Query 031268
Match_columns 162
No_of_seqs 234 out of 1130
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 11:41:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04666 Nudix_Hydrolase_9 Memb 99.9 1.5E-24 3.3E-29 150.9 14.0 116 23-153 1-116 (122)
2 KOG2839 Diadenosine and diphos 99.9 2.9E-25 6.3E-30 154.6 9.6 123 15-154 1-127 (145)
3 cd03673 Ap6A_hydrolase Diadeno 99.9 9E-24 2E-28 147.4 13.0 123 22-160 1-125 (131)
4 cd04679 Nudix_Hydrolase_20 Mem 99.9 8E-23 1.7E-27 142.2 11.4 120 21-161 1-124 (125)
5 cd04680 Nudix_Hydrolase_21 Mem 99.9 8.7E-23 1.9E-27 140.6 11.0 115 24-161 2-117 (120)
6 cd03428 Ap4A_hydrolase_human_l 99.9 2.3E-22 4.9E-27 140.5 11.9 123 22-161 2-125 (130)
7 cd04677 Nudix_Hydrolase_18 Mem 99.9 5.4E-22 1.2E-26 138.9 10.6 125 21-161 6-131 (132)
8 cd04684 Nudix_Hydrolase_25 Con 99.9 1.7E-21 3.7E-26 135.3 12.5 118 24-159 2-125 (128)
9 cd03430 GDPMH GDP-mannose glyc 99.9 3.5E-21 7.6E-26 137.5 13.6 127 19-159 9-141 (144)
10 PRK15434 GDP-mannose mannosyl 99.9 2.5E-21 5.5E-26 140.2 12.7 130 18-161 13-148 (159)
11 cd04700 DR1025_like DR1025 fro 99.9 2.8E-21 6E-26 137.7 12.7 115 21-157 12-130 (142)
12 cd03674 Nudix_Hydrolase_1 Memb 99.9 2.9E-21 6.3E-26 136.8 12.6 124 22-161 2-133 (138)
13 cd04695 Nudix_Hydrolase_36 Mem 99.9 1.9E-21 4.2E-26 136.5 11.2 115 25-158 2-121 (131)
14 cd04689 Nudix_Hydrolase_30 Mem 99.9 3.3E-21 7.2E-26 134.0 12.1 118 22-160 1-121 (125)
15 cd03671 Ap4A_hydrolase_plant_l 99.9 4.1E-21 8.8E-26 137.5 12.8 124 21-158 2-137 (147)
16 cd04696 Nudix_Hydrolase_37 Mem 99.9 5.1E-21 1.1E-25 133.2 12.5 117 23-158 3-121 (125)
17 cd03672 Dcp2p mRNA decapping e 99.9 5.5E-21 1.2E-25 136.7 12.5 110 24-156 3-115 (145)
18 PRK09438 nudB dihydroneopterin 99.9 3.3E-21 7.1E-26 137.9 11.1 125 21-160 6-138 (148)
19 PLN02325 nudix hydrolase 99.9 5.3E-21 1.2E-25 136.6 11.6 122 19-160 6-133 (144)
20 cd04673 Nudix_Hydrolase_15 Mem 99.9 1.3E-20 2.8E-25 129.9 13.0 105 48-157 12-120 (122)
21 cd04687 Nudix_Hydrolase_28 Mem 99.9 2E-20 4.4E-25 130.6 13.7 115 22-152 1-121 (128)
22 cd04678 Nudix_Hydrolase_19 Mem 99.9 8.6E-21 1.9E-25 132.5 11.3 119 21-160 1-127 (129)
23 cd04667 Nudix_Hydrolase_10 Mem 99.9 1.1E-20 2.3E-25 129.2 11.0 99 47-160 11-109 (112)
24 cd04688 Nudix_Hydrolase_29 Mem 99.9 2.7E-20 5.8E-25 129.6 13.1 110 23-152 2-118 (126)
25 cd04672 Nudix_Hydrolase_14 Mem 99.8 1.8E-20 3.8E-25 130.1 12.0 113 21-153 1-113 (123)
26 cd04690 Nudix_Hydrolase_31 Mem 99.8 1.5E-20 3.3E-25 129.2 11.5 97 47-152 12-110 (118)
27 cd03675 Nudix_Hydrolase_2 Cont 99.8 3.8E-20 8.3E-25 130.0 13.0 99 47-153 11-112 (134)
28 cd04664 Nudix_Hydrolase_7 Memb 99.8 1.8E-20 3.9E-25 131.0 11.2 122 24-161 3-128 (129)
29 cd04669 Nudix_Hydrolase_11 Mem 99.8 3.1E-20 6.8E-25 128.8 11.5 102 24-152 2-114 (121)
30 cd04676 Nudix_Hydrolase_17 Mem 99.8 2.9E-20 6.3E-25 128.9 11.4 124 22-160 2-126 (129)
31 cd04670 Nudix_Hydrolase_12 Mem 99.8 3E-20 6.5E-25 129.5 11.2 108 22-152 2-113 (127)
32 cd04686 Nudix_Hydrolase_27 Mem 99.8 6.1E-20 1.3E-24 129.0 12.7 113 24-153 2-120 (131)
33 cd04511 Nudix_Hydrolase_4 Memb 99.8 5.3E-20 1.1E-24 129.0 12.2 115 19-160 10-129 (130)
34 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 6E-20 1.3E-24 129.5 11.8 110 23-155 3-118 (137)
35 PF00293 NUDIX: NUDIX domain; 99.8 3.9E-20 8.5E-25 129.0 10.7 114 21-154 1-121 (134)
36 COG1051 ADP-ribose pyrophospha 99.8 3.5E-20 7.6E-25 132.5 10.4 112 19-152 7-122 (145)
37 cd04682 Nudix_Hydrolase_23 Mem 99.8 1E-19 2.2E-24 126.2 12.0 96 47-152 12-114 (122)
38 cd04691 Nudix_Hydrolase_32 Mem 99.8 8E-20 1.7E-24 126.0 11.3 93 48-153 12-109 (117)
39 cd04683 Nudix_Hydrolase_24 Mem 99.8 1E-19 2.2E-24 125.5 11.5 101 47-155 11-117 (120)
40 cd04681 Nudix_Hydrolase_22 Mem 99.8 5E-20 1.1E-24 128.7 9.9 108 24-150 3-113 (130)
41 cd03427 MTH1 MutT homolog-1 (M 99.8 1.4E-19 3.1E-24 127.5 12.1 104 47-159 12-119 (137)
42 PRK00714 RNA pyrophosphohydrol 99.8 1.3E-19 2.8E-24 131.1 11.7 127 19-160 5-143 (156)
43 cd04671 Nudix_Hydrolase_13 Mem 99.8 1.2E-19 2.7E-24 126.3 10.9 104 24-153 2-111 (123)
44 cd03426 CoAse Coenzyme A pyrop 99.8 1.2E-19 2.5E-24 131.4 11.2 110 23-152 2-118 (157)
45 cd04661 MRP_L46 Mitochondrial 99.8 1.8E-19 3.9E-24 126.8 10.6 111 46-159 12-127 (132)
46 cd03429 NADH_pyrophosphatase N 99.8 1.7E-19 3.7E-24 126.8 10.2 94 47-152 12-107 (131)
47 PRK15472 nucleoside triphospha 99.8 2E-19 4.4E-24 127.6 10.6 103 47-152 15-125 (141)
48 cd04697 Nudix_Hydrolase_38 Mem 99.8 4.2E-19 9.1E-24 123.8 11.4 107 24-154 2-114 (126)
49 cd02885 IPP_Isomerase Isopente 99.8 6.1E-19 1.3E-23 128.5 12.5 119 19-156 26-152 (165)
50 cd04692 Nudix_Hydrolase_33 Mem 99.8 9E-19 2E-23 124.8 12.5 120 21-154 1-129 (144)
51 cd04693 Nudix_Hydrolase_34 Mem 99.8 6.1E-19 1.3E-23 122.9 10.8 108 24-155 2-116 (127)
52 cd04662 Nudix_Hydrolase_5 Memb 99.8 6E-19 1.3E-23 122.6 10.6 58 23-90 1-65 (126)
53 PRK10546 pyrimidine (deoxy)nuc 99.8 4.1E-18 8.9E-23 119.7 12.6 100 47-158 15-119 (135)
54 PRK03759 isopentenyl-diphospha 99.8 3.5E-18 7.5E-23 126.7 12.7 120 19-156 31-156 (184)
55 cd04699 Nudix_Hydrolase_39 Mem 99.8 5E-18 1.1E-22 118.0 11.4 100 47-155 13-117 (129)
56 PRK11762 nudE adenosine nucleo 99.8 7.4E-18 1.6E-22 125.0 12.7 99 47-155 59-162 (185)
57 PRK15393 NUDIX hydrolase YfcD; 99.8 7E-18 1.5E-22 124.7 11.8 96 47-153 49-150 (180)
58 cd04665 Nudix_Hydrolase_8 Memb 99.8 7.1E-18 1.5E-22 116.6 10.9 91 48-149 12-102 (118)
59 PRK10729 nudF ADP-ribose pyrop 99.8 1.9E-17 4.1E-22 124.4 12.1 112 23-156 50-175 (202)
60 TIGR00052 nudix-type nucleosid 99.7 1.2E-17 2.6E-22 123.9 10.7 112 23-156 45-169 (185)
61 cd04694 Nudix_Hydrolase_35 Mem 99.7 3.5E-17 7.6E-22 116.7 12.6 106 47-154 13-133 (143)
62 cd02883 Nudix_Hydrolase Nudix 99.7 2.8E-17 6.1E-22 112.1 11.6 108 24-152 2-112 (123)
63 PRK05379 bifunctional nicotina 99.7 3.2E-17 7E-22 132.0 13.6 112 21-152 202-322 (340)
64 PRK00241 nudC NADH pyrophospha 99.7 9.6E-18 2.1E-22 130.1 9.6 95 47-153 143-239 (256)
65 cd04685 Nudix_Hydrolase_26 Mem 99.7 6.4E-17 1.4E-21 114.1 11.6 108 24-152 2-123 (133)
66 PRK10776 nucleoside triphospha 99.7 8.2E-17 1.8E-21 111.7 11.8 94 47-152 16-113 (129)
67 TIGR02150 IPP_isom_1 isopenten 99.7 9.5E-17 2.1E-21 116.3 11.9 114 19-154 24-144 (158)
68 TIGR02705 nudix_YtkD nucleosid 99.7 2.7E-16 5.8E-21 113.3 12.2 93 48-154 36-129 (156)
69 cd03425 MutT_pyrophosphohydrol 99.7 2.9E-16 6.2E-21 107.8 11.9 94 47-152 13-110 (124)
70 cd03676 Nudix_hydrolase_3 Memb 99.7 6.2E-16 1.3E-20 114.1 13.5 124 19-156 29-162 (180)
71 PRK10707 putative NUDIX hydrol 99.7 4.6E-16 9.9E-21 115.8 12.5 112 21-153 29-147 (190)
72 TIGR00586 mutt mutator mutT pr 99.7 5.3E-16 1.1E-20 107.8 11.9 94 47-152 16-113 (128)
73 PRK15009 GDP-mannose pyrophosp 99.7 9.8E-16 2.1E-20 114.1 12.3 111 23-156 46-170 (191)
74 cd04663 Nudix_Hydrolase_6 Memb 99.6 4.1E-15 8.8E-20 103.6 11.4 43 46-89 13-55 (126)
75 cd03670 ADPRase_NUDT9 ADP-ribo 99.6 5.7E-15 1.2E-19 109.2 12.0 45 44-88 46-90 (186)
76 cd04674 Nudix_Hydrolase_16 Mem 99.6 1.4E-14 3.1E-19 100.0 11.7 44 48-91 16-62 (118)
77 PRK08999 hypothetical protein; 99.6 2E-14 4.3E-19 114.5 12.2 94 47-152 17-114 (312)
78 PLN02709 nudix hydrolase 99.6 3.8E-14 8.3E-19 107.2 10.7 118 19-152 29-155 (222)
79 COG0494 MutT NTP pyrophosphohy 99.5 4.2E-13 9E-18 93.7 10.4 102 47-153 24-135 (161)
80 COG2816 NPY1 NTP pyrophosphohy 99.5 9.8E-14 2.1E-18 107.4 5.6 96 48-155 156-253 (279)
81 PLN03143 nudix hydrolase; Prov 99.4 2.9E-12 6.2E-17 100.8 13.0 45 46-90 142-191 (291)
82 COG4119 Predicted NTP pyrophos 99.4 2.8E-12 6.1E-17 87.8 8.7 69 21-99 2-77 (161)
83 PLN02552 isopentenyl-diphospha 99.4 1.5E-11 3.2E-16 94.8 12.4 123 19-154 53-205 (247)
84 PLN02791 Nudix hydrolase homol 99.3 4.9E-11 1.1E-15 104.1 13.1 122 19-155 29-161 (770)
85 KOG3084 NADH pyrophosphatase I 99.3 6.4E-13 1.4E-17 103.6 1.2 100 47-158 200-305 (345)
86 KOG3041 Nucleoside diphosphate 99.1 2.5E-09 5.5E-14 78.5 12.3 48 45-92 86-137 (225)
87 KOG3069 Peroxisomal NUDIX hydr 98.9 9E-09 1.9E-13 77.6 9.6 115 22-152 42-163 (246)
88 cd03431 DNA_Glycosylase_C DNA 98.9 3.1E-08 6.8E-13 67.3 11.3 88 47-152 14-105 (118)
89 KOG0648 Predicted NUDIX hydrol 98.9 1.6E-09 3.4E-14 84.6 3.7 110 22-152 115-231 (295)
90 PLN02839 nudix hydrolase 98.7 1.4E-07 3.1E-12 76.0 10.3 104 46-154 217-329 (372)
91 COG1443 Idi Isopentenyldiphosp 98.6 2.6E-07 5.6E-12 66.9 7.7 116 21-154 32-155 (185)
92 KOG4195 Transient receptor pot 98.5 2.2E-07 4.7E-12 69.6 5.2 66 20-85 110-177 (275)
93 PF14815 NUDIX_4: NUDIX domain 98.1 1.2E-05 2.7E-10 54.7 6.2 91 47-152 9-103 (114)
94 KOG2937 Decapping enzyme compl 97.8 6E-06 1.3E-10 65.3 0.2 56 23-90 83-138 (348)
95 PF13869 NUDIX_2: Nucleotide h 97.7 8.1E-05 1.8E-09 55.0 5.0 60 19-89 40-99 (188)
96 COG4112 Predicted phosphoester 97.1 0.012 2.7E-07 42.4 10.0 98 47-151 72-186 (203)
97 KOG4432 Uncharacterized NUDIX 96.8 0.0063 1.4E-07 48.0 7.3 61 61-129 82-142 (405)
98 KOG1689 mRNA cleavage factor I 96.6 0.0053 1.1E-07 44.6 5.1 57 19-86 66-122 (221)
99 KOG0142 Isopentenyl pyrophosph 96.0 0.034 7.4E-07 41.5 6.7 115 21-155 51-186 (225)
100 KOG4548 Mitochondrial ribosoma 95.6 0.13 2.9E-06 39.6 8.8 103 47-153 139-248 (263)
101 KOG4313 Thiamine pyrophosphoki 95.3 0.15 3.3E-06 39.4 8.1 102 47-153 148-259 (306)
102 PRK10880 adenine DNA glycosyla 92.8 0.97 2.1E-05 36.9 8.6 35 47-88 242-280 (350)
103 KOG4432 Uncharacterized NUDIX 91.7 0.86 1.9E-05 36.3 6.8 84 61-153 287-377 (405)
104 PF07026 DUF1317: Protein of u 84.0 2.4 5.1E-05 25.3 3.6 23 49-71 13-35 (60)
105 PF03487 IL13: Interleukin-13; 80.2 1.9 4.1E-05 23.6 2.1 23 63-85 14-36 (43)
106 PF14443 DBC1: DBC1 74.9 25 0.00055 24.4 7.6 46 46-91 7-60 (126)
107 KOG2937 Decapping enzyme compl 46.6 4.7 0.0001 32.6 -0.8 32 58-89 264-295 (348)
108 TIGR01084 mutY A/G-specific ad 43.7 87 0.0019 24.7 5.9 19 47-65 239-261 (275)
109 PF12860 PAS_7: PAS fold 37.5 16 0.00034 24.0 0.8 33 47-79 15-47 (115)
110 PF09505 Dimeth_Pyl: Dimethyla 35.2 24 0.00052 28.8 1.6 25 65-89 407-431 (466)
111 PF14044 NETI: NETI protein 34.3 33 0.00072 20.4 1.7 21 66-88 3-23 (57)
112 COG4111 Uncharacterized conser 31.5 2.4E+02 0.0052 22.4 6.3 49 46-99 36-85 (322)
113 KOG0648 Predicted NUDIX hydrol 28.7 30 0.00065 27.7 1.1 31 59-90 56-86 (295)
114 COG1598 Predicted nuclease of 25.7 1.7E+02 0.0036 17.9 4.1 24 64-88 24-47 (73)
115 PF13014 KH_3: KH domain 25.1 53 0.0011 17.7 1.4 15 78-92 13-27 (43)
116 PF09999 DUF2240: Uncharacteri 25.0 29 0.00064 24.7 0.5 14 140-153 30-43 (144)
117 PF15533 Toxin_54: Putative to 24.6 84 0.0018 19.2 2.3 20 53-72 41-60 (66)
118 COG0828 RpsU Ribosomal protein 23.0 65 0.0014 19.8 1.6 28 62-89 1-30 (67)
119 PRK13910 DNA glycosylase MutY; 23.0 1.5E+02 0.0033 23.6 4.1 18 47-64 197-217 (289)
120 PF06453 LT-IIB: Type II heat- 21.8 74 0.0016 21.4 1.8 29 50-79 60-88 (122)
No 1
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.93 E-value=1.5e-24 Score=150.88 Aligned_cols=116 Identities=44% Similarity=0.726 Sum_probs=89.3
Q ss_pred eEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEee
Q 031268 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFR 102 (162)
Q Consensus 23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~ 102 (162)
+++|+||++.++ +..+|||+++...+.|.||||++++|||+++||+||++||||+.+.....+++.+.+.
