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.05 E-value=0.00041 Score=47.70 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.--|+++|++|+|||||++.+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999864
No 242
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.03 E-value=0.00048 Score=47.42 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~ 32 (162)
.+...|+|+|++|+|||||++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988775
No 243
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.03 E-value=0.00031 Score=46.99 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 031263 12 KLVLLGDVGAGKSSLVLRFV 31 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~ 31 (162)
-++++|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999543
No 244
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.01 E-value=0.0007 Score=45.07 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~ 32 (162)
+.-.|+++|.+|+||||+.+.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 245
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.99 E-value=0.00049 Score=45.58 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
--++++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998864
No 246
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.98 E-value=0.00052 Score=46.75 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~ 33 (162)
|+|+|++|+||+||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999864
No 247
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.96 E-value=0.00052 Score=47.31 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
--|+++|++|+||||+++.+....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458999999999999999998753
No 248
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.90 E-value=0.00053 Score=48.37 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4799999999999999988865
No 249
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.90 E-value=0.00062 Score=51.04 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQF 35 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~ 35 (162)
.++++|++|+|||||+|.+.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999997654
No 250
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.88 E-value=0.00076 Score=46.32 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=21.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~ 32 (162)
.+...|+++|..|+|||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998876
No 251
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.86 E-value=0.00072 Score=46.36 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
..-|+|+|.+||||||+.+.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999998764
No 252
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.84 E-value=0.00074 Score=47.81 Aligned_cols=23 Identities=39% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 253
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.84 E-value=0.00079 Score=44.66 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
..|+++|.+|+||||+.+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988763
No 254
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.84 E-value=0.00077 Score=45.51 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
-++++|.+|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 255
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.83 E-value=0.00076 Score=46.00 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
-.|+++|.+|+||||+++.+.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998754
No 256
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.83 E-value=0.001 Score=44.23 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~ 32 (162)
..|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 257
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.82 E-value=0.00062 Score=47.64 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998865
No 258
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.80 E-value=0.00079 Score=45.92 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
+++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999988763
No 259
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.78 E-value=0.001 Score=43.97 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.|+++|.+|+||||+.+.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
No 260
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.78 E-value=0.00091 Score=45.71 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
.-.|+++|.+|+||||+++.+.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998875
No 261
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.77 E-value=0.00077 Score=48.33 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
-++++|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998875
No 262
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.77 E-value=0.00097 Score=47.06 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFV 31 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~ 31 (162)
.-.|+++|.+|+||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999988
No 263
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.76 E-value=0.00082 Score=46.77 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998875
No 264
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.75 E-value=0.0008 Score=48.62 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998875
No 265
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.74 E-value=0.00095 Score=44.02 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 031263 12 KLVLLGDVGAGKSSLVLRF 30 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~ 30 (162)
-|++.|.+|+||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 266
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.74 E-value=0.00093 Score=47.17 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998875
No 267
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.73 E-value=0.00084 Score=47.97 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 268
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.73 E-value=0.00031 Score=50.43 Aligned_cols=77 Identities=10% Similarity=0.002 Sum_probs=44.4
Q ss_pred CCCcccc-ccchhhhhcCCcEEEEEEECCChHHHHH--HHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCCHHHHhhhc
Q 031263 66 TAGQERY-HSLAPMYYRGAAAAIIVYDITNQASFER--AKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEARSTSL 142 (162)
Q Consensus 66 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~ 142 (162)
.||+... .......+..+|+++.|+|+.++.+... +. ++ +.|.++|.||+|+.+.... ++...++
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~~~~--~~~~~~~ 71 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADEKTT--KKWVEFF 71 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCHHHH--HHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCHHHH--HHHHHHH
Confidence 4665432 2344566788999999999998865432 12 21 7799999999999753221 2222333
Q ss_pred CCCCCCeeecccc
Q 031263 143 CPGKWPILYGNLC 155 (162)
Q Consensus 143 ~~~~~~~~~~s~~ 155 (162)
...++++ .+|+.
