RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031266
(162 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 203 bits (518), Expect = 2e-68
Identities = 97/162 (59%), Positives = 115/162 (70%), Gaps = 11/162 (6%)
Query: 1 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKE 60
MS++ RRS+VFDPF+ DPF F S S ET+A NAR+DWKE
Sbjct: 1 MSIV------RRSNVFDPFADLWADPFDTFRSIVPAISGGGS----ETAAFANARMDWKE 50
Query: 61 TPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRF 120
TPEAHVFKADLPG++KEEVKVEVED VL +SG+R E+EDKND WHR ERSSG F RRF
Sbjct: 51 TPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRF 110
Query: 121 RLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 162
RL E+ K++++KA +ENGVLTVTVPK E K KAI+ISG
Sbjct: 111 RLLEDAKVEEVKAGLENGVLTVTVPKAEVK-KPEVKAIQISG 151
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 161 bits (411), Expect = 9e-53
Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 55 RVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSG 114
RVD KE V ADLPG+ +++V+++ +L I G+R E + + + R ER G
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERRYG 64
Query: 115 MFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEA 150
F RRF LP++ D I A+ NGVL + +PK A
Sbjct: 65 SFHRRFALPDSADADGITAAGRNGVLEIRIPKRPAA 100
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 149 bits (378), Expect = 6e-47
Identities = 38/156 (24%), Positives = 57/156 (36%), Gaps = 5/156 (3%)
Query: 6 SFFGNRRSSVFDPFSLDVWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKETPEAH 65
S F F PLP + + + S + E +
Sbjct: 9 SLFERMFKEFFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHI 68
Query: 66 VFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWE-RSSGMFSRRFRLPE 124
A LPG+ KE++ + D L+I +R +++ E R +LP
Sbjct: 69 KVIAWLPGVNKEDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPA 127
Query: 125 NVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEI 160
VK + A ENGVL+V +PK E + K K I I
Sbjct: 128 TVKEENASAKFENGVLSVILPKAESSIK---KGINI 160
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 145 bits (369), Expect = 4e-46
Identities = 32/131 (24%), Positives = 47/131 (35%), Gaps = 12/131 (9%)
Query: 23 VWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLRKEEVKVE 82
++ ++ S + +V VD E V ADL G KE++K
Sbjct: 1 MYYLGKEL-------QKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKAR 53
Query: 83 VEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMD-QIKASMENGVLT 141
V L I +R I + + RLP NV D +I ENGVLT
Sbjct: 54 VSGQNELIIEAEREITEPGV----KYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLT 109
Query: 142 VTVPKVEEARK 152
+ +P +
Sbjct: 110 IRIPIAGTSVF 120
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 80.5 bits (199), Expect = 7e-21
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 59 KETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSR 118
T + D+ +E+ V+ +D ++I+G+ R+D++ R F+R
Sbjct: 3 SHTADRWRVSLDVNHFAPDELTVKTKDGV-VEITGKHA-ARQDEHGYISR------CFTR 54
Query: 119 RFRLPENVKMDQIKASM-ENGVLTVTVPK 146
++ LP V Q+ +S+ G LTV P
Sbjct: 55 KYTLPPGVDPTQVSSSLSPEGTLTVEAPM 83
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 79.4 bits (196), Expect = 2e-20
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 9/95 (9%)
Query: 59 KETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSR 118
P D+ EE+ V+V D +++ E++ D R F R
Sbjct: 7 PTDPGYFSVLLDVKHFSPEEISVKVVGDH-VEVHA----RHEERPDEHGFIARE---FHR 58
Query: 119 RFRLPENVKMDQIKASM-ENGVLTVTVPKVEEARK 152
R+RLP V + +++ GVL++
Sbjct: 59 RYRLPPGVDPAAVTSALSPEGVLSIQATPASAQAS 93
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 81.5 bits (201), Expect = 3e-20
Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 15/161 (9%)
Query: 5 PSFFGNRRSSVFDPF---SLDVWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKET 61
P F + S +FD F L D F S + S S + +
Sbjct: 13 PFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAP-SWFDTGLSEMRLE 71
Query: 62 PEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFR 121
+ D+ EE+KV+V D +++ G + E++ D R F R++R
Sbjct: 72 KDRFSVNLDVKHFSPEELKVKVLGDV-IEVHG----KHEERQDEHGFISRE---FHRKYR 123
Query: 122 LPENVKMDQIKASM-ENGVLTVTVPKVEEARKANAKAIEIS 161
+P +V I +S+ +GVLTV P+ + + I I+
Sbjct: 124 IPADVDPLTITSSLSSDGVLTVNGPRKQV--SGPERTIPIT 162
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 78.6 bits (194), Expect = 4e-20
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 59 KETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSR 118
+ D+ EE+KV+V V+++ G + E++ D R F R
Sbjct: 2 AMEKDRFSVNLDVKHFSPEELKVKVL-GDVIEVHG----KHEERQDEHGFISRE---FHR 53
Query: 119 RFRLPENVKMDQIKASM-ENGVLTVTVPKVEEARK 152
++R+P +V I +SM +GVLTV P+ + +
Sbjct: 54 KYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGP 88
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 78.0 bits (192), Expect = 1e-19
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 59 KETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSR 118