T Consensus 1 ~~~g~v~~~~~~----------~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~ 70 (122)
T cd04666 1 LQAGAIPYRETG----------GEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYR 70 (122)
T ss_pred CEEEEEEEEEcC----------CceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEee
Confidence 478999999764 3579999999877889999999999999999999999999999865441367887765
Q ss_pred cccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268 103 SKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK 153 (162)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~ 153 (162)
..... ......+++|.+.+......+++.+...++|+++++|.+++
T Consensus 71 ~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~ 116 (122)
T cd04666 71 KRSKN-----RPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLV 116 (122)
T ss_pred ecCCC-----CCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhc
Confidence 44211 12234677888877665444455556789999999999875
No 2
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.92 E-value=2.9e-25 Score=154.62 Aligned_cols=123 Identities=45% Similarity=0.709 Sum_probs=101.1
Q ss_pred cccc-cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268 15 QRYE-DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLD 92 (162)
Q Consensus 15 ~~~~-~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~ 92 (162)
+||+ .|+|+++||||++.++ ...+||||...+ .+.|.+|+|++|++||..+||+||..||+|+.+...
T Consensus 1 qry~~~G~r~vagCi~~r~~~----------~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~ 70 (145)
T KOG2839|consen 1 QRYDPAGFRLVAGCICYRSDK----------EKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLG 70 (145)
T ss_pred CccCCCCcEEEEEeeeeeecC----------cceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeee
Confidence 4677 8999999999999885 257999999987 567999999999999999999999999999998877
Q ss_pred CCCeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccc--cceeEEeeHhHHhhhhc
Q 031268 93 ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQA--NYKRIWVSNNHFLWRKH 154 (162)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~--~~~~~W~~~~ea~~~~~ 154 (162)
..+.+.+++.+..... .+..++|.+.+.+....+|+.+ .++.+|++++||...+.
T Consensus 71 ~~~~g~~~~~~~~~~~-------~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~ 127 (145)
T KOG2839|consen 71 RLLGGFEDFLSKKHRT-------KPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQ 127 (145)
T ss_pred ccccchhhccChhhcc-------cccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHh
Confidence 3355555565554332 2467889888888888888777 68999999999998754
No 3
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.91 E-value=9e-24 Score=147.41 Aligned_cols=123 Identities=27% Similarity=0.311 Sum_probs=90.2
Q ss_pred eeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 101 (162)
Q Consensus 22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~ 101 (162)
+++|++|+++.++ ++++|||+++++.+.|.||||++++|||+++||.||++||||+.+... ..++.+.+
T Consensus 1 ~~~a~~ii~~~~~----------~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~-~~~~~~~~ 69 (131)
T cd03673 1 VLAAGGVVFRGSD----------GGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVG-DPLGTIRY 69 (131)
T ss_pred CeeEEEEEEEccC----------CCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEec-ceEEEEEE
Confidence 4688999998764 368999999987788999999999999999999999999999998766 46776655
Q ss_pred ecccccccCCCCCCceEEEEEEEEecccccCC-cccccceeEEeeHhHHhhhh-ccccccc
Q 031268 102 RSKSRMNSCNSKEGGCRGYMFALEVTEELESW-PEQANYKRIWVSNNHFLWRK-HSNLVGM 160 (162)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~W~~~~ea~~~~-~~~l~~~ 160 (162)
...... .......++|.+......... ++.+..+++|++++++.+++ .++.+++
T Consensus 70 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~ 125 (131)
T cd03673 70 WFSSSG-----KRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDREL 125 (131)
T ss_pred eccCCC-----CCcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcCCHhHHHH
Confidence 443211 112335667776654432221 34455789999999999864 4555544
No 4
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.89 E-value=8e-23 Score=142.20 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=86.9
Q ss_pred ceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG 97 (162)
Q Consensus 21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~ 97 (162)
+|..|++++++.+ ++|||++|.. .+.|.||||++|+|||+++||+||++||||+.+... ..++
T Consensus 1 ~~~~~~~~i~~~~-------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~-~~~~ 66 (125)
T cd04679 1 PRVGCGAAILRDD-------------GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHST-RLLC 66 (125)
T ss_pred CceEEEEEEECCC-------------CEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccc-eEEE
Confidence 4788999999764 4899999864 367999999999999999999999999999998766 4566
Q ss_pred eEEeecccccccCCCCCCceEEEEEEEEecccccC-CcccccceeEEeeHhHHhhhhcccccccc
Q 031268 98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELES-WPEQANYKRIWVSNNHFLWRKHSNLVGMI 161 (162)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~W~~~~ea~~~~~~~l~~~v 161 (162)
.+.+..... .......+|.+........ ..+++..+++||+++++.+.+.+..+.+|
T Consensus 67 ~~~~~~~~~-------~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~~~~~~~~ 124 (125)
T cd04679 67 VVDHIIEEP-------PQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLTRATRDAV 124 (125)
T ss_pred EEeecccCC-------CCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhHHHHHHHh
Confidence 554332211 1123445676665433222 22234578999999999988877777665
No 5
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.89 E-value=8.7e-23 Score=140.62 Aligned_cols=115 Identities=21% Similarity=0.196 Sum_probs=85.1
Q ss_pred EEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccc-cCCCCeeeEEee
Q 031268 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL-LDENPLGEWEFR 102 (162)
Q Consensus 24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~-~~~~~l~~~~~~ 102 (162)
.|.+++++.+ ++|||++++..+.|.||||++++|||+++||+||++||||+.+. .. ..++.+.+.
T Consensus 2 ~~~~~i~~~~-------------~~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~-~~~~~~~~~ 67 (120)
T cd04680 2 GARAVVTDAD-------------GRVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVA-ELLGVYYHS 67 (120)
T ss_pred ceEEEEECCC-------------CeEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCcccccc-ceEEEEecC
Confidence 4567777654 48999999877789999999999999999999999999999987 55 566766554
Q ss_pred cccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhcccccccc
Q 031268 103 SKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHSNLVGMI 161 (162)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~~l~~~v 161 (162)
.... ....++|.+.........++.+..+++||+++++.+.+.+..++++
T Consensus 68 ~~~~---------~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~~~~~~~~~~~ 117 (120)
T cd04680 68 ASGS---------WDHVIVFRARADTQPVIRPSHEISEARFFPPDALPEPTTPATRRRI 117 (120)
T ss_pred CCCC---------ceEEEEEEecccCCCccCCcccEEEEEEECHHHCcccCChHHHHHh
Confidence 3211 2245677776554322334445578999999999988776666554
No 6
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.89 E-value=2.3e-22 Score=140.54 Aligned_cols=123 Identities=20% Similarity=0.194 Sum_probs=86.4
Q ss_pred eeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 101 (162)
Q Consensus 22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~ 101 (162)
+.++|+|+|..++ ++.+|||+++++ +.|.+|||++++|||+.+||+||++||||+.+... ..++.+.+
T Consensus 2 ~~~~g~vi~~~~~----------~~~~vLl~~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~~~~~ 69 (130)
T cd03428 2 ERSAGAIIYRRLN----------NEIEYLLLQASY-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQL-FIVLGFKE 69 (130)
T ss_pred ceEEEEEEEEecC----------CCceEEEEEccC-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhh-hhhcccee
Confidence 4578999999765 467899999987 88999999999999999999999999999997765 34332221
Q ss_pred ecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh-cccccccc
Q 031268 102 RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK-HSNLVGMI 161 (162)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~-~~~l~~~v 161 (162)
...... .......++|.+.+..........+..++.|++++++.+++ .++++.++
T Consensus 70 ~~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~ 125 (130)
T cd03428 70 TLNYQV-----RGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLTYEDLKAVL 125 (130)
T ss_pred EEEccc-----cCcceEEEEEEEEeCCCCccccccceeeEEeecHHHHHHHcCchhHHHHH
Confidence 111000 01123566777776532222222456789999999999985 56666543
No 7
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.88 E-value=5.4e-22 Score=138.88 Aligned_cols=125 Identities=18% Similarity=0.096 Sum_probs=82.0
Q ss_pred ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEE
Q 031268 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE 100 (162)
Q Consensus 21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~ 100 (162)
.+..|++++++.+ ++|||++|...+.|.||||++++|||+.+||+||++||||+.+... ..++.+.
T Consensus 6 ~~~~~~~~v~~~~-------------~~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~-~~~~~~~ 71 (132)
T cd04677 6 ILVGAGVILLNEQ-------------GEVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEEL-ELLGVYS 71 (132)
T ss_pred cccceEEEEEeCC-------------CCEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeee-EEEEEec
Confidence 3455666666543 4899999887788999999999999999999999999999998765 3555442
Q ss_pred eecccccccCCCCCCceEE-EEEEEEecccccCCcccccceeEEeeHhHHhhhhcccccccc
Q 031268 101 FRSKSRMNSCNSKEGGCRG-YMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHSNLVGMI 161 (162)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~~l~~~v 161 (162)
....... .. ........ ++|...........+..+...++||+++++.+++.+..++|+
T Consensus 72 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~ 131 (132)
T cd04677 72 GKEFYVK-PN-GDDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELINPQHKEML 131 (132)
T ss_pred CCceeec-CC-CCcEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchhHHHHHhh
Confidence 1110000 00 01111122 334333332222334445578999999999999888887775
No 8
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.87 E-value=1.7e-21 Score=135.34 Aligned_cols=118 Identities=19% Similarity=0.152 Sum_probs=82.4
Q ss_pred EEEEEEEeccCCcccccccccCceEEEEEEeCCC---CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEE
Q 031268 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR---DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE 100 (162)
Q Consensus 24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~ 100 (162)
.|.+|+++. ++|||+++++. +.|.||||++|+|||+++||+||++||||+.+... ..++.+.
T Consensus 2 ~~~~ii~~~--------------~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~~ 66 (128)
T cd04684 2 GAYAVIPRD--------------GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIG-RRLGSAS 66 (128)
T ss_pred eeEEEEEeC--------------CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecc-eeeeEEE
Confidence 466777764 38999999764 77999999999999999999999999999997765 4677655
Q ss_pred eecccccccCCCCCCceEEEEEEEEeccccc--CCcccccceeEEeeHhHHhhh-hcccccc
Q 031268 101 FRSKSRMNSCNSKEGGCRGYMFALEVTEELE--SWPEQANYKRIWVSNNHFLWR-KHSNLVG 159 (162)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~W~~~~ea~~~-~~~~l~~ 159 (162)
+........ .......++|.+....... ..++.+..+++|++++++.++ +.+..++
T Consensus 67 ~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~ 125 (128)
T cd04684 67 RYFYSPDGD---YDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSPLVLW 125 (128)
T ss_pred EEEECCCCC---eeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCCCHHHHH
Confidence 433221100 0112355677776655432 233444578999999999965 5555444
No 9
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.87 E-value=3.5e-21 Score=137.48 Aligned_cols=127 Identities=18% Similarity=0.205 Sum_probs=83.8
Q ss_pred cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC-C
Q 031268 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-N 94 (162)
Q Consensus 19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~-~ 94 (162)
.-++.+|++|+++.+ ++|||++|.. .+.|.||||++++|||+++||+||++||||+.+.... .
T Consensus 9 ~~p~v~v~~vI~~~~-------------g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~ 75 (144)
T cd03430 9 NTPLVSIDLIVENED-------------GQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAE 75 (144)
T ss_pred CCCeEEEEEEEEeCC-------------CeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccce
Confidence 345788989998754 4899999864 4679999999999999999999999999999876441 2
Q ss_pred CeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh--hcccccc
Q 031268 95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR--KHSNLVG 159 (162)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~--~~~~l~~ 159 (162)
.++.+......... ..+...+....+|.+.........+..+..+++|++++++.+. +++..+.
T Consensus 76 ~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~ 141 (144)
T cd03430 76 LLGVFEHFYDDNFF-GDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLADDDVHPNTKA 141 (144)
T ss_pred EEEEEEEEeccccc-cCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcCCCcCHHHHH
Confidence 45555432211100 0011122334556665543322234445679999999999964 5555443
No 10
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.87 E-value=2.5e-21 Score=140.24 Aligned_cols=130 Identities=19% Similarity=0.202 Sum_probs=84.8
Q ss_pred ccCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccC-C
Q 031268 18 EDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLD-E 93 (162)
Q Consensus 18 ~~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~-~ 93 (162)
...+..+|++|+++.. ++|||++|.. .+.|.||||+||+|||+++||+||++||||+.+... .