T Consensus 72 ~~~g~~v-~iSa~ 83 (262)
T 3cnl_A 72 KKQGKRV-ITTHK 83 (262)
T ss_dssp HHTTCCE-EECCT
T ss_pred HHcCCeE-EEECC
Confidence 3345566 54443
No 269
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.72 E-value=0.0011 Score=44.63 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
..-++++|.+|+|||||++++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 456899999999999999999864
No 270
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.72 E-value=0.001 Score=47.16 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998875
No 271
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.71 E-value=0.00086 Score=48.22 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998753
No 272
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.71 E-value=0.001 Score=47.62 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
=.++++|++|+|||||++.+.+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 46899999999999999998863
No 273
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.71 E-value=0.00093 Score=46.90 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998875
No 274
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.71 E-value=0.001 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998875
No 275
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.70 E-value=0.0011 Score=47.26 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999975
No 276
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.70 E-value=0.0011 Score=48.44 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQF 35 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~~ 35 (162)
-.++++|++|+|||||+|.+.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3579999999999999999997643
No 277
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.70 E-value=0.00093 Score=47.95 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999998875
No 278
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.68 E-value=0.0011 Score=47.62 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999985
No 279
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.68 E-value=0.0011 Score=44.49 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.-.++++|++|+|||+|++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988764
No 280
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.68 E-value=0.00097 Score=47.14 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998875
No 281
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.68 E-value=0.0016 Score=44.33 Aligned_cols=26 Identities=27% Similarity=0.606 Sum_probs=22.0
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHh
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~ 32 (162)
......|+|.|.+|+||||+.+.+..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999998865
No 282
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.68 E-value=0.00082 Score=46.53 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999875
No 283
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.68 E-value=0.0011 Score=48.55 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
-.++++|++|+|||||+|.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 468999999999999999999 53
No 284
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.67 E-value=0.001 Score=47.60 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988753
No 285
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.67 E-value=0.0012 Score=48.42 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.=.++|+|++|+|||||++.+.+-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 347899999999999999988863
No 286
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.67 E-value=0.002 Score=43.88 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~ 32 (162)
.....|++.|.+|+||||+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999988874
No 287
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.67 E-value=0.0012 Score=45.03 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
...|+|+|.+|+||||+.+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
No 288
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.67 E-value=0.0015 Score=45.25 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.0
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHh
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~ 32 (162)
+.+..+|+|+|.+|+||||+.+.+..
T Consensus 2 ~~~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 2 NSKKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GGGCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999988864
No 289
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.66 E-value=0.001 Score=47.32 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998875
No 290
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.66 E-value=0.017 Score=39.65 Aligned_cols=66 Identities=14% Similarity=0.047 Sum_probs=47.6
Q ss_pred EEEEEEEeCCCc-cccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCc
Q 031263 58 TVKFEIWDTAGQ-ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (162)
Q Consensus 58 ~~~~~~~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 128 (162)
.+.+.++|+|+. .. ......+..+|.+++++..+ ..++..+...++.+.... +.++.+|.|+.|..
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPY 133 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCT
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCc
Confidence 367899999876 32 23345567899999888754 566777777777776643 45688999999964
No 291
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.65 E-value=0.0012 Score=46.27 Aligned_cols=22 Identities=27% Similarity=0.706 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFV 31 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~ 31 (162)
-=-++++|++|+|||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3458999999999999999887
No 292
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.63 E-value=0.0012 Score=47.27 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999998875
No 293
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.63 E-value=0.0015 Score=44.37 Aligned_cols=21 Identities=43% Similarity=0.756 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
.|++.|.+|+||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998875
No 294
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.62 E-value=0.0019 Score=44.99 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=18.3
Q ss_pred ceE-EEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAK-LVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~k-i~viG~~~~GKssli~~~~~ 32 (162)
..| |+++|+|||||+|....+..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344 56789999999999887764
No 295
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.62 E-value=0.0011 Score=47.73 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998875
No 296
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.62 E-value=0.0013 Score=47.67 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988753
No 297
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.61 E-value=0.0017 Score=44.30 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
.-.|+++|.+|+||||+.+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998874
No 298
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.60 E-value=0.0012 Score=45.62 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
-=-++++|++|+|||||++.+.+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999874
No 299
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.60 E-value=0.0011 Score=49.62 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.-+++|+|.+|+|||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998874
No 300
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.59 E-value=0.0015 Score=43.46 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
.-|++.|.+|+||||+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998863
No 301
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.59 E-value=0.0014 Score=44.68 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.--|+++|.+|+||||+.+.+.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999888753
No 302
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.59 E-value=0.0017 Score=44.89 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~ 32 (162)
+...|+++|.+|+||||+.+.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999988865
No 303
