BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031266
(162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
Length = 151
Score = 153 bits (386), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 105/157 (66%), Gaps = 15/157 (9%)
Query: 11 RRSSVFDPFSLDVW-DPFRDF----PLPSGYSSALSSQFPPETSAVVNARVDWKETPEAH 65
RRS+VFDPF+ D+W DPF F P SG S ET+A NAR+DWKETPEAH
Sbjct: 5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGGGS--------ETAAFANARMDWKETPEAH 55
Query: 66 VFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPEN 125
VFKADLPG+ L +SG+R E+EDKND WHR ERSSG F RRFRL E+
Sbjct: 56 VFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLED 115
Query: 126 VKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 162
K++++KA +ENGVLTVTVPK E +K KAI+ISG
Sbjct: 116 AKVEEVKAGLENGVLTVTVPKA-EVKKPEVKAIQISG 151
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
Length = 101
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 76/110 (69%), Gaps = 9/110 (8%)
Query: 53 NARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERS 112
NAR+DWKETPEAHVFKADLPG+ L +SG+R E+EDKND WHR ERS
Sbjct: 1 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERS 60
Query: 113 SGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 162
SG F RRFRL E+ K++++KA +ENGVLTVTVPK AI+ISG
Sbjct: 61 SGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA---------AIQISG 101
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
Length = 93
Score = 119 bits (298), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 58/93 (62%), Positives = 69/93 (74%)
Query: 54 ARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSS 113
AR+DWKETPEAHVFKADLPG+ L +SG+R E+EDKND WHR ERSS
Sbjct: 1 ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSS 60
Query: 114 GMFSRRFRLPENVKMDQIKASMENGVLTVTVPK 146
G F RRFRL E+ K++++KA +ENGVLTVTVPK
Sbjct: 61 GKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 93
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 103
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 55 RVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSG 114
RVD KE V ADLPG+ L I G+R E + + + R ER G
Sbjct: 9 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGI-LSIRGERKSESSTETERFSRIERRYG 67
Query: 115 MFSRRFRLPENVKMDQIKASMENGVLTVTVPK 146
F RRF LP++ D I A+ NGVL + +PK
Sbjct: 68 SFHRRFALPDSADADGITAAGRNGVLEIRIPK 99
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 100
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 55 RVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSG 114
RVD KE V ADLPG+ L I G+R E + + + R ER G
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGI-LSIRGERKSESSTETERFSRIERRYG 64
Query: 115 MFSRRFRLPENVKMDQIKASMENGVLTVTVPK 146
F RRF LP++ D I A+ NGVL + +PK
Sbjct: 65 SFHRRFALPDSADADGITAAGRNGVLEIRIPK 96
>pdb|3N3E|A Chain A, Zebrafish Alphaa Crystallin
pdb|3N3E|B Chain B, Zebrafish Alphaa Crystallin
Length = 106
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 89 LQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASME-NGVLTVTVPKV 147
++I G+ G ER+D + R F RR+RLP NV I ++ +G+LT+ PK
Sbjct: 35 VEIQGKHG-ERQDDHGYISRE------FHRRYRLPSNVDQSAITCTLSADGLLTLCGPKT 87
>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
Length = 161
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 118 RRFRLPENVKMDQIKASMENGVLTVTVPKVEEARK 152
R +LP VK + A ENGVL+V +PK E + K
Sbjct: 121 RTIKLPATVKEENASAKFENGVLSVILPKAESSIK 155
>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
Length = 147
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 118 RRFRLPENVKMDQIKASMENGVLTVTVPKVEEARK 152
R +LP VK + A ENGVL+V +PK E + K
Sbjct: 107 RTIKLPATVKEENASAKFENGVLSVILPKAESSIK 141
>pdb|4FEI|A Chain A, Hsp17.7 From Deinococcus Radiodurans
Length = 102
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 57 DWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMF 116
DW++ D+PG+ L +SG+R + R ER SG F
Sbjct: 10 DWRDAGTHLDLLLDVPGVDAGTLALAEDGGQ-LTVSGER-----PGTEHLLRSERPSGRF 63
Query: 117 SRRFRLPENVKMDQIKASMENGVLTVTVPKV 147
R PE V+ AS+ GVLTV K+
Sbjct: 64 VRELAFPEPVRPASGVASLAGGVLTVRFEKL 94
>pdb|3L1E|A Chain A, Bovine Alphaa Crystallin Zinc Bound
Length = 106
Score = 32.7 bits (73), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 89 LQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASME-NGVLTVTVPKV 147
++I G+ ER+D + R F RR+RLP NV + S+ +G+LT + PK+