T Consensus 13 ~~~~~~~v~~vI~~~~-------------g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~ 79 (159)
T PRK15434 13 RSTPLISLDFIVENSR-------------GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAG 79 (159)
T ss_pred cCCceEEEEEEEECCC-------------CEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccc
Confidence 3455678888887643 5999999864 367999999999999999999999999999986432 1
Q ss_pred CCeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh--hcccccccc
Q 031268 94 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR--KHSNLVGMI 161 (162)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~--~~~~l~~~v 161 (162)
.+++.+.+........ .....+....+|.+..........+.++.+++|++++++.+. +++..+.++
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~ 148 (159)
T PRK15434 80 QFYGVWQHFYDDNFSG-TDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLASDNVHANSRAYF 148 (159)
T ss_pred eEEEEEEeecccccCC-CccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhccccCHHHHHHh
Confidence 3445443222111000 000112345567776554322333335689999999999874 555555443
No 11
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.87 E-value=2.8e-21 Score=137.68 Aligned_cols=115 Identities=20% Similarity=0.104 Sum_probs=82.1
Q ss_pred ceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG 97 (162)
Q Consensus 21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~ 97 (162)
+..+|++++++.+ ++|||++++. .+.|+||||++++|||+++||+||++||||+++... ..++
T Consensus 12 ~~~av~~vv~~~~-------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~-~~~~ 77 (142)
T cd04700 12 EARAAGAVILNER-------------NDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPV-KFLG 77 (142)
T ss_pred eeeeEEEEEEeCC-------------CcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeecc-EEEE
Confidence 4578888888754 3799998764 356999999999999999999999999999998766 4666
Q ss_pred eEEeecccccccCCCCCCceEEEEEEEEecccc-cCCcccccceeEEeeHhHHhhhhcccc
Q 031268 98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL-ESWPEQANYKRIWVSNNHFLWRKHSNL 157 (162)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~W~~~~ea~~~~~~~l 157 (162)
.+.+..... .....++|.+...... ......+..+++||+++++.+++.++-
T Consensus 78 ~~~~~~~~~--------~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~ 130 (142)
T cd04700 78 TYLGRFDDG--------VLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQGQ 130 (142)
T ss_pred EEEEEcCCC--------cEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhcccccc
Confidence 654332211 1123466777654321 112234567899999999999876543
No 12
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.87 E-value=2.9e-21 Score=136.84 Aligned_cols=124 Identities=16% Similarity=0.141 Sum_probs=79.4
Q ss_pred eeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee----
Q 031268 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG---- 97 (162)
Q Consensus 22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~---- 97 (162)
+++|++++++.+ .++|||++++..+.|.+|||++|+|||+++||.||++||||+.+... ...+
T Consensus 2 ~~~~~~~v~~~~------------~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~-~~~~~~~~ 68 (138)
T cd03674 2 HFTASAFVVNPD------------RGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGL-RPLSVLVD 68 (138)
T ss_pred cEEEEEEEEeCC------------CCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccc-eecccccc
Confidence 567888888764 25999999988888999999999999999999999999999986543 2222
Q ss_pred --eEEeecccccccCCCCCCceEEEEEEEEecccccC-CcccccceeEEeeHhHHhhh-hcccccccc
Q 031268 98 --EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELES-WPEQANYKRIWVSNNHFLWR-KHSNLVGMI 161 (162)
Q Consensus 98 --~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~W~~~~ea~~~-~~~~l~~~v 161 (162)
.+......... .....+...+|.+........ .++.+..+++|++++++..+ +.+..+++|
T Consensus 69 ~~~~~~~~~~~~~---~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~i 133 (138)
T cd03674 69 LDVHPIDGHPKRG---VPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASLELPEDVRRLV 133 (138)
T ss_pred ceeEeecCCCCCC---CCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhccCCHHHHHHH
Confidence 11111110000 001112234566654332222 13445578999999999765 445554443
No 13
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.87 E-value=1.9e-21 Score=136.50 Aligned_cols=115 Identities=18% Similarity=0.066 Sum_probs=77.8
Q ss_pred EEEEEEeccCCcccccccccCceEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeee--EE
Q 031268 25 AGCIPYKFEKNDENKNCKMEKKVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE--WE 100 (162)
Q Consensus 25 v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~--~~ 100 (162)
+|+|+++..+ ++++|||++|.. .+.|.+|||++++|||+.+||+||++||||+++... ...+. ..
T Consensus 2 ~~~v~~~~~~----------~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~ 70 (131)
T cd04695 2 VSGVLLRSLD----------KETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPEL-YNADYLEQF 70 (131)
T ss_pred ceEEEEEEcC----------CCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCcccc-ccccceeeE
Confidence 6778877654 357999999987 678999999999999999999999999999987533 11111 11
Q ss_pred eecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh-ccccc
Q 031268 101 FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK-HSNLV 158 (162)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~-~~~l~ 158 (162)
|.... .......+|.+.........++.+..+++|++++++.++. .++.+
T Consensus 71 ~~~~~--------~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~ 121 (131)
T cd04695 71 YEAND--------NRILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPFPGQR 121 (131)
T ss_pred eecCC--------ceEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhcCChhHH
Confidence 22111 1122345566655432222234456889999999999874 34443
No 14
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.87 E-value=3.3e-21 Score=134.01 Aligned_cols=118 Identities=22% Similarity=0.144 Sum_probs=80.1
Q ss_pred eeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 101 (162)
Q Consensus 22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~ 101 (162)
+++|++|+++. ++|||+++...+.|.+|||++|+|||+.+||+||++||||+.+... ..++.+.+
T Consensus 1 ~~~~~~vi~~~--------------~~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~-~~l~~~~~ 65 (125)
T cd04689 1 HLRARAIVRAG--------------NKVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDG-RFLGAIEN 65 (125)
T ss_pred CeEEEEEEEeC--------------CEEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeecc-EEEEEEee
Confidence 46788888853 3899999987788999999999999999999999999999998765 56666543
Q ss_pred ecccccccCCCCCCceEEEEEEEEecccc---cCCcccccceeEEeeHhHHhhhhccccccc
Q 031268 102 RSKSRMNSCNSKEGGCRGYMFALEVTEEL---ESWPEQANYKRIWVSNNHFLWRKHSNLVGM 160 (162)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~~~W~~~~ea~~~~~~~l~~~ 160 (162)
...... .......++|.+...... ....+.+..+++|++++++. .....|.++
T Consensus 66 ~~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~-~~p~~l~~~ 121 (125)
T cd04689 66 QWHEKG-----VRTHEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLS-LYPALLRDL 121 (125)
T ss_pred eeccCC-----ceEEEEEEEEEEEcccccccCCccCccceEEEEEccHHHcc-cCcHHHHHH
Confidence 322111 111223466766654321 11223335789999999954 334444433
No 15
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.87 E-value=4.1e-21 Score=137.45 Aligned_cols=124 Identities=18% Similarity=0.181 Sum_probs=81.7
Q ss_pred ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeE
Q 031268 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEW 99 (162)
Q Consensus 21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~ 99 (162)
+|.+|++|+++.+ ++|||++|... +.|.+|||++|+|||+.+||+||++||||+.+... ..++..
T Consensus 2 ~~~~v~~ii~~~~-------------~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~-~~l~~~ 67 (147)
T cd03671 2 YRPNVGVVLFNED-------------GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSV-EIIAEI 67 (147)
T ss_pred CCceEEEEEEeCC-------------CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCce-EEEEEc
Confidence 5678999998754 48999999776 48999999999999999999999999999997544 344432
Q ss_pred ----Eeecccc--cccCCCCCCceEEEEEEEEecc---cccCCc--ccccceeEEeeHhHHhhhhccccc
Q 031268 100 ----EFRSKSR--MNSCNSKEGGCRGYMFALEVTE---ELESWP--EQANYKRIWVSNNHFLWRKHSNLV 158 (162)
Q Consensus 100 ----~~~~~~~--~~~~~~~~~~~~~~~f~~~~~~---~~~~~~--~~~~~~~~W~~~~ea~~~~~~~l~ 158 (162)
.|..... .....+.......++|.+.+.. .....+ +.+..+++|++++++.+++.+..+
T Consensus 68 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~~~~ 137 (147)
T cd03671 68 PDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVPFKR 137 (147)
T ss_pred CCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchhhhH
Confidence 2222110 0000000011234556555543 111112 345689999999999998765443
No 16
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.86 E-value=5.1e-21 Score=133.16 Aligned_cols=117 Identities=22% Similarity=0.138 Sum_probs=77.4
Q ss_pred eEEEEEEEeccCCcccccccccCceEEEEEEeCC-CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 101 (162)
Q Consensus 23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~ 101 (162)
.+|++++++.+ ++|||+++.. .+.|.||||++++|||+++||+||++||||+++... ..++...+
T Consensus 3 ~~v~~~i~~~~-------------~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~~~~~ 68 (125)
T cd04696 3 VTVGALIYAPD-------------GRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDI-KFAMVQEA 68 (125)
T ss_pred cEEEEEEECCC-------------CCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCccccc-ceEEEEEE
Confidence 46778888744 3899998753 578999999999999999999999999999987655 34444333
Q ss_pred ecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh-hccccc
Q 031268 102 RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLV 158 (162)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~ 158 (162)
....... .......+.|.+..... ....+.+..+++||+++++.++ +.+...
T Consensus 69 ~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~~~~~ 121 (125)
T cd04696 69 IFSEEFH----KPAHFVLFDFFARTDGT-EVTPNEEIVEWEWVTPEEALDYPLNSFTR 121 (125)
T ss_pred eccCCCC----CccEEEEEEEEEEecCC-cccCCcccceeEEECHHHHhcCCCCHHHH
Confidence 2211100 11122334455554432 1223345688999999999887 444333
No 17
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.86 E-value=5.5e-21 Score=136.67 Aligned_cols=110 Identities=21% Similarity=0.212 Sum_probs=74.8
Q ss_pred EEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeec
Q 031268 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRS 103 (162)
Q Consensus 24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~ 103 (162)
++|+|+++.++ ++|||+++...+.|+||||++|+|||+.+||+||++||||+.+... .....| ..
T Consensus 3 ~~gaii~~~~~------------~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~-~~~~~~--~~ 67 (145)
T cd03672 3 VYGAIILNEDL------------DKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKY-IDKDDY--IE 67 (145)
T ss_pred eeEEEEEeCCC------------CEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceec-ccccee--ee
Confidence 68899998642 4899999877778999999999999999999999999999987643 111222 11
Q ss_pred ccccccCCCCCCceEEEEEEEE-eccccc--CCcccccceeEEeeHhHHhhhhccc
Q 031268 104 KSRMNSCNSKEGGCRGYMFALE-VTEELE--SWPEQANYKRIWVSNNHFLWRKHSN 156 (162)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~f~~~-~~~~~~--~~~~~~~~~~~W~~~~ea~~~~~~~ 156 (162)
.... ....++|.+. ...... ..++.+..+++||+++++.+++...
T Consensus 68 ~~~~--------~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~ 115 (145)
T cd03672 68 LIIR--------GQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKK 115 (145)
T ss_pred cccC--------CcEEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhc
Confidence 1100 1133444443 222111 1223456799999999999886554
No 18
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.86 E-value=3.3e-21 Score=137.93 Aligned_cols=125 Identities=19% Similarity=0.179 Sum_probs=79.6
Q ss_pred ceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC-CCee-
Q 031268 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-NPLG- 97 (162)
Q Consensus 21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~-~~l~- 97 (162)
.+.+|++|+++.+ ++|||++|.. .+.|.+|||++|+|||+.+||+||++||||+.+.... ..++
T Consensus 6 ~~~~v~~vi~~~~-------------~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~ 72 (148)
T PRK09438 6 RPVSVLVVIYTPD-------------LGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDC 72 (148)
T ss_pred CceEEEEEEEeCC-------------CeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeeccc
Confidence 3567888888764 3799998865 4679999999999999999999999999999873221 1111
Q ss_pred ----eEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh-hccccccc
Q 031268 98 ----EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLVGM 160 (162)
Q Consensus 98 ----~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~~~ 160 (162)
.|.+....... +.........++|.+.........++ +..+++|++++++.++ ..++.+++
T Consensus 73 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~-E~~~~~W~~~~e~~~~~~~~~~~~~ 138 (148)
T PRK09438 73 QRSIEYEIFPHWRHR-YAPGVTRNTEHWFCLALPHERPVVLT-EHLAYQWLDAREAAALTKSWSNAEA 138 (148)
T ss_pred ccccccccchhhhhc-cccccCCceeEEEEEecCCCCccccC-cccceeeCCHHHHHHHhcChhHHHH
Confidence 11111000000 00011123557777765443222223 5689999999999997 45555544
No 19
>PLN02325 nudix hydrolase
Probab=99.86 E-value=5.3e-21 Score=136.60 Aligned_cols=122 Identities=16% Similarity=0.067 Sum_probs=82.4
Q ss_pred cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCC
Q 031268 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENP 95 (162)
Q Consensus 19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~ 95 (162)
..++..|++++++. ++|||++|.. .+.|.+|||+++.|||+.+||+||++||||+++... ..
T Consensus 6 ~~p~~~v~~vi~~~--------------~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~-~~ 70 (144)
T PLN02325 6 PIPRVAVVVFLLKG--------------NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKI-EL 70 (144)
T ss_pred CCCeEEEEEEEEcC--------------CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcce-EE
Confidence 34567777777763 3899999875 467999999999999999999999999999998766 46
Q ss_pred eeeEEeecccccccCCCCCCceEEEEEEEEeccccc---CCcccccceeEEeeHhHHhhhhccccccc
Q 031268 96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELE---SWPEQANYKRIWVSNNHFLWRKHSNLVGM 160 (162)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~~~~~~~~~W~~~~ea~~~~~~~l~~~ 160 (162)
++.+++...... ...+....+|.+...+... ....++..+++||+++++...+...++.+
T Consensus 71 l~~~~~~~~~~~-----~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~~p~~~~ 133 (144)
T PLN02325 71 LTVTNNVFLEEP-----KPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLFWPLEKL 133 (144)
T ss_pred EEEecceeecCC-----CCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChhhhHHHHHH
Confidence 666543221111 1122344556665433211 11122236789999999998766555544
No 20
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.86 E-value=1.3e-20 Score=129.95 Aligned_cols=105 Identities=21% Similarity=0.164 Sum_probs=72.0
Q ss_pred EEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEE
Q 031268 48 LVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL 124 (162)
Q Consensus 48 ~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 124 (162)
+|||+++.+ .+.|.||||++++|||+++||.||++||||+.+... ..++.+.+....... ........++|.+
T Consensus 12 ~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 87 (122)
T cd04673 12 RVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVG-RLLTVVDVIERDAAG---RVEFHYVLIDFLC 87 (122)
T ss_pred EEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeec-eeEEEEEEeeccCCC---ccceEEEEEEEEE
Confidence 799999864 356999999999999999999999999999998766 466766544322100 0111223445655
Q ss_pred EecccccCCcccccceeEEeeHhHHhhh-hcccc
Q 031268 125 EVTEELESWPEQANYKRIWVSNNHFLWR-KHSNL 157 (162)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l 157 (162)
....... .+..+..+++|++++++.++ +.+++
T Consensus 88 ~~~~~~~-~~~~E~~~~~w~~~~el~~~~~~~~~ 120 (122)
T cd04673 88 RYLGGEP-VAGDDALDARWVPLDELAALSLTEST 120 (122)
T ss_pred EeCCCcc-cCCcccceeEEECHHHHhhCcCCccc
Confidence 5443222 23345578999999999987 44443
No 21
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.86 E-value=2e-20 Score=130.60 Aligned_cols=115 Identities=23% Similarity=0.188 Sum_probs=77.9
Q ss_pred eeEEEEEEEeccCCcccccccccCceEEEEEEeCCC--CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeE
Q 031268 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR--DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEW 99 (162)
Q Consensus 22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~--~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~ 99 (162)
|.+|++|+++. ++|||+++.+. +.|.+|||++++|||+++||+||++||||+.+... ..+..+
T Consensus 1 r~~a~~iv~~~--------------~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~-~~~~~~ 65 (128)
T cd04687 1 RNSAKAVIIKN--------------DKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIG-PLLFVR 65 (128)
T ss_pred CcEEEEEEEEC--------------CEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccC-cEEEEE
Confidence 56788888863 38999998543 45999999999999999999999999999998765 355555
Q ss_pred EeecccccccCCCCCCceEEEEEEEEeccccc----CCcccccceeEEeeHhHHhhh
Q 031268 100 EFRSKSRMNSCNSKEGGCRGYMFALEVTEELE----SWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~~~~~~~W~~~~ea~~~ 152 (162)
.+...... .......+...++|.+....... ..++.+...++|++++++.++
T Consensus 66 ~~~~~~~~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~ 121 (128)
T cd04687 66 EYIGHNPT-SELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI 121 (128)
T ss_pred EEeccCcc-ccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence 44322100 00011223345677776644221 122333468999999999887
No 22
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=8.6e-21 Score=132.53 Aligned_cols=119 Identities=18% Similarity=0.071 Sum_probs=81.9
Q ss_pred ceeEEEEEEEeccCCcccccccccCceEEEEEEeC---CCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTP---NRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG 97 (162)
Q Consensus 21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~---~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~ 97 (162)
+|.+|++|+++.+ ++|||++|. ..+.|.+|||++++|||+++||.||++||||+++... ..++
T Consensus 1 p~~~v~~ii~~~~-------------~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~-~~~~ 66 (129)
T cd04678 1 PRVGVGVFVLNPK-------------GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENV-QFLT 66 (129)
T ss_pred CceEEEEEEECCC-------------CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccce-EEEE
Confidence 4678889999864 489999987 3577999999999999999999999999999997655 3555
Q ss_pred eEEeecccccccCCCCCCceEEEEEEEEecccccCC---cccccceeEEeeHhHHhhh--hccccccc
Q 031268 98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESW---PEQANYKRIWVSNNHFLWR--KHSNLVGM 160 (162)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~W~~~~ea~~~--~~~~l~~~ 160 (162)
.+...... ........+|.+......... ..++..+++|++++++.++ ....++++
T Consensus 67 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~~~ 127 (129)
T cd04678 67 VTNDVFEE-------EGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSVDPLFLPLKNL 127 (129)
T ss_pred EEeEEeCC-------CCcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCcchhhHHHHHH
Confidence 54322211 111234456666655432211 1223467899999999985 34444444
No 23
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=1.1e-20 Score=129.23 Aligned_cols=99 Identities=24% Similarity=0.224 Sum_probs=71.0
Q ss_pred eEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEEEe
Q 031268 47 VLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEV 126 (162)
Q Consensus 47 ~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 126 (162)
++|||+++.. +.|.||||++++|||+.+||.||++||||+..... ..++.+. .. ....++|.+.+
T Consensus 11 ~~vLlv~r~~-~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~-~~~~~~~--~~-----------~~~~~~f~~~~ 75 (112)
T cd04667 11 GRVLLVRKSG-SRWALPGGKIEPGETPLQAARRELQEETGLQGLDL-LYLFHVD--GG-----------STRHHVFVASV 75 (112)
T ss_pred CEEEEEEcCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccce-EEEEEEe--CC-----------CEEEEEEEEEc
Confidence 3899998864 78999999999999999999999999999986544 3444432 11 11345666665
Q ss_pred cccccCCcccccceeEEeeHhHHhhhhccccccc
Q 031268 127 TEELESWPEQANYKRIWVSNNHFLWRKHSNLVGM 160 (162)
Q Consensus 127 ~~~~~~~~~~~~~~~~W~~~~ea~~~~~~~l~~~ 160 (162)
.......+..+..+++|++++++.++..+...+.