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.59 E-value=0.0012 Score=47.06 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988753
No 304
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.59 E-value=0.00032 Score=51.50 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
-.++++|++|+|||||+|.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999998753
No 305
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.59 E-value=0.0016 Score=48.98 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHH
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFV 31 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~ 31 (162)
++..||+++|.+++|||||++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 457999999999999999998764
No 306
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.58 E-value=0.0017 Score=43.65 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
...|++.|.+|+||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
No 307
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.58 E-value=0.0015 Score=43.84 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
.|+|.|.+|+||||+.+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988865
No 308
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.58 E-value=0.0012 Score=47.35 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998875
No 309
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.58 E-value=0.0018 Score=44.83 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~ 32 (162)
..|+++|.+|+||||+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 310
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.57 E-value=0.0016 Score=44.47 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~ 32 (162)
.+|+++|.+|+||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 311
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.57 E-value=0.0017 Score=44.72 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 312
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.56 E-value=0.0022 Score=43.89 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
++...|+++|.+|+||||+.+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44578999999999999999998864
No 313
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.55 E-value=0.0047 Score=46.29 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=43.5
Q ss_pred hcCCcEEEEEEECCChH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCcccCC-HHHHhhhcCCCCCCeeecccccc
Q 031263 80 YRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT-AEARSTSLCPGKWPILYGNLCKN 157 (162)
Q Consensus 80 ~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~ 157 (162)
..++|.+++|.+. +|. +...+..++-..... ++|.+||.||+|+....... .++........+++++.+|+.+.
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 5678999988664 453 333344554443333 56779999999997543210 11222334456788888776543
No 314
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.54 E-value=0.0018 Score=44.59 Aligned_cols=21 Identities=48% Similarity=0.621 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
+|+|+|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 315
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.53 E-value=0.0009 Score=46.76 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=15.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHH-hC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFV-KG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~-~~ 33 (162)
--++++|++|+||||+++.+. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999998 54
No 316
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.53 E-value=0.0017 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~ 32 (162)
+...|+|+|.+|+||||+.+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998874
No 317
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.53 E-value=0.0016 Score=46.75 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998764
No 318
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.52 E-value=0.0028 Score=42.63 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~ 32 (162)
.+...|+++|.+|+||||+.+.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3457799999999999999998865
No 319
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.52 E-value=0.0022 Score=45.30 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~ 32 (162)
+..+|+++|.+|+||||+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998874
No 320
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.50 E-value=0.0021 Score=43.06 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
...|+++|.+|+||||+.+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 321
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.50 E-value=0.0021 Score=43.09 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~ 32 (162)
..|++.|.+|+||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988764
No 322
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.50 E-value=0.0025 Score=42.89 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+..+|+++|.+|+||||+.+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999988754
No 323
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.50 E-value=0.0024 Score=46.97 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.4
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHh
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~ 32 (162)
.....-|+|+|++|+|||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34567899999999999999998876
No 324
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.49 E-value=0.0023 Score=42.91 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
...|+++|.+|+||||+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 325
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.47 E-value=0.0025 Score=43.52 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
...|++.|.+|+||||+.+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 326
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.46 E-value=0.0025 Score=42.85 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
...|++.|.+|+||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988764
No 327
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.45 E-value=0.0025 Score=43.58 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~ 32 (162)
..|+++|.+|+||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 328
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.44 E-value=0.0018 Score=44.86 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=20.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~ 32 (162)
....|+|+|.+|+||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 329
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.44 E-value=0.0017 Score=48.67 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
-++++|++|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999754
No 330
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.44 E-value=0.0031 Score=43.10 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~ 32 (162)
+...|++.|.+|+||||+.+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999998874
No 331
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.43 E-value=0.0026 Score=44.89 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~ 32 (162)
+..-|.++|+.|+|||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998876
No 332
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.42 E-value=0.0019 Score=48.36 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|++|+|||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999998863
No 333
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.42 E-value=0.00089 Score=44.92 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++|+|.+|+|||||++.+.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998864
No 334
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.41 E-value=0.002 Score=48.22 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
-++++|++|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998753
No 335
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.39 E-value=0.0033 Score=45.73 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=21.7
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHh
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~ 32 (162)
..+...|+|.|.+|+|||||.+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999987653