+ + V D+ E++ V+V++D V I G+ ++ D R F R
Sbjct: 8 RSDRDKFVIFLDVKHFSPEDLTVKVQEDFVE-IHGK----HNERQDDHGYISR---EFHR 59
Query: 119 RFRLPENVKMDQIKASM-ENGVLTVTVPKVEEARKANAKAIEI 160
R+RLP NV + S+ +G+LT + PK+ A I
Sbjct: 60 RYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAI 102
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 68.3 bits (166), Expect = 2e-14
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMF 116
+ + H+ P ++VKV + ++V + G G E + + + F
Sbjct: 228 AEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVY-VHGVTGKEEKTE----NASHSEHREF 282
Query: 117 SRRFRLPENVKMDQIKASMENGVLTVTVPKVE 148
+ F PE V + +A + +G++ V P +
Sbjct: 283 YKAFVTPEVVDASKTQAEIVDGLMVVEAPLFK 314
Score = 61.0 bits (147), Expect = 8e-12
Identities = 23/140 (16%), Positives = 52/140 (37%), Gaps = 12/140 (8%)
Query: 7 FFGNRRSSVFDPFSLDVWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKETPEAHV 66
F +++ + F + + P + L P E + +A K+
Sbjct: 58 FSLEPFTAMDNAFESVMKEMSAIQP--REFHPELEYTQPGELDFLKDAYEVGKDGRLHFK 115
Query: 67 FKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENV 126
++ + EE+ ++ + ++ L + Q+ + D S R LP +V
Sbjct: 116 VYFNVKNFKAEEITIKADKNK-LVVRAQKSVACGDA--------AMSESVGRSIPLPPSV 166
Query: 127 KMDQIKASM-ENGVLTVTVP 145
+ I+A++ + VL + P
Sbjct: 167 DRNHIQATITTDDVLVIEAP 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.012
Identities = 18/148 (12%), Positives = 34/148 (22%), Gaps = 45/148 (30%)
Query: 15 VFDPFSLDVWDP--FRDFPLP------SGYSSALSSQFPPETSAVVNARVDWKETPE--- 63
V +V + + F L + + T+ + TP+
Sbjct: 249 VLL----NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 64 ---AHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWER--------- 111
L +E + + R L I + D TW W+
Sbjct: 305 SLLLKYLDCRPQDLPREVLTT---NPRRLSIIAES---IRDGLATWDNWKHVNCDKLTTI 358
Query: 112 --------SSGMFSRRFR----LPENVK 127
+ + F P +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAH 386
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 31.8 bits (72), Expect = 0.076
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 24/75 (32%)
Query: 71 LPGLRKEEVKV-EVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVK-M 128
LPG K++VK+ + + ++ QR R LP +
Sbjct: 313 LPGFDKKQVKLTQYGPEVTVEAGDQR----------------------RNIFLPPALSGR 350
Query: 129 DQIKASMENGVLTVT 143
A +N L ++
Sbjct: 351 PITGAKFQNNYLIIS 365
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.25
Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 58/161 (36%)
Query: 22 DVWDPFRDFPLPSGYSSALS--------SQ--FPPET--SAVVNARVDWKE---TPEAHV 66
D W+ F A++ +P + +++ ++ E +P +
Sbjct: 287 DSWESFFV-----SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 67 FKADLPGLRKEEVKVEVE-------DDRVLQIS---GQR------------GIEREDKND 104
L +E+V+ V + ++IS G + G+ N
Sbjct: 342 -----SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL-----NL 391
Query: 105 TWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVP 145
T + + SG+ R + + K N L V P
Sbjct: 392 TLRKAKAPSGLDQSR------IPFSERKLKFSNRFLPVASP 426
Score = 28.5 bits (63), Expect = 1.1
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 18/67 (26%)
Query: 16 FDPFSLD--VWDPF--RDFPLPSGYSSALSSQFPPE-TSAVVNARVDWKETPEA---HVF 67
F+ + V+D F D LS ++ V W+ T + H+
Sbjct: 450 FNAKDIQIPVYDTFDGSDL-------RVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 68 KADL-PG 73
D PG
Sbjct: 503 --DFGPG 507
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 28.6 bits (65), Expect = 0.98
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 68 KADLPGLRKEEVKVEVED------DRVLQISGQRGI 97
K DLP + VK ++E+ + + S + GI
Sbjct: 134 KIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGI 169
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 28.6 bits (65), Expect = 0.98
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 68 KADLPGLRKEEVKVEVED------DRVLQISGQRGI 97
K DLP E V E+ED ++ S + G+
Sbjct: 132 KIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGV 167
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2
domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Length = 102
Score = 27.3 bits (60), Expect = 1.2
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 6/78 (7%)
Query: 74 LRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMD--QI 131
E E ++ I +G W ++ G+ F L ++
Sbjct: 25 SMDENFHPLNELIPLVYIQDPKGNR----IAQWQSFQLEGGLKQFSFPLSSEPFQGSYKV 80
Query: 132 KASMENGVLTVTVPKVEE 149
++G T VEE
Sbjct: 81 VVQKKSGGRTEHPFTVEE 98
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics
consortium, leukemia, apoptosis, SGC, HY initiation
factor, nucleus; 2.50A {Homo sapiens}
Length = 138
Score = 27.3 bits (60), Expect = 1.4
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 19/78 (24%)
Query: 68 KADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVK 127
D+P +++ + ++ D L + G RED RLPE
Sbjct: 65 NMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVRED------------------LRLPEGDL 106