T Consensus 76 ~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~ 109 (112)
T cd04667 76 PPSAQPKPSNEIADCRWLSLDALGDLNASAATRL 109 (112)
T ss_pred CCcCCCCCchheeEEEEecHHHhhhcccchhhhh
Confidence 5432233444557899999999999865554443
No 24
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=2.7e-20 Score=129.58 Aligned_cols=110 Identities=22% Similarity=0.163 Sum_probs=78.8
Q ss_pred eEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEee
Q 031268 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFR 102 (162)
Q Consensus 23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~ 102 (162)
+.|.+|++++ ++|||+++...+.|.||||++++|||+.+||.||++||||+.+... ..++.+...
T Consensus 2 ~~v~~vi~~~--------------~~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~ 66 (126)
T cd04688 2 VRAAAIIIHN--------------GKLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEIT-RLLGVVENI 66 (126)
T ss_pred eEEEEEEEEC--------------CEEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecc-eeeEEEEEe
Confidence 3566777764 2899998877778999999999999999999999999999998766 466665432
Q ss_pred cccccccCCCCCCceEEEEEEEEecccccCC-------cccccceeEEeeHhHHhhh
Q 031268 103 SKSRMNSCNSKEGGCRGYMFALEVTEELESW-------PEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-------~~~~~~~~~W~~~~ea~~~ 152 (162)
..... .......++|.+...+..... ++.+..++.|++++++..+
T Consensus 67 ~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 118 (126)
T cd04688 67 FTYNG-----KPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEI 118 (126)
T ss_pred eccCC-----cccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence 21111 112234677887765543221 2344578999999999865
No 25
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=1.8e-20 Score=130.13 Aligned_cols=113 Identities=11% Similarity=0.024 Sum_probs=77.6
Q ss_pred ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEE
Q 031268 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE 100 (162)
Q Consensus 21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~ 100 (162)
+++.|++++++. ++|||++++..+.|.||||++++|||+.+||+||++||||+.+... ..++.+.
T Consensus 1 p~~~v~~~i~~~--------------~~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~-~~~~~~~ 65 (123)
T cd04672 1 PKVDVRAAIFKD--------------GKILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVR-KLAAVDD 65 (123)
T ss_pred CcceEEEEEEEC--------------CEEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEe-EEEEEec
Confidence 356788888864 3899999988888999999999999999999999999999987544 3455443
Q ss_pred eecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268 101 FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK 153 (162)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~ 153 (162)
....... +........+|.+........ +..+..+++|++++++.++.
T Consensus 66 ~~~~~~~----~~~~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~el~~l~ 113 (123)
T cd04672 66 RNKHHPP----PQPYQVYKLFFLCEILGGEFK-PNIETSEVGFFALDDLPPLS 113 (123)
T ss_pred cccccCC----CCceEEEEEEEEEEecCCccc-CCCceeeeEEECHHHCcccc
Confidence 2211110 001112234566665432222 23445789999999998874
No 26
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=1.5e-20 Score=129.20 Aligned_cols=97 Identities=24% Similarity=0.218 Sum_probs=70.7
Q ss_pred eEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCccccc--CCCCeeeEEeecccccccCCCCCCceEEEEEEE
Q 031268 47 VLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLL--DENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL 124 (162)
Q Consensus 47 ~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 124 (162)
+++||++++..+.|.||||++++|||+++||+||++||||+.+.. . ..++.+.+...... ......++|.+
T Consensus 12 ~~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~f~~ 84 (118)
T cd04690 12 GRVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSL-EYLGTFRAPAANEP------GVDVRATVYVA 84 (118)
T ss_pred CeEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhhe-EEEEEEecccccCC------CcEEEEEEEEE
Confidence 489999998888899999999999999999999999999998765 4 45666554322111 11235567777
Q ss_pred EecccccCCcccccceeEEeeHhHHhhh
Q 031268 125 EVTEELESWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~W~~~~ea~~~ 152 (162)
.... ...+..+..+++|++++++...
T Consensus 85 ~~~~--~~~~~~e~~~~~W~~~~e~~~~ 110 (118)
T cd04690 85 ELTG--EPVPAAEIEEIRWVDYDDPADD 110 (118)
T ss_pred cccC--CcCCCchhhccEEecHHHcccc
Confidence 6554 2223345578999999998654
No 27
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.85 E-value=3.8e-20 Score=130.04 Aligned_cols=99 Identities=23% Similarity=0.282 Sum_probs=71.1
Q ss_pred eEEEEEEeCCC--CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEE
Q 031268 47 VLVLMISTPNR--DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL 124 (162)
Q Consensus 47 ~~vLLv~r~~~--~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 124 (162)
+++||++|.+. +.|.||||++++|||+.+||.||++||||+.+... ..++.+.+..... ...+..++|.+
T Consensus 11 ~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~~~~~~~~~~-------~~~~~~~~f~~ 82 (134)
T cd03675 11 GRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPT-ALLGIYQWTAPDS-------DTTYLRFAFAA 82 (134)
T ss_pred CEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccc-eEEEEEEeecCCC-------CeeEEEEEEEE
Confidence 38999998753 46999999999999999999999999999998655 4566665543221 11223456666
Q ss_pred EecccccC-CcccccceeEEeeHhHHhhhh
Q 031268 125 EVTEELES-WPEQANYKRIWVSNNHFLWRK 153 (162)
Q Consensus 125 ~~~~~~~~-~~~~~~~~~~W~~~~ea~~~~ 153 (162)
.+...... ..+.+..++.|++++++.++.
T Consensus 83 ~~~~~~~~~~~~~e~~~~~w~~~~el~~~~ 112 (134)
T cd03675 83 ELLEHLPDQPLDSGIVRAHWLTLEEILALA 112 (134)
T ss_pred EECCCCCCCCCCCCceeeEEEeHHHHHhhh
Confidence 66543222 223345789999999999875
No 28
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.85 E-value=1.8e-20 Score=131.00 Aligned_cols=122 Identities=18% Similarity=0.093 Sum_probs=81.4
Q ss_pred EEEEEEEeccCCcccccccccCceEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 101 (162)
Q Consensus 24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~ 101 (162)
+|.+++++..+ +++|||++|.. .+.|.+|||++++|||+.+||+||++||||+.+... ..++.+..
T Consensus 3 ~~~v~~~~~~~-----------~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~-~~~~~~~~ 70 (129)
T cd04664 3 SVLVVPYRLTG-----------EGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERL-TLLDRGAS 70 (129)
T ss_pred EEEEEEEEeCC-----------CCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhhe-EEEeeccc
Confidence 46677777632 36999999976 578999999999999999999999999999987443 23333321
Q ss_pred -ecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh-hcccccccc
Q 031268 102 -RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLVGMI 161 (162)
Q Consensus 102 -~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~~~v 161 (162)
...... ........++|.+.+........+.+..+++|++++++.++ ..+++++++
T Consensus 71 ~~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~ 128 (129)
T cd04664 71 IAFVEFT----DNGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLWESNRRAW 128 (129)
T ss_pred ccccccC----CCceEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHcChhhhhhh
Confidence 000000 01122356778777655321223334578999999999987 456665543
No 29
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=3.1e-20 Score=128.75 Aligned_cols=102 Identities=25% Similarity=0.273 Sum_probs=72.1
Q ss_pred EEEEEEEeccCCcccccccccCceEEEEEEeCCC--CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR--DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 101 (162)
Q Consensus 24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~--~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~ 101 (162)
.|++|+++.+ ++|||++|.+. +.|.||||++|+|||+.+||+||++||||+++... ..++.+.+
T Consensus 2 ~~~~ii~~~~-------------~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~-~~~~~~~~ 67 (121)
T cd04669 2 RASIVIINDQ-------------GEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVE-EIFLIVNQ 67 (121)
T ss_pred ceEEEEEeCC-------------CEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeee-eEEEEEee
Confidence 4667777653 48999998643 56999999999999999999999999999998665 45565544
Q ss_pred ecccccccCCCCCCceEEEEEEEEecccccC--C-------cccccceeEEeeHhHHhhh
Q 031268 102 RSKSRMNSCNSKEGGCRGYMFALEVTEELES--W-------PEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--~-------~~~~~~~~~W~~~~ea~~~ 152 (162)
.. ...++|.+........ . .+.+..+++||+++++.++
T Consensus 68 ~~-------------~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 68 NG-------------RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI 114 (121)
T ss_pred CC-------------cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence 11 1345666654321110 0 1222357899999999886
No 30
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=2.9e-20 Score=128.94 Aligned_cols=124 Identities=16% Similarity=0.115 Sum_probs=79.8
Q ss_pred eeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 101 (162)
Q Consensus 22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~ 101 (162)
+..|++|+++.+ ++|||++|...+.|.||||++++|||+++||+||++||||+.+... ..++.+..
T Consensus 2 ~~~v~~ii~~~~-------------~~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~-~~~~~~~~ 67 (129)
T cd04676 2 LPGVTAVVRDDE-------------GRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVT-GLVGIYTG 67 (129)
T ss_pred cceEEEEEECCC-------------CeEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEee-EEEEEeec
Confidence 456777777643 4899999987788999999999999999999999999999987654 34443322
Q ss_pred ecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh-hccccccc
Q 031268 102 RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLVGM 160 (162)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~~~ 160 (162)
........ .+........+|.+.........+..+..+++|++++++.++ +.+..+.+
T Consensus 68 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~ 126 (129)
T cd04676 68 PVHVVTYP-NGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPLLMHPSMRLR 126 (129)
T ss_pred ccceeecC-CCCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccccCCHhHHHH
Confidence 11100000 000011233445554433222123344578999999999986 55555544
No 31
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=3e-20 Score=129.52 Aligned_cols=108 Identities=17% Similarity=0.225 Sum_probs=72.2
Q ss_pred eeEEEEEEEeccCCcccccccccCceEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeE
Q 031268 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEW 99 (162)
Q Consensus 22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~ 99 (162)
+..|++++++.+ ++|||++++. .+.|.||||++++|||+++||+||++||||+.+... ..++.+
T Consensus 2 ~~~~~~~v~~~~-------------~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~-~~~~~~ 67 (127)
T cd04670 2 TVGVGGLVLNEK-------------NEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFV-SVVGFR 67 (127)
T ss_pred eeEEEEEEEcCC-------------CeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCccee-EEEEEE
Confidence 356777888654 4899999877 678999999999999999999999999999987655 334333
Q ss_pred EeecccccccCCCCCCceEEEEEEEEecccc--cCCcccccceeEEeeHhHHhhh
Q 031268 100 EFRSKSRMNSCNSKEGGCRGYMFALEVTEEL--ESWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~W~~~~ea~~~ 152 (162)
.+..... .....+|.+.+.... ....+++..+++|++++++.+.
T Consensus 68 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 113 (127)
T cd04670 68 HAHPGAF---------GKSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQ 113 (127)
T ss_pred ecCCCCc---------CceeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcc
Confidence 2211110 012233444332211 1122334568999999999865
No 32
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=6.1e-20 Score=129.00 Aligned_cols=113 Identities=24% Similarity=0.299 Sum_probs=75.2
Q ss_pred EEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCccc-ccCCCCeeeEEee
Q 031268 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRG-LLDENPLGEWEFR 102 (162)
Q Consensus 24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~-~~~~~~l~~~~~~ 102 (162)
+|++|+++. ++|||+++.+.+.|.||||++|+|||+.+||+||++||||+.+ ... ..++.+...
T Consensus 2 ~~~~ii~~~--------------~~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~-~~l~~~~~~ 66 (131)
T cd04686 2 AVRAIILQG--------------DKILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVI-EKFGTYTER 66 (131)
T ss_pred cEEEEEEEC--------------CEEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccc-eEEEEEEee
Confidence 577888874 3899999987778999999999999999999999999999986 334 456665421
Q ss_pred cccccccCCCCCCceEEEEEEEEeccccc--CCcccc---cceeEEeeHhHHhhhh
Q 031268 103 SKSRMNSCNSKEGGCRGYMFALEVTEELE--SWPEQA---NYKRIWVSNNHFLWRK 153 (162)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~---~~~~~W~~~~ea~~~~ 153 (162)
...... .........++|.+....... ...+.+ ...++|++++++.+..
T Consensus 67 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~~ 120 (131)
T cd04686 67 RPWRKP--DADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEHN 120 (131)
T ss_pred ccccCC--CCceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHhh
Confidence 111000 001112245677776654321 111111 1358999999998753
No 33
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.84 E-value=5.3e-20 Score=129.02 Aligned_cols=115 Identities=17% Similarity=0.190 Sum_probs=82.0
Q ss_pred cCceeEEEEEEEeccCCcccccccccCceEEEEEEeC---CCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCC
Q 031268 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTP---NRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENP 95 (162)
Q Consensus 19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~---~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~ 95 (162)
..++.+|++|+++. ++|||++|. ..+.|.||||++|+|||+++||+||++||||+++... ..
T Consensus 10 ~~~~~~v~~ii~~~--------------~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~-~~ 74 (130)
T cd04511 10 QNPKIIVGCVPEWE--------------GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEID-GL 74 (130)
T ss_pred CCCcEEEEEEEecC--------------CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEee-eE
Confidence 45567788887754 389999985 3467999999999999999999999999999998655 45
Q ss_pred eeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHh--hhhccccccc
Q 031268 96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFL--WRKHSNLVGM 160 (162)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~--~~~~~~l~~~ 160 (162)
++.+..... ....++|.+...... ..+..+..+.+|++++++. ++..+.+++.