No 336
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.38 E-value=0.0022 Score=46.21 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~ 33 (162)
++++|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 337
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.38 E-value=0.0028 Score=44.30 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~ 32 (162)
...+|+|+|.+|+||||+.+.+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999998864
No 338
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.38 E-value=0.0019 Score=46.98 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5799999999999999998875
No 339
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.37 E-value=0.0028 Score=45.97 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~ 32 (162)
...-|++.|.+|+||||+.+++..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999975
No 340
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.37 E-value=0.0032 Score=43.03 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=21.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~ 32 (162)
.+..-|+++|.+|+||||+++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457799999999999999998875
No 341
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.37 E-value=0.0022 Score=48.10 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998753
No 342
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.37 E-value=0.0032 Score=42.22 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
...|++.|.+|+||||+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988864
No 343
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.37 E-value=0.0023 Score=48.13 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
-++++|++|+|||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999988753
No 344
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.37 E-value=0.0022 Score=48.09 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999998753
No 345
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.36 E-value=0.0028 Score=42.12 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999888764
No 346
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.35 E-value=0.0031 Score=42.20 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
..-+.++|.+|+|||||+.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999886
No 347
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.35 E-value=0.0024 Score=42.51 Aligned_cols=21 Identities=38% Similarity=0.687 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
+|+++|.+|+||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988764
No 348
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.35 E-value=0.0025 Score=43.93 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
+|+|.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998865
No 349
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.34 E-value=0.0023 Score=48.31 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999998754
No 350
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.34 E-value=0.0025 Score=45.05 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|++|+|||+|++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999864
No 351
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.33 E-value=0.0024 Score=48.15 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999998754
No 352
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.32 E-value=0.003 Score=42.60 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
...|++.|.+|+||||+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988864
No 353
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.32 E-value=0.0025 Score=48.05 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
-++++|++|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999998753
No 354
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.31 E-value=0.003 Score=42.20 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
...|+++|.+|+||||+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 355
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.31 E-value=0.0037 Score=46.18 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~ 32 (162)
..++-|.++|++|+|||||++.+.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988754
No 356
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.31 E-value=0.0036 Score=42.52 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
...|++.|.+|+||||+.+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999998864
No 357
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.30 E-value=0.0017 Score=42.39 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
-.++++|++|+|||+|++.+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999998874
No 358
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.30 E-value=0.0014 Score=48.03 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
=.++++|+.|+|||||++.+.+-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 36899999999999999988764
No 359
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.29 E-value=0.0035 Score=45.90 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~ 32 (162)
....-|+|+|..|+|||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998876
No 360
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.28 E-value=0.0034 Score=41.30 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
+|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 361
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.26 E-value=0.0028 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
.--++++|+.|+||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999998875
No 362
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.24 E-value=0.0035 Score=43.30 Aligned_cols=21 Identities=48% Similarity=0.675 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
+|+++|+|||||+|...++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988874
No 363
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.24 E-value=0.003 Score=47.52 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
=.++++|++|+||||+++.+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999998863
No 364
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.23 E-value=0.0025 Score=47.77 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
-.++++|++|+|||||++.+.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999875
No 365
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.23 E-value=0.0037 Score=42.34 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+...|++.|.+|+||||+.+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999988865
No 366
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.22 E-value=0.0035 Score=42.89 Aligned_cols=23 Identities=39% Similarity=0.411 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
...|++.|.+|+||||+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 367
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.22 E-value=0.0031 Score=43.51 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~ 32 (162)
--++++|++|+|||||++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4588999999999999998884
No 368
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.22 E-value=0.003 Score=42.66 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~ 32 (162)
+...|++.|.+|+||||+.+.+..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988865
No 369
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.21 E-value=0.0048 Score=45.16 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
.-.|+++|++|+||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999998874
No 370
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.21 E-value=0.035 Score=42.86 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=38.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHh------------------CCCCC---CCccceeeEEEEEEE--E-ECCeEEEEEE
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVK------------------GQFIE---FQESTIGAAFFSQTL--A-VNDATVKFEI 63 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~------------------~~~~~---~~~~~~~~~~~~~~~--~-~~~~~~~~~~ 63 (162)
.+..=|.|+|..++|||+|+|.++. ..|.- ....|.|+-.....+ . .++....+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 3446667999999999999995541 12221 122344432222111 1 2566788999
Q ss_pred EeCCCcc
Q 031263 64 WDTAGQE 70 (162)
Q Consensus 64 ~D~~g~~ 70 (162)
.||.|..
