Query 031266
Match_columns 162
No_of_seqs 227 out of 1489
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 11:40:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031266.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031266hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 2.3E-28 5E-33 178.2 14.6 104 52-161 31-135 (142)
2 COG0071 IbpA Molecular chapero 100.0 3.5E-28 7.5E-33 178.6 14.8 109 51-161 38-146 (146)
3 PRK10743 heat shock protein Ib 100.0 3.4E-28 7.4E-33 176.6 13.9 102 54-161 35-137 (137)
4 cd06472 ACD_ScHsp26_like Alpha 100.0 1.4E-27 3.1E-32 162.5 12.3 92 55-146 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 1.9E-25 4.2E-30 154.2 13.5 102 57-161 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 1.8E-25 3.8E-30 152.3 12.2 91 54-146 1-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 8.2E-25 1.8E-29 148.4 13.1 89 54-146 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 2.5E-23 5.3E-28 140.0 11.8 82 57-146 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 1.1E-22 2.3E-27 136.1 11.4 82 57-146 1-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.9 1.4E-22 3.1E-27 135.7 11.6 82 58-147 2-84 (84)
11 cd06479 ACD_HspB7_like Alpha c 99.9 7.8E-23 1.7E-27 136.0 9.6 79 57-146 2-81 (81)
12 cd06475 ACD_HspB1_like Alpha c 99.9 9.2E-22 2E-26 132.4 11.1 82 56-145 3-85 (86)
13 cd06476 ACD_HspB2_like Alpha c 99.9 1.4E-21 3.1E-26 130.6 11.5 81 58-146 2-83 (83)
14 cd06481 ACD_HspB9_like Alpha c 99.9 1.1E-21 2.5E-26 132.2 10.7 83 60-146 4-87 (87)
15 cd06464 ACD_sHsps-like Alpha-c 99.9 2.9E-21 6.4E-26 128.9 11.7 88 57-146 1-88 (88)
16 cd06482 ACD_HspB10 Alpha cryst 99.9 3.2E-21 6.9E-26 129.8 10.6 80 61-145 6-86 (87)
17 cd06477 ACD_HspB3_Like Alpha c 99.9 1.4E-20 3.1E-25 125.6 11.2 79 59-145 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.8 8.6E-21 1.9E-25 126.7 9.5 77 62-146 6-83 (83)
19 KOG0710 Molecular chaperone (s 99.8 5.8E-20 1.2E-24 141.0 7.4 115 47-162 78-196 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.7 2.2E-17 4.8E-22 111.9 10.1 81 58-146 10-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.7 6.8E-16 1.5E-20 116.1 11.6 99 54-161 63-162 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 1.7E-14 3.7E-19 93.0 10.3 80 58-146 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 8E-12 1.7E-16 81.8 8.7 70 58-148 1-70 (78)
24 PF05455 GvpH: GvpH; InterPro 99.2 4.1E-10 8.9E-15 84.3 10.8 79 50-148 88-169 (177)
25 cd06463 p23_like Proteins cont 99.1 2.2E-09 4.8E-14 70.2 9.3 74 59-148 2-75 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 2.2E-08 4.8E-13 66.1 7.8 76 57-148 1-76 (84)
27 PF04969 CS: CS domain; Inter 98.7 9.9E-07 2.1E-11 57.0 11.2 77 54-146 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.3 9.2E-06 2E-10 56.4 10.0 78 54-148 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.2 7.6E-06 1.6E-10 66.9 8.8 65 62-145 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 98.1 2.8E-05 6E-10 51.5 8.5 76 57-148 1-76 (84)
31 cd06468 p23_CacyBP p23_like do 98.0 0.00018 3.8E-09 48.3 10.1 78 55-148 3-84 (92)
32 cd06488 p23_melusin_like p23_l 97.9 0.00017 3.6E-09 48.2 9.5 78 55-148 2-79 (87)
33 cd06467 p23_NUDC_like p23_like 97.9 0.0002 4.3E-09 47.2 8.8 74 56-148 1-76 (85)
34 cd06493 p23_NUDCD1_like p23_NU 97.8 0.00038 8.2E-09 46.2 9.0 74 56-148 1-76 (85)
35 cd06494 p23_NUDCD2_like p23-li 97.5 0.0014 2.9E-08 44.6 9.2 76 53-148 5-82 (93)
36 cd00237 p23 p23 binds heat sho 97.5 0.0027 5.8E-08 44.1 10.3 77 54-148 2-78 (106)
37 KOG1309 Suppressor of G2 allel 97.4 0.00092 2E-08 50.4 7.1 80 53-148 3-82 (196)
38 PLN03088 SGT1, suppressor of 97.1 0.0042 9.1E-08 51.8 9.0 80 53-148 156-235 (356)
39 cd06492 p23_mNUDC_like p23-lik 96.6 0.028 6.1E-07 37.5 8.6 73 57-148 2-78 (87)
40 cd06490 p23_NCB5OR p23_like do 96.5 0.067 1.4E-06 35.6 10.0 75 56-148 1-79 (87)
41 cd06495 p23_NUDCD3_like p23-li 96.0 0.13 2.8E-06 35.4 9.4 80 53-148 4-86 (102)
42 PF14913 DPCD: DPCD protein fa 92.0 1.9 4.1E-05 33.0 8.7 81 49-148 82-170 (194)
43 KOG2265 Nuclear distribution p 90.1 3.7 8E-05 31.0 8.6 78 52-148 17-96 (179)
44 PF13349 DUF4097: Domain of un 86.6 9.9 0.00021 27.4 9.3 82 54-143 66-147 (166)
45 COG5091 SGT1 Suppressor of G2 82.7 0.92 2E-05 36.9 2.1 85 49-148 172-256 (368)
46 KOG3158 HSP90 co-chaperone p23 80.6 8.2 0.00018 29.2 6.3 79 52-148 6-84 (180)
47 KOG1667 Zn2+-binding protein M 79.8 11 0.00023 30.4 7.1 83 51-148 212-294 (320)
48 cd06477 ACD_HspB3_Like Alpha c 78.1 5.4 0.00012 26.2 4.3 30 64-94 51-82 (83)
49 PF00011 HSP20: Hsp20/alpha cr 77.8 8.5 0.00018 25.6 5.4 37 63-100 55-92 (102)
50 cd06482 ACD_HspB10 Alpha cryst 77.3 5.8 0.00013 26.4 4.3 33 115-148 9-41 (87)
51 cd06464 ACD_sHsps-like Alpha-c 76.9 5.2 0.00011 25.4 4.0 33 61-94 54-87 (88)
52 cd06526 metazoan_ACD Alpha-cry 75.5 5.1 0.00011 25.9 3.7 31 63-94 50-82 (83)
53 cd06471 ACD_LpsHSP_like Group 74.1 6.1 0.00013 26.0 3.8 30 63-93 62-91 (93)
54 cd06470 ACD_IbpA-B_like Alpha- 72.7 15 0.00032 24.2 5.4 33 115-148 12-44 (90)
55 cd06480 ACD_HspB8_like Alpha-c 72.0 9.1 0.0002 25.7 4.3 30 63-93 58-89 (91)
56 cd06478 ACD_HspB4-5-6 Alpha-cr 71.2 12 0.00025 24.4 4.6 33 115-148 8-40 (83)
57 cd06472 ACD_ScHsp26_like Alpha 71.2 8 0.00017 25.5 3.9 31 62-93 59-90 (92)
58 PF12992 DUF3876: Domain of un 71.1 17 0.00037 24.6 5.5 39 53-92 25-68 (95)
59 cd06476 ACD_HspB2_like Alpha c 70.7 10 0.00023 24.8 4.3 33 115-148 8-40 (83)
60 PF08308 PEGA: PEGA domain; I 70.6 17 0.00037 22.5 5.2 41 55-95 26-67 (71)
61 cd06497 ACD_alphaA-crystallin_ 70.4 11 0.00025 24.7 4.4 33 115-148 11-43 (86)
62 cd06498 ACD_alphaB-crystallin_ 69.9 9.2 0.0002 25.1 3.9 31 64-95 51-83 (84)
63 cd06481 ACD_HspB9_like Alpha c 69.8 7 0.00015 25.8 3.3 32 62-94 53-86 (87)
64 PRK10743 heat shock protein Ib 69.4 18 0.00039 26.1 5.6 32 116-148 47-78 (137)
65 cd06479 ACD_HspB7_like Alpha c 66.7 14 0.00031 24.1 4.2 33 115-148 9-41 (81)
66 COG0071 IbpA Molecular chapero 66.3 20 0.00042 25.9 5.4 35 63-98 100-135 (146)
67 cd06469 p23_DYX1C1_like p23_li 65.8 22 0.00048 22.2 5.0 33 63-96 36-69 (78)
68 PRK11597 heat shock chaperone 63.0 27 0.00058 25.4 5.5 32 116-148 45-76 (142)
69 PF04972 BON: BON domain; Int 62.6 16 0.00035 22.0 3.8 25 72-97 12-36 (64)
70 PF01954 DUF104: Protein of un 62.1 8.1 0.00018 23.9 2.3 15 129-143 3-17 (60)
71 cd06475 ACD_HspB1_like Alpha c 59.8 26 0.00056 23.0 4.6 33 115-148 11-43 (86)
72 KOG3591 Alpha crystallins [Pos 54.5 19 0.00041 27.1 3.6 32 68-99 120-152 (173)
73 PRK05518 rpl6p 50S ribosomal p 51.4 84 0.0018 23.8 6.7 45 76-145 13-57 (180)
74 TIGR03653 arch_L6P archaeal ri 50.6 96 0.0021 23.2 6.8 46 76-146 7-52 (170)
75 KOG3260 Calcyclin-binding prot 49.8 77 0.0017 24.3 6.1 77 56-148 77-154 (224)
76 cd06467 p23_NUDC_like p23_like 48.8 42 0.00091 21.2 4.2 30 116-145 10-39 (85)
77 TIGR03654 L6_bact ribosomal pr 47.7 99 0.0021 23.2 6.6 44 76-145 11-54 (175)
78 cd02178 GH16_beta_agarase Beta 46.3 89 0.0019 24.6 6.5 44 81-125 60-110 (258)
79 KOG3413 Mitochondrial matrix p 45.8 10 0.00022 27.9 0.9 24 123-146 66-89 (156)
80 CHL00140 rpl6 ribosomal protei 44.4 84 0.0018 23.6 5.7 44 76-145 12-55 (178)
81 PRK10568 periplasmic protein; 44.0 43 0.00092 25.7 4.2 25 71-96 72-96 (203)
82 PRK05498 rplF 50S ribosomal pr 43.9 1.1E+02 0.0024 23.0 6.3 44 76-145 12-55 (178)
83 cd00503 Frataxin Frataxin is a 43.4 26 0.00057 24.1 2.6 18 129-146 28-45 (105)
84 PRK14290 chaperone protein Dna 43.3 1.6E+02 0.0035 24.6 7.9 30 119-148 277-306 (365)
85 cd02175 GH16_lichenase lichena 41.5 87 0.0019 23.8 5.6 47 76-125 31-80 (212)
86 PF05455 GvpH: GvpH; InterPro 41.0 1.4E+02 0.003 22.7 6.3 40 60-100 133-172 (177)
87 PF01491 Frataxin_Cyay: Fratax 40.9 39 0.00085 23.3 3.2 19 129-147 30-48 (109)
88 PRK00446 cyaY frataxin-like pr 40.9 30 0.00065 23.8 2.6 18 131-148 29-46 (105)
89 PTZ00027 60S ribosomal protein 40.3 1.4E+02 0.003 22.8 6.4 48 76-146 13-60 (190)
90 cd06494 p23_NUDCD2_like p23-li 40.0 64 0.0014 21.5 4.1 30 115-144 16-45 (93)
91 TIGR03421 FeS_CyaY iron donor 39.6 28 0.0006 23.8 2.3 18 130-147 26-43 (102)
92 PF12624 Chorein_N: N-terminal 36.7 61 0.0013 22.3 3.7 22 72-94 18-39 (118)
93 cd08023 GH16_laminarinase_like 34.8 2.1E+02 0.0045 21.9 6.8 49 74-125 35-91 (235)
94 PRK11198 LysM domain/BON super 34.7 57 0.0012 23.6 3.4 25 72-97 38-62 (147)
95 TIGR03422 mito_frataxin fratax 32.3 35 0.00076 23.1 1.8 16 132-147 30-45 (97)
96 COG4004 Uncharacterized protei 31.0 1.3E+02 0.0029 20.3 4.3 34 56-94 26-59 (96)
97 cd02177 GH16_kappa_carrageenas 30.5 2.6E+02 0.0056 22.5 6.8 44 80-124 45-103 (269)
98 PF14814 UB2H: Bifunctional tr 29.6 1.3E+02 0.0028 19.6 4.2 43 102-144 29-73 (85)
99 PTZ00179 60S ribosomal protein 29.4 2.1E+02 0.0045 21.8 5.8 47 76-145 12-58 (189)
100 KOG3247 Uncharacterized conser 29.4 32 0.00069 29.7 1.4 75 53-148 3-80 (466)
101 PF07873 YabP: YabP family; I 27.6 56 0.0012 20.2 2.1 22 74-96 23-44 (66)
102 PF07076 DUF1344: Protein of u 27.6 63 0.0014 20.1 2.2 15 118-132 25-39 (61)
103 PF03983 SHD1: SLA1 homology d 27.5 69 0.0015 20.5 2.4 33 57-89 14-46 (70)
104 PF08845 SymE_toxin: Toxin Sym 27.3 1.1E+02 0.0024 18.6 3.3 23 69-92 33-56 (57)
105 PF13620 CarboxypepD_reg: Carb 27.3 75 0.0016 19.7 2.7 29 63-91 48-77 (82)
106 PF14730 DUF4468: Domain of un 27.3 1.8E+02 0.004 18.9 5.8 16 131-146 70-85 (91)
107 cd00413 Glyco_hydrolase_16 gly 27.2 1.7E+02 0.0037 21.7 5.1 38 88-125 39-79 (210)
108 PF06964 Alpha-L-AF_C: Alpha-L 26.8 1.7E+02 0.0036 21.5 4.9 29 119-147 148-176 (177)
109 cd02180 GH16_fungal_KRE6_gluca 26.5 89 0.0019 25.6 3.6 46 76-124 40-90 (295)
110 PF13014 KH_3: KH domain 26.5 82 0.0018 17.4 2.5 21 141-162 23-43 (43)
111 PRK14299 chaperone protein Dna 26.1 3.3E+02 0.0071 21.9 6.8 30 119-148 206-237 (291)
112 PF00347 Ribosomal_L6: Ribosom 25.7 1.6E+02 0.0035 18.2 4.0 44 76-145 2-47 (77)
113 cd02182 GH16_Strep_laminarinas 25.1 1.4E+02 0.003 23.6 4.4 17 77-96 46-63 (259)
114 COG0097 RplF Ribosomal protein 24.9 2.9E+02 0.0063 20.9 5.8 21 74-95 10-30 (178)
115 PF03681 UPF0150: Uncharacteri 24.0 1.1E+02 0.0023 17.3 2.7 19 56-74 4-24 (48)
116 TIGR02934 nifT_nitrog probable 23.5 74 0.0016 20.2 2.0 13 136-148 9-21 (67)
117 COG2880 Uncharacterized protei 23.2 7 0.00015 24.8 -2.7 13 130-142 6-18 (67)
118 PF02736 Myosin_N: Myosin N-te 22.5 1.1E+02 0.0023 17.2 2.4 20 73-92 20-39 (42)
119 TIGR03835 termin_org_DnaJ term 21.7 3.2E+02 0.007 25.8 6.4 27 122-148 756-782 (871)
120 smart00813 Alpha-L-AF_C Alpha- 21.6 2.6E+02 0.0057 20.8 5.1 27 121-147 161-188 (189)
121 COG1965 CyaY Protein implicate 21.5 81 0.0018 21.9 2.1 18 131-148 30-47 (106)
122 TIGR02856 spore_yqfC sporulati 21.3 77 0.0017 20.9 1.9 42 53-96 19-62 (85)
123 cd02179 GH16_beta_GRP beta-1,3 21.1 4.8E+02 0.01 21.5 8.2 14 82-96 42-55 (321)
124 PF14014 DUF4230: Protein of u 20.9 61 0.0013 23.2 1.5 27 122-148 48-79 (157)
125 PF03368 Dicer_dimer: Dicer di 20.8 1.9E+02 0.0041 18.9 3.8 27 49-75 17-43 (90)
126 PRK14284 chaperone protein Dna 20.8 5.2E+02 0.011 21.8 9.4 30 119-148 285-316 (391)
127 TIGR02892 spore_yabP sporulati 20.6 83 0.0018 20.8 1.9 21 74-95 22-42 (85)
128 PF06988 NifT: NifT/FixU prote 20.3 87 0.0019 19.7 1.8 13 136-148 9-21 (64)
129 PRK01379 cyaY frataxin-like pr 20.1 98 0.0021 21.3 2.3 15 131-145 30-44 (103)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.96 E-value=2.3e-28 Score=178.18 Aligned_cols=104 Identities=22% Similarity=0.356 Sum_probs=92.5
Q ss_pred ccceeEEEE-CCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCC
Q 031266 52 VNARVDWKE-TPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQ 130 (162)
Q Consensus 52 ~~p~~di~e-~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 130 (162)
..|++||+| ++++|+|.++|||++++||+|++++ +.|+|+|++..+ .++.+|+++||.+|.|.|+|.||.+||.+
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~~--~~~~~~~~~Er~~g~F~R~f~LP~~vd~~- 106 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQP--EKEVKWLHQGLVNQPFSLSFTLAENMEVS- 106 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEccc--cCCCcEEEEEEeCcEEEEEEECCCCcccC-
Confidence 348999998 5779999999999999999999997 599999997643 35678999999999999999999999998
Q ss_pred eEEEEeCCEEEEEEeCcCccccCCceEEecc
Q 031266 131 IKASMENGVLTVTVPKVEEARKANAKAIEIS 161 (162)
Q Consensus 131 i~A~~~~GvL~I~lpK~~~~~~~~~~~I~I~ 161 (162)
+|+|+||||+|+|||.. ++..++++|+|+
T Consensus 107 -~A~~~nGVL~I~lPK~~-~~~~~~rkI~I~ 135 (142)
T PRK11597 107 -GATFVNGLLHIDLIRNE-PEAIAPQRIAIS 135 (142)