T Consensus 75 ~~~~~~~~~-----------~~~~~~f~~~~~~~~-~~~~~e~~~~~~~~~~~l~~~~l~~~~~~~~ 129 (130)
T cd04511 75 YAVYSVPHI-----------SQVYMFYRARLLDLD-FAPGPESLEVRLFTEEEIPWDELAFPTVRRT 129 (130)
T ss_pred EEEEecCCc-----------eEEEEEEEEEEcCCc-ccCCcchhceEEECHHHCCchhccccccccc
Confidence 555543211 124567777765432 2233345788999999996 4555655543
No 34
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.83 E-value=6e-20 Score=129.51 Aligned_cols=110 Identities=21% Similarity=0.105 Sum_probs=77.3
Q ss_pred eEEEEEEEeccCCcccccccccCceEEEEEEeCC----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeee
Q 031268 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE 98 (162)
Q Consensus 23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~ 98 (162)
.+|++++++.+ +++||+++.+ .+.|.+|||++|+|||+.+||+||++||||+.+... ..++.
T Consensus 3 ~~v~v~~~~~~-------------~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~-~~~~~ 68 (137)
T cd03424 3 DAVAVLPYDDD-------------GKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDL-EKLGS 68 (137)
T ss_pred CEEEEEEEcCC-------------CeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccce-EEEee
Confidence 35777777764 4899998753 246999999999999999999999999999998644 35555
Q ss_pred EEeecccccccCCCCCCceEEEEEEEEecccc--cCCcccccceeEEeeHhHHhhhhcc
Q 031268 99 WEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL--ESWPEQANYKRIWVSNNHFLWRKHS 155 (162)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~W~~~~ea~~~~~~ 155 (162)
+.+.... .....++|.+...... ....+.+..+++|++++|+.+++..
T Consensus 69 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 118 (137)
T cd03424 69 FYPSPGF---------SDERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLAD 118 (137)
T ss_pred EecCCcc---------cCccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHc
Confidence 4332111 1124556666655432 1233445688999999999988654
No 35
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.83 E-value=3.9e-20 Score=128.95 Aligned_cols=114 Identities=26% Similarity=0.261 Sum_probs=81.8
Q ss_pred ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCC
Q 031268 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENP 95 (162)
Q Consensus 21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~ 95 (162)
+|.+|++|+++.+ ++|||+++.+. +.|.+|||++++|||+.+||+||++||||+.+... ..
T Consensus 1 ~~~~v~~ii~~~~-------------~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~-~~ 66 (134)
T PF00293_consen 1 WRRAVGVIIFNED-------------GKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPL-EL 66 (134)
T ss_dssp EEEEEEEEEEETT-------------TEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEE-EE
T ss_pred CCCEEEEEEEeCC-------------cEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceeccc-cc
Confidence 4789999999876 29999999865 56999999999999999999999999999997544 34
Q ss_pred eeeEEeecccccccCCCCCCceEEEEEEEEecccc--cCCcccccceeEEeeHhHHhhhhc
Q 031268 96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL--ESWPEQANYKRIWVSNNHFLWRKH 154 (162)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~W~~~~ea~~~~~ 154 (162)
++.+.+....... .....++|.+...... ......+...++|++++++.++..
T Consensus 67 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~ 121 (134)
T PF00293_consen 67 LGLFSYPSPSGDP------EGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLL 121 (134)
T ss_dssp EEEEEEEETTTES------SEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHH
T ss_pred ceeeeecccCCCc------ccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchh
Confidence 5555544432210 1134555555544332 122222568999999999998743
No 36
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.83 E-value=3.5e-20 Score=132.49 Aligned_cols=112 Identities=21% Similarity=0.211 Sum_probs=79.8
Q ss_pred cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC---CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCC
Q 031268 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR---DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENP 95 (162)
Q Consensus 19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~ 95 (162)
..+...|++++.+.+ +|||++|... +.|.||||++|.|||+++||.||++||||+++... .+
T Consensus 7 ~~p~~~v~~~i~~~~--------------~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~-~~ 71 (145)
T COG1051 7 RTPLVAVGALIVRNG--------------RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVL-EL 71 (145)
T ss_pred CCcceeeeEEEEeCC--------------EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccce-eE
Confidence 345678888888753 8999999764 67999999999999999999999999999997776 57
Q ss_pred eeeEEeecccccccCCCCCCceEEEEEEEEe-cccccCCcccccceeEEeeHhHHhhh
Q 031268 96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEV-TEELESWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~W~~~~ea~~~ 152 (162)
++.|+...... ..++..++|.+.. .+............+.||+++++..+
T Consensus 72 ~~v~~~~~rd~-------r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~ 122 (145)
T COG1051 72 LAVFDDPGRDP-------RGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPEL 122 (145)
T ss_pred EEEecCCCCCC-------ceeEEEEEEEEEecCCCcccCChhhHhhcceecHhHcccc
Confidence 77777655431 1122333333333 33222222223478999999999864
No 37
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1e-19 Score=126.15 Aligned_cols=96 Identities=20% Similarity=0.107 Sum_probs=67.1
Q ss_pred eEEEEEEeCCC------CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEE
Q 031268 47 VLVLMISTPNR------DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGY 120 (162)
Q Consensus 47 ~~vLLv~r~~~------~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (162)
++|||++|... +.|.||||+++.|||+++||+||++||||+.+.... ......+.... .....+
T Consensus 12 g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~-~~~~~~~~~~~---------~~~~~~ 81 (122)
T cd04682 12 GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESR-IPWFRVYPSAS---------PPGTEH 81 (122)
T ss_pred CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccc-cceeEecccCC---------CCceEE
Confidence 48999998643 679999999999999999999999999999875431 21222222211 112566
Q ss_pred EEEEEecccc-cCCcccccceeEEeeHhHHhhh
Q 031268 121 MFALEVTEEL-ESWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 121 ~f~~~~~~~~-~~~~~~~~~~~~W~~~~ea~~~ 152 (162)
+|.+...... .....++..+++|++++|+...
T Consensus 82 ~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 114 (122)
T cd04682 82 VFVVPLTAREDAILFGDEGQALRLMTVEEFLAH 114 (122)
T ss_pred EEEEEEecCCCccccCchhheeecccHHHHhhc
Confidence 7776655432 2334445678999999999875
No 38
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=8e-20 Score=125.98 Aligned_cols=93 Identities=23% Similarity=0.188 Sum_probs=66.0
Q ss_pred EEEEEEeCC-----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268 48 LVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (162)
Q Consensus 48 ~vLLv~r~~-----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (162)
+|||++|.. .+.|+||||++|+|||+++||+||++||||+++... ..++.+.+... .....++|
T Consensus 12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~-~~l~~~~~~~~----------~~~~~~~~ 80 (117)
T cd04691 12 KVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSY-TYLCSLYHPTS----------ELQLLHYY 80 (117)
T ss_pred EEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccc-eEEEEEeccCC----------CeEEEEEE
Confidence 899999853 357999999999999999999999999999986434 34554433221 11245666
Q ss_pred EEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268 123 ALEVTEELESWPEQANYKRIWVSNNHFLWRK 153 (162)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~ 153 (162)
.+....... ...+..+++|++++++..+.
T Consensus 81 ~~~~~~~~~--~~~E~~~~~W~~~~~l~~~~ 109 (117)
T cd04691 81 VVTFWQGEI--PAQEAAEVHWMTANDIVLAS 109 (117)
T ss_pred EEEEecCCC--CcccccccEEcCHHHcchhh
Confidence 665433211 22445789999999998763
No 39
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1e-19 Score=125.47 Aligned_cols=101 Identities=20% Similarity=0.165 Sum_probs=67.6
Q ss_pred eEEEEEEeCC----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC-CCeeeEEeecccccccCCCCCCceEEEE
Q 031268 47 VLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-NPLGEWEFRSKSRMNSCNSKEGGCRGYM 121 (162)
Q Consensus 47 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (162)
++|||++|.. .+.|.||||++++|||+++||+||++||||+.+.... ..++.+.+.... ......++
T Consensus 11 ~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~--------~~~~~~~~ 82 (120)
T cd04683 11 DEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTED--------IESRIGLF 82 (120)
T ss_pred CEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCC--------CceEEEEE
Confidence 3899999864 3579999999999999999999999999999875321 244544332221 01223455
Q ss_pred EEEEeccccc-CCcccccceeEEeeHhHHhhhhcc
Q 031268 122 FALEVTEELE-SWPEQANYKRIWVSNNHFLWRKHS 155 (162)
Q Consensus 122 f~~~~~~~~~-~~~~~~~~~~~W~~~~ea~~~~~~ 155 (162)
|.+....... ....++..+++|++++++...+.+
T Consensus 83 f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~ 117 (120)
T cd04683 83 FTVRRWSGEPRNCEPDKCAELRWFPLDALPDDTVD 117 (120)
T ss_pred EEEEeecCccccCCCCcEeeEEEEchHHCcchhcc
Confidence 6665432211 222234578999999999876544
No 40
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=5e-20 Score=128.71 Aligned_cols=108 Identities=18% Similarity=0.126 Sum_probs=71.8
Q ss_pred EEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEE
Q 031268 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE 100 (162)
Q Consensus 24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~ 100 (162)
+|++++++.+ ++|||++|.. .+.|.+|||++++|||+.+||.||++||||+++... ..++.+.
T Consensus 3 av~~~i~~~~-------------~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~-~~~~~~~ 68 (130)
T cd04681 3 AVGVLILNED-------------GELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTEL-SYLFSLP 68 (130)
T ss_pred eEEEEEEcCC-------------CcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccce-eEEEeec
Confidence 4666776643 4899999854 367999999999999999999999999999987655 3555443
Q ss_pred eecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHh
Q 031268 101 FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFL 150 (162)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~ 150 (162)
....... .......++|.+.+.........++...++|++++++.
T Consensus 69 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 69 NTYPYGG-----MEYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred ceeeeCC-----ceeEEEEEEEEEEeCCCCCcCChHHhheeEEecHHHCC
Confidence 2211110 01111224566665543222233345789999999984
No 41
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.83 E-value=1.4e-19 Score=127.47 Aligned_cols=104 Identities=20% Similarity=0.102 Sum_probs=73.4
Q ss_pred eEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEE
Q 031268 47 VLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFA 123 (162)
Q Consensus 47 ~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~ 123 (162)
++|||++|.. .+.|.+|||++++|||+.+||+||++||||+.+... ..++.+.+..... ......++|.
T Consensus 12 ~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~~~~-------~~~~~~~~f~ 83 (137)
T cd03427 12 DKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNL-KLVGIIKFPFPGE-------EERYGVFVFL 83 (137)
T ss_pred CEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecc-eEEEEEEEEcCCC-------CcEEEEEEEE
Confidence 3899999876 467999999999999999999999999999998766 5677776554321 1123456666
Q ss_pred EEecccccCCcccccceeEEeeHhHHhhh-hcccccc
Q 031268 124 LEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLVG 159 (162)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~~ 159 (162)
+........ .+.+...++|++++++..+ +.++.+.
T Consensus 84 ~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~~~~ 119 (137)
T cd03427 84 ATEFEGEPL-KESEEGILDWFDIDDLPLLPMWPGDRE 119 (137)
T ss_pred ECCcccccC-CCCccccceEEcHhhcccccCCCCcHH
Confidence 654332222 2333467899999999875 4444433
No 42
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.82 E-value=1.3e-19 Score=131.09 Aligned_cols=127 Identities=24% Similarity=0.177 Sum_probs=83.5
Q ss_pred cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG 97 (162)
Q Consensus 19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~ 97 (162)
..+|.+|++++++.+ ++|||+++... +.|.+|||++++|||+++||.||++||||+.+... ..++
T Consensus 5 ~~~~~~v~~~i~~~~-------------g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~-~~~~ 70 (156)
T PRK00714 5 DGYRPNVGIILLNRQ-------------GQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDV-EILA 70 (156)
T ss_pred CCCCCeEEEEEEecC-------------CEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccce-EEEE
Confidence 357889999999865 48999999654 67999999999999999999999999999987544 3344
Q ss_pred eE----Eeecccc--cccCCCCCCceEEEEEEEEeccc-c--c--CCcccccceeEEeeHhHHhhhhccccccc
Q 031268 98 EW----EFRSKSR--MNSCNSKEGGCRGYMFALEVTEE-L--E--SWPEQANYKRIWVSNNHFLWRKHSNLVGM 160 (162)
Q Consensus 98 ~~----~~~~~~~--~~~~~~~~~~~~~~~f~~~~~~~-~--~--~~~~~~~~~~~W~~~~ea~~~~~~~l~~~ 160 (162)
.+ .|..... ....+. ......++|.+..... . . ..++.+..+++|++++|+.+++.+..+.+
T Consensus 71 ~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~~~r~~ 143 (156)
T PRK00714 71 ETRDWLRYDLPKRLVRRSKGV-YRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVPFKRDV 143 (156)
T ss_pred EcCCeEEecCcHHHhhccCCc-ccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchhhhHHH
Confidence 32 2221110 000000 0111345677665321 1 1 11234567999999999998765544443
No 43
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.2e-19 Score=126.26 Aligned_cols=104 Identities=22% Similarity=0.263 Sum_probs=72.6
Q ss_pred EEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEE
Q 031268 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE 100 (162)
Q Consensus 24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~ 100 (162)
++++|+++.+ ++|||+++.+ .+.|.||||++|+|||+++||+||++||||+++... ..++...
T Consensus 2 ~~~~vv~~~~-------------~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~-~~~~~~~ 67 (123)
T cd04671 2 IVAAVILNNQ-------------GEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPT-TLLSVEE 67 (123)
T ss_pred EEEEEEEcCC-------------CEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecc-eEEEEEc
Confidence 5777777654 4899999854 357999999999999999999999999999998765 3454332
Q ss_pred eecccccccCCCCCCceEEEEEEEEecccc-cC--CcccccceeEEeeHhHHhhhh
Q 031268 101 FRSKSRMNSCNSKEGGCRGYMFALEVTEEL-ES--WPEQANYKRIWVSNNHFLWRK 153 (162)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~--~~~~~~~~~~W~~~~ea~~~~ 153 (162)
. .. ....++|.+...+.. .. .++.+..+++|++++++...+
T Consensus 68 ~-~~-----------~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~~ 111 (123)
T cd04671 68 Q-GG-----------SWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLPLPL 111 (123)
T ss_pred c-CC-----------eEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCCcc
Confidence 1 10 123556766654321 11 122334689999999995444
No 44
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.82 E-value=1.2e-19 Score=131.36 Aligned_cols=110 Identities=18% Similarity=0.048 Sum_probs=73.8
Q ss_pred eEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeCCCccCCC-CCHHHHHHHHHHHHhCcccccCCCCe
Q 031268 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDD-ETVSEAACREALEEAGVRGLLDENPL 96 (162)
Q Consensus 23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~g-Et~~eaa~REl~EEtGl~~~~~~~~l 96 (162)
.++..|++...+ +.++|||++|.. .+.|.||||++|+| ||+++||+||++||||+.+... ..+
T Consensus 2 ~~av~v~l~~~~----------~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~-~~l 70 (157)
T cd03426 2 RAAVLVLLVERE----------GELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSV-EVL 70 (157)
T ss_pred ceEEEEEEEeCC----------CceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccce-EEE
Confidence 345556665443 357999999864 36799999999999 9999999999999999987655 355
Q ss_pred eeEEeecccccccCCCCCCceEEEEEEEEeccc-ccCCcccccceeEEeeHhHHhhh
Q 031268 97 GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE-LESWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~W~~~~ea~~~ 152 (162)
+.+....... ...+++|.+.+... .......+..+++|++++++.+.