T Consensus 145 lDTEG~~ 151 (457)
T 4ido_A 145 MDTQGTF 151 (457)
T ss_dssp EEECCBT
T ss_pred EeccCCC
Confidence 9999954
No 371
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.20 E-value=0.0033 Score=44.70 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
-|+++|.+|+|||||.+.+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 372
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.20 E-value=0.0035 Score=44.48 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~ 32 (162)
.....|+++|.+|+||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998875
No 373
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.17 E-value=0.0031 Score=48.23 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
-++|+|+.|+|||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 374
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.16 E-value=0.0044 Score=44.16 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
...|++.|.+|+||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 375
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.16 E-value=0.0036 Score=42.20 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
-|++.|.+|+||||+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
No 376
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.16 E-value=0.0024 Score=47.27 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
-.++++|++|+|||||++.+.+--
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998753
No 377
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.16 E-value=0.0046 Score=45.45 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=22.2
Q ss_pred CCCCCCcccceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 1 m~~~~~~~~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
|..+++.....-|+|+|++++|||+|...+...
T Consensus 1 ~~~~~~~~~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 1 MSDISKASLPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp ------CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCccccCCCCcEEEEECCCccCHHHHHHHHHHh
Confidence 333334444556899999999999999998754
No 378
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.15 E-value=0.0036 Score=44.94 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|++|+|||+|++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999874
No 379
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.14 E-value=0.005 Score=41.08 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
...|+++|.+|+||||+.+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998876
No 380
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.14 E-value=0.0084 Score=38.61 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
...|++.|++|+|||++.+.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 356999999999999998877653
No 381
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.14 E-value=0.0021 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
-++++|++|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998753
No 382
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.13 E-value=0.005 Score=45.59 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=21.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~ 32 (162)
+.--++++|++|+||||+++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998885
No 383
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.13 E-value=0.0012 Score=45.25 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
-|+|.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998875
No 384
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.13 E-value=0.0042 Score=43.15 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
.|+|.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 385
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.11 E-value=0.0032 Score=47.73 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5799999999999999998864
No 386
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.11 E-value=0.0048 Score=43.68 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~ 32 (162)
.....|+|.|.+|+||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999988765
No 387
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.10 E-value=0.0037 Score=41.76 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
-.+|+|+.|+|||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999865
No 388
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.10 E-value=0.0024 Score=44.64 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+..-|++.|..|+||||+++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3467999999999999999988764
No 389
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.10 E-value=0.0037 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998874
No 390
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.10 E-value=0.0045 Score=41.56 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
.|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 391
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.05 E-value=0.0027 Score=42.36 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=16.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
...|++.|.+|+||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 392
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.05 E-value=0.0054 Score=44.29 Aligned_cols=25 Identities=36% Similarity=0.304 Sum_probs=21.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~ 32 (162)
.....|+|.|.+|+||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999998863
No 393
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.04 E-value=0.0051 Score=43.61 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFV 31 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~ 31 (162)
...|+++|++|+||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999887
No 394
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.04 E-value=0.0035 Score=49.21 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
-.++++|++|+||||+++.+++--
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999998754
No 395
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.03 E-value=0.0042 Score=46.33 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
=++.++|+.|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999864
No 396
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.03 E-value=0.0059 Score=42.07 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
...|+|.|.+|+||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998875
No 397
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.02 E-value=0.0039 Score=45.13 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
-++++|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999988763
No 398
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.01 E-value=0.005 Score=40.63 Aligned_cols=21 Identities=14% Similarity=0.445 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
.|++.|.+|+||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988864
No 399
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.01 E-value=0.0036 Score=41.51 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999888754
No 400
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.98 E-value=0.0032 Score=46.31 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
-++++|..|+|||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46889999999999999999763
No 401
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.98 E-value=0.0058 Score=43.23 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
...+++.|++|+|||++++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998864
No 402
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.98 E-value=0.0054 Score=42.47 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.-.+++.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999988753
No 403
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.97 E-value=0.0047 Score=46.32 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~ 32 (162)
+.--++++|..|+||||+++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345789999999999999998875
No 404
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.0037 Score=48.40 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
=.++++|+.|+|||||++.+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999998874
No 405
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.94 E-value=0.0048 Score=48.19 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
.--++|+|..|+|||||++.+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 45689999999999999998875
No 406
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.94 E-value=0.0021 Score=48.11 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
-++++|++|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 407
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.94 E-value=0.0052 Score=42.10 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~ 32 (162)
+.--++++|++|+|||+|+..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344689999999999999999987
No 408
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.93 E-value=0.0053 Score=42.77 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+---++++|++|+|||+|+..+...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3446899999999999999999874
No 409
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.92 E-value=0.0056 Score=40.95 Aligned_cols=21 Identities=48% Similarity=0.643 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
.|+++|.+|+||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999988764
No 410
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.90 E-value=0.0063 Score=41.32 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
..+++.|++|+|||+|+..+.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999988764
No 411
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.85 E-value=0.0066 Score=39.99 Aligned_cols=22 Identities=45% Similarity=0.602 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~ 32 (162)
-.|++.|.+|+||||+.+.+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988764
No 412
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.85 E-value=0.0087 Score=41.87 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+..-|++.|.+|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999988763
No 413
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.79 E-value=0.0066 Score=46.18 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHH
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFV 31 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~ 31 (162)
.+.+|++++|...+||||+++++.