Sbjct: 37 VEIHGKHN-ERQDDHGYISRE------FHRRYRLPSNVDQSALSCSLSADGMLTFSGPKI 89
>pdb|3L1F|A Chain A, Bovine Alphaa Crystallin
Length = 103
Score = 32.7 bits (73), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 89 LQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASME-NGVLTVTVPKV 147
++I G+ ER+D + R F RR+RLP NV + S+ +G+LT + PK+
Sbjct: 34 VEIHGKHN-ERQDDHGYISRE------FHRRYRLPSNVDQSALSCSLSADGMLTFSGPKI 86
>pdb|3AAB|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form I Crystal
pdb|3AAB|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form I Crystal
pdb|3AAC|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form Ii Crystal
pdb|3AAC|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form Ii Crystal
Length = 123
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 56 VDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGM 115
VD E V ADL G L I +R I + ++
Sbjct: 27 VDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREI-----TEPGVKYLTQRPK 81
Query: 116 FSRR-FRLPENVKMD-QIKASMENGVLTVTVP 145
+ R+ RLP NV D +I ENGVLT+ +P
Sbjct: 82 YVRKVIRLPYNVAKDAEISGKYENGVLTIRIP 113
>pdb|3VQL|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant
pdb|3VQL|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant
pdb|3VQM|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|C Chain C, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|D Chain D, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|E Chain E, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|F Chain F, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|G Chain G, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|H Chain H, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|I Chain I, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|J Chain J, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|K Chain K, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|L Chain L, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|M Chain M, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|N Chain N, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
Length = 115
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 56 VDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGM 115
VD E V ADL G L I +R I + ++
Sbjct: 27 VDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREI-----TEPGVKYLTQRPK 81
Query: 116 FSRR-FRLPENVKMD-QIKASMENGVLTVTVP 145
+ R+ RLP NV D +I ENGVLT+ +P
Sbjct: 82 YVRKVIRLPYNVAKDAEISGKYENGVLTIRIP 113
>pdb|3VQK|A Chain A, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|B Chain B, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|C Chain C, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|D Chain D, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|E Chain E, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|F Chain F, Small Heat Shock Protein Hsp14.0 Of Wild Type
Length = 123
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 56 VDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGM 115
VD E V ADL G L I +R I + ++
Sbjct: 27 VDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREI-----TEPGVKYLTQRPK 81
Query: 116 FSRR-FRLPENVKMD-QIKASMENGVLTVTVP 145
+ R+ RLP NV D +I ENGVLT+ +P
Sbjct: 82 YVRKVIRLPYNVAKDAEISGKYENGVLTIRIP 113
>pdb|1VE2|A Chain A, Crystal Structure Of Uroporphyrin-Iii-C-Methyltransferase
From Thermus Thermophilus
pdb|1VE2|B Chain B, Crystal Structure Of Uroporphyrin-Iii-C-Methyltransferase
From Thermus Thermophilus
Length = 235
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 34 SGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGL 74
G L +FPPET + ARV W DLPGL
Sbjct: 166 GGLKERLLERFPPETPLALLARVGWPGEAVRLGRVEDLPGL 206
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 27.3 bits (59), Expect = 4.0, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 100 EDKNDTWHRWERSSG----MFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANA 155
E++N+ W+ + +G M+ + P VKM+ IKA+ E L + + V A K +
Sbjct: 478 ENENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSG 537
Query: 156 KAIEISG 162
+ G
Sbjct: 538 GESKTPG 544
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,515,460
Number of Sequences: 62578
Number of extensions: 161992
Number of successful extensions: 366
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 16
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)