T Consensus 71 ~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 71 GRLPPYYTRS---------GFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred EECCCccccC---------CCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence 5443211111 12344555544432 11222234578999999999986
No 45
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.81 E-value=1.8e-19 Score=126.83 Aligned_cols=111 Identities=17% Similarity=0.285 Sum_probs=73.9
Q ss_pred ceEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccC---CCCeeeEEeecccccccCCCCCCceEEE
Q 031268 46 KVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLD---ENPLGEWEFRSKSRMNSCNSKEGGCRGY 120 (162)
Q Consensus 46 ~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (162)
..++||+++.. .+.|.||||++|+|||+.+||+||++||||+.+... ...++.+.+....... .........+
T Consensus 12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 89 (132)
T cd04661 12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVR--NEGIVGAKVF 89 (132)
T ss_pred CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccc--cccCcccEEE
Confidence 46899999864 367999999999999999999999999999976532 0123333332211100 0011123577
Q ss_pred EEEEEecccccCCcccccceeEEeeHhHHhhhhcccccc
Q 031268 121 MFALEVTEELESWPEQANYKRIWVSNNHFLWRKHSNLVG 159 (162)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~~l~~ 159 (162)
+|.+...+.... +..++.+++|++++|+.+++.++..+
T Consensus 90 ~f~~~~~~g~~~-~~~e~~~~~W~~~~el~~~l~~~~~~ 127 (132)
T cd04661 90 FFKARYMSGQFE-LSQNQVDFKWLAKEELQKYLNPPYLQ 127 (132)
T ss_pred EEEEEEecCccc-cCCCcceeEecCHHHHHhhcCHHHHH
Confidence 888776543222 23446899999999999987665543
No 46
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.81 E-value=1.7e-19 Score=126.78 Aligned_cols=94 Identities=19% Similarity=0.131 Sum_probs=67.5
Q ss_pred eEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEE
Q 031268 47 VLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL 124 (162)
Q Consensus 47 ~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 124 (162)
++|||++|+. .+.|.+|||++++|||+++||+||++||||+.+... ..++.+.+... .....+|.+
T Consensus 12 ~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~-~~l~~~~~~~~-----------~~~~~~f~~ 79 (131)
T cd03429 12 DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNI-RYVGSQPWPFP-----------SSLMLGFTA 79 (131)
T ss_pred CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeee-EEEeecCCCCC-----------ceEEEEEEE
Confidence 5899999875 467999999999999999999999999999997655 34554332211 123455666
Q ss_pred EecccccCCcccccceeEEeeHhHHhhh
Q 031268 125 EVTEELESWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~W~~~~ea~~~ 152 (162)
..........+++..+++|++++++.++
T Consensus 80 ~~~~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 80 EADSGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEcCCcccCCchhhhccEeecHHHHhhc
Confidence 6553222222334578999999998875
No 47
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.81 E-value=2e-19 Score=127.62 Aligned_cols=103 Identities=20% Similarity=0.296 Sum_probs=61.7
Q ss_pred eEEEEEEeCCC-----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccC-CCCC-CceEE
Q 031268 47 VLVLMISTPNR-----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSC-NSKE-GGCRG 119 (162)
Q Consensus 47 ~~vLLv~r~~~-----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~-~~~~-~~~~~ 119 (162)
++|||++|... +.|.+|||++|+|||+++||+||++||||+.+... .+..+.+........+ .+.. ..+.+
T Consensus 15 ~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T PRK15472 15 GAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLT--EITPWTFRDDIRTKTYADGRKEEIYMI 92 (141)
T ss_pred CEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeee--eeccccccccceeEEecCCCceeEEEE
Confidence 48999998542 67999999999999999999999999999986433 1221111100000000 0000 01111
Q ss_pred -EEEEEEecccccCCcccccceeEEeeHhHHhhh
Q 031268 120 -YMFALEVTEELESWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 120 -~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~ 152 (162)
.+|.+..... ...+.++..+++|++++|+.++
T Consensus 93 ~~~~~~~~~~~-~~~~~~E~~~~~w~~~~el~~l 125 (141)
T PRK15472 93 YLIFDCVSANR-DVKINEEFQDYAWVKPEDLVHY 125 (141)
T ss_pred EEEEEeecCCC-cccCChhhheEEEccHHHhccc
Confidence 2233332221 1123345579999999999987
No 48
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=4.2e-19 Score=123.85 Aligned_cols=107 Identities=21% Similarity=0.201 Sum_probs=75.5
Q ss_pred EEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeee-CCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVF-PKGGWEDDETVSEAACREALEEAGVRGLLDENPLG 97 (162)
Q Consensus 24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~ 97 (162)
++.+++++.+ ++|||++|.. .+.|++ |||++++|||+++||+||++||||+.+... ..++
T Consensus 2 ~~~v~i~~~~-------------~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l-~~~~ 67 (126)
T cd04697 2 ATYIFVFNSE-------------GKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQL-TPLG 67 (126)
T ss_pred eEEEEEEcCC-------------CeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCcccc-EEee
Confidence 4667777654 4899988753 256998 699999999999999999999999997644 4566
Q ss_pred eEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhc
Q 031268 98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKH 154 (162)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~ 154 (162)
.|.+..... ....++|.+...... ...+++..+++|++++++.+++.
T Consensus 68 ~~~~~~~~~---------~~~~~~f~~~~~~~~-~~~~~E~~~~~w~~~~el~~~~~ 114 (126)
T cd04697 68 LFYYDTDGN---------RVWGKVFSCVYDGPL-KLQEEEVEEITWLSINEILQFKE 114 (126)
T ss_pred EEEecCCCc---------eEEEEEEEEEECCCC-CCCHhHhhheEEcCHHHHHHHhh
Confidence 665543211 123456666554322 22233457899999999998754
No 49
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.81 E-value=6.1e-19 Score=128.53 Aligned_cols=119 Identities=15% Similarity=0.035 Sum_probs=80.0
Q ss_pred cCc-eeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-----CCeeeC-CCccCCCCCHHHHHHHHHHHHhCccccc
Q 031268 19 DQL-RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFP-KGGWEDDETVSEAACREALEEAGVRGLL 91 (162)
Q Consensus 19 ~~~-r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-gG~ve~gEt~~eaa~REl~EEtGl~~~~ 91 (162)
+.. +.+|++++++.+ ++|||++|... +.|.+| ||++++|||+++||+||++||||+.+..
T Consensus 26 ~~~~~~~v~v~i~~~~-------------~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~ 92 (165)
T cd02885 26 GTLLHRAFSVFLFNSK-------------GRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDL 92 (165)
T ss_pred CCcceeEEEEEEEcCC-------------CcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccc
Confidence 444 778877777654 48999988642 558886 8999999999999999999999999765
Q ss_pred CCCCe-eeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhccc
Q 031268 92 DENPL-GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHSN 156 (162)
Q Consensus 92 ~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~~ 156 (162)
. ..+ +.+.|....... .......++|.+....... ...++..+++|++++++.+++.++
T Consensus 93 ~-~~~~~~~~~~~~~~~~----~~~~~i~~~f~~~~~~~~~-~~~~Ev~~~~w~~~~el~~~~~~~ 152 (165)
T cd02885 93 L-ELVLPRFRYRAPDDGG----LVEHEIDHVFFARADVTLI-PNPDEVSEYRWVSLEDLKELVAAA 152 (165)
T ss_pred h-hhccceEEEEEEcCCC----ceeeEEEEEEEEEeCCCCC-CCccceeEEEEECHHHHHHHHHhC
Confidence 5 343 555544321110 0011134566665543322 233345789999999999987654
No 50
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=9e-19 Score=124.82 Aligned_cols=120 Identities=16% Similarity=0.077 Sum_probs=78.7
Q ss_pred ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-----CCeee-CCCccCCCCCHHHHHHHHHHHHhCcccccCC-
Q 031268 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVF-PKGGWEDDETVSEAACREALEEAGVRGLLDE- 93 (162)
Q Consensus 21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~l-PgG~ve~gEt~~eaa~REl~EEtGl~~~~~~- 93 (162)
++.+|-+++++.++ ++++|||.+|... +.|.+ |||++++|||+++||+||++||||+.+....
T Consensus 1 ~h~~v~~~v~~~~~----------~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l 70 (144)
T cd04692 1 WHRTFHCWIITKDE----------GKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDL 70 (144)
T ss_pred CceEEEEEEEEccC----------CCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHe
Confidence 35677788888653 3578999988642 56998 5999999999999999999999999864321
Q ss_pred CCeeeEEeecccccccCCCCCCceEEEEEEEEeccc--ccCCcccccceeEEeeHhHHhhhhc
Q 031268 94 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE--LESWPEQANYKRIWVSNNHFLWRKH 154 (162)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~~~~~~W~~~~ea~~~~~ 154 (162)
..++.+.+....... .......++|.+..... .....+.+..+++|++++++.+++.
T Consensus 71 ~~~~~~~~~~~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 129 (144)
T cd04692 71 IPLGTFKIEYDHIGK----LIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLE 129 (144)
T ss_pred EEeeEEEEeccccCC----CccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHH
Confidence 245555543321100 01112345666654331 1122334557899999999998864
No 51
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=6.1e-19 Score=122.95 Aligned_cols=108 Identities=20% Similarity=0.129 Sum_probs=71.1
Q ss_pred EEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeC-CCccCCCCCHHHHHHHHHHHHhCcccccCC-CCe
Q 031268 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFP-KGGWEDDETVSEAACREALEEAGVRGLLDE-NPL 96 (162)
Q Consensus 24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~gEt~~eaa~REl~EEtGl~~~~~~-~~l 96 (162)
+|.+++++.+ ++|||++|.. .+.|.+| ||++++|||+ +||+||++||||+.+.... ..+
T Consensus 2 ~v~v~~~~~~-------------g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~ 67 (127)
T cd04693 2 VVHVCIFNSK-------------GELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPL 67 (127)
T ss_pred eEEEEEEeCC-------------CeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEE
Confidence 4566666543 4899998863 2579998 9999999999 9999999999999976431 134
Q ss_pred eeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhcc
Q 031268 97 GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHS 155 (162)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~ 155 (162)
+.+.+... ....+++|.+...........++..+++|++++++.+++.+
T Consensus 68 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 116 (127)
T cd04693 68 FRYFFEAE----------GFDDYYLFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIGH 116 (127)
T ss_pred EEEEeecC----------CeEEEEEEEecCcccccccCHHHhhhEEEeCHHHHHHHHhc
Confidence 44433321 11233444433322212223334578999999999998644
No 52
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.80 E-value=6e-19 Score=122.62 Aligned_cols=58 Identities=31% Similarity=0.430 Sum_probs=50.2
Q ss_pred eEEEEEEEeccCCcccccccccCceEEEEEEe-------CCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccc
Q 031268 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMIST-------PNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL 90 (162)
Q Consensus 23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r-------~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~ 90 (162)
+++|+|+|+.+. +..+|||+++ +..+.|+||||+++.|||+++||+||++||||+.+.
T Consensus 1 ~~~g~v~~~~~~----------~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 1 LSAGILLYRFRD----------GRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred CeEEEEEEEEcC----------CcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 368999998764 4689999985 344679999999999999999999999999999865
No 53
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.78 E-value=4.1e-18 Score=119.73 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=68.0
Q ss_pred eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268 47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (162)
Q Consensus 47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (162)
++|||++|... +.|+||||++++|||+.+||+||++||||+.+... ..++.+.+..... ....++|
T Consensus 15 ~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~-~~~~~~~~~~~~~---------~~~~~~~ 84 (135)
T PRK10546 15 GKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVG-EYVASHQREVSGR---------RIHLHAW 84 (135)
T ss_pred CEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccc-eeEEEEEEecCCc---------EEEEEEE
Confidence 48999988643 67999999999999999999999999999997655 3455554433211 1234555
Q ss_pred EEEecccccCCcccccceeEEeeHhHHhhh-hccccc
Q 031268 123 ALEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLV 158 (162)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~ 158 (162)
.+..... .....+...++|++++++.++ +.+..+
T Consensus 85 ~~~~~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~~ 119 (135)
T PRK10546 85 HVPDFHG--ELQAHEHQALVWCTPEEALRYPLAPADI 119 (135)
T ss_pred EEEEecC--cccccccceeEEcCHHHcccCCCCcCcH
Confidence 5543221 111223467899999999876 344433
No 54
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.78 E-value=3.5e-18 Score=126.71 Aligned_cols=120 Identities=19% Similarity=0.173 Sum_probs=78.0
Q ss_pred cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-----CCeeeC-CCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFP-KGGWEDDETVSEAACREALEEAGVRGLLD 92 (162)
Q Consensus 19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-gG~ve~gEt~~eaa~REl~EEtGl~~~~~ 92 (162)
+.++.++++++++.+ ++|||++|... +.|.+| ||++++|||+++||+||++||||+++...
T Consensus 31 ~~~h~av~v~i~~~~-------------g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~ 97 (184)
T PRK03759 31 TPLHLAFSCYLFDAD-------------GRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDL 97 (184)
T ss_pred CCeeeEEEEEEEcCC-------------CeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcccc
Confidence 456777777777654 48999987431 346665 79999999999999999999999987533
Q ss_pred CCCeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhccc
Q 031268 93 ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHSN 156 (162)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~~ 156 (162)
...++.+.|....... .......++|.+...+.. ....++..+++|++++++.+++.++
T Consensus 98 ~~~~~~~~~~~~~~~~----~~~~~~~~vf~~~~~~~~-~~~~~Ev~~~~W~~~~el~~~i~~~ 156 (184)
T PRK03759 98 ELVLPDFRYRATDPNG----IVENEVCPVFAARVTSAL-QPNPDEVMDYQWVDPADLLRAVDAT 156 (184)
T ss_pred ccccceEEEEEecCCC----ceeeEEEEEEEEEECCCC-CCChhHeeeEEEECHHHHHHHHHhC
Confidence 2344555443221110 011123456776655322 2222345789999999999886543
No 55
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=5e-18 Score=117.98 Aligned_cols=100 Identities=19% Similarity=0.130 Sum_probs=64.8
Q ss_pred eEEEEEEeCC-----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEE
Q 031268 47 VLVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYM 121 (162)
Q Consensus 47 ~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (162)
++|||++|.. .+.|.||||++++|||+.+||+||++||||+.+... ..++...+..... ......++
T Consensus 13 ~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~-~~~~~~~~~~~~~-------~~~~~~~~ 84 (129)
T cd04699 13 GRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPF-LRYPSTVTHEDSG-------VYNVIYLV 84 (129)
T ss_pred CcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEee-eeeeEEEEEcCCC-------EEEEEEEE
Confidence 4899998864 356999999999999999999999999999987655 2332222211110 00123344
Q ss_pred EEEEecccccCCcccccceeEEeeHhHHhhhhcc
Q 031268 122 FALEVTEELESWPEQANYKRIWVSNNHFLWRKHS 155 (162)
Q Consensus 122 f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~ 155 (162)
|.+...... .....+..+++|++++++..+..+
T Consensus 85 ~~~~~~~~~-~~~~~e~~~~~w~~~~el~~~~~~ 117 (129)
T cd04699 85 FVCEALSGA-VKLSDEHEEYAWVTLEELAILKAD 117 (129)
T ss_pred EEeeecCCc-ccCChhheEEEEecHHHhhhhhcc
Confidence 554333221 112234568899999998766544
No 56
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.77 E-value=7.4e-18 Score=125.04 Aligned_cols=99 Identities=21% Similarity=0.064 Sum_probs=69.6
Q ss_pred eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268 47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (162)
Q Consensus 47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (162)
++|||+++... ..|+||||.+|+|||+++||+||++||||+.+... ..++.+....... ....++|
T Consensus 59 ~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l-~~l~~~~~~~~~~---------~~~~~~f 128 (185)
T PRK11762 59 DTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQL-TFLKELSLAPSYF---------SSKMNIV 128 (185)
T ss_pred CEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcce-EEEEEEecCCCcc---------CcEEEEE
Confidence 48999998532 34999999999999999999999999999998766 5677654332211 1245666
Q ss_pred EEEeccccc-CCcccccceeEEeeHhHHhhhhcc
Q 031268 123 ALEVTEELE-SWPEQANYKRIWVSNNHFLWRKHS 155 (162)
Q Consensus 123 ~~~~~~~~~-~~~~~~~~~~~W~~~~ea~~~~~~ 155 (162)
.+....... ...+.+..+..|++++++.+++.+
T Consensus 129 ~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~ 162 (185)
T PRK11762 129 LAEDLYPERLEGDEPEPLEVVRWPLADLDELLAR 162 (185)
T ss_pred EEEccccccCCCCCCceeEEEEEcHHHHHHHHHc
Confidence 655332211 112333467899999999988654
No 57
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.77 E-value=7e-18 Score=124.68 Aligned_cols=96 Identities=21% Similarity=0.256 Sum_probs=65.2
Q ss_pred eEEEEEEeCCC-----CCe-eeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEE
Q 031268 47 VLVLMISTPNR-----DDL-VFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGY 120 (162)
Q Consensus 47 ~~vLLv~r~~~-----~~W-~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (162)
++|||.+|... +.| .+|||++++|||+++||+|||+||||+..... ..++.+.+..... ....+
T Consensus 49 g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~-~~~~~~~~~~~~~---------~~~~~ 118 (180)
T PRK15393 49 GKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPF-AEHGQFYFEDENC---------RVWGA 118 (180)
T ss_pred CeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccc-eeceeEEecCCCc---------eEEEE
Confidence 58999888643 234 68999999999999999999999999986544 3456654433211 11234
Q ss_pred EEEEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268 121 MFALEVTEELESWPEQANYKRIWVSNNHFLWRK 153 (162)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~ 153 (162)
+|.+...... .....+...++|++++++.+++
T Consensus 119 ~f~~~~~~~~-~~~~~E~~~~~W~~~~el~~~~ 150 (180)
T PRK15393 119 LFSCVSHGPF-ALQEEEVSEVCWMTPEEITARC 150 (180)
T ss_pred EEEEEeCCCC-CCChHHeeEEEECCHHHHhhhh
Confidence 5555443221 2223345789999999999873
No 58
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.77 E-value=7.1e-18 Score=116.57 Aligned_cols=91 Identities=21% Similarity=0.180 Sum_probs=68.2
Q ss_pred EEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEEEec
Q 031268 48 LVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVT 127 (162)
Q Consensus 48 ~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 127 (162)
++||++++ .+.|.||||++++||++++||+||++||||+.+... ..++.|.+..... .....+|.+.+.