T ss_pred -cCEEcCCEEEEEEeccC-ccccCCcEEEEC
Confidence 79999999999999986 445667999996
No 2
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.5e-28 Score=178.61 Aligned_cols=109 Identities=42% Similarity=0.665 Sum_probs=100.9
Q ss_pred cccceeEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCC
Q 031266 51 VVNARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQ 130 (162)
Q Consensus 51 ~~~p~~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 130 (162)
.+.|++||++++++|+|.++|||++++||+|++++ +.|+|+|++..+...++..++++|+.+|.|+|+|.||..|+.+.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 46799999999999999999999999999999998 49999999988666778899999999999999999999999999
Q ss_pred eEEEEeCCEEEEEEeCcCccccCCceEEecc
Q 031266 131 IKASMENGVLTVTVPKVEEARKANAKAIEIS 161 (162)
Q Consensus 131 i~A~~~~GvL~I~lpK~~~~~~~~~~~I~I~ 161 (162)
++|+|+||+|+|++||.. ++..+.++|+|+
T Consensus 117 ~~A~~~nGvL~I~lpk~~-~~~~~~~~i~I~ 146 (146)
T COG0071 117 IKAKYKNGLLTVTLPKAE-PEEKKPKRIEIE 146 (146)
T ss_pred eeeEeeCcEEEEEEeccc-cccccCceeecC
Confidence 999999999999999999 665667888875
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.96 E-value=3.4e-28 Score=176.61 Aligned_cols=102 Identities=22% Similarity=0.381 Sum_probs=91.8
Q ss_pred ceeEEEE-CCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeE
Q 031266 54 ARVDWKE-TPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIK 132 (162)
Q Consensus 54 p~~di~e-~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 132 (162)
|++||.+ ++++|+|.++|||++++||+|+++++ .|+|+|++..+ .++.+|+++||.+|+|+|+|.||.+||.+ +
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~-~LtI~ge~~~~--~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~ 109 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDN-LLVVKGAHADE--QKERTYLYQGIAERNFERKFQLAENIHVR--G 109 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEECcc--ccCCcEEEEEEECCEEEEEEECCCCcccC--c
Confidence 8899994 89999999999999999999999985 99999998654 24578999999999999999999999999 5
Q ss_pred EEEeCCEEEEEEeCcCccccCCceEEecc
Q 031266 133 ASMENGVLTVTVPKVEEARKANAKAIEIS 161 (162)
Q Consensus 133 A~~~~GvL~I~lpK~~~~~~~~~~~I~I~ 161 (162)
|+|+||||+|++||.. ++..++++|+|+
T Consensus 110 A~~~dGVL~I~lPK~~-~~~~~~r~I~I~ 137 (137)
T PRK10743 110 ANLVNGLLYIDLERVI-PEAKKPRRIEIN 137 (137)
T ss_pred CEEeCCEEEEEEeCCC-ccccCCeEEeeC
Confidence 9999999999999986 555677999985
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.95 E-value=1.4e-27 Score=162.49 Aligned_cols=92 Identities=75% Similarity=1.169 Sum_probs=85.9
Q ss_pred eeEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEE
Q 031266 55 RVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKAS 134 (162)
Q Consensus 55 ~~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 134 (162)
++||+|++++|+|.++|||++++||+|++++++.|+|+|++..+...++..++++|+.+|.|.|+|.||.+||.++|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 47999999999999999999999999999865589999998766556678999999999999999999999999999999
Q ss_pred EeCCEEEEEEeC
Q 031266 135 MENGVLTVTVPK 146 (162)
Q Consensus 135 ~~~GvL~I~lpK 146 (162)
|+||+|+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.94 E-value=1.9e-25 Score=154.18 Aligned_cols=102 Identities=49% Similarity=0.781 Sum_probs=84.2
Q ss_pred EEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEe
Q 031266 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASME 136 (162)
Q Consensus 57 di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 136 (162)
||.+++++|.|.++|||+++++|+|+++++ .|+|+|++. ....+..++..|+.++.|.|+|.||.++|.++|+|+|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~-~L~I~g~~~--~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~ 77 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDN-KLVISGKRK--EEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYE 77 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETT-EEEEEEEEE--GEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEET
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecC-ccceeceee--eeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEec
Confidence 799999999999999999999999999985 999999998 33455778888999999999999999999999999999
Q ss_pred CCEEEEEEeCcCccccCCceEEecc
Q 031266 137 NGVLTVTVPKVEEARKANAKAIEIS 161 (162)
Q Consensus 137 ~GvL~I~lpK~~~~~~~~~~~I~I~ 161 (162)
||+|+|++||.........++|+|+
T Consensus 78 ~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 78 NGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp TSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred CCEEEEEEEccccccCCCCeEEEeC
Confidence 9999999999993334478999986
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.93 E-value=1.8e-25 Score=152.31 Aligned_cols=91 Identities=46% Similarity=0.751 Sum_probs=82.6
Q ss_pred ceeEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceec--CCCCcEEEEeeeeeEEEEEEECCCCCCcCCe
Q 031266 54 ARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIERE--DKNDTWHRWERSSGMFSRRFRLPENVKMDQI 131 (162)
Q Consensus 54 p~~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~--~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 131 (162)
|++||+|++++|+|.++|||+++++|+|++.+ +.|+|+|++....+ ..+.+++++|+.+|+|.|+|.|| +++.+.|
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 36899999999999999999999999999997 59999999876432 23458999999999999999999 7999999
Q ss_pred EEEEeCCEEEEEEeC
Q 031266 132 KASMENGVLTVTVPK 146 (162)
Q Consensus 132 ~A~~~~GvL~I~lpK 146 (162)
+|+|+||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.93 E-value=8.2e-25 Score=148.40 Aligned_cols=89 Identities=22% Similarity=0.467 Sum_probs=81.8
Q ss_pred ceeEEEECC-CeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeE
Q 031266 54 ARVDWKETP-EAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIK 132 (162)
Q Consensus 54 p~~di~e~~-~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 132 (162)
|++||++++ ++|+|.++|||+++++|+|+++++ .|+|+|++..... ++.+|+++|+.+|.|.|+|.||.++|.. +
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~-~L~I~g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~ 76 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENN-QLTVTGKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKVK--G 76 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccc-CCCcEEEEEEeceEEEEEEECCCCceEC--e
Confidence 679999975 999999999999999999999974 9999999987655 6678999999999999999999999975 9
Q ss_pred EEEeCCEEEEEEeC
Q 031266 133 ASMENGVLTVTVPK 146 (162)
Q Consensus 133 A~~~~GvL~I~lpK 146 (162)
|+|+||+|+|+||+
T Consensus 77 A~~~~GvL~I~l~~ 90 (90)
T cd06470 77 AELENGLLTIDLER 90 (90)
T ss_pred eEEeCCEEEEEEEC
Confidence 99999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.91 E-value=2.5e-23 Score=140.03 Aligned_cols=82 Identities=28% Similarity=0.513 Sum_probs=73.2
Q ss_pred EEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEE-
Q 031266 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASM- 135 (162)
Q Consensus 57 di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~- 135 (162)
+|.+++++|.|.++|||+++++|+|++.+ +.|+|+|++.... ++..|.++| |.|+|.||.+||.++|+|+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~e-----f~R~~~LP~~Vd~~~i~A~~~ 75 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSERQ--DDHGYISRE-----FHRRYRLPSNVDQSAITCSLS 75 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEEEE-----EEEEEECCCCCChHHeEEEeC
Confidence 79999999999999999999999999998 4999999975442 334566654 99999999999999999999
Q ss_pred eCCEEEEEEeC
Q 031266 136 ENGVLTVTVPK 146 (162)
Q Consensus 136 ~~GvL~I~lpK 146 (162)
+||+|+|++||
T Consensus 76 ~dGvL~I~~PK 86 (86)
T cd06497 76 ADGMLTFSGPK 86 (86)
T ss_pred CCCEEEEEecC
Confidence 89999999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.89 E-value=1.1e-22 Score=136.07 Aligned_cols=82 Identities=27% Similarity=0.478 Sum_probs=71.8
Q ss_pred EEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEE-
Q 031266 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASM- 135 (162)
Q Consensus 57 di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~- 135 (162)
+|.+++++|+|.++|||++++||+|++.+ +.|+|+|++.... ++..++++| |.|+|.||.+||.++|+|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~--~~~~~~~~e-----f~R~~~LP~~vd~~~i~A~~~ 72 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEERQ--DEHGFISRE-----FHRRYRLPPGVDPAAITSSLS 72 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEceEc--CCCCEEEEE-----EEEEEECCCCcChHHeEEEEC
Confidence 47889999999999999999999999998 4999999976432 234565544 99999999999999999999
Q ss_pred eCCEEEEEEeC
Q 031266 136 ENGVLTVTVPK 146 (162)
Q Consensus 136 ~~GvL~I~lpK 146 (162)
+||+|+|++||
T Consensus 73 ~dGvL~I~~PK 83 (83)
T cd06478 73 ADGVLTISGPR 83 (83)
T ss_pred CCCEEEEEecC
Confidence 69999999998
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.89 E-value=1.4e-22 Score=135.70 Aligned_cols=82 Identities=26% Similarity=0.438 Sum_probs=71.6
Q ss_pred EEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEe-
Q 031266 58 WKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASME- 136 (162)
Q Consensus 58 i~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~- 136 (162)
+.+++++|.|.++|||++++||+|++.+ +.|+|+|++.... ++..++++ .|.|+|.||.+||.++|+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~-----eF~R~~~LP~~vd~~~i~A~~~~ 73 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEERQ--DEHGFISR-----EFQRKYRIPADVDPLTITSSLSP 73 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEEE-----EEEEEEECCCCCChHHcEEEeCC
Confidence 5788999999999999999999999997 5999999876543 23455543 4999999999999999999995
Q ss_pred CCEEEEEEeCc
Q 031266 137 NGVLTVTVPKV 147 (162)
Q Consensus 137 ~GvL~I~lpK~ 147 (162)
||+|+|++||+
T Consensus 74 dGvL~I~lPk~ 84 (84)
T cd06498 74 DGVLTVCGPRK 84 (84)
T ss_pred CCEEEEEEeCC
Confidence 99999999995
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.89 E-value=7.8e-23 Score=135.95 Aligned_cols=79 Identities=19% Similarity=0.400 Sum_probs=71.4
Q ss_pred EEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEE-
Q 031266 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASM- 135 (162)
Q Consensus 57 di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~- 135 (162)
||.|++++|+|.++|||++++||+|++.+ +.|+|+|+++... +..+|+|.|+|.||.+||+++|+|+|
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~~----------~~~~g~F~R~~~LP~~vd~e~v~A~l~ 70 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLASD----------GTVMNTFTHKCQLPEDVDPTSVSSSLG 70 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccC----------CCEEEEEEEEEECCCCcCHHHeEEEec
Confidence 68999999999999999999999999998 5999999985332 12588999999999999999999998
Q ss_pred eCCEEEEEEeC
Q 031266 136 ENGVLTVTVPK 146 (162)
Q Consensus 136 ~~GvL~I~lpK 146 (162)
+||+|+|++++
T Consensus 71 ~~GvL~I~~~~ 81 (81)
T cd06479 71 EDGTLTIKARR 81 (81)
T ss_pred CCCEEEEEecC
Confidence 99999999985
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.88 E-value=9.2e-22 Score=132.36 Aligned_cols=82 Identities=26% Similarity=0.509 Sum_probs=71.7
Q ss_pred eEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEE
Q 031266 56 VDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASM 135 (162)
Q Consensus 56 ~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 135 (162)
.||+|++++|.|.++|||+++++|+|++.+ +.|+|+|++..... ...+. .++|+|+|.||.+||.++|+|+|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~--~~~~~-----~~~f~R~f~LP~~vd~~~v~A~~ 74 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEEKQD--EHGFV-----SRCFTRKYTLPPGVDPTAVTSSL 74 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECcCcC--CCCEE-----EEEEEEEEECCCCCCHHHcEEEE
Confidence 589999999999999999999999999998 59999999864322 22332 35899999999999999999999
Q ss_pred e-CCEEEEEEe
Q 031266 136 E-NGVLTVTVP 145 (162)
Q Consensus 136 ~-~GvL~I~lp 145 (162)
. ||+|+|++|
T Consensus 75 ~~dGvL~I~lP 85 (86)
T cd06475 75 SPDGILTVEAP 85 (86)
T ss_pred CCCCeEEEEec
Confidence 6 999999998
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.87 E-value=1.4e-21 Score=130.57 Aligned_cols=81 Identities=20% Similarity=0.365 Sum_probs=69.5
Q ss_pred EEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEe-
Q 031266 58 WKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASME- 136 (162)
Q Consensus 58 i~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~- 136 (162)
+..++++|.|.++|||++++||+|++.++ .|+|+|++.... +...+++ +.|.|+|.||.+||.++|+|+|.