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHHH
Confidence 457999999999999999998664
No 414
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.78 E-value=0.0072 Score=39.38 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 031263 13 LVLLGDVGAGKSSLVLRFV 31 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~ 31 (162)
.+++|+.|+|||+++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999876
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.78 E-value=0.0059 Score=43.42 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
.-.|+++|.+|+||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 416
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.77 E-value=0.0072 Score=42.54 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~ 32 (162)
....|++.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998863
No 417
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.76 E-value=0.0068 Score=41.71 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 418
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.74 E-value=0.0091 Score=40.97 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
...|+++|.+|+||||+.+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998765
No 419
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.73 E-value=0.0072 Score=41.05 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999988753
No 420
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.72 E-value=0.0088 Score=43.26 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~ 32 (162)
..|+++|.+|+||||+.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999886
No 421
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.71 E-value=0.0091 Score=43.24 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=20.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~ 32 (162)
.....+++.|++|+|||++.+.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999986654
No 422
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.71 E-value=0.0068 Score=46.65 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
=+++++|++|+|||||++.+.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 378999999999999999999863
No 423
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.70 E-value=0.009 Score=43.34 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=21.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+...-+++.|++|+|||+|.+.+...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567888899999999999988764
No 424
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.66 E-value=0.0077 Score=47.56 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
=.++++|+.|+|||||++.+.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 425
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.66 E-value=0.0073 Score=47.04 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~ 32 (162)
--++++|+.|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999998886
No 426
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.64 E-value=0.01 Score=42.54 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
....+++.|++|+|||++++.+.+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999999764
No 427
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.64 E-value=0.0092 Score=38.50 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~ 34 (162)
...|++.|++|+|||++.+.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 4569999999999999999887653
No 428
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.63 E-value=0.012 Score=42.58 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+.-.+++.|++|+|||++++.+...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHH
Confidence 3457999999999999999988764
No 429
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.60 E-value=0.01 Score=44.15 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~ 32 (162)
.-|+|+|++|+|||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998875
No 430
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.58 E-value=0.011 Score=41.71 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
....+++.|++|+|||++++.+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999998763
No 431
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.55 E-value=0.01 Score=42.84 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+...+++.|++|+|||++++.+.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3468999999999999999999864
No 432
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.55 E-value=0.0085 Score=45.22 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
.-.++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 44789999999999999999886
No 433
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.52 E-value=0.0082 Score=43.08 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~ 32 (162)
--++++|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999998885
No 434
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.52 E-value=0.011 Score=41.24 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=21.6
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHh
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~ 32 (162)
..+...|+++|.+|+||||+.+.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999988774
No 435
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.51 E-value=0.012 Score=41.89 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.....+++.|++|+|||++.+.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44568999999999999999998864
No 436
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.0089 Score=47.89 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~ 34 (162)
.++++|+.|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999998753
No 437
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.46 E-value=0.008 Score=47.86 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
=.++++|+.|+|||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 36899999999999999988864
No 438
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.45 E-value=0.0092 Score=47.50 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
=.++++|+.|+|||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998874
No 439
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.44 E-value=0.0083 Score=47.39 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
=-++++|+.|+|||||++.+.+..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 357899999999999999998753
No 440
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.42 E-value=0.01 Score=44.57 Aligned_cols=19 Identities=47% Similarity=0.504 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 031263 13 LVLLGDVGAGKSSLVLRFV 31 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~ 31 (162)
.+++|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999887
No 441
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.42 E-value=0.0092 Score=44.26 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.-.+++.|++|+|||+|++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999988863
No 442
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.40 E-value=0.0092 Score=41.27 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.-.+++.|++|+|||+++.++.+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999998888763
No 443
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.40 E-value=0.01 Score=43.45 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
-.+++.|++|+|||+|++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999988863
No 444
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.37 E-value=0.013 Score=42.67 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.-.|++.|++|+|||+|++.+.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 456999999999999999999864
No 445
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.33 E-value=0.011 Score=43.57 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~ 33 (162)
+++.|++|+||||+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999988873
No 446
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.30 E-value=0.012 Score=43.89 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.+++.|++|+|||+|++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998864
No 447
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.25 E-value=0.018 Score=42.23 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+...|++.|++|+|||+|++.+.+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999764
No 448
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.24 E-value=0.011 Score=47.30 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
=.++++|+.|+|||||++.+.+..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 468999999999999999988754
No 449
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.23 E-value=0.013 Score=42.24 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