T Consensus 12 ~vLl~~~~-~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~-~~l~~~~~~~~~~---------~~~~~~y~a~~~ 80 (118)
T cd04665 12 GLLLVRHK-DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSL-TLVGYYQVDLFES---------GFETLVYPAVSA 80 (118)
T ss_pred EEEEEEeC-CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCce-EEEEEEEecCCCC---------cEEEEEEEEEEE
Confidence 89999887 457999999999999999999999999999998655 5778776554321 224566666655
Q ss_pred ccccCCcccccceeEEeeHhHH
Q 031268 128 EELESWPEQANYKRIWVSNNHF 149 (162)
Q Consensus 128 ~~~~~~~~~~~~~~~W~~~~ea 149 (162)
......+..+.....|++....
T Consensus 81 ~~~~~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 81 QLEEKASYLETDGPVLFKNEPE 102 (118)
T ss_pred ecccccccccccCcEEeccCCc
Confidence 4433335566688899997655
No 59
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.75 E-value=1.9e-17 Score=124.38 Aligned_cols=112 Identities=21% Similarity=0.154 Sum_probs=77.1
Q ss_pred eEEEEEEEeccCCcccccccccCceEEEEEEeCCCC---------CeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC
Q 031268 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRD---------DLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE 93 (162)
Q Consensus 23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~---------~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~ 93 (162)
-+|++|++..+ +++|||+++.+.+ .|++|+|.+|+|||+++||+|||.||||+.+...
T Consensus 50 ~~V~il~~~~~------------~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~- 116 (202)
T PRK10729 50 HAAVLLPFDPV------------RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRT- 116 (202)
T ss_pred CeEEEEEEECC------------CCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEE-
Confidence 46777778653 2589999985432 3899999999999999999999999999997655
Q ss_pred CCeeeEEeecccccccCCCCCCceEEEEEEEEeccc--c---cCCcccccceeEEeeHhHHhhhhccc
Q 031268 94 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE--L---ESWPEQANYKRIWVSNNHFLWRKHSN 156 (162)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~---~~~~~~~~~~~~W~~~~ea~~~~~~~ 156 (162)
..++.|....... ....++|.+..... . ....+.+..++.|++++++.+++.++
T Consensus 117 ~~l~~~~~spg~~---------~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G 175 (202)
T PRK10729 117 KPVLSYLASPGGT---------SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG 175 (202)
T ss_pred EEEEEEEcCCCcC---------ceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcC
Confidence 3455443222111 13567777764221 1 11223344679999999999986554
No 60
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.75 E-value=1.2e-17 Score=123.90 Aligned_cols=112 Identities=20% Similarity=0.095 Sum_probs=77.9
Q ss_pred eEEEEEEEeccCCcccccccccCceEEEEEEeCC---------CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC
Q 031268 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---------RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE 93 (162)
Q Consensus 23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---------~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~ 93 (162)
.+|++|++..+ +++|||+++.+ ...|+||||++|+|||+++||+||++||||+.+...
T Consensus 45 ~~v~vl~~~~~------------~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~- 111 (185)
T TIGR00052 45 NAAAVLLYDPK------------KDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNL- 111 (185)
T ss_pred CeEEEEEEECC------------CCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecce-
Confidence 46777777654 35899999853 124899999999999999999999999999998655
Q ss_pred CCeeeEEeecccccccCCCCCCceEEEEEEEEecccc----cCCcccccceeEEeeHhHHhhhhccc
Q 031268 94 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL----ESWPEQANYKRIWVSNNHFLWRKHSN 156 (162)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~~~~~~~W~~~~ea~~~~~~~ 156 (162)
..++.+..... ......++|.+...... ....+.+..+..|++++++.+++.++
T Consensus 112 ~~~~~~~~~~g---------~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G 169 (185)
T TIGR00052 112 RKLLSFYSSPG---------GVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG 169 (185)
T ss_pred EEEEEEEcCCC---------CCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcC
Confidence 35555432211 11235677877754321 11223344678999999999986554
No 61
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=3.5e-17 Score=116.74 Aligned_cols=106 Identities=19% Similarity=0.107 Sum_probs=65.3
Q ss_pred eEEEEEEeCC-----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC---CCeeeEEeecc--cccccCCCCCCc
Q 031268 47 VLVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE---NPLGEWEFRSK--SRMNSCNSKEGG 116 (162)
Q Consensus 47 ~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~---~~l~~~~~~~~--~~~~~~~~~~~~ 116 (162)
++|||++|.. .+.|.+|||++++||++++||+||++||||+.+.... ..++.+.+... ...... ....
T Consensus 13 ~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~ 90 (143)
T cd04694 13 QKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLP--KRHH 90 (143)
T ss_pred CEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeeccccccccCCCcc--ccee
Confidence 4899999963 3569999999999999999999999999999865421 24444432211 111000 0111
Q ss_pred eEEEEEEEEeccc----cc-CCcccccceeEEeeHhHHhhhhc
Q 031268 117 CRGYMFALEVTEE----LE-SWPEQANYKRIWVSNNHFLWRKH 154 (162)
Q Consensus 117 ~~~~~f~~~~~~~----~~-~~~~~~~~~~~W~~~~ea~~~~~ 154 (162)
...++|....... .. .....+..+++|+++++|.+++.
T Consensus 91 ~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~ 133 (143)
T cd04694 91 IVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVS 133 (143)
T ss_pred EEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHH
Confidence 2223333222111 01 11123457899999999999864
No 62
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.75 E-value=2.8e-17 Score=112.08 Aligned_cols=108 Identities=23% Similarity=0.283 Sum_probs=76.7
Q ss_pred EEEEEEEeccCCcccccccccCceEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 101 (162)
Q Consensus 24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~ 101 (162)
++++|+++.+ +++||+++.. .+.|.||||+++.||++.++|+||+.||+|+..... ...+.+.+
T Consensus 2 ~~~~i~~~~~-------------~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~-~~~~~~~~ 67 (123)
T cd02883 2 AVGAVILDED-------------GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVL-RLLGVYEV 67 (123)
T ss_pred ceEEEEECCC-------------CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceee-eEEEEEEe
Confidence 4667776653 4899999987 688999999999999999999999999999987533 34555554
Q ss_pred ecccccccCCCCCCceEEEEEEEEecccccC-CcccccceeEEeeHhHHhhh
Q 031268 102 RSKSRMNSCNSKEGGCRGYMFALEVTEELES-WPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~W~~~~ea~~~ 152 (162)
..... ......++|.+........ ..+.+....+|++++++.+.
T Consensus 68 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~ 112 (123)
T cd02883 68 ESPDE-------GEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPAL 112 (123)
T ss_pred eccCC-------CceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHHHCccc
Confidence 43211 1234567777766543221 22333467899999999875
No 63
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.75 E-value=3.2e-17 Score=131.99 Aligned_cols=112 Identities=22% Similarity=0.202 Sum_probs=73.7
Q ss_pred ceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG 97 (162)
Q Consensus 21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~ 97 (162)
...+|++|+++. ++|||++|.. .+.|.||||++|+|||+++||+||++||||+++... ...+
T Consensus 202 ~~vtv~avv~~~--------------g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~-~l~~ 266 (340)
T PRK05379 202 TFVTVDAVVVQS--------------GHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEP-VLRG 266 (340)
T ss_pred cceEEEEEEEEC--------------CEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCccccc-ccce
Confidence 357888888763 3899999864 466999999999999999999999999999986543 2233
Q ss_pred eE----EeecccccccCCCCCCceEEEEEEEEeccc-cc-CCcccccceeEEeeHhHHhhh
Q 031268 98 EW----EFRSKSRMNSCNSKEGGCRGYMFALEVTEE-LE-SWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 98 ~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~-~~~~~~~~~~~W~~~~ea~~~ 152 (162)
.+ .+...... .......++|.+..... .. ....++..+++|++++++..+
T Consensus 267 ~~~~~~~f~~p~r~-----~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 267 SIRDQQVFDHPGRS-----LRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAM 322 (340)
T ss_pred eeeeeEEEcCCCCC-----CCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhh
Confidence 22 11111100 11223445555544322 11 123344579999999999863
No 64
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.74 E-value=9.6e-18 Score=130.08 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=68.9
Q ss_pred eEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEE
Q 031268 47 VLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL 124 (162)
Q Consensus 47 ~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 124 (162)
++|||+++.. .+.|.+|||++|+|||+++||+||++||||+++... ..++.+.+... ....+.|.+
T Consensus 143 ~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~-~~~~s~~~~~p-----------~~lm~~f~a 210 (256)
T PRK00241 143 DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNL-RYVGSQPWPFP-----------HSLMLGFHA 210 (256)
T ss_pred CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeee-EEEEeEeecCC-----------CeEEEEEEE
Confidence 5899999864 467999999999999999999999999999997655 45555443221 124556766
Q ss_pred EecccccCCcccccceeEEeeHhHHhhhh
Q 031268 125 EVTEELESWPEQANYKRIWVSNNHFLWRK 153 (162)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~W~~~~ea~~~~ 153 (162)
..........+.+..+++||+++|+..+.
T Consensus 211 ~~~~~~~~~~~~Ei~~a~W~~~del~~lp 239 (256)
T PRK00241 211 DYDSGEIVFDPKEIADAQWFRYDELPLLP 239 (256)
T ss_pred EecCCcccCCcccEEEEEEECHHHCcccC
Confidence 65432222233455789999999998763
No 65
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=6.4e-17 Score=114.06 Aligned_cols=108 Identities=22% Similarity=0.273 Sum_probs=72.5
Q ss_pred EEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCccc-ccCCCCee
Q 031268 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRG-LLDENPLG 97 (162)
Q Consensus 24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~-~~~~~~l~ 97 (162)
++++++++.+ ++|||+++.. .+.|.+|||++++|||+.+||.||++||||+.+ ... ..+.
T Consensus 2 ~~~~~i~~~~-------------g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~-~~~~ 67 (133)
T cd04685 2 AARVVLLDPD-------------DRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLG-PPVW 67 (133)
T ss_pred eEEEEEEcCC-------------CeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCcccccc-ceEE
Confidence 5778888765 4899998753 246999999999999999999999999999987 443 3333
Q ss_pred eEE--eecccccccCCCCCCceEEEEEEEEecccc---cCC--cc-cccceeEEeeHhHHhhh
Q 031268 98 EWE--FRSKSRMNSCNSKEGGCRGYMFALEVTEEL---ESW--PE-QANYKRIWVSNNHFLWR 152 (162)
Q Consensus 98 ~~~--~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~--~~-~~~~~~~W~~~~ea~~~ 152 (162)
... +..... ......++|.+...... ..+ .+ .....++|++++++.+.
T Consensus 68 ~~~~~f~~~~~-------~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 68 RRDAAFTFLGV-------DGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred EEEEEEEecCc-------cceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 222 221111 11234567877665321 111 11 12357899999999874
No 66
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.73 E-value=8.2e-17 Score=111.71 Aligned_cols=94 Identities=20% Similarity=0.203 Sum_probs=64.8
Q ss_pred eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268 47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (162)
Q Consensus 47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (162)
++|||++|... +.|+||||++++|||+.+||.||++||||+.+... ..++.+.+..... ....++|
T Consensus 16 ~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~-~~~~~~~~~~~~~---------~~~~~~~ 85 (129)
T PRK10776 16 NEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHA-TLFEKLEYEFPDR---------HITLWFW 85 (129)
T ss_pred CEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecc-eEEEEEEeeCCCc---------EEEEEEE
Confidence 48999998653 67999999999999999999999999999986544 3455544333211 1234556
Q ss_pred EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268 123 ALEVTEELESWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~ 152 (162)
.+....... ...+..+.+|++++++...
T Consensus 86 ~~~~~~~~~--~~~e~~~~~W~~~~~l~~~ 113 (129)
T PRK10776 86 LVESWEGEP--WGKEGQPGRWVSQVALNAD 113 (129)
T ss_pred EEEEECCcc--CCccCCccEEecHHHCccC
Confidence 554322111 1223467899999999875
No 67
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.72 E-value=9.5e-17 Score=116.28 Aligned_cols=114 Identities=15% Similarity=0.011 Sum_probs=75.2
Q ss_pred cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-----CCeeeC-CCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFP-KGGWEDDETVSEAACREALEEAGVRGLLD 92 (162)
Q Consensus 19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-gG~ve~gEt~~eaa~REl~EEtGl~~~~~ 92 (162)
+-++.++++++++.+ ++|||.+|... +.|++| ||+++.|| .+||+||++|||||.+...
T Consensus 24 g~~h~~v~v~v~~~~-------------g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~ 88 (158)
T TIGR02150 24 TPLHRAFSVFLFNEE-------------GQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDV 88 (158)
T ss_pred CCeEEEEEEEEEcCC-------------CeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCcccc
Confidence 455677777777654 48999988642 679887 79999999 4999999999999987644
Q ss_pred C-CCeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhc
Q 031268 93 E-NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKH 154 (162)
Q Consensus 93 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~ 154 (162)
. ..++.+.|...... ......++|.+..... ......+..+++|++++|+.+++.
T Consensus 89 ~l~~~~~~~~~~~~~~------g~~~~~~~f~~~~~~~-~~~~~~Ev~~~~W~~~~el~~~~~ 144 (158)
T TIGR02150 89 PLTVLPRFSYRARDAW------GEHELCPVFFARAPVP-LNPNPEEVAEYRWVSLEELKEILK 144 (158)
T ss_pred ceEEcceEEEEEecCC------CcEEEEEEEEEecCCc-ccCChhHeeeEEEeCHHHHHHHHh
Confidence 1 12333333322110 0123456676655432 222233568899999999998864
No 68
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.71 E-value=2.7e-16 Score=113.30 Aligned_cols=93 Identities=27% Similarity=0.211 Sum_probs=67.8
Q ss_pred EEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEEEec
Q 031268 48 LVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVT 127 (162)
Q Consensus 48 ~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 127 (162)
++||+++... .|+||||++|+|||+++||+||++||||+.+... ..++.|...... .....++|.+...