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~--~~~~~~~-----~eF~R~~~LP~~vd~~~v~A~~~~ 73 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDN-LLEVSARHPQRM--DRHGFVS-----REFTRTYILPMDVDPLLVRASLSH 73 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEccee--cCCCEEE-----EEEEEEEECCCCCChhhEEEEecC
Confidence 45678999999999999999999999984 999999985432 2233443 45999999999999999999995
Q ss_pred CCEEEEEEeC
Q 031266 137 NGVLTVTVPK 146 (162)
Q Consensus 137 ~GvL~I~lpK 146 (162)
||+|+|++||
T Consensus 74 dGvL~I~~Pr 83 (83)
T cd06476 74 DGILCIQAPR 83 (83)
T ss_pred CCEEEEEecC
Confidence 9999999997
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.87 E-value=1.1e-21 Score=132.19 Aligned_cols=83 Identities=28% Similarity=0.528 Sum_probs=72.4
Q ss_pred ECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEE-eCC
Q 031266 60 ETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASM-ENG 138 (162)
Q Consensus 60 e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~-~~G 138 (162)
+..++|.|.++|||++++||+|++.+ +.|+|+|++..........+. +.+|.|.|+|.||.+||.+.|+|+| +||
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~~dG 79 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREKKNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSLSPSG 79 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEeeecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEeCCCc
Confidence 45689999999999999999999997 599999998665444444554 3589999999999999999999999 999
Q ss_pred EEEEEEeC
Q 031266 139 VLTVTVPK 146 (162)
Q Consensus 139 vL~I~lpK 146 (162)
+|+|++|+
T Consensus 80 vL~I~~P~ 87 (87)
T cd06481 80 HLHIRAPR 87 (87)
T ss_pred eEEEEcCC
Confidence 99999995
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.87 E-value=2.9e-21 Score=128.93 Aligned_cols=88 Identities=61% Similarity=0.904 Sum_probs=80.6
Q ss_pred EEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEe
Q 031266 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASME 136 (162)
Q Consensus 57 di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 136 (162)
++.|++++|+|.++|||+++++|+|++.+ +.|.|+|++........ .+...++.++.|.|+|.||.++|.+.++|.|+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~~~~~~-~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~ 78 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEE-NYLRRERSYGSFSRSFRLPEDVDPDKIKASLE 78 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCC-cEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe
Confidence 47889999999999999999999999998 59999999986654333 78888999999999999999999999999999
Q ss_pred CCEEEEEEeC
Q 031266 137 NGVLTVTVPK 146 (162)
Q Consensus 137 ~GvL~I~lpK 146 (162)
||+|+|++||
T Consensus 79 ~G~L~I~~pk 88 (88)
T cd06464 79 NGVLTITLPK 88 (88)
T ss_pred CCEEEEEEcC
Confidence 9999999997
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.86 E-value=3.2e-21 Score=129.77 Aligned_cols=80 Identities=24% Similarity=0.336 Sum_probs=69.7
Q ss_pred CCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEeCC-E
Q 031266 61 TPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENG-V 139 (162)
Q Consensus 61 ~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~G-v 139 (162)
++++|+|.++|||++++||+|++.++ .|+|+|+++...+..+ ..|+.+|.|.|+|.||.+||.++|+|+|+|| +
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~-~L~I~ger~~~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~ 80 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDG-KVQVSAERENRYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSV 80 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEcCCCE
Confidence 57899999999999999999999985 9999999866533222 2478999999999999999999999999766 9
Q ss_pred EEEEEe
Q 031266 140 LTVTVP 145 (162)
Q Consensus 140 L~I~lp 145 (162)
|+|.-|
T Consensus 81 l~i~~~ 86 (87)
T cd06482 81 VKIETP 86 (87)
T ss_pred EEEeeC
Confidence 999877
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.85 E-value=1.4e-20 Score=125.56 Aligned_cols=79 Identities=25% Similarity=0.486 Sum_probs=68.1
Q ss_pred EECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEE-eC
Q 031266 59 KETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASM-EN 137 (162)
Q Consensus 59 ~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~-~~ 137 (162)
.|++++|+|.++|||++++||+|++.++ .|+|+|++..... ...+. .++|.|+|.||.+|+.++|+|+| +|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~ge~~~~~~--~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~~~~d 74 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEG-WLLIKGQHGVRMD--EHGFI-----SRSFTRQYQLPDGVEHKDLSAMLCHD 74 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEccccC--CCCEE-----EEEEEEEEECCCCcchheEEEEEcCC
Confidence 4688999999999999999999999985 9999999876432 23332 33899999999999999999998 89
Q ss_pred CEEEEEEe
Q 031266 138 GVLTVTVP 145 (162)
Q Consensus 138 GvL~I~lp 145 (162)
|||+|+.+
T Consensus 75 GvL~I~~~ 82 (83)
T cd06477 75 GILVVETK 82 (83)
T ss_pred CEEEEEec
Confidence 99999976
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.85 E-value=8.6e-21 Score=126.73 Aligned_cols=77 Identities=35% Similarity=0.602 Sum_probs=67.8
Q ss_pred CCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEeC-CEE
Q 031266 62 PEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMEN-GVL 140 (162)
Q Consensus 62 ~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~-GvL 140 (162)
+++|.|.++||||+++||+|++++ +.|+|+|++..... .. ++.++.|.|+|.||.+||.++++|+|.| |+|
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~~~--~~-----~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL 77 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEERED--EH-----GYVSREFTRRYQLPEGVDPDSVTSSLSSDGVL 77 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeeecc--CC-----CEEEEEEEEEEECCCCCChHHeEEEeCCCcEE
Confidence 369999999999999999999998 59999999876532 11 2456889999999999999999999988 999
Q ss_pred EEEEeC
Q 031266 141 TVTVPK 146 (162)
Q Consensus 141 ~I~lpK 146 (162)
+|++||
T Consensus 78 ~I~~Pk 83 (83)
T cd06526 78 TIEAPK 83 (83)
T ss_pred EEEecC
Confidence 999998
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.8e-20 Score=140.98 Aligned_cols=115 Identities=57% Similarity=0.907 Sum_probs=102.4
Q ss_pred CCcccccceeEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecC--CCCcEEEEeeeeeEEEEEEECCC
Q 031266 47 ETSAVVNARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIERED--KNDTWHRWERSSGMFSRRFRLPE 124 (162)
Q Consensus 47 ~~~~~~~p~~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~--~~~~~~~~e~~~g~f~r~~~LP~ 124 (162)
.....+.++.+|.|..++|++.+++||+.+++|+|+++++++|+|+|++..+.+. ....++..|+.+|.|.|.+.||+
T Consensus 78 ~~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPe 157 (196)
T KOG0710|consen 78 EAKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPE 157 (196)
T ss_pred cccccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCc
Confidence 3455566788899999999999999999999999999987689999998776553 56788999999999999999999
Q ss_pred CCCcCCeEEEEeCCEEEEEEeCcCcc--ccCCceEEeccC
Q 031266 125 NVKMDQIKASMENGVLTVTVPKVEEA--RKANAKAIEISG 162 (162)
Q Consensus 125 ~vd~~~i~A~~~~GvL~I~lpK~~~~--~~~~~~~I~I~~ 162 (162)
+++.+.|+|.|+||||+|++||.. + .....+.|+|+|
T Consensus 158 nv~~d~ikA~~~nGVL~VvvpK~~-~~~~~~~v~~i~i~~ 196 (196)
T KOG0710|consen 158 NVDVDEIKAEMENGVLTVVVPKLE-PLLKKPKVRQIAISG 196 (196)
T ss_pred cccHHHHHHHhhCCeEEEEEeccc-ccccCCccceeeccC
Confidence 999999999999999999999999 5 577788888875
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.74 E-value=2.2e-17 Score=111.85 Aligned_cols=81 Identities=21% Similarity=0.393 Sum_probs=69.7
Q ss_pred EEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEe-
Q 031266 58 WKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASME- 136 (162)
Q Consensus 58 i~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~- 136 (162)
+..++++|.|.+++.||+++||+|++.+ +.|+|+|++..... + ..+. .+.|.|+|.||.+||.+.|+|.+.
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~~~~-e-~g~~-----~r~F~R~~~LP~~Vd~~~v~s~l~~ 81 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEEQQK-E-GGIV-----SKNFTKKIQLPPEVDPVTVFASLSP 81 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECcccC-C-CCEE-----EEEEEEEEECCCCCCchhEEEEeCC
Confidence 4567889999999999999999999998 59999999876542 2 2333 467999999999999999999996
Q ss_pred CCEEEEEEeC
Q 031266 137 NGVLTVTVPK 146 (162)
Q Consensus 137 ~GvL~I~lpK 146 (162)
||+|+|.+|.
T Consensus 82 dGvL~IeaP~ 91 (91)
T cd06480 82 EGLLIIEAPQ 91 (91)
T ss_pred CCeEEEEcCC
Confidence 9999999983
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.8e-16 Score=116.05 Aligned_cols=99 Identities=24% Similarity=0.485 Sum_probs=84.5
Q ss_pred ceeEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEE
Q 031266 54 ARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKA 133 (162)
Q Consensus 54 p~~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 133 (162)
...++..++++|.|.+|+..|++++|+|++.+ +.|.|+|++.+.. ++..+. .++|.|++.||.+||++.|++
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHeer~--d~~G~v-----~R~F~R~y~LP~~vdp~~V~S 134 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEEKE--DEHGYV-----SRSFVRKYLLPEDVDPTSVTS 134 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeecccc--CCCCeE-----EEEEEEEecCCCCCChhheEE
Confidence 45788999999999999999999999999998 5999999987764 233333 346999999999999999999
Q ss_pred EE-eCCEEEEEEeCcCccccCCceEEecc
Q 031266 134 SM-ENGVLTVTVPKVEEARKANAKAIEIS 161 (162)
Q Consensus 134 ~~-~~GvL~I~lpK~~~~~~~~~~~I~I~ 161 (162)
.+ .||+|+|++||.. ......+.|+|+
T Consensus 135 ~LS~dGvLtI~ap~~~-~~~~~er~ipI~ 162 (173)
T KOG3591|consen 135 TLSSDGVLTIEAPKPP-PKQDNERSIPIE 162 (173)
T ss_pred eeCCCceEEEEccCCC-CcCccceEEeEe
Confidence 99 8999999999998 554457888875
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.60 E-value=1.7e-14 Score=93.03 Aligned_cols=80 Identities=56% Similarity=0.895 Sum_probs=70.8
Q ss_pred EEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEeC
Q 031266 58 WKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMEN 137 (162)
Q Consensus 58 i~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~ 137 (162)
+.++++.|.|.+++||+.+++|.|.+++ +.|.|+|....... .+...+.|.+.+.||..++++.++|.+.+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~~~--------~~~~~~~~~~~~~L~~~i~~~~~~~~~~~ 71 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEE--------RERSYGEFERSFELPEDVDPEKSKASLEN 71 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCCCc--------ceEeeeeEEEEEECCCCcCHHHCEEEEEC
Confidence 4678899999999999999999999998 59999999765422 34456789999999999999999999999
Q ss_pred CEEEEEEeC
Q 031266 138 GVLTVTVPK 146 (162)
Q Consensus 138 GvL~I~lpK 146 (162)
|+|+|.+||
T Consensus 72 ~~l~i~l~K 80 (80)
T cd00298 72 GVLEITLPK 80 (80)
T ss_pred CEEEEEEcC
Confidence 999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.35 E-value=8e-12 Score=81.84 Aligned_cols=70 Identities=24% Similarity=0.375 Sum_probs=63.6
Q ss_pred EEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEeC
Q 031266 58 WKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMEN 137 (162)
Q Consensus 58 i~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~ 137 (162)
+.++++.+.|.+++||+++++++|++++ +.|.|++. .|.+.+.||..||+++++|++.+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~~--------------------~~~~~~~l~~~I~~e~~~~~~~~ 59 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNFP--------------------PYLFELDLAAPIDDEKSSAKIGN 59 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcCC--------------------CEEEEEeCcccccccccEEEEeC
Confidence 3578899999999999999999999997 48998861 27889999999999999999999
Q ss_pred CEEEEEEeCcC
Q 031266 138 GVLTVTVPKVE 148 (162)
Q Consensus 138 GvL~I~lpK~~ 148 (162)
|.|.|+|+|.+
T Consensus 60 ~~l~i~L~K~~ 70 (78)
T cd06469 60 GVLVFTLVKKE 70 (78)
T ss_pred CEEEEEEEeCC
Confidence 99999999987
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.17 E-value=4.1e-10 Score=84.32 Aligned_cols=79 Identities=29% Similarity=0.516 Sum_probs=63.4
Q ss_pred ccccceeEEEECCC-eEEEEEEcCCCCCcc-eEEEEeCC-ceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCC
Q 031266 50 AVVNARVDWKETPE-AHVFKADLPGLRKEE-VKVEVEDD-RVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENV 126 (162)
Q Consensus 50 ~~~~p~~di~e~~~-~~~i~v~lPG~~~ed-I~v~v~~~-~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~v 126 (162)
....+.+++.+.++ .++|.++|||+++++ |+|.++.+ ..|+|+ .. +.+.+++.||..
T Consensus 88 ~~~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~--~~-----------------~~~~krv~L~~~- 147 (177)
T PF05455_consen 88 DEESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIR--VG-----------------EKYLKRVALPWP- 147 (177)
T ss_pred CcceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEe--cC-----------------CceEeeEecCCC-
Confidence 44567899999888 699999999999888 99999854 345554 21 125689999977
Q ss_pred CcCCeEEEEeCCEEEEEEeCcC
Q 031266 127 KMDQIKASMENGVLTVTVPKVE 148 (162)
Q Consensus 127 d~~~i~A~~~~GvL~I~lpK~~ 148 (162)
+++.++|.|+||||+|+|-+.+
T Consensus 148 ~~e~~~~t~nNgILEIri~~~~ 169 (177)
T PF05455_consen 148 DPEITSATFNNGILEIRIRRTE 169 (177)
T ss_pred ccceeeEEEeCceEEEEEeecC
Confidence 6788999999999999999887
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.06 E-value=2.2e-09 Score=70.23 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=65.3
Q ss_pred EECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEeCC
Q 031266 59 KETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENG 138 (162)
Q Consensus 59 ~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~G 138 (162)
.++++.+.|.+.+||+.+++++|.+++ +.|+|++.... .+.|...+.|+..|+++..++++.+|
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~---------------~~~~~~~~~L~~~I~~~~s~~~~~~~ 65 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG---------------GKEYLLEGELFGPIDPEESKWTVEDR 65 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCCC---------------CCceEEeeEccCccchhhcEEEEeCC
Confidence 578899999999999999999999997 59999987431 12377889999999999999999999
Q ss_pred EEEEEEeCcC
Q 031266 139 VLTVTVPKVE 148 (162)
Q Consensus 139 vL~I~lpK~~ 148 (162)
.|.|+|+|..
T Consensus 66 ~l~i~L~K~~ 75 (84)
T cd06463 66 KIEITLKKKE 75 (84)
T ss_pred EEEEEEEECC
Confidence 9999999987
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.84 E-value=2.2e-08 Score=66.15 Aligned_cols=76 Identities=24% Similarity=0.286 Sum_probs=66.1
Q ss_pred EEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEe
Q 031266 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASME 136 (162)
Q Consensus 57 di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 136 (162)
|++++++.+.|.+.+||+.++++.|.+++ +.|.|++... . .+.|...+.|...|+++..++++.
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~-----~----------~~~~~~~~~L~~~I~~~~s~~~~~ 64 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILP-----G----------GSEYQLELDLFGPIDPEQSKVSVL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECC-----C----------CCeEEEecccccccCchhcEEEEe
Confidence 57889999999999999999999999997 5899986642 0 123777889999999999999999
Q ss_pred CCEEEEEEeCcC
Q 031266 137 NGVLTVTVPKVE 148 (162)
Q Consensus 137 ~GvL~I~lpK~~ 148 (162)
+|.|.|+|.|..
T Consensus 65 ~~~vei~L~K~~ 76 (84)
T cd06466 65 PTKVEITLKKAE 76 (84)
T ss_pred CeEEEEEEEcCC
Confidence 999999999987
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.65 E-value=9.9e-07 Score=57.00 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=63.8
Q ss_pred ceeEEEECCCeEEEEEEcCCC--CCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCe
Q 031266 54 ARVDWKETPEAHVFKADLPGL--RKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQI 131 (162)
Q Consensus 54 p~~di~e~~~~~~i~v~lPG~--~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 131 (162)
|+++|.++++.+.|.+.+++. ++++|.|.+++ +.|.|+...... ..|...+.|...|+++..
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~~---------------~~~~~~~~L~~~I~~~~s 64 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGDG---------------KEYLLEGELFGEIDPDES 64 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETTS---------------CEEEEEEEBSS-BECCCE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccCC---------------ceEEEEEEEeeeEcchhc
Confidence 578999999999999999665 59999999998 599999664322 126678889999999999
Q ss_pred EEEEeCCEEEEEEeC
Q 031266 132 KASMENGVLTVTVPK 146 (162)
Q Consensus 132 ~A~~~~GvL~I~lpK 146 (162)
+.++.++.|.|+|.|
T Consensus 65 ~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 65 TWKVKDNKIEITLKK 79 (79)
T ss_dssp EEEEETTEEEEEEEB
T ss_pred EEEEECCEEEEEEEC
Confidence 999999999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.33 E-value=9.2e-06 Score=56.41 Aligned_cols=78 Identities=14% Similarity=0.281 Sum_probs=65.9
Q ss_pred ceeEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEE
Q 031266 54 ARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKA 133 (162)
Q Consensus 54 p~~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 133 (162)
|+++++++.+.+.|.+.+||+ +++.|.+.. +.|.|++.... .+ ..|.-.+.|...|+++..+.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~----~~----------~~y~~~~~L~~~I~pe~s~~ 63 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGG----GG----------KKYEFDLEFYKEIDPEESKY 63 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCC----CC----------eeEEEEeEhhhhccccccEE
Confidence 578999999999999999998 889999997 59999975321 11 12666789999999999999
Q ss_pred EEeCCEEEEEEeCcC
Q 031266 134 SMENGVLTVTVPKVE 148 (162)
Q Consensus 134 ~~~~GvL~I~lpK~~ 148 (162)
++.++.|.|+|.|..