...+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988763
No 450
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.23 E-value=0.013 Score=46.22 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQF 35 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~ 35 (162)
.++++|+.|+|||||++.+.+...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999998543
No 451
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.21 E-value=0.012 Score=47.13 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQF 35 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~ 35 (162)
.++++|+.|+|||||++.+.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999998543
No 452
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.21 E-value=0.012 Score=40.92 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
.--++++|++|+|||+|+.++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999877754
No 453
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.20 E-value=0.012 Score=42.84 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
.-.++++|..|+||||++..+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999987763
No 454
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.18 E-value=0.02 Score=43.72 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~ 32 (162)
...-|+++|.+|+||||+.+++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346689999999999999999875
No 455
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.17 E-value=0.018 Score=42.34 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+...|++.|++|+|||+|.+.+.+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 4467999999999999999999874
No 456
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.018 Score=44.26 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+++-.|++.|+||+|||.|.+++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 44578999999999999999999874
No 457
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.16 E-value=0.011 Score=46.59 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQF 35 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~ 35 (162)
.++++|+.|+|||||++.+.+-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987543
No 458
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.15 E-value=0.0085 Score=47.84 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
.++++|+.|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 459
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.14 E-value=0.018 Score=39.15 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
....|.+.|..|+||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999888753
No 460
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.12 E-value=0.014 Score=43.08 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~ 33 (162)
+++.|++|+|||++++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988875
No 461
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.019 Score=44.02 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+++--|++.|+||+|||+|++++.+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34557999999999999999999864
No 462
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.09 E-value=0.0095 Score=47.61 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
=.++++|+.|+|||||++.+.+-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47899999999999999988864
No 463
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.03 E-value=0.019 Score=38.93 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 031263 12 KLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~ 32 (162)
.|++.|.+|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988865
No 464
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.03 E-value=0.017 Score=39.74 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
..|+++|++|+|||+|...+....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999998654
No 465
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.02 E-value=0.016 Score=42.38 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
-++|.|..|+|||+|++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 466
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.021 Score=43.88 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+++-.|++.|+||+|||.|.+++.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45678999999999999999999864
No 467
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.00 E-value=0.015 Score=46.57 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKGQF 35 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~~~ 35 (162)
++++|+.|+|||||++.+.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999999999987543
No 468
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.99 E-value=0.017 Score=42.30 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
.--|+++|.+|+||||++..+.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 45688999999999999987764
No 469
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.99 E-value=0.024 Score=42.44 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=20.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~ 32 (162)
...+|+++|.+|+||||+.+.+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999976654
No 470
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.99 E-value=0.011 Score=42.13 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+...|+|.|..|+||||+++.+...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999877653
No 471
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.96 E-value=0.018 Score=39.40 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 031263 13 LVLLGDVGAGKSSLVLRFV 31 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~ 31 (162)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5788999999999998775
No 472
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.95 E-value=0.0081 Score=47.78 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
=.++++|+.|+|||||++.+.+-
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 36899999999999999987764
No 473
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.94 E-value=0.021 Score=39.97 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
..|++-|..|+||||+++.+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 474
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.93 E-value=0.014 Score=43.27 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.-.+++.|++|+|||++++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988864
No 475
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.91 E-value=0.023 Score=41.91 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~ 32 (162)
..|+|+|++|+|||||...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 476
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.91 E-value=0.017 Score=42.41 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~ 33 (162)
+++.|++|+|||++++.+.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999988764
No 477
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.88 E-value=0.016 Score=43.12 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=21.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~~ 34 (162)
+---+.++|++|+|||||+..+....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33468899999999999999998753
No 478
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.86 E-value=0.011 Score=47.23 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
=.++++|+.|+|||||++.+.+-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999988764
No 479
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.83 E-value=0.017 Score=42.29 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~ 33 (162)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999998864
No 480
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.82 E-value=0.022 Score=48.10 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 031263 12 KLVLLGDVGAGKSSLVLRFVKGQF 35 (162)
Q Consensus 12 ki~viG~~~~GKssli~~~~~~~~ 35 (162)
.++++|+.|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999997644
No 481
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.79 E-value=0.022 Score=41.62 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.-.+++.|++|+|||.|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999887753
No 482
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.76 E-value=0.085 Score=35.53 Aligned_cols=65 Identities=14% Similarity=-0.002 Sum_probs=47.5
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCCC
Q 031263 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADL 127 (162)
Q Consensus 59 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~ 127 (162)
+.+.++|+|+.. .......+..+|.+++++..+.. + ..+..+++.+.... .++.++.+|.|+.|.