Query: 128 MDQIKASMENG-VLTVTV 144
+I+ + G + +TV
Sbjct: 107 GKEIEQKYDCGEEILITV 124
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response;
HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 26.7 bits (59), Expect = 1.8
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 55 RVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRV 88
R ++ + PE V G+ K+ V ++ + +
Sbjct: 4 RHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQIL 37
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 26.4 bits (58), Expect = 2.5
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 55 RVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRV 88
+ DW +T V + ++K +V VE + +
Sbjct: 11 KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKEL 44
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II
aldolase, homoprotocatechuate, aromatic DEGR aromatic
hydrocarbons catabolism; 1.60A {Escherichia coli} PDB:
2v5k_A
Length = 287
Score = 26.9 bits (60), Expect = 2.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 121 RLPENVKMDQIKASMENGVLTVTVPKV---EEARKA 153
R N QIK ++ G T+ VP V +EAR+A
Sbjct: 95 RPSWN-DPVQIKQLLDVGTQTLLVPMVQNADEAREA 129
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A
{Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Length = 256
Score = 26.8 bits (60), Expect = 3.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 121 RLPENVKMDQIKASMENGVLTVTVPKV---EEARKA 153
R+P N + IK ++ G +P V EEA A
Sbjct: 75 RVPTN-EPVIIKRLLDIGFYNFLIPFVETKEEAELA 109
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor,
irreversible PROT inhibitor, conformational change,
blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo
sapiens}
Length = 1451
Score = 27.0 bits (58), Expect = 3.5
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 6/78 (7%)
Query: 74 LRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQ--I 131
E E ++ I +G W ++ G+ F L +
Sbjct: 127 SMDENFHPLNELIPLVYIQDPKGNRI----AQWQSFQLEGGLKQFSFPLSSEPFQGSYKV 182
Query: 132 KASMENGVLTVTVPKVEE 149
++G T VEE
Sbjct: 183 VVQKKSGGRTEHPFTVEE 200
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase;
1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 26.3 bits (58), Expect = 4.0
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 9/63 (14%)
Query: 107 HRWERSSGMFSRRFRLPENVKMDQIKASM-ENGVLTV-TVPKVEEARK-------ANAKA 157
H SSG+ L M I + V+ V + E+ A
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMMSTINNQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPA 62
Query: 158 IEI 160
EI
Sbjct: 63 AEI 65
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; 2.00A {Desulfitobacterium hafniense}
Length = 261
Score = 26.5 bits (59), Expect = 4.4
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 121 RLPENVKMDQIKASMENGVLTVTVPKV---EEARKA 153
R+P+ ++ ++ G +P V E R+
Sbjct: 72 RIPQV-DRAHVQRLLDIGAEGFMIPGVQSAETMRET 106
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12
protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of
homoprotocatechuate; 1.39A {Escherichia coli} PDB:
2vwt_A
Length = 267
Score = 26.5 bits (59), Expect = 4.5
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 121 RLPENVKMDQIKASMENGVLTVTVPKV---EEARKA 153
R E IK ++ G T+ +P V E+AR+
Sbjct: 74 RPVEG-SKPLIKQVLDIGAQTLLIPMVDTAEQARQV 108
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 4.8
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 110 ERSS-GMFSRRFRL--PENVKMDQIKASME 136
E+ + +L ++ IKA+ME
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction,
Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR
of basic residues, hydrolase; 1.70A {Homo sapiens}
Length = 196
Score = 25.4 bits (55), Expect = 8.0
Identities = 9/52 (17%), Positives = 19/52 (36%)
Query: 19 FSLDVWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKAD 70
F D F + L GY + + ++A + W + + F+ +
Sbjct: 67 FKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGN 118
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 25.6 bits (57), Expect = 8.2
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 138 GVLTVTVPKVEEAR---KANAKAIEISG 162
GV T V +A K A +++ G
Sbjct: 364 GVALATAESVVDAIERAKHAAGQVKVQG 391
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel,
pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma
commelinae} SCOP: c.1.12.5
Length = 339
Score = 25.5 bits (56), Expect = 8.8
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 121 RLPENVKMDQIKASMENGVLTVTVPKV---EEARKA 153
R+P++ + +++ G + +P V EE R+
Sbjct: 101 RVPKH-DEVSLSTALDAGAAGIVIPHVETVEEVREF 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.391
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,557,857
Number of extensions: 145473
Number of successful extensions: 472
Number of sequences better than 10.0: 1
Number of HSP's gapped: 448
Number of HSP's successfully gapped: 42
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)