T Consensus 64 ~v~~~kveI~L~K~~ 78 (108)
T cd06465 64 KVTGRQIEFVLRKKE 78 (108)
T ss_pred EecCCeEEEEEEECC
Confidence 999999999999976
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.22 E-value=7.6e-06 Score=66.93 Aligned_cols=65 Identities=31% Similarity=0.531 Sum_probs=56.6
Q ss_pred CCeEEEEEEcCCC-CCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEE--eCC
Q 031266 62 PEAHVFKADLPGL-RKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASM--ENG 138 (162)
Q Consensus 62 ~~~~~i~v~lPG~-~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~--~~G 138 (162)
.+.++|++.|||+ +..+|+|.|.+ +.|.|..... .|.-.+.||..||.+..+|.| +.+
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~------------------~y~L~l~LP~~V~~~~~~Akf~~~~~ 320 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKP------------------KYRLDLPLPYPVDEDNGKAKFDKKTK 320 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCC------------------ceEEEccCCCcccCCCceEEEccCCC
Confidence 4789999999999 78999999998 5899985532 266789999999999999999 568
Q ss_pred EEEEEEe
Q 031266 139 VLTVTVP 145 (162)
Q Consensus 139 vL~I~lp 145 (162)
+|+|+||
T Consensus 321 ~L~vtlp 327 (328)
T PF08190_consen 321 TLTVTLP 327 (328)
T ss_pred EEEEEEE
Confidence 9999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.13 E-value=2.8e-05 Score=51.50 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=63.6
Q ss_pred EEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEe
Q 031266 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASME 136 (162)
Q Consensus 57 di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 136 (162)
|++++++...|.+.++|+.++++.|++++ +.|.+++.... +. .|.-.+.|...|+++..+.+..
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~-----~~----------~y~~~~~L~~~I~p~~s~~~v~ 64 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPS-----GN----------DYSLKLHLLHPIVPEQSSYKIL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCC-----CC----------cEEEeeecCceecchhcEEEEe
Confidence 57889999999999999999999999998 58999876421 10 2556778999999998888888
Q ss_pred CCEEEEEEeCcC
Q 031266 137 NGVLTVTVPKVE 148 (162)
Q Consensus 137 ~GvL~I~lpK~~ 148 (162)
.+-+.|+|.|..
T Consensus 65 ~~kiei~L~K~~ 76 (84)
T cd06489 65 STKIEIKLKKTE 76 (84)
T ss_pred CcEEEEEEEcCC
Confidence 889999999976
No 31
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.97 E-value=0.00018 Score=48.28 Aligned_cols=78 Identities=13% Similarity=0.301 Sum_probs=63.6
Q ss_pred eeEEEECCCeEEEEEEcCCCCC---cceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEE-CCCCCCcCC
Q 031266 55 RVDWKETPEAHVFKADLPGLRK---EEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFR-LPENVKMDQ 130 (162)
Q Consensus 55 ~~di~e~~~~~~i~v~lPG~~~---edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~-LP~~vd~~~ 130 (162)
.+++.++++.+.|.+.+|+... ++++|.++. +.|.|++... ++. .|.-.+. |-..|+++.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~-----~~~----------~~~~~~~~L~~~I~~e~ 66 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDL-----NGK----------NYRFTINRLLKKIDPEK 66 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECC-----CCc----------EEEEEehHhhCccCccc
Confidence 4789999999999999999976 999999998 4899987421 111 1334453 889999999
Q ss_pred eEEEEeCCEEEEEEeCcC
Q 031266 131 IKASMENGVLTVTVPKVE 148 (162)
Q Consensus 131 i~A~~~~GvL~I~lpK~~ 148 (162)
.+.+...+-+.|+|.|.+
T Consensus 67 s~~~~~~~ki~i~L~K~~ 84 (92)
T cd06468 67 SSFKVKTDRIVITLAKKK 84 (92)
T ss_pred cEEEEeCCEEEEEEEeCC
Confidence 999999999999999987
No 32
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.94 E-value=0.00017 Score=48.21 Aligned_cols=78 Identities=22% Similarity=0.192 Sum_probs=65.8
Q ss_pred eeEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEE
Q 031266 55 RVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKAS 134 (162)
Q Consensus 55 ~~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 134 (162)
++|++++++...|.+.+.|+.++++.+.+++ +.|.|+..... + ..|.-.+.|-..|+++..+.+
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~-----~----------~~y~~~l~L~~~I~~~~s~~~ 65 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG-----N----------KEFQLDIELWGVIDVEKSSVN 65 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC-----C----------ceEEEEeeccceEChhHcEEE
Confidence 4799999999999999999999999999987 48888755321 0 126677889999999998888
Q ss_pred EeCCEEEEEEeCcC
Q 031266 135 MENGVLTVTVPKVE 148 (162)
Q Consensus 135 ~~~GvL~I~lpK~~ 148 (162)
...+-+.|+|.|.+
T Consensus 66 v~~~kvei~L~K~~ 79 (87)
T cd06488 66 MLPTKVEIKLRKAE 79 (87)
T ss_pred ecCcEEEEEEEeCC
Confidence 89999999999987
No 33
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.87 E-value=0.0002 Score=47.18 Aligned_cols=74 Identities=24% Similarity=0.376 Sum_probs=60.6
Q ss_pred eEEEECCCeEEEEEEcC-CCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEE
Q 031266 56 VDWKETPEAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKAS 134 (162)
Q Consensus 56 ~di~e~~~~~~i~v~lP-G~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 134 (162)
+.+.++++.+.|.+.+| ++.+++|.|.+.+ +.|.|+... + . +.-...|...|+++....+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~-------~-~----------~~l~~~L~~~I~~~~s~w~ 61 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG-------G-E----------PLLDGELYAKVKVDESTWT 61 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC-------C-C----------ceEcCcccCceeEcCCEEE
Confidence 36788999999999998 7899999999998 589998642 0 0 1123358899999998889
Q ss_pred EeC-CEEEEEEeCcC
Q 031266 135 MEN-GVLTVTVPKVE 148 (162)
Q Consensus 135 ~~~-GvL~I~lpK~~ 148 (162)
+.+ ..|.|+|+|.+
T Consensus 62 ~~~~~~v~i~L~K~~ 76 (85)
T cd06467 62 LEDGKLLEITLEKRN 76 (85)
T ss_pred EeCCCEEEEEEEECC
Confidence 999 99999999987
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.77 E-value=0.00038 Score=46.22 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=58.9
Q ss_pred eEEEECCCeEEEEEEcC-CCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEE
Q 031266 56 VDWKETPEAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKAS 134 (162)
Q Consensus 56 ~di~e~~~~~~i~v~lP-G~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 134 (162)
+++.++.+...|.+.+| |+.++|++|++.. +.|.|.... . . .+ -.-.|...|+++...-+
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~~-~-------~---------~~-~~g~L~~~I~~d~Stw~ 61 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALKD-Q-------A---------PL-LEGKLYSSIDHESSTWI 61 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeCC-C-------C---------eE-EeCcccCcccccCcEEE
Confidence 46788999999999996 9999999999998 588887421 0 0 01 23368899999988888
Q ss_pred EeCC-EEEEEEeCcC
Q 031266 135 MENG-VLTVTVPKVE 148 (162)
Q Consensus 135 ~~~G-vL~I~lpK~~ 148 (162)
+.+| .|.|+|.|.+
T Consensus 62 i~~~~~l~i~L~K~~ 76 (85)
T cd06493 62 IKENKSLEVSLIKKD 76 (85)
T ss_pred EeCCCEEEEEEEECC
Confidence 8777 7999999987
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.54 E-value=0.0014 Score=44.56 Aligned_cols=76 Identities=17% Similarity=0.337 Sum_probs=61.4
Q ss_pred cceeEEEECCCeEEEEEEcC-CCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCe
Q 031266 53 NARVDWKETPEAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQI 131 (162)
Q Consensus 53 ~p~~di~e~~~~~~i~v~lP-G~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 131 (162)
.+.+.+.++.+.+.|.+.+| |+++.|+.|.+... .|.|.... . . .-.| .|...|+++..
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~-~l~V~~~g--~------~-----~l~G------~L~~~I~~des 64 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSR-DISLAVKG--Q------E-----VLKG------KLFDSVVADEC 64 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcC-EEEEEECC--E------E-----EEcC------cccCccCcccC
Confidence 36789999999999999999 99999999999984 88887421 0 0 0112 57889999999
Q ss_pred EEEEeCCE-EEEEEeCcC
Q 031266 132 KASMENGV-LTVTVPKVE 148 (162)
Q Consensus 132 ~A~~~~Gv-L~I~lpK~~ 148 (162)
.-++++|- |.|.|.|..
T Consensus 65 tWtled~k~l~I~L~K~~ 82 (93)
T cd06494 65 TWTLEDRKLIRIVLTKSN 82 (93)
T ss_pred EEEEECCcEEEEEEEeCC
Confidence 99998775 899999986
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.48 E-value=0.0027 Score=44.13 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=61.0
Q ss_pred ceeEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEE
Q 031266 54 ARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKA 133 (162)
Q Consensus 54 p~~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 133 (162)
|++++.++.+.+.|++.+|+ ..+++|++++ +.|+++|... ++. .|.-.+.|=..|+++..+.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~-----~g~----------~y~~~l~l~~~I~pe~Sk~ 63 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG-----DNV----------KIYNEIELYDRVDPNDSKH 63 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC-----CCc----------EEEEEEEeecccCcccCeE
Confidence 77999999999999999999 5789999987 4899998431 111 1445677888899997777
Q ss_pred EEeCCEEEEEEeCcC
Q 031266 134 SMENGVLTVTVPKVE 148 (162)
Q Consensus 134 ~~~~GvL~I~lpK~~ 148 (162)
+...--+.|.+.|++
T Consensus 64 ~v~~r~ve~~L~K~~ 78 (106)
T cd00237 64 KRTDRSILCCLRKGK 78 (106)
T ss_pred EeCCceEEEEEEeCC
Confidence 777778888999986
No 37
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=97.37 E-value=0.00092 Score=50.39 Aligned_cols=80 Identities=21% Similarity=0.284 Sum_probs=63.6
Q ss_pred cceeEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeE
Q 031266 53 NARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIK 132 (162)
Q Consensus 53 ~p~~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 132 (162)
.+++|++++....+|.+-.+++.++|++|.+.+ ++|.+..+-.... .|.-...|-..|.++..+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~g~---------------~~~l~~~L~~~I~pe~~s 66 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPSGS---------------EYNLQLKLYHEIIPEKSS 66 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCCch---------------hhhhhHHhccccccccee
Confidence 367899999999999999999999999999997 6888886654221 144455577888888877
Q ss_pred EEEeCCEEEEEEeCcC
Q 031266 133 ASMENGVLTVTVPKVE 148 (162)
Q Consensus 133 A~~~~GvL~I~lpK~~ 148 (162)
-+.----+.|+|+|..
T Consensus 67 ~k~~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 67 FKVFSTKVEITLAKAE 82 (196)
T ss_pred eEeeeeeEEEEecccc
Confidence 7777777889998854
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.07 E-value=0.0042 Score=51.76 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=66.5
Q ss_pred cceeEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeE
Q 031266 53 NARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIK 132 (162)
Q Consensus 53 ~p~~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 132 (162)
.++.||+++++.+.|.|.+.|+.++++.|.+.+ +.|.|+...... ..|...+.|-..|+++..+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~~---------------~~y~~~~~L~~~I~p~~s~ 219 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPGE---------------DAYHLQPRLFGKIIPDKCK 219 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCCC---------------cceeecccccccccccccE
Confidence 477999999999999999999999999999997 588888653211 1255567888999999988
Q ss_pred EEEeCCEEEEEEeCcC
Q 031266 133 ASMENGVLTVTVPKVE 148 (162)
Q Consensus 133 A~~~~GvL~I~lpK~~ 148 (162)
.+..-.-+.|+|.|..
T Consensus 220 ~~v~~~Kiei~l~K~~ 235 (356)
T PLN03088 220 YEVLSTKIEIRLAKAE 235 (356)
T ss_pred EEEecceEEEEEecCC
Confidence 8887779999999876
No 39
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.62 E-value=0.028 Score=37.52 Aligned_cols=73 Identities=22% Similarity=0.327 Sum_probs=55.5
Q ss_pred EEEECCCeEEEEEEcC-C--CCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEE
Q 031266 57 DWKETPEAHVFKADLP-G--LRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKA 133 (162)
Q Consensus 57 di~e~~~~~~i~v~lP-G--~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 133 (162)
.+..+.+...|.+.+| | ++..||+|.+... .|.|..+.. ... -.=.|...|+++...-
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~-~l~v~~~g~--------~~~----------i~G~L~~~V~~des~W 62 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRK-HLKVGLKGQ--------PPI----------IDGELYNEVKVEESSW 62 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEecC-EEEEEECCC--------ceE----------EeCcccCcccccccEE
Confidence 3567788899999997 4 8899999999984 888864211 111 1225788899998888
Q ss_pred EEeCC-EEEEEEeCcC
Q 031266 134 SMENG-VLTVTVPKVE 148 (162)
Q Consensus 134 ~~~~G-vL~I~lpK~~ 148 (162)
.+++| .|.|+|-|..
T Consensus 63 tled~~~l~i~L~K~~ 78 (87)
T cd06492 63 LIEDGKVVTVNLEKIN 78 (87)
T ss_pred EEeCCCEEEEEEEECC
Confidence 89886 8999999986
No 40
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.53 E-value=0.067 Score=35.61 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=55.0
Q ss_pred eEEEECCCeEEEEEEcCC--CCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEE
Q 031266 56 VDWKETPEAHVFKADLPG--LRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKA 133 (162)
Q Consensus 56 ~di~e~~~~~~i~v~lPG--~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 133 (162)
.|++.+++...|.+-..+ .++.++.+.... +.|.|+-... . . .|...+.|=..|+.+. +.
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~-~---~------------~~~~~~~L~~~I~~~~-~~ 62 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILG-D---K------------SYLLHLDLSNEVQWPC-EV 62 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECC-C---c------------eEEEeeeccccCCCCc-EE
Confidence 488999999999999885 455556666555 4788875432 1 1 1667778888898775 55
Q ss_pred EEe--CCEEEEEEeCcC
Q 031266 134 SME--NGVLTVTVPKVE 148 (162)
Q Consensus 134 ~~~--~GvL~I~lpK~~ 148 (162)
++. -|-+.|+|.|.+
T Consensus 63 ~~~~~~~KVEI~L~K~e 79 (87)
T cd06490 63 RISTETGKIELVLKKKE 79 (87)
T ss_pred EEcccCceEEEEEEcCC
Confidence 554 789999999987
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.02 E-value=0.13 Score=35.43 Aligned_cols=80 Identities=14% Similarity=0.341 Sum_probs=60.3
Q ss_pred cceeEEEECCCeEEEEEEcC-CC-CCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCC
Q 031266 53 NARVDWKETPEAHVFKADLP-GL-RKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQ 130 (162)
Q Consensus 53 ~p~~di~e~~~~~~i~v~lP-G~-~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 130 (162)
...+.+..+-+...|.+.|| |. +..+|.|.+.. +.|.|.-... .+.... -.| .|...|+.+.
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~-----~~~~~~----i~G------~L~~~V~~de 67 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDG-----GGEKVL----MEG------EFTHKINTEN 67 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecC-----CCCceE----EeC------cccCcccCcc
Confidence 35689999999999999999 64 57899999998 4888875420 000011 011 5888999999
Q ss_pred eEEEEeCC-EEEEEEeCcC
Q 031266 131 IKASMENG-VLTVTVPKVE 148 (162)
Q Consensus 131 i~A~~~~G-vL~I~lpK~~ 148 (162)
..-.+++| .|.|+|-|..