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~ 142 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIE 142 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 678999999865 33445556779999999887654 4 66667777766543 356788999999995
No 483
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.71 E-value=0.024 Score=40.20 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~~ 34 (162)
...|++.|++|+|||++.+.+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3579999999999999999988753
No 484
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.71 E-value=0.02 Score=44.32 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.-+++++|++|+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999887753
No 485
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.70 E-value=0.009 Score=42.41 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
..+++.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34899999999999999988863
No 486
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.67 E-value=0.024 Score=41.59 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
...|++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998654
No 487
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.65 E-value=0.023 Score=38.34 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~ 33 (162)
++|+|.+++|||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999855
No 488
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.65 E-value=0.019 Score=45.13 Aligned_cols=19 Identities=26% Similarity=0.637 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 031263 13 LVLLGDVGAGKSSLVLRFV 31 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~ 31 (162)
++++|++|+|||||++.++
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 489
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.65 E-value=0.02 Score=42.55 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
-.+++.|++|+|||++++.+...
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988863
No 490
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.65 E-value=0.028 Score=41.68 Aligned_cols=24 Identities=17% Similarity=0.533 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
.-.+++.|++|+|||++++.+...
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988864
No 491
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.64 E-value=0.025 Score=43.04 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+++-.|++.|+||+|||.|.+++.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999864
No 492
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.12 Score=36.16 Aligned_cols=28 Identities=4% Similarity=-0.116 Sum_probs=21.9
Q ss_pred cccceEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 7 ~~~~~ki~viG~~~~GKssli~~~~~~~ 34 (162)
++.++-|++-|.++.|||.|++++.+..
T Consensus 26 P~nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 26 PQNKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred CCCceEEEecCcccccHHHHHHHHhccc
Confidence 4445555556999999999999999873
No 493
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.60 E-value=0.022 Score=45.04 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~ 33 (162)
-.++++|++|+|||+|++.+.+.
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999988764
No 494
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.59 E-value=0.026 Score=39.07 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~ 32 (162)
..-|++.|.+|+||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999988764
No 495
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.57 E-value=0.32 Score=35.27 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=16.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 031263 13 LVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 13 i~viG~~~~GKssli~~~~~~ 33 (162)
+++-|++|+|||++++.+.+.
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 445556999999999999764
No 496
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.57 E-value=0.028 Score=41.87 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
....|++.|++|+|||+|++.+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999764
No 497
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.56 E-value=0.025 Score=42.27 Aligned_cols=24 Identities=25% Similarity=0.583 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 10 ~~ki~viG~~~~GKssli~~~~~~ 33 (162)
...+++.|++|+|||++.+.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988764
No 498
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.56 E-value=0.03 Score=37.63 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 031263 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (162)
Q Consensus 11 ~ki~viG~~~~GKssli~~~~~~~ 34 (162)
.-|++.|.+|+||||+.-.+....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 468999999999999999998754
No 499
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.56 E-value=0.034 Score=38.80 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=21.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHh
Q 031263 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (162)
Q Consensus 8 ~~~~ki~viG~~~~GKssli~~~~~ 32 (162)
.+..-|++.|.+|+||||+++.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999988764
No 500
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.55 E-value=0.029 Score=41.80 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q 031263 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (162)
Q Consensus 9 ~~~ki~viG~~~~GKssli~~~~~~ 33 (162)
+...|++.|++|+|||+|.+.+.+.
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999988864
Done!