RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031266
         (162 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score =  137 bits (346), Expect = 6e-43
 Identities = 94/152 (61%), Positives = 110/152 (72%), Gaps = 5/152 (3%)

Query: 11  RRSSVFDPFSLDVWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKAD 70
           RRS+VFDPF+    DPF  F       S        ET+A  NAR+DWKETPEAHVFKAD
Sbjct: 4   RRSNVFDPFADLWADPFDTFRSIVPAIS----GGGSETAAFANARMDWKETPEAHVFKAD 59

Query: 71  LPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQ 130
           LPG++KEEVKVEVED  VL +SG+R  E+EDKND WHR ERSSG F RRFRL E+ K+++
Sbjct: 60  LPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEE 119

Query: 131 IKASMENGVLTVTVPKVEEARKANAKAIEISG 162
           +KA +ENGVLTVTVPK E   K   KAI+ISG
Sbjct: 120 VKAGLENGVLTVTVPKAEVK-KPEVKAIQISG 150


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 95.1 bits (236), Expect = 1e-26
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 56  VDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGM 115
           +   E  +     A LPG+ KE++ +    D +   + +  +   +     +        
Sbjct: 13  ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEE 72

Query: 116 FSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEI 160
             R  +LP  VK +   A  ENGVL+V +PK E + K   K I I
Sbjct: 73  IYRTIKLPATVKEENASAKFENGVLSVILPKAESSIK---KGINI 114


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 33.0 bits (75), Expect = 0.003
 Identities = 12/95 (12%), Positives = 31/95 (32%), Gaps = 16/95 (16%)

Query: 55  RVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSG 114
           + DW +T    V    +  ++K +V VE  +  +           +  +   +  +    
Sbjct: 4   KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELS-------ALVKLPSGEDYNLK---- 52

Query: 115 MFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEE 149
                  L   +  +Q    + +  + + + K E 
Sbjct: 53  -----LELLHPIIPEQSTFKVLSTKIEIKLKKPEA 82


>d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 148

 Score = 27.3 bits (60), Expect = 0.70
 Identities = 12/110 (10%), Positives = 27/110 (24%), Gaps = 7/110 (6%)

Query: 11  RRSSVFDPFSLDVWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKAD 70
           +R+  +  F L  +D   +            + F  E     +  +     P     +  
Sbjct: 17  KRAGRYGGFLLASYDEDSEELQAICKL---GTGFSDEELEEHHQSLKALVLPS---PRPY 70

Query: 71  LPGLRKEEVKVEVEDDRVLQISGQRGIEREDKNDTWHRWERSSGMFSRRF 120
           +           ++   V ++     +              S    S RF
Sbjct: 71  VRIDGAVIPDHWLDPSAVWEVKC-ADLSLSPIYPAARGLVDSDKGISLRF 119


>d1kjqa1 b.84.2.1 (A:319-392) Glycinamide ribonucleotide
           transformylase PurT, C-domain {Escherichia coli [TaxId:
           562]}
          Length = 74

 Score = 25.5 bits (56), Expect = 1.4
 Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 3/28 (10%)

Query: 138 GVLTVTVPKVEEAR-KAN--AKAIEISG 162
           GV   T   V +A  +A   A  +++ G
Sbjct: 47  GVALATAESVVDAIERAKHAAGQVKVQG 74


>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 115

 Score = 24.5 bits (53), Expect = 3.9
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 3/30 (10%)

Query: 118 RRFRLPENVKMDQIKASM---ENGVLTVTV 144
           R  RLPE + +  +  SM   E G+  + +
Sbjct: 1   RSIRLPETIDLGALYLSMKDTEKGIKELNL 30


>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 192

 Score = 24.7 bits (53), Expect = 6.0
 Identities = 8/44 (18%), Positives = 20/44 (45%)

Query: 27  FRDFPLPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKAD 70
              + +  GY   +S    P+    ++A V +++T +  +F  +
Sbjct: 78  LNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN 121


>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 79

 Score = 23.7 bits (51), Expect = 6.1
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 5/40 (12%)

Query: 122 LPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEIS 161
           +PE+V      A  ++  +TV        R+     I++S
Sbjct: 7   IPEDVD-----AEQDHLDITVEGDNGSVTRRLWYPDIDVS 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 628,589
Number of extensions: 28422
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 11
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.9 bits)