T Consensus 68 s~Wtled~~~l~I~L~K~~ 86 (102)
T cd06495 68 SLWSLEPGKCVLLSLSKCS 86 (102)
T ss_pred ceEEEeCCCEEEEEEEECC
Confidence 89999886 5899999976
No 42
>PF14913 DPCD: DPCD protein family
Probab=92.02 E-value=1.9 Score=32.98 Aligned_cols=81 Identities=17% Similarity=0.356 Sum_probs=60.3
Q ss_pred cccccceeEEEECCCeEEEEE-EcCCCCCcceEEEEeCC-ceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCC-
Q 031266 49 SAVVNARVDWKETPEAHVFKA-DLPGLRKEEVKVEVEDD-RVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPEN- 125 (162)
Q Consensus 49 ~~~~~p~~di~e~~~~~~i~v-~lPG~~~edI~v~v~~~-~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~- 125 (162)
.+...|-+-=..+...|+-++ .||. .++-.+|+++++ +.++|+...+ .|.+.|.+|+-
T Consensus 82 ESs~nP~~~r~dTk~~fqWRIRNLPY-P~dvYsVtvd~~~r~ivvRTtNK------------------KYyKk~~IPDl~ 142 (194)
T PF14913_consen 82 ESSSNPIFVRRDTKTSFQWRIRNLPY-PKDVYSVTVDEDERCIVVRTTNK------------------KYYKKFSIPDLD 142 (194)
T ss_pred ecCCCCEEEEEcCccceEEEEccCCC-CccceEEEEcCCCcEEEEECcCc------------------cceeEecCCcHH
Confidence 344556666677888999998 6775 778888888854 5788884321 26788999942
Q ss_pred -----CCcCCeEEEEeCCEEEEEEeCcC
Q 031266 126 -----VKMDQIKASMENGVLTVTVPKVE 148 (162)
Q Consensus 126 -----vd~~~i~A~~~~GvL~I~lpK~~ 148 (162)
.+.+.++..+.|..|.|+-.|..
T Consensus 143 R~~l~l~~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 143 RCGLPLEQSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred hhCCCcchhhceeeeecCeEEEEecCcH
Confidence 46677889999999999998865
No 43
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=90.15 E-value=3.7 Score=31.01 Aligned_cols=78 Identities=18% Similarity=0.321 Sum_probs=58.3
Q ss_pred ccceeEEEECCCeEEEEEEcC-CC-CCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcC
Q 031266 52 VNARVDWKETPEAHVFKADLP-GL-RKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMD 129 (162)
Q Consensus 52 ~~p~~di~e~~~~~~i~v~lP-G~-~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~ 129 (162)
..+.+.+..+=..+.|.|.+| |+ +..+|.|.+.. +.|.|.-+.... + -.=.|...|+.+
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~~--------i----------ldG~L~~~vk~d 77 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQPP--------I----------LDGELSHSVKVD 77 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCCc--------e----------ecCccccccccc
Confidence 346688888889999999888 88 88899999997 577776433221 0 111377889999
Q ss_pred CeEEEEeCCEEEEEEeCcC
Q 031266 130 QIKASMENGVLTVTVPKVE 148 (162)
Q Consensus 130 ~i~A~~~~GvL~I~lpK~~ 148 (162)
...-++++|.+.|.+-++.
T Consensus 78 es~WtiEd~k~i~i~l~K~ 96 (179)
T KOG2265|consen 78 ESTWTIEDGKMIVILLKKS 96 (179)
T ss_pred cceEEecCCEEEEEEeecc
Confidence 9999999998887776665
No 44
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=86.64 E-value=9.9 Score=27.39 Aligned_cols=82 Identities=17% Similarity=0.239 Sum_probs=50.5
Q ss_pred ceeEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEE
Q 031266 54 ARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKA 133 (162)
Q Consensus 54 p~~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 133 (162)
..+.|...++ ..+++.. ..+.++++.+++ .|.|+.+..... ....+..... ...-.-.+.||.....++++.
T Consensus 66 ~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~-~L~I~~~~~~~~--~~~~~~~~~~-~~~~~i~I~lP~~~~l~~i~i 137 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEY---NGKKPEISVEGG-TLTIKSKDRESF--FFKGFNFNNS-DNKSKITIYLPKDYKLDKIDI 137 (166)
T ss_pred eeEEEEEcCC-ccEEEEE---cCcEEEEEEcCC-EEEEEEeccccc--ccceEEEccc-CCCcEEEEEECCCCceeEEEE
Confidence 4466666443 4445554 212688888874 999997722110 0111211111 234567899999998899999
Q ss_pred EEeCCEEEEE
Q 031266 134 SMENGVLTVT 143 (162)
Q Consensus 134 ~~~~GvL~I~ 143 (162)
.-.+|-++|.
T Consensus 138 ~~~~G~i~i~ 147 (166)
T PF13349_consen 138 KTSSGDITIE 147 (166)
T ss_pred EeccccEEEE
Confidence 9999988765
No 45
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=82.74 E-value=0.92 Score=36.85 Aligned_cols=85 Identities=24% Similarity=0.159 Sum_probs=64.5
Q ss_pred cccccceeEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCc
Q 031266 49 SAVVNARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKM 128 (162)
Q Consensus 49 ~~~~~p~~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~ 128 (162)
.......+++.++.+...|-+.-|-+..++|++-++. |+|.|+-+.+.... -+.-.+.|-..|++
T Consensus 172 ~~~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~~~~--------------~~~~~~~Ly~ev~P 236 (368)
T COG5091 172 SPKMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRRLRL--------------WNDITISLYKEVYP 236 (368)
T ss_pred CccceeeeeccccceeEEEEEecCCCCccccceeecC-Ccceeeeeccccch--------------HHHhhhhhhhhcCc
Confidence 3445567888999999999999999999999999996 79999966432211 13356677788888
Q ss_pred CCeEEEEeCCEEEEEEeCcC
Q 031266 129 DQIKASMENGVLTVTVPKVE 148 (162)
Q Consensus 129 ~~i~A~~~~GvL~I~lpK~~ 148 (162)
+..+-+.--.++.|++.|..
T Consensus 237 ~~~s~k~fsK~~e~~l~KV~ 256 (368)
T COG5091 237 DIRSIKSFSKRVEVHLRKVE 256 (368)
T ss_pred chhhhhhcchhheehhhhhh
Confidence 88777765578888887765
No 46
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=80.56 E-value=8.2 Score=29.17 Aligned_cols=79 Identities=11% Similarity=0.235 Sum_probs=56.2
Q ss_pred ccceeEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCe
Q 031266 52 VNARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQI 131 (162)
Q Consensus 52 ~~p~~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 131 (162)
..|.+-+.+..+.+.+++.++-.+ +..|.++. ..|+++|+.... . -.+...|.|=..||+++.
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ved~~--d~~v~~e~-~~l~fs~k~~~d------~--------~~~~~~ief~~eIdpe~s 68 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVEDAK--DVHVNLEP-SKLTFSCKSGAD------N--------HKYENEIEFFDEIDPEKS 68 (180)
T ss_pred cCCcchhhhhcCeEEEEEEeccCc--cceeeccc-cEEEEEeccCCC------c--------eeeEEeeehhhhcCHhhc
Confidence 457889999999999999998654 55556665 489999886421 1 125567888889999987
Q ss_pred EEEEeCCEEEEEEeCcC
Q 031266 132 KASMENGVLTVTVPKVE 148 (162)
Q Consensus 132 ~A~~~~GvL~I~lpK~~ 148 (162)
+-+-. +-....++++.
T Consensus 69 k~k~~-~r~if~i~~K~ 84 (180)
T KOG3158|consen 69 KHKRT-SRSIFCILRKK 84 (180)
T ss_pred ccccc-ceEEEEEEEcc
Confidence 77766 55555555544
No 47
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=79.78 E-value=11 Score=30.40 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=67.7
Q ss_pred cccceeEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCC
Q 031266 51 VVNARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQ 130 (162)
Q Consensus 51 ~~~p~~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 130 (162)
...-+.|+..++..++|.|..-|.-++.-.|..+. ..|.|+-..... -..|...+.|=.-|+++.
T Consensus 212 V~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~ivf~~g--------------na~fd~d~kLwgvvnve~ 276 (320)
T KOG1667|consen 212 VVKCRHDWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSIVFGFG--------------NASFDLDYKLWGVVNVEE 276 (320)
T ss_pred cccchhhhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEEEecCC--------------Cceeeccceeeeeechhh
Confidence 45567899999999999999999999988888885 688888665321 113777778877899999
Q ss_pred eEEEEeCCEEEEEEeCcC
Q 031266 131 IKASMENGVLTVTVPKVE 148 (162)
Q Consensus 131 i~A~~~~GvL~I~lpK~~ 148 (162)
.++.+-.--+.|+|+|.+
T Consensus 277 s~v~m~~tkVEIsl~k~e 294 (320)
T KOG1667|consen 277 SSVVMGETKVEISLKKAE 294 (320)
T ss_pred ceEEeecceEEEEEeccC
Confidence 999998889999999988
No 48
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=78.14 E-value=5.4 Score=26.24 Aligned_cols=30 Identities=17% Similarity=0.437 Sum_probs=26.3
Q ss_pred eEEEEEEcC-CCCCcceEEEE-eCCceEEEEEE
Q 031266 64 AHVFKADLP-GLRKEEVKVEV-EDDRVLQISGQ 94 (162)
Q Consensus 64 ~~~i~v~lP-G~~~edI~v~v-~~~~~L~I~g~ 94 (162)
.|.=++.|| +++.+.|+-.+ ++| .|+|.|.
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~dG-vL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCHDG-ILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcCCC-EEEEEec
Confidence 677789999 99999999997 677 9999975
No 49
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=77.78 E-value=8.5 Score=25.58 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=28.3
Q ss_pred CeEEEEEEcC-CCCCcceEEEEeCCceEEEEEEEcceec
Q 031266 63 EAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRGIERE 100 (162)
Q Consensus 63 ~~~~i~v~lP-G~~~edI~v~v~~~~~L~I~g~~~~~~~ 100 (162)
..|.-.+.|| +++.+.|+..+.+| .|+|+..+.....
T Consensus 55 ~~f~r~~~lP~~vd~~~i~a~~~~G-vL~I~~pk~~~~~ 92 (102)
T PF00011_consen 55 GSFERSIRLPEDVDPDKIKASYENG-VLTITIPKKEEEE 92 (102)
T ss_dssp EEEEEEEE-STTB-GGG-EEEETTS-EEEEEEEBSSSCT
T ss_pred ceEEEEEcCCCcCCcceEEEEecCC-EEEEEEEcccccc
Confidence 4677789999 88999999999987 9999998876543
No 50
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=77.33 E-value=5.8 Score=26.36 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=29.2
Q ss_pred EEEEEEECCCCCCcCCeEEEEeCCEEEEEEeCcC
Q 031266 115 MFSRRFRLPENVKMDQIKASMENGVLTVTVPKVE 148 (162)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 148 (162)
.|.-...|| +++.+.|+.++.+|.|+|+.-+..
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~ 41 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAEREN 41 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 477788999 889999999999999999998765
No 51
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=76.88 E-value=5.2 Score=25.43 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=28.6
Q ss_pred CCCeEEEEEEcC-CCCCcceEEEEeCCceEEEEEE
Q 031266 61 TPEAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQ 94 (162)
Q Consensus 61 ~~~~~~i~v~lP-G~~~edI~v~v~~~~~L~I~g~ 94 (162)
....|.-.+.|| +++.+.++..+.+| .|+|+..
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~G-~L~I~~p 87 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLENG-VLTITLP 87 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeCC-EEEEEEc
Confidence 467899999999 88999999999997 9999853
No 52
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=75.51 E-value=5.1 Score=25.92 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=26.9
Q ss_pred CeEEEEEEcC-CCCCcceEEEEeC-CceEEEEEE
Q 031266 63 EAHVFKADLP-GLRKEEVKVEVED-DRVLQISGQ 94 (162)
Q Consensus 63 ~~~~i~v~lP-G~~~edI~v~v~~-~~~L~I~g~ 94 (162)
..|.-.+.|| +++.+.++-.+.+ | .|+|++.
T Consensus 50 ~~f~r~~~LP~~vd~~~i~A~~~~~G-vL~I~~P 82 (83)
T cd06526 50 REFTRRYQLPEGVDPDSVTSSLSSDG-VLTIEAP 82 (83)
T ss_pred EEEEEEEECCCCCChHHeEEEeCCCc-EEEEEec
Confidence 4688889999 8899999999997 6 9999864
No 53
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=74.10 E-value=6.1 Score=26.03 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=25.8
Q ss_pred CeEEEEEEcCCCCCcceEEEEeCCceEEEEE
Q 031266 63 EAHVFKADLPGLRKEEVKVEVEDDRVLQISG 93 (162)
Q Consensus 63 ~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g 93 (162)
..|.-.+.||.+..+.++-++.+| .|+|+.
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dG-vL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENG-VLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECC-EEEEEE
Confidence 457777899999999999999997 999984
No 54
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=72.72 E-value=15 Score=24.19 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=29.4
Q ss_pred EEEEEEECCCCCCcCCeEEEEeCCEEEEEEeCcC
Q 031266 115 MFSRRFRLPENVKMDQIKASMENGVLTVTVPKVE 148 (162)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 148 (162)
.|.-.+.|| ++..+.|+-.++++.|+|+..+..
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~ 44 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEVENNQLTVTGKKAD 44 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 578899999 689999999999999999987766
No 55
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=72.01 E-value=9.1 Score=25.68 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=25.6
Q ss_pred CeEEEEEEcC-CCCCcceEEEEe-CCceEEEEE
Q 031266 63 EAHVFKADLP-GLRKEEVKVEVE-DDRVLQISG 93 (162)
Q Consensus 63 ~~~~i~v~lP-G~~~edI~v~v~-~~~~L~I~g 93 (162)
..|.=.+.|| +++.++|+-.+. +| .|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dG-vL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEG-LLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCC-eEEEEc
Confidence 4567778999 999999999998 65 999986
No 56
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=71.24 E-value=12 Score=24.40 Aligned_cols=33 Identities=9% Similarity=0.179 Sum_probs=28.8
Q ss_pred EEEEEEECCCCCCcCCeEEEEeCCEEEEEEeCcC
Q 031266 115 MFSRRFRLPENVKMDQIKASMENGVLTVTVPKVE 148 (162)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 148 (162)
.|.-.+.|| +++++.|+-++.+|.|+|+.-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHEE 40 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEce
Confidence 477889999 899999999999999999986543
No 57
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=71.16 E-value=8 Score=25.47 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=27.3
Q ss_pred CCeEEEEEEcC-CCCCcceEEEEeCCceEEEEE
Q 031266 62 PEAHVFKADLP-GLRKEEVKVEVEDDRVLQISG 93 (162)
Q Consensus 62 ~~~~~i~v~lP-G~~~edI~v~v~~~~~L~I~g 93 (162)
...|.-.+.|| +++.+.|+-++.+| .|+|+.
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nG-vL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENG-VLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECC-EEEEEe
Confidence 45888999999 78999999999997 999984
No 58
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=71.12 E-value=17 Score=24.62 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=30.7
Q ss_pred cceeEEEECCCeEEEEEEcCCC-----CCcceEEEEeCCceEEEE
Q 031266 53 NARVDWKETPEAHVFKADLPGL-----RKEEVKVEVEDDRVLQIS 92 (162)
Q Consensus 53 ~p~~di~e~~~~~~i~v~lPG~-----~~edI~v~v~~~~~L~I~ 92 (162)
.|++.|+++++.|.|.+--+.- .++...|+-++| .+.|.
T Consensus 25 ~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI~ 68 (95)
T PF12992_consen 25 KPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFIE 68 (95)
T ss_pred CCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEEe
Confidence 5999999999999999866643 667777887776 66665
No 59
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=70.74 E-value=10 Score=24.78 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=28.5
Q ss_pred EEEEEEECCCCCCcCCeEEEEeCCEEEEEEeCcC
Q 031266 115 MFSRRFRLPENVKMDQIKASMENGVLTVTVPKVE 148 (162)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 148 (162)
.|.-.+.|| ++.++.|+.++.||.|+|..-+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 477788898 788999999999999999987644
No 60
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=70.55 E-value=17 Score=22.45 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=31.5
Q ss_pred eeEEE-ECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEE
Q 031266 55 RVDWK-ETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQR 95 (162)
Q Consensus 55 ~~di~-e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~ 95 (162)
++.+. -..+.|.|++..+|+..-.-.|.+..|....|+..-
T Consensus 26 p~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 26 PLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTL 67 (71)
T ss_pred cceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEE
Confidence 34555 457799999999999998888888866677777553
No 61
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=70.37 E-value=11 Score=24.68 Aligned_cols=33 Identities=6% Similarity=0.156 Sum_probs=28.5
Q ss_pred EEEEEEECCCCCCcCCeEEEEeCCEEEEEEeCcC
Q 031266 115 MFSRRFRLPENVKMDQIKASMENGVLTVTVPKVE 148 (162)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 148 (162)
.|.-.+.|| +++++.|+-+..+|.|+|+--+.+
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHSE 43 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 477888898 889999999999999999986544
No 62
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=69.92 E-value=9.2 Score=25.07 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=26.4
Q ss_pred eEEEEEEcC-CCCCcceEEEEe-CCceEEEEEEE
Q 031266 64 AHVFKADLP-GLRKEEVKVEVE-DDRVLQISGQR 95 (162)
Q Consensus 64 ~~~i~v~lP-G~~~edI~v~v~-~~~~L~I~g~~ 95 (162)
+|.=.+.|| +++.+.|+-++. +| .|+|+..+
T Consensus 51 eF~R~~~LP~~vd~~~i~A~~~~dG-vL~I~lPk 83 (84)
T cd06498 51 EFQRKYRIPADVDPLTITSSLSPDG-VLTVCGPR 83 (84)
T ss_pred EEEEEEECCCCCChHHcEEEeCCCC-EEEEEEeC
Confidence 377788999 899999999995 87 99998754
No 63
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=69.79 E-value=7 Score=25.78 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=27.5
Q ss_pred CCeEEEEEEcC-CCCCcceEEEE-eCCceEEEEEE
Q 031266 62 PEAHVFKADLP-GLRKEEVKVEV-EDDRVLQISGQ 94 (162)
Q Consensus 62 ~~~~~i~v~lP-G~~~edI~v~v-~~~~~L~I~g~ 94 (162)
...|.=.+.|| +++.+.|+-.+ .+| .|+|++-
T Consensus 53 ~~~F~R~~~LP~~Vd~~~i~A~~~~dG-vL~I~~P 86 (87)
T cd06481 53 YQEFVREAQLPEHVDPEAVTCSLSPSG-HLHIRAP 86 (87)
T ss_pred eeEEEEEEECCCCcChHHeEEEeCCCc-eEEEEcC
Confidence 46788899999 89999999999 786 9999853
No 64
>PRK10743 heat shock protein IbpA; Provisional
Probab=69.43 E-value=18 Score=26.10 Aligned_cols=32 Identities=6% Similarity=0.238 Sum_probs=26.4
Q ss_pred EEEEEECCCCCCcCCeEEEEeCCEEEEEEeCcC
Q 031266 116 FSRRFRLPENVKMDQIKASMENGVLTVTVPKVE 148 (162)
Q Consensus 116 f~r~~~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 148 (162)
|.-...|| +++.++|+-++++|+|+|..-+..
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 44556688 889999999999999999987655
No 65
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=66.68 E-value=14 Score=24.08 Aligned_cols=33 Identities=12% Similarity=0.231 Sum_probs=28.8
Q ss_pred EEEEEEECCCCCCcCCeEEEEeCCEEEEEEeCcC
Q 031266 115 MFSRRFRLPENVKMDQIKASMENGVLTVTVPKVE 148 (162)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 148 (162)
.|.-.+.|| .++++.|+-+.++|.|+|.--+..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 477789999 889999999999999999987654
No 66
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=66.29 E-value=20 Score=25.87 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=26.6
Q ss_pred CeEEEEEEcC-CCCCcceEEEEeCCceEEEEEEEcce
Q 031266 63 EAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRGIE 98 (162)
Q Consensus 63 ~~~~i~v~lP-G~~~edI~v~v~~~~~L~I~g~~~~~ 98 (162)
..|.-.+.|| +++.+.+.-++.+| .|+|+-.+...
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~nG-vL~I~lpk~~~ 135 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKNG-LLTVTLPKAEP 135 (146)
T ss_pred eeEEEEEECcccccccceeeEeeCc-EEEEEEecccc
Confidence 4566677788 66777888999987 99998877554
No 67
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=65.80 E-value=22 Score=22.20 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=28.0
Q ss_pred CeEEEEEEcC-CCCCcceEEEEeCCceEEEEEEEc
Q 031266 63 EAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRG 96 (162)
Q Consensus 63 ~~~~i~v~lP-G~~~edI~v~v~~~~~L~I~g~~~ 96 (162)
+.|.+.++|| .+++++.+..+.++ .|.|+-.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~-~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNG-VLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCC-EEEEEEEeC
Confidence 6789999999 56999999999986 899997764
No 68
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=62.95 E-value=27 Score=25.41 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=26.3
Q ss_pred EEEEEECCCCCCcCCeEEEEeCCEEEEEEeCcC
Q 031266 116 FSRRFRLPENVKMDQIKASMENGVLTVTVPKVE 148 (162)
Q Consensus 116 f~r~~~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 148 (162)
|.-.+.|| +++.++|+-.+++|.|+|+--+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 55566788 889999999999999999987654
No 69
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=62.56 E-value=16 Score=22.00 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=19.5
Q ss_pred CCCCCcceEEEEeCCceEEEEEEEcc
Q 031266 72 PGLRKEEVKVEVEDDRVLQISGQRGI 97 (162)
Q Consensus 72 PG~~~edI~v~v~~~~~L~I~g~~~~ 97 (162)
++++..+|.|.+.+| .++|+|.-..
T Consensus 12 ~~~~~~~i~v~v~~g-~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSVENG-VVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEEECT-EEEEEEEESS
T ss_pred cccCCCeEEEEEECC-EEEEEeeCcH
Confidence 366777899999986 9999999754
No 70
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=62.10 E-value=8.1 Score=23.92 Aligned_cols=15 Identities=47% Similarity=0.512 Sum_probs=11.5
Q ss_pred CCeEEEEeCCEEEEE
Q 031266 129 DQIKASMENGVLTVT 143 (162)
Q Consensus 129 ~~i~A~~~~GvL~I~ 143 (162)
..|+|.|+||+|+-.
T Consensus 3 ~~I~aiYe~GvlkPl 17 (60)
T PF01954_consen 3 KVIEAIYENGVLKPL 17 (60)
T ss_dssp --EEEEEETTEEEEC
T ss_pred ceEEEEEECCEEEEC
Confidence 458999999999754
No 71
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=59.79 E-value=26 Score=22.96 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=29.0
Q ss_pred EEEEEEECCCCCCcCCeEEEEeCCEEEEEEeCcC
Q 031266 115 MFSRRFRLPENVKMDQIKASMENGVLTVTVPKVE 148 (162)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 148 (162)
.|.-.+.|| +++++.|+-.+.++.|+|+.-+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 477889998 899999999999999999997654
No 72
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=54.49 E-value=19 Score=27.10 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=26.5
Q ss_pred EEEcC-CCCCcceEEEEeCCceEEEEEEEccee
Q 031266 68 KADLP-GLRKEEVKVEVEDDRVLQISGQRGIER 99 (162)
Q Consensus 68 ~v~lP-G~~~edI~v~v~~~~~L~I~g~~~~~~ 99 (162)
+..|| |++++.|.-.+..+..|+|+|.+....
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~ 152 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPK 152 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCCCc
Confidence 35688 999999999998666999999876643
No 73
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=51.37 E-value=84 Score=23.79 Aligned_cols=45 Identities=29% Similarity=0.489 Sum_probs=30.3
Q ss_pred CcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEeCCEEEEEEe
Q 031266 76 KEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVP 145 (162)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lp 145 (162)
|++|+|++++ +.++|+|.+ |...+.| +.. .++...++|.|.|...
T Consensus 13 P~~V~v~i~~-~~v~VkGp~------------------G~L~~~~--~~~----~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEG-LVVTVKGPK------------------GELTRDF--WYP----GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEEC-CEEEEECCC------------------eEEEEEe--cCC----cEEEEEECCEEEEEEC
Confidence 5788999997 599999774 3344433 321 4556678888887754
No 74
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=50.64 E-value=96 Score=23.21 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=30.7
Q ss_pred CcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEeCCEEEEEEeC
Q 031266 76 KEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPK 146 (162)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lpK 146 (162)
|++|+|++++ +.++|+|.+ |...+.+. |. .+....+++.|.|....
T Consensus 7 P~~V~v~i~~-~~i~vkGp~------------------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~~ 52 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPK------------------GEVTRELW-YP-----GIEISVEDGKVVIETDF 52 (170)
T ss_pred CCCCEEEEeC-CEEEEECCC------------------eEEEEEEe-CC-----cEEEEEeCCEEEEEeCC
Confidence 5788999997 599999774 33444442 32 45556788888887543
No 75
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=49.78 E-value=77 Score=24.33 Aligned_cols=77 Identities=16% Similarity=0.269 Sum_probs=54.5
Q ss_pred eEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEE-ECCCCCCcCCeEEE
Q 031266 56 VDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRF-RLPENVKMDQIKAS 134 (162)
Q Consensus 56 ~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~-~LP~~vd~~~i~A~ 134 (162)
+-|-..++-.-+.+.|-|+..++|++.+.. +.|-+....-+ +.. |.-.+ .|-..|++++..-.
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp-~Sldl~v~dlq-----GK~----------y~~~vnnLlk~I~vEks~~k 140 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTP-MSLDLKVHDLQ-----GKN----------YRMIVNNLLKPISVEKSSKK 140 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecc-cceeeeeeecC-----Ccc----------eeeehhhhccccChhhcccc
Confidence 556677788889999999999999999997 57777754321 111 22111 24466888888888
Q ss_pred EeCCEEEEEEeCcC
Q 031266 135 MENGVLTVTVPKVE 148 (162)
Q Consensus 135 ~~~GvL~I~lpK~~ 148 (162)
.+-....|.+.|.+
T Consensus 141 vKtd~v~I~~kkVe 154 (224)
T KOG3260|consen 141 VKTDTVLILCKKVE 154 (224)
T ss_pred cccceEEEeehhhh
Confidence 88787788886654
No 76
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=48.84 E-value=42 Score=21.25 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=25.8
Q ss_pred EEEEEECCCCCCcCCeEEEEeCCEEEEEEe
Q 031266 116 FSRRFRLPENVKMDQIKASMENGVLTVTVP 145 (162)
Q Consensus 116 f~r~~~LP~~vd~~~i~A~~~~GvL~I~lp 145 (162)
..-.|.+|..++.++++..+.+.-|.|.+.
T Consensus 10 V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 556778999999999999999898999886
No 77
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=47.72 E-value=99 Score=23.15 Aligned_cols=44 Identities=30% Similarity=0.575 Sum_probs=29.8
Q ss_pred CcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEeCCEEEEEEe
Q 031266 76 KEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVP 145 (162)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lp 145 (162)
|++|+|++++ +.|+|+|.. |...+.+ |. .+....+++.|.|...
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~------------------G~l~~~l--~~-----~i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPK------------------GELSRTL--HP-----GVTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCC------------------eEEEEEc--CC-----CeEEEEECCEEEEEec
Confidence 5788999987 599999764 3344444 43 3455668887777754
No 78
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=46.32 E-value=89 Score=24.61 Aligned_cols=44 Identities=25% Similarity=0.238 Sum_probs=26.5
Q ss_pred EEEeCCceEEEEEEEcceec-CCCCcEE------EEeeeeeEEEEEEECCCC
Q 031266 81 VEVEDDRVLQISGQRGIERE-DKNDTWH------RWERSSGMFSRRFRLPEN 125 (162)
Q Consensus 81 v~v~~~~~L~I~g~~~~~~~-~~~~~~~------~~e~~~g~f~r~~~LP~~ 125 (162)
|.+++| .|+|++.+..... .....+. .....+|.|+-+++||..
T Consensus 60 v~v~~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 455676 8999988764311 0111222 123478999999999953
No 79
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=45.79 E-value=10 Score=27.87 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=18.5
Q ss_pred CCCCCcCCeEEEEeCCEEEEEEeC
Q 031266 123 PENVKMDQIKASMENGVLTVTVPK 146 (162)
Q Consensus 123 P~~vd~~~i~A~~~~GvL~I~lpK 146 (162)
-+.++.+.--+.|.||||+|.++-
T Consensus 66 ~e~~~~~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 66 AEEVPGEGFDVDYADGVLTLKLGS 89 (156)
T ss_pred HhhcCccccccccccceEEEEecC
Confidence 344555667788999999999983
No 80
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=44.39 E-value=84 Score=23.64 Aligned_cols=44 Identities=20% Similarity=0.569 Sum_probs=29.1
Q ss_pred CcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEeCCEEEEEEe
Q 031266 76 KEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVP 145 (162)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lp 145 (162)
|++|+|++++ +.|+|+|.. |.. +..||. .+....+++.|.|..+
T Consensus 12 P~~V~v~i~~-~~v~vkGp~------------------G~l--~~~~~~-----~v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPK------------------GTL--SRKIPD-----LITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCC------------------EEE--EEECCC-----CeEEEEeCCEEEEEcC
Confidence 4788899987 699999764 223 344554 3455668887777654
No 81
>PRK10568 periplasmic protein; Provisional
Probab=44.00 E-value=43 Score=25.67 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=21.0
Q ss_pred cCCCCCcceEEEEeCCceEEEEEEEc
Q 031266 71 LPGLRKEEVKVEVEDDRVLQISGQRG 96 (162)
Q Consensus 71 lPG~~~edI~v~v~~~~~L~I~g~~~ 96 (162)
-++++..+|+|.+.+| .++++|.-.
T Consensus 72 ~~~i~~~~I~V~v~~G-~V~L~G~V~ 96 (203)
T PRK10568 72 HDNIKSTDISVKTHQK-VVTLSGFVE 96 (203)
T ss_pred CCCCCCCceEEEEECC-EEEEEEEeC
Confidence 3567778899999987 999999976
No 82
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=43.88 E-value=1.1e+02 Score=22.96 Aligned_cols=44 Identities=27% Similarity=0.536 Sum_probs=29.6
Q ss_pred CcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEeCCEEEEEEe
Q 031266 76 KEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVP 145 (162)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lp 145 (162)
|++|+|++++ +.|+|+|.. |...+.| |.. +....+++.|.|...
T Consensus 12 P~~V~v~~~~-~~v~vkGp~------------------G~l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPK------------------GELSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCC------------------EEEEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 5789999997 599999764 3344544 433 445567887777654
No 83
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=43.44 E-value=26 Score=24.06 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.4
Q ss_pred CCeEEEEeCCEEEEEEeC
Q 031266 129 DQIKASMENGVLTVTVPK 146 (162)
Q Consensus 129 ~~i~A~~~~GvL~I~lpK 146 (162)
..+.+.+.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 467888899999999984
No 84
>PRK14290 chaperone protein DnaJ; Provisional
Probab=43.35 E-value=1.6e+02 Score=24.57 Aligned_cols=30 Identities=10% Similarity=0.262 Sum_probs=19.8
Q ss_pred EEECCCCCCcCCeEEEEeCCEEEEEEeCcC
Q 031266 119 RFRLPENVKMDQIKASMENGVLTVTVPKVE 148 (162)
Q Consensus 119 ~~~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 148 (162)
.|.|.+.+--..+.-..-+|.++|.+|...
T Consensus 277 ~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~ 306 (365)
T PRK14290 277 KINFPQAALGGEIEIKLFREKYNLKIPEGT 306 (365)
T ss_pred EeCHHHHhCCCEEEEEcCCceEEEEECCcc
Confidence 444445555555666667788999998654
No 85
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=41.55 E-value=87 Score=23.82 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=26.4
Q ss_pred CcceEEEEeCCceEEEEEEEccee--cCCCCcEEE-EeeeeeEEEEEEECCCC
Q 031266 76 KEEVKVEVEDDRVLQISGQRGIER--EDKNDTWHR-WERSSGMFSRRFRLPEN 125 (162)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~--~~~~~~~~~-~e~~~g~f~r~~~LP~~ 125 (162)
++++.|+ +| .|+|++.+.... .-..+.+.. ....+|.|+-++++|..
T Consensus 31 ~~nv~v~--~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 31 ADNVEFS--DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred cccEEEE--CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC
Confidence 4555544 65 788887754321 001122222 22468999999999853
No 86
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=40.97 E-value=1.4e+02 Score=22.70 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=30.1
Q ss_pred ECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceec
Q 031266 60 ETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIERE 100 (162)
Q Consensus 60 e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~ 100 (162)
..++.|+=++.||--..+..++++++| +|.|.-++..+..
T Consensus 133 ~~~~~~~krv~L~~~~~e~~~~t~nNg-ILEIri~~~~~~~ 172 (177)
T PF05455_consen 133 RVGEKYLKRVALPWPDPEITSATFNNG-ILEIRIRRTEESS 172 (177)
T ss_pred ecCCceEeeEecCCCccceeeEEEeCc-eEEEEEeecCCCC
Confidence 344556667888866677889999996 9999988866543
No 87
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=40.95 E-value=39 Score=23.28 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.1
Q ss_pred CCeEEEEeCCEEEEEEeCc
Q 031266 129 DQIKASMENGVLTVTVPKV 147 (162)
Q Consensus 129 ~~i~A~~~~GvL~I~lpK~ 147 (162)
..+.+.+.+|||+|+++..
T Consensus 30 ~d~d~e~~~gVLti~~~~~ 48 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPDG 48 (109)
T ss_dssp STEEEEEETTEEEEEETTS
T ss_pred CceEEEccCCEEEEEECCC
Confidence 4688999999999999754
No 88
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=40.94 E-value=30 Score=23.84 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.2
Q ss_pred eEEEEeCCEEEEEEeCcC
Q 031266 131 IKASMENGVLTVTVPKVE 148 (162)
Q Consensus 131 i~A~~~~GvL~I~lpK~~ 148 (162)
+.+.+.+|||+|+++...
T Consensus 29 ~D~e~~~gVLti~f~~~~ 46 (105)
T PRK00446 29 IDCERNGGVLTLTFENGS 46 (105)
T ss_pred eeeeccCCEEEEEECCCC
Confidence 778899999999998643
No 89
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=40.32 E-value=1.4e+02 Score=22.78 Aligned_cols=48 Identities=27% Similarity=0.344 Sum_probs=31.5
Q ss_pred CcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEeCCEEEEEEeC
Q 031266 76 KEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPK 146 (162)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lpK 146 (162)
|++|+|++++ +.++|+|.+ |...+.| +..- ..+....++|.|.|..+.
T Consensus 13 P~~V~V~i~~-~~v~VkGp~------------------G~L~~~~--~~~~--~~i~i~~~~~~i~v~~~~ 60 (190)
T PTZ00027 13 PEGVTVTVKS-RKVTVTGKY------------------GELTRSF--RHLP--VDIKLSKDGKYIKVEMWF 60 (190)
T ss_pred CCCCEEEEEC-CEEEEECCC------------------ceEEEEe--cCCC--ceEEEEeCCCEEEEEeCC
Confidence 6889999997 599999764 3344433 3211 246666788887777543
No 90
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=40.01 E-value=64 Score=21.53 Aligned_cols=30 Identities=10% Similarity=0.251 Sum_probs=26.6
Q ss_pred EEEEEEECCCCCCcCCeEEEEeCCEEEEEE
Q 031266 115 MFSRRFRLPENVKMDQIKASMENGVLTVTV 144 (162)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~l 144 (162)
...-+|+||.++..+.+...+...-|+|.+
T Consensus 16 eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 16 EVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 455678899999999999999999999998
No 91
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=39.63 E-value=28 Score=23.85 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=15.0
Q ss_pred CeEEEEeCCEEEEEEeCc
Q 031266 130 QIKASMENGVLTVTVPKV 147 (162)
Q Consensus 130 ~i~A~~~~GvL~I~lpK~ 147 (162)
.+.+.+.+|||+|+++..
T Consensus 26 d~D~e~~~gVLti~f~~~ 43 (102)
T TIGR03421 26 DIDCERAGGVLTLTFENG 43 (102)
T ss_pred CeeeecCCCEEEEEECCC
Confidence 477888999999999853
No 92
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=36.69 E-value=61 Score=22.33 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=17.5
Q ss_pred CCCCCcceEEEEeCCceEEEEEE
Q 031266 72 PGLRKEEVKVEVEDDRVLQISGQ 94 (162)
Q Consensus 72 PG~~~edI~v~v~~~~~L~I~g~ 94 (162)
-|++++++++.+-+| .+.++--
T Consensus 18 ~~l~~~ql~vsl~~G-~v~L~nl 39 (118)
T PF12624_consen 18 ENLDKDQLSVSLWNG-EVELRNL 39 (118)
T ss_pred hcCCHHHeeeeeccC-ceEEEcc
Confidence 478899999999887 7777743
No 93
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=34.80 E-value=2.1e+02 Score=21.90 Aligned_cols=49 Identities=22% Similarity=0.334 Sum_probs=28.5
Q ss_pred CCCcceEEEEeCCceEEEEEEEcceecCCCC-----cEEE---EeeeeeEEEEEEECCCC
Q 031266 74 LRKEEVKVEVEDDRVLQISGQRGIEREDKND-----TWHR---WERSSGMFSRRFRLPEN 125 (162)
Q Consensus 74 ~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~-----~~~~---~e~~~g~f~r~~~LP~~ 125 (162)
..++++.| ++| .|+|++.+......... .+.. ....+|.|+-++++|..
T Consensus 35 ~~~~nv~v--~~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 35 YRPENAYV--EDG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred CCCCCeEE--ECC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 45566554 466 89999886543211111 1111 23467889999999864
No 94
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=34.70 E-value=57 Score=23.63 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=21.4
Q ss_pred CCCCCcceEEEEeCCceEEEEEEEcc
Q 031266 72 PGLRKEEVKVEVEDDRVLQISGQRGI 97 (162)
Q Consensus 72 PG~~~edI~v~v~~~~~L~I~g~~~~ 97 (162)
.|+...+|+|.+++| .++++|.-..
T Consensus 38 ~~~~~~~i~V~v~~G-~v~l~G~v~s 62 (147)
T PRK11198 38 QGLGDADVNVQVEDG-KATVSGDAAS 62 (147)
T ss_pred cCCCcCCceEEEeCC-EEEEEEEeCC
Confidence 578888899999987 9999999754
No 95
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=32.30 E-value=35 Score=23.15 Aligned_cols=16 Identities=38% Similarity=0.684 Sum_probs=13.3
Q ss_pred EEEEeCCEEEEEEeCc
Q 031266 132 KASMENGVLTVTVPKV 147 (162)
Q Consensus 132 ~A~~~~GvL~I~lpK~ 147 (162)
.+.+.+|||+|+++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 6778999999999654
No 96
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.98 E-value=1.3e+02 Score=20.28 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=27.0
Q ss_pred eEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEE
Q 031266 56 VDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQ 94 (162)
Q Consensus 56 ~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~ 94 (162)
++|.+.+| .|....||++ .|+|+.+++ .|.|.+.
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~E~k-kL~v~t~ 59 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKPENK-KLLVNTT 59 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEecccc-eEEEecc
Confidence 68888888 6778899985 577888874 8998873
No 97
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=30.47 E-value=2.6e+02 Score=22.49 Aligned_cols=44 Identities=14% Similarity=0.324 Sum_probs=25.1
Q ss_pred EEEEeCCceEEEEEEEcceec---------CCCCcEEE------EeeeeeEEEEEEECCC
Q 031266 80 KVEVEDDRVLQISGQRGIERE---------DKNDTWHR------WERSSGMFSRRFRLPE 124 (162)
Q Consensus 80 ~v~v~~~~~L~I~g~~~~~~~---------~~~~~~~~------~e~~~g~f~r~~~LP~ 124 (162)
.+.+.+| .|+|++.+..... .....|.+ ....||.|+-+++||.
T Consensus 45 Nv~v~dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p 103 (269)
T cd02177 45 NVVISNG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGAD 103 (269)
T ss_pred ceEEeCC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCC
Confidence 3456677 8999988753211 11111221 1237889999999753
No 98
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=29.64 E-value=1.3e+02 Score=19.56 Aligned_cols=43 Identities=12% Similarity=0.396 Sum_probs=26.4
Q ss_pred CCCcEEEEeeeeeEEEEEEECCCCCCcCC-eEEEEeCCEE-EEEE
Q 031266 102 KNDTWHRWERSSGMFSRRFRLPENVKMDQ-IKASMENGVL-TVTV 144 (162)
Q Consensus 102 ~~~~~~~~e~~~g~f~r~~~LP~~vd~~~-i~A~~~~GvL-~I~l 144 (162)
..+.|....-.+--|.|.|.+|+...+.. +.-.|.+|-+ .|.-
T Consensus 29 ~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~~ 73 (85)
T PF14814_consen 29 RPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQD 73 (85)
T ss_dssp STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEEEEEE
T ss_pred CCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEEEEEE
Confidence 33455555555666889999999876654 8888887744 4543
No 99
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=29.42 E-value=2.1e+02 Score=21.81 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=30.0
Q ss_pred CcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEEEeCCEEEEEEe
Q 031266 76 KEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVP 145 (162)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lp 145 (162)
|++|+|++++ +.|+|+|.+- ... ..||.. + -.+....+++.|.|.-+
T Consensus 12 P~~V~V~i~~-~~ItVkGpkG------------------~Ls--~~~~~~-~-~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKRG------------------TLT--KDLRHL-Q-LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeC-CEEEEECCCc------------------EEE--EEcCCC-C-cEEEEEecCCEEEEEeC
Confidence 5789999997 6999997752 233 344431 0 13455667788887744
No 100
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.36 E-value=32 Score=29.66 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=52.3
Q ss_pred cceeEEEECCCeEEEEEEcCCCCCcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCC-CcCCe
Q 031266 53 NARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENV-KMDQI 131 (162)
Q Consensus 53 ~p~~di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~v-d~~~i 131 (162)
+|.+.+..+++...|.+..|-.+...+.+..-+ +....+ .|.|.-+..+|..+ +-..-
T Consensus 3 tp~f~itqdee~~~L~I~~p~~~a~~le~~a~~-nm~~f~--------------------~~pyflrl~~p~~~~~d~~~ 61 (466)
T KOG3247|consen 3 TPQFAITQDEEFCTLIIPRPLNQASKLEIDAAA-NMASFS--------------------AGPYFLRLAGPGMVEDDARP 61 (466)
T ss_pred CceeeeeecCceEEEEeeccccchhccchhhHh-hhhhhc--------------------cchhHHhhcCcchhhhhccc
Confidence 578889999999999999997777777766655 344444 23345566677663 33334
Q ss_pred EEEE--eCCEEEEEEeCcC
Q 031266 132 KASM--ENGVLTVTVPKVE 148 (162)
Q Consensus 132 ~A~~--~~GvL~I~lpK~~ 148 (162)
.|+| ++|-..|.+||..
T Consensus 62 n~s~d~kd~~~~vK~~K~~ 80 (466)
T KOG3247|consen 62 NASYDAKDGYAHVKVPKFH 80 (466)
T ss_pred cCccccccceeEEeecCCC
Confidence 4555 6899999999976
No 101
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=27.65 E-value=56 Score=20.25 Aligned_cols=22 Identities=23% Similarity=0.441 Sum_probs=17.7
Q ss_pred CCCcceEEEEeCCceEEEEEEEc
Q 031266 74 LRKEEVKVEVEDDRVLQISGQRG 96 (162)
Q Consensus 74 ~~~edI~v~v~~~~~L~I~g~~~ 96 (162)
++.+.|.|....| .|.|+|+.-
T Consensus 23 f~~~~I~l~t~~g-~l~I~G~~L 44 (66)
T PF07873_consen 23 FDDEEIRLNTKKG-KLTIKGEGL 44 (66)
T ss_dssp EETTEEEEEETTE-EEEEEEEEE
T ss_pred ECCCEEEEEeCCE-EEEEECceE
Confidence 4678888988885 999999863
No 102
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=27.55 E-value=63 Score=20.10 Aligned_cols=15 Identities=33% Similarity=0.851 Sum_probs=10.5
Q ss_pred EEEECCCCCCcCCeE
Q 031266 118 RRFRLPENVKMDQIK 132 (162)
Q Consensus 118 r~~~LP~~vd~~~i~ 132 (162)
++++||.+.+.+.++
T Consensus 25 ksy~lp~ef~~~~L~ 39 (61)
T PF07076_consen 25 KSYKLPEEFDFDGLK 39 (61)
T ss_pred CEEECCCcccccccC
Confidence 467788887776544
No 103
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=27.45 E-value=69 Score=20.48 Aligned_cols=33 Identities=12% Similarity=0.364 Sum_probs=24.0
Q ss_pred EEEECCCeEEEEEEcCCCCCcceEEEEeCCceE
Q 031266 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVL 89 (162)
Q Consensus 57 di~e~~~~~~i~v~lPG~~~edI~v~v~~~~~L 89 (162)
.|....+.|.|++.+=|+....|.+.-.+|..+
T Consensus 14 tWtD~tG~f~VeA~fv~~~dgkV~L~k~nG~~i 46 (70)
T PF03983_consen 14 TWTDRTGKFKVEAEFVGVNDGKVHLHKTNGVKI 46 (70)
T ss_dssp EEEBSSS--EEEEEEEEEETTEEEEE-TTS-EE
T ss_pred EEEeCCCCEEEEEEEEEeeCCEEEEEecCCeEE
Confidence 456677899999999999999999998877333
No 104
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=27.32 E-value=1.1e+02 Score=18.57 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=18.0
Q ss_pred EEcCCCCC-cceEEEEeCCceEEEE
Q 031266 69 ADLPGLRK-EEVKVEVEDDRVLQIS 92 (162)
Q Consensus 69 v~lPG~~~-edI~v~v~~~~~L~I~ 92 (162)
++-.||.. +.|+|.+.+| .|+|+
T Consensus 33 L~~aGF~~G~~v~V~v~~g-~lvIt 56 (57)
T PF08845_consen 33 LEEAGFTIGDPVKVRVMPG-CLVIT 56 (57)
T ss_pred hHHhCCCCCCEEEEEEECC-EEEEe
Confidence 45678865 5699999986 88886
No 105
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=27.31 E-value=75 Score=19.71 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=20.4
Q ss_pred CeEEEEEEcCCCCCcce-EEEEeCCceEEE
Q 031266 63 EAHVFKADLPGLRKEEV-KVEVEDDRVLQI 91 (162)
Q Consensus 63 ~~~~i~v~lPG~~~edI-~v~v~~~~~L~I 91 (162)
+.|.|.+..+|+..... .|.+..+....|
T Consensus 48 g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~ 77 (82)
T PF13620_consen 48 GTYTLRVSAPGYQPQTQENVTVTAGQTTTV 77 (82)
T ss_dssp EEEEEEEEBTTEE-EEEEEEEESSSSEEE-
T ss_pred EeEEEEEEECCcceEEEEEEEEeCCCEEEE
Confidence 67999999999988877 577775544443
No 106
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=27.26 E-value=1.8e+02 Score=18.94 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=12.5
Q ss_pred eEEEEeCCEEEEEEeC
Q 031266 131 IKASMENGVLTVTVPK 146 (162)
Q Consensus 131 i~A~~~~GvL~I~lpK 146 (162)
+.+..+||-.++++-.
T Consensus 70 l~i~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 70 LIIDCKDGKYRLTITN 85 (91)
T ss_pred EEEEEECCEEEEEEEE
Confidence 6777889988888754
No 107
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=27.17 E-value=1.7e+02 Score=21.70 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=21.1
Q ss_pred eEEEEEEEcce-ecCCCCcEE--EEeeeeeEEEEEEECCCC
Q 031266 88 VLQISGQRGIE-REDKNDTWH--RWERSSGMFSRRFRLPEN 125 (162)
Q Consensus 88 ~L~I~g~~~~~-~~~~~~~~~--~~e~~~g~f~r~~~LP~~ 125 (162)
.|.|++.+... ..-..+.+. .....+|.|+-++++|..
T Consensus 39 ~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~ 79 (210)
T cd00413 39 GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG 79 (210)
T ss_pred eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC
Confidence 67777765432 000111111 223467899999999875
No 108
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=26.76 E-value=1.7e+02 Score=21.47 Aligned_cols=29 Identities=38% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEECCCCCCcCCeEEEEeCCEEEEEEeCc
Q 031266 119 RFRLPENVKMDQIKASMENGVLTVTVPKV 147 (162)
Q Consensus 119 ~~~LP~~vd~~~i~A~~~~GvL~I~lpK~ 147 (162)
++.=|+.|-+........+|-+++++|+.
T Consensus 148 t~~~p~~V~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 148 TFENPENVVPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp CSSSTTSSEEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCCCEEEEEEeeEEecCCEEEEEeCCC
Confidence 33457777777666666799999999873
No 109
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=26.52 E-value=89 Score=25.55 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=26.9
Q ss_pred CcceEEEEeCCceEEEEEEEcceecC--CCCcEE---EEeeeeeEEEEEEECCC
Q 031266 76 KEEVKVEVEDDRVLQISGQRGIERED--KNDTWH---RWERSSGMFSRRFRLPE 124 (162)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~~~--~~~~~~---~~e~~~g~f~r~~~LP~ 124 (162)
++++ .+.+| .|+|++.+...... ..+.+. .....+|.|+-+++||.
T Consensus 40 ~~nv--~v~~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~ 90 (295)
T cd02180 40 PDAV--TTING-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPG 90 (295)
T ss_pred CcCe--EecCC-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCC
Confidence 4555 44576 89999886532110 011111 12346889999999996
No 110
>PF13014 KH_3: KH domain
Probab=26.49 E-value=82 Score=17.35 Aligned_cols=21 Identities=19% Similarity=0.526 Sum_probs=12.8
Q ss_pred EEEEeCcCccccCCceEEeccC
Q 031266 141 TVTVPKVEEARKANAKAIEISG 162 (162)
Q Consensus 141 ~I~lpK~~~~~~~~~~~I~I~~ 162 (162)
.|.+|+.. ......+.|.|.|
T Consensus 23 ~I~i~~~~-~~~~~~~~v~I~G 43 (43)
T PF13014_consen 23 KIQIPPEN-EPGSNERVVTITG 43 (43)
T ss_pred EEEECCcc-CCCCCceEEEEEC
Confidence 56677733 3445567777765
No 111
>PRK14299 chaperone protein DnaJ; Provisional
Probab=26.14 E-value=3.3e+02 Score=21.94 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=17.5
Q ss_pred EEECC--CCCCcCCeEEEEeCCEEEEEEeCcC
Q 031266 119 RFRLP--ENVKMDQIKASMENGVLTVTVPKVE 148 (162)
Q Consensus 119 ~~~LP--~~vd~~~i~A~~~~GvL~I~lpK~~ 148 (162)
.+.|+ +.+--..+....-+|.++|.+|...
T Consensus 206 ~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~ 237 (291)
T PRK14299 206 TVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRT 237 (291)
T ss_pred EEecCHHHHhCCCEEEEECCCCCEEEEeCCCc
Confidence 44444 3344344555556788888888644
No 112
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=25.67 E-value=1.6e+02 Score=18.18 Aligned_cols=44 Identities=27% Similarity=0.528 Sum_probs=29.3
Q ss_pred CcceEEEEeCCceEEEEEEEcceecCCCCcEEEEeeeeeEEEEEEECCCCCCcCCeEEE--EeCCEEEEEEe
Q 031266 76 KEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKAS--MENGVLTVTVP 145 (162)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~--~~~GvL~I~lp 145 (162)
++.++|++++ +.+++.|... ..++.+|.. ++.. .+++.+++...
T Consensus 2 P~gV~v~~~~-~~i~v~G~~g--------------------~l~~~~~~~-----v~v~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPKG--------------------ELSRPIPPG-----VKVEIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEET-TEEEEESSSS--------------------EEEEEETTT-----EEEEEEEETTSEEEEEE
T ss_pred CCcEEEEEeC-cEEEEECCCE--------------------eEEEECCCC-----eeEEEEcCCCceEEEEC
Confidence 4678999997 6888887642 146667754 3444 55777766654
No 113
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=25.08 E-value=1.4e+02 Score=23.56 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=11.5
Q ss_pred cceEEEEe-CCceEEEEEEEc
Q 031266 77 EEVKVEVE-DDRVLQISGQRG 96 (162)
Q Consensus 77 edI~v~v~-~~~~L~I~g~~~ 96 (162)
+++. ++ +| .|+|++.+.
T Consensus 46 ~n~~--v~~dG-~L~I~a~~~ 63 (259)
T cd02182 46 ANVQ--LSGNG-TLQITPLRD 63 (259)
T ss_pred cCEE--EcCCC-eEEEEEEec
Confidence 4444 44 66 899998875
No 114
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=24.91 E-value=2.9e+02 Score=20.94 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=16.9
Q ss_pred CCCcceEEEEeCCceEEEEEEE
Q 031266 74 LRKEEVKVEVEDDRVLQISGQR 95 (162)
Q Consensus 74 ~~~edI~v~v~~~~~L~I~g~~ 95 (162)
+.|++++|++++ +.++++|.+
T Consensus 10 ~~P~gV~V~i~~-~~v~vkGpk 30 (178)
T COG0097 10 VIPAGVTVSIEG-QVVTVKGPK 30 (178)
T ss_pred ecCCCeEEEEec-cEEEEECCC
Confidence 347899999996 599998765
No 115
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=24.02 E-value=1.1e+02 Score=17.34 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=13.0
Q ss_pred eEEEE-CCCeEEEEE-EcCCC
Q 031266 56 VDWKE-TPEAHVFKA-DLPGL 74 (162)
Q Consensus 56 ~di~e-~~~~~~i~v-~lPG~ 74 (162)
+-|.. .++.|.+.+ ++||+
T Consensus 4 ~~i~~~~~~~y~~~~pdlpg~ 24 (48)
T PF03681_consen 4 AIIEKDEDGGYVAYFPDLPGC 24 (48)
T ss_dssp EEEEE-TSSSEEEEETTCCTC
T ss_pred EEEEECCCCeEEEEeCCccCh
Confidence 34444 777888887 77876
No 116
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=23.50 E-value=74 Score=20.18 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=10.8
Q ss_pred eCCEEEEEEeCcC
Q 031266 136 ENGVLTVTVPKVE 148 (162)
Q Consensus 136 ~~GvL~I~lpK~~ 148 (162)
.+|.|.+.+||+.
T Consensus 9 ~~g~l~~YvpKKD 21 (67)
T TIGR02934 9 RAGELSAYVPKKD 21 (67)
T ss_pred CCCCEEEEEECCc
Confidence 4577999999987
No 117
>COG2880 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.19 E-value=7 Score=24.82 Aligned_cols=13 Identities=54% Similarity=0.601 Sum_probs=10.4
Q ss_pred CeEEEEeCCEEEE
Q 031266 130 QIKASMENGVLTV 142 (162)
Q Consensus 130 ~i~A~~~~GvL~I 142 (162)
-|.|.|+||||+-
T Consensus 6 IIEaiYEnGVfKP 18 (67)
T COG2880 6 IIEAIYENGVLKP 18 (67)
T ss_pred HHHHHHhcccccc
Confidence 3778999999873
No 118
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=22.50 E-value=1.1e+02 Score=17.15 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=11.6
Q ss_pred CCCCcceEEEEeCCceEEEE
Q 031266 73 GLRKEEVKVEVEDDRVLQIS 92 (162)
Q Consensus 73 G~~~edI~v~v~~~~~L~I~ 92 (162)
..+-+.+.|++.+|+.++|.
T Consensus 20 ~~~g~~vtV~~~~G~~~tv~ 39 (42)
T PF02736_consen 20 EEEGDKVTVKTEDGKEVTVK 39 (42)
T ss_dssp EEESSEEEEEETTTEEEEEE
T ss_pred EEcCCEEEEEECCCCEEEeC
Confidence 44555666666666555554
No 119
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=21.66 E-value=3.2e+02 Score=25.84 Aligned_cols=27 Identities=15% Similarity=-0.007 Sum_probs=16.0
Q ss_pred CCCCCCcCCeEEEEeCCEEEEEEeCcC
Q 031266 122 LPENVKMDQIKASMENGVLTVTVPKVE 148 (162)
Q Consensus 122 LP~~vd~~~i~A~~~~GvL~I~lpK~~ 148 (162)
|...+--..+...-=+|.|+|.+|...
T Consensus 756 L~EALLGgtIeIpTLDGrVkLkIPpgT 782 (871)
T TIGR03835 756 PLVAYNGGIIDVFGPNKLFNVRIPGGI 782 (871)
T ss_pred HHHHhcCCEEEeeCCCCCEEEeeCCCC
Confidence 333344445555555687888888654
No 120
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=21.60 E-value=2.6e+02 Score=20.78 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=17.0
Q ss_pred ECCCCCCcCCeE-EEEeCCEEEEEEeCc
Q 031266 121 RLPENVKMDQIK-ASMENGVLTVTVPKV 147 (162)
Q Consensus 121 ~LP~~vd~~~i~-A~~~~GvL~I~lpK~ 147 (162)
.=|+.|-+.... +...+|.|+++||+.
T Consensus 161 ~~p~~V~p~~~~~~~~~~~~~~~~lp~~ 188 (189)
T smart00813 161 EDPNKVVPVTSTLAAVEGGTLTVTLPPH 188 (189)
T ss_pred CCCCeeeccccCCceeeCCEEEEEeCCC
Confidence 344445444433 345778999999974
No 121
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=21.54 E-value=81 Score=21.86 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=14.7
Q ss_pred eEEEEeCCEEEEEEeCcC
Q 031266 131 IKASMENGVLTVTVPKVE 148 (162)
Q Consensus 131 i~A~~~~GvL~I~lpK~~ 148 (162)
|-+.+.+|||+|+++...
T Consensus 30 ~D~d~qg~VlTl~f~ngs 47 (106)
T COG1965 30 IDCEIQGGVLTLTFDNGS 47 (106)
T ss_pred cceecCCCEEEEEECCCc
Confidence 567788999999998763
No 122
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=21.31 E-value=77 Score=20.88 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=26.6
Q ss_pred cceeEEEECCCeEEEE--EEcCCCCCcceEEEEeCCceEEEEEEEc
Q 031266 53 NARVDWKETPEAHVFK--ADLPGLRKEEVKVEVEDDRVLQISGQRG 96 (162)
Q Consensus 53 ~p~~di~e~~~~~~i~--v~lPG~~~edI~v~v~~~~~L~I~g~~~ 96 (162)
.|.+.+.-. .+..|+ -.+=-++.+.|.|....| .|.|+|+.-
T Consensus 19 ~p~itl~gr-~~~~Ien~k~I~~y~~~~I~l~t~~G-~l~I~G~~L 62 (85)
T TIGR02856 19 LPRITLIGN-EHIYIENHRGLVVFSPEEVKLNSTNG-KITIEGKNF 62 (85)
T ss_pred CCEEEEECC-cEEEEECccceEEECCCEEEEEcCce-EEEEEcccE
Confidence 355655532 233332 133345788999999986 999999853
No 123
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=21.07 E-value=4.8e+02 Score=21.51 Aligned_cols=14 Identities=29% Similarity=0.045 Sum_probs=8.6
Q ss_pred EEeCCceEEEEEEEc
Q 031266 82 EVEDDRVLQISGQRG 96 (162)
Q Consensus 82 ~v~~~~~L~I~g~~~ 96 (162)
.+++| .|+|++.+.
T Consensus 42 ~v~dG-~L~I~p~~~ 55 (321)
T cd02179 42 FVKDG-NLVIEPTLL 55 (321)
T ss_pred EEeCC-eEEEEEeec
Confidence 34465 677777654
No 124
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=20.95 E-value=61 Score=23.20 Aligned_cols=27 Identities=22% Similarity=0.516 Sum_probs=19.5
Q ss_pred CCCCCCcCCeE---EEE--eCCEEEEEEeCcC
Q 031266 122 LPENVKMDQIK---ASM--ENGVLTVTVPKVE 148 (162)
Q Consensus 122 LP~~vd~~~i~---A~~--~~GvL~I~lpK~~ 148 (162)
+-.++|.++++ -.. +++.|+|++|..+
T Consensus 48 v~~GiDLs~i~~~~i~~d~~~~~i~I~LP~~~ 79 (157)
T PF14014_consen 48 VKAGIDLSKIKEEDIEVDEDGKTITITLPPPE 79 (157)
T ss_pred EEEEEEhHHCCcceEEEcCCCCEEEEECCCcE
Confidence 33456666666 555 8889999999876
No 125
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=20.85 E-value=1.9e+02 Score=18.93 Aligned_cols=27 Identities=7% Similarity=0.043 Sum_probs=15.0
Q ss_pred cccccceeEEEECCCeEEEEEEcCCCC
Q 031266 49 SAVVNARVDWKETPEAHVFKADLPGLR 75 (162)
Q Consensus 49 ~~~~~p~~di~e~~~~~~i~v~lPG~~ 75 (162)
.....|.+.+...++.|+.++.||.-.
T Consensus 17 ~~~~~P~~~~~~~~~~~~c~v~LP~~~ 43 (90)
T PF03368_consen 17 FTNLKPEFEIEKIGSGFICTVILPINS 43 (90)
T ss_dssp T--SS-EEEEEE--G-EEEEEE--TT-
T ss_pred CccCCceEEEEEcCCcEEEEEECCCCC
Confidence 344568899999999999999999543
No 126
>PRK14284 chaperone protein DnaJ; Provisional
Probab=20.85 E-value=5.2e+02 Score=21.83 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=18.1
Q ss_pred EEECCCCCCcCCeEEEE-e-CCEEEEEEeCcC
Q 031266 119 RFRLPENVKMDQIKASM-E-NGVLTVTVPKVE 148 (162)
Q Consensus 119 ~~~LP~~vd~~~i~A~~-~-~GvL~I~lpK~~ 148 (162)
.|.|.+.+--..++... . +|.|+|++|+..
T Consensus 285 ~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~ 316 (391)
T PRK14284 285 PIGFVDAALGMKKEIPTLLKEGTCRLTIPEGI 316 (391)
T ss_pred EecHHHHhCCCeEEEeecCCCcEEEEEECCcc
Confidence 34444445555555544 3 478999999654
No 127
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=20.59 E-value=83 Score=20.82 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=15.5
Q ss_pred CCCcceEEEEeCCceEEEEEEE
Q 031266 74 LRKEEVKVEVEDDRVLQISGQR 95 (162)
Q Consensus 74 ~~~edI~v~v~~~~~L~I~g~~ 95 (162)
++.+.|.+....| .|+|+|+.
T Consensus 22 fd~~~I~l~T~~G-~L~I~G~~ 42 (85)
T TIGR02892 22 FDDEEILLETVMG-FLTIKGQE 42 (85)
T ss_pred ECCCEEEEEeCcE-EEEEEcce
Confidence 3667777887775 88888874
No 128
>PF06988 NifT: NifT/FixU protein; InterPro: IPR009727 This family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in Klebsiella pneumoniae has only a limited effect on nitrogen fixation [].; GO: 0009399 nitrogen fixation; PDB: 2JN4_A.
Probab=20.28 E-value=87 Score=19.68 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=9.7
Q ss_pred eCCEEEEEEeCcC
Q 031266 136 ENGVLTVTVPKVE 148 (162)
Q Consensus 136 ~~GvL~I~lpK~~ 148 (162)
.+|.|.+.+||+.
T Consensus 9 ~~G~ls~YVpKKD 21 (64)
T PF06988_consen 9 GAGGLSAYVPKKD 21 (64)
T ss_dssp SS--EEEEETTTT
T ss_pred CCcCEEEEEeCCc
Confidence 4689999999998
No 129
>PRK01379 cyaY frataxin-like protein; Provisional
Probab=20.09 E-value=98 Score=21.26 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=12.0
Q ss_pred eEEEEeCCEEEEEEe
Q 031266 131 IKASMENGVLTVTVP 145 (162)
Q Consensus 131 i~A~~~~GvL~I~lp 145 (162)
+.+.+.+|||+|++.
T Consensus 30 ~D~e~~~gVLtl~~~ 44 (103)
T PRK01379 30 IDVDLQGDILNLDTD 44 (103)
T ss_pred eeeeccCCEEEEEeC
Confidence 677788999999864
Done!