T Consensus 36 ~~LL~~~~~~-~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~-~~lg~~~~~~~~---------~~~~~~vf~A~~~ 104 (156)
T TIGR02705 36 QWLLTEHKRR-GLEFPGGKVEPGETSKEAAIREVMEETGAIVKEL-HYIGQYEVEGES---------TDFVKDVYFAEVS 104 (156)
T ss_pred EEEEEEEcCC-cEECCceecCCCCCHHHHHHHHHHHHhCcEeeee-EEEEEEEecCCC---------cEEEEEEEEEEEe
Confidence 7999988754 5999999999999999999999999999998766 578877654322 1224566777665
Q ss_pred ccccCCcccccceeE-EeeHhHHhhhhc
Q 031268 128 EELESWPEQANYKRI-WVSNNHFLWRKH 154 (162)
Q Consensus 128 ~~~~~~~~~~~~~~~-W~~~~ea~~~~~ 154 (162)
.. ... .+..+.. +++++++.+++.
T Consensus 105 ~~-~~~--~e~~E~~~~~~~~~~~~~~~ 129 (156)
T TIGR02705 105 AL-ESK--DDYLETKGPVLLQEIPDIIK 129 (156)
T ss_pred cc-ccC--CCceeeEeEEEHHHHHHHHh
Confidence 32 222 2234555 799999988743
No 69
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.71 E-value=2.9e-16 Score=107.83 Aligned_cols=94 Identities=21% Similarity=0.182 Sum_probs=67.3
Q ss_pred eEEEEEEeCC----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268 47 VLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (162)
Q Consensus 47 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (162)
+++||++|.. .+.|.||||+++++|+++++|.||+.||||+..... ..++.+.+..... ....++|
T Consensus 13 ~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~-~~~~~~~~~~~~~---------~~~~~~~ 82 (124)
T cd03425 13 GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVG-ELLATVEHDYPDK---------RVTLHVF 82 (124)
T ss_pred CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEecc-ceEEEEEeeCCCC---------eEEEEEE
Confidence 5899998864 356999999999999999999999999999987654 4566655433211 2245666
Q ss_pred EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268 123 ALEVTEELESWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~ 152 (162)
.+....... ...+...+.|++++++..+
T Consensus 83 ~~~~~~~~~--~~~e~~~~~W~~~~el~~~ 110 (124)
T cd03425 83 LVELWSGEP--QLLEHQELRWVPPEELDDL 110 (124)
T ss_pred EEeeeCCCc--ccccCceEEEeeHHHcccC
Confidence 655432211 1223468899999999876
No 70
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.70 E-value=6.2e-16 Score=114.14 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=79.1
Q ss_pred cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-----CCe-eeCCCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDL-VFPKGGWEDDETVSEAACREALEEAGVRGLLD 92 (162)
Q Consensus 19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W-~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~ 92 (162)
+-++.++-+.+|..+.. +.++|++.+|... +.| .+|||++++|||+.+||+||++||||+.....
T Consensus 29 g~~h~~v~~~~~~~~~~---------~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~ 99 (180)
T cd03676 29 GLVTYGVHLNGYVRDED---------GGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLV 99 (180)
T ss_pred CceEEEEEEEEEEEcCC---------CCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 44456666556654420 1478888888542 568 69999999999999999999999999986543
Q ss_pred C--CCeeeEEeecc-cccccCCCCCCceEEEEEEEEecccc-cCCcccccceeEEeeHhHHhhhhccc
Q 031268 93 E--NPLGEWEFRSK-SRMNSCNSKEGGCRGYMFALEVTEEL-ESWPEQANYKRIWVSNNHFLWRKHSN 156 (162)
Q Consensus 93 ~--~~l~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~W~~~~ea~~~~~~~ 156 (162)
. ..++.+.|... ... .......++|.+...... ....+.+..++.|++++|+.+++..+
T Consensus 100 ~~l~~~g~~~~~~~~~~~-----~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~g 162 (180)
T cd03676 100 RQLKPVGVVSYLREGEAG-----GLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRALKEG 162 (180)
T ss_pred hhceeccEEEEEEEcCCC-----cEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHcC
Confidence 1 23454443322 111 011124566766543221 12233445789999999999987553
No 71
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.69 E-value=4.6e-16 Score=115.85 Aligned_cols=112 Identities=17% Similarity=0.084 Sum_probs=73.5
Q ss_pred ceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeCCCccCCC-CCHHHHHHHHHHHHhCcccccCCC
Q 031268 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDD-ETVSEAACREALEEAGVRGLLDEN 94 (162)
Q Consensus 21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~g-Et~~eaa~REl~EEtGl~~~~~~~ 94 (162)
.+.+|.+|++..++ ++.|||++|.. .+.|+||||++|++ ||+++||+||++||||+..... .
T Consensus 29 ~~~aavvl~l~~~~-----------~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~-~ 96 (190)
T PRK10707 29 QRQAAVLIPIVRRP-----------QPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAV-E 96 (190)
T ss_pred CCCeEEEEEEEECC-----------CCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccce-E
Confidence 45677777776442 35888888642 35699999999985 6899999999999999997666 4
Q ss_pred CeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCc-ccccceeEEeeHhHHhhhh
Q 031268 95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWP-EQANYKRIWVSNNHFLWRK 153 (162)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~W~~~~ea~~~~ 153 (162)
.++.+........ ..+..|.+.+.......+ +++..++.|++++++.++.
T Consensus 97 ~lg~l~~~~~~~~---------~~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 97 VIGVLPPVDSSTG---------YQVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred EEEEeeeeeccCC---------cEEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCcc
Confidence 6776642221111 123333333322222222 2345789999999998874
No 72
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=5.3e-16 Score=107.75 Aligned_cols=94 Identities=16% Similarity=0.054 Sum_probs=64.9
Q ss_pred eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268 47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (162)
Q Consensus 47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (162)
++|||.+|... +.|+||||++++|||+++|++||+.||||+.+... ..++.+.+..... ....++|
T Consensus 16 ~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~-~~~~~~~h~~~~~---------~~~~~~~ 85 (128)
T TIGR00586 16 GEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFS-EFEKLEYEFYPRH---------ITLWFWL 85 (128)
T ss_pred CEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceee-eEEEEEEEECCCc---------EEEEEEE
Confidence 48999988643 57999999999999999999999999999987654 3455544332211 1245566
Q ss_pred EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268 123 ALEVTEELESWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~ 152 (162)
.+...+.... ..+...++|++++++.++
T Consensus 86 ~~~~~~~~~~--~~~~~~~~W~~~~~l~~~ 113 (128)
T TIGR00586 86 LERWEGGPPG--KEGQPEEWWVLVGLLADD 113 (128)
T ss_pred EEEEcCCCcC--cccccccEEeCHHHCCcc
Confidence 5554332111 122357899999999876
No 73
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.67 E-value=9.8e-16 Score=114.14 Aligned_cols=111 Identities=17% Similarity=0.049 Sum_probs=75.4
Q ss_pred eEEEEEEEeccCCcccccccccCceEEEEEEeCCCC--------C--eeeCCCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRD--------D--LVFPKGGWEDDETVSEAACREALEEAGVRGLLD 92 (162)
Q Consensus 23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~--------~--W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~ 92 (162)
.+|++|++..+ .++|||+++.+.+ . |++|+|.+|+| +|++||+||+.||||+.+...
T Consensus 46 ~~v~Vl~~~~~------------~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~ 112 (191)
T PRK15009 46 NGATILLYNAK------------KKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEV 112 (191)
T ss_pred CEEEEEEEECC------------CCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceE
Confidence 46777777653 3589999985432 2 89999999976 799999999999999987655
Q ss_pred CCCeeeEEeecccccccCCCCCCceEEEEEEEEeccc--cc--CCcccccceeEEeeHhHHhhhhccc
Q 031268 93 ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE--LE--SWPEQANYKRIWVSNNHFLWRKHSN 156 (162)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~--~~~~~~~~~~~W~~~~ea~~~~~~~ 156 (162)
..++.+. .+.... ....++|.+..... .. ...+.+..++.|++++|+.+++.++
T Consensus 113 -~~l~~~~-~spG~s--------~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G 170 (191)
T PRK15009 113 -RKLFELY-MSPGGV--------TELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTG 170 (191)
T ss_pred -EEeeEEE-cCCccc--------CcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcC
Confidence 3555542 222111 12567777765321 11 1123344689999999999987554
No 74
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.64 E-value=4.1e-15 Score=103.64 Aligned_cols=43 Identities=33% Similarity=0.376 Sum_probs=38.0
Q ss_pred ceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCccc
Q 031268 46 KVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRG 89 (162)
Q Consensus 46 ~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~ 89 (162)
+.+||+++... +.|.||||++++|||+.+||+||++||||+.+
T Consensus 13 ~~~ll~~r~~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 13 VLELLVFEHPL-AGFQIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred eEEEEEEEcCC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 46777776655 56999999999999999999999999999986
No 75
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.63 E-value=5.7e-15 Score=109.24 Aligned_cols=45 Identities=24% Similarity=0.266 Sum_probs=41.6
Q ss_pred cCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcc
Q 031268 44 EKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVR 88 (162)
Q Consensus 44 ~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~ 88 (162)
....+||+++|...+.|.||||++++|||+.+||+||++||||+.
T Consensus 46 ~~~l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~ 90 (186)
T cd03670 46 KPILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNS 90 (186)
T ss_pred CCeeEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence 357899999999889999999999999999999999999999765
No 76
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=1.4e-14 Score=100.01 Aligned_cols=44 Identities=39% Similarity=0.361 Sum_probs=37.6
Q ss_pred EEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCccccc
Q 031268 48 LVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLL 91 (162)
Q Consensus 48 ~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~ 91 (162)
.+||++|.. .+.|.||||++|+|||+++||.||++||||+++..
T Consensus 16 ~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 16 GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 367776643 36799999999999999999999999999998753
No 77
>PRK08999 hypothetical protein; Provisional
Probab=99.59 E-value=2e-14 Score=114.46 Aligned_cols=94 Identities=21% Similarity=0.196 Sum_probs=65.0
Q ss_pred eEEEEEEeCC----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268 47 VLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (162)
Q Consensus 47 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (162)
++|||.+|.. .+.|+||||++++||++.+||.||++||||+.+... ..++.+.+..... ....++|
T Consensus 17 ~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~-~~l~~~~h~~~~~---------~~~i~~y 86 (312)
T PRK08999 17 GRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAA-RPLITVRHDYPDK---------RVRLDVR 86 (312)
T ss_pred CeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecc-eeEEEEEEEcCCC---------eEEEEEE
Confidence 4899998864 357999999999999999999999999999987654 3455544332211 1245566
Q ss_pred EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268 123 ALEVTEELESWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~ 152 (162)
.+...... ....+...++|++++++.++
T Consensus 87 ~~~~~~~~--~~~~e~~~~~Wv~~~el~~~ 114 (312)
T PRK08999 87 RVTAWQGE--PHGREGQPLAWVAPDELAVY 114 (312)
T ss_pred EEEEecCc--ccCccCCccEEecHHHcccC
Confidence 55432211 11223467899999998875
No 78
>PLN02709 nudix hydrolase
Probab=99.56 E-value=3.8e-14 Score=107.17 Aligned_cols=118 Identities=15% Similarity=0.084 Sum_probs=74.2
Q ss_pred cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeCCCccCCCC-CHHHHHHHHHHHHhCcccccC
Q 031268 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDDE-TVSEAACREALEEAGVRGLLD 92 (162)
Q Consensus 19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~gE-t~~eaa~REl~EEtGl~~~~~ 92 (162)
..+|.++..|++...+. ..+++.+|||++|.. .|.|+||||++|++| ++.+||+||+.||+||.....
T Consensus 29 ~~~r~AAVLv~l~~~~~------~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v 102 (222)
T PLN02709 29 FPAKSSAVLVCLYQEQR------EDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLV 102 (222)
T ss_pred CCCCccEEEEEEeeccC------CCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchhe
Confidence 34566666666654210 001357899999964 367999999999974 799999999999999986544
Q ss_pred CCCeeeEEeecccccccCCCCCCceEEEEEEEEecc--ccc-CCcccccceeEEeeHhHHhhh
Q 031268 93 ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTE--ELE-SWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~-~~~~~~~~~~~W~~~~ea~~~ 152 (162)
..+|.++...... ...++-|.+.+.. ... .....|..++.|++++.+++.
T Consensus 103 -~vlg~L~~~~t~s---------g~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 103 -TIISVLEPFVNKK---------GMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred -EEeeecCCeECCC---------CCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence 3556543222111 1134444443432 111 112234578999999998764
No 79
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.48 E-value=4.2e-13 Score=93.69 Aligned_cols=102 Identities=25% Similarity=0.259 Sum_probs=63.3
Q ss_pred eEEEEEEeCCCC-CeeeCCCccCCCCCHHH-HHHHHHHHHhCccccc--CCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268 47 VLVLMISTPNRD-DLVFPKGGWEDDETVSE-AACREALEEAGVRGLL--DENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (162)
Q Consensus 47 ~~vLLv~r~~~~-~W~lPgG~ve~gEt~~e-aa~REl~EEtGl~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (162)
.+||+.+++... .|.||||++|+||++.+ ||+||++||||+.... . ..++.+......... ........++
T Consensus 24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~ 98 (161)
T COG0494 24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERL-ELLGEFPPSPGDGSS----VGGREHRVFF 98 (161)
T ss_pred CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecc-eeeeeccCcccCccc----ccceEEEEEE
Confidence 589999998776 89999999999999888 9999999999999763 3 344444332221110 0001122222
Q ss_pred EEEecccc--c--CC--cccccceeEEeeHhHHhhhh
Q 031268 123 ALEVTEEL--E--SW--PEQANYKRIWVSNNHFLWRK 153 (162)
Q Consensus 123 ~~~~~~~~--~--~~--~~~~~~~~~W~~~~ea~~~~ 153 (162)
........ . .. ...+...+.|++++++....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 135 (161)
T COG0494 99 VAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALV 135 (161)
T ss_pred eeeccccccccccccCCCcchhhceeeeeHHHccccc
Confidence 22211111 1 11 01345789999999988763
No 80
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.45 E-value=9.8e-14 Score=107.35 Aligned_cols=96 Identities=20% Similarity=0.143 Sum_probs=66.6
Q ss_pred EEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEEE
Q 031268 48 LVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALE 125 (162)
Q Consensus 48 ~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 125 (162)
++||.++.. .+.+.+-.|+||+|||+++|+.||++||+|+++... ..+++..|+.... .+.-|.+.
T Consensus 156 ~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~v-rY~~SQPWPfP~S-----------LMigf~ae 223 (279)
T COG2816 156 EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNV-RYVGSQPWPFPHS-----------LMLGFMAE 223 (279)
T ss_pred ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeee-eEEeccCCCCchh-----------hhhhheee
Confidence 588887754 467999999999999999999999999999998766 4556544444321 22223343
Q ss_pred ecccccCCcccccceeEEeeHhHHhhhhcc
Q 031268 126 VTEELESWPEQANYKRIWVSNNHFLWRKHS 155 (162)
Q Consensus 126 ~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~ 155 (162)
+....-...+.|..+++||+.+|++.++.+
T Consensus 224 y~sgeI~~d~~Eleda~WFs~~evl~~L~~ 253 (279)
T COG2816 224 YDSGEITPDEGELEDARWFSRDEVLPALPP 253 (279)
T ss_pred eccccccCCcchhhhccccCHhHHhhhcCC
Confidence 333222223345678999999997776543
No 81
>PLN03143 nudix hydrolase; Provisional
Probab=99.44 E-value=2.9e-12 Score=100.75 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=37.9
Q ss_pred ceEEEEEEeCCC----CCeeeCCCccCC-CCCHHHHHHHHHHHHhCcccc
Q 031268 46 KVLVLMISTPNR----DDLVFPKGGWED-DETVSEAACREALEEAGVRGL 90 (162)
Q Consensus 46 ~~~vLLv~r~~~----~~W~lPgG~ve~-gEt~~eaa~REl~EEtGl~~~ 90 (162)
+.+|||+++.+. ..|+||+|.+|+ +|++.+||+||++||||+.+.
T Consensus 142 e~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~ 191 (291)
T PLN03143 142 ETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLK 191 (291)
T ss_pred CEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccc
Confidence 456999998652 248999999998 589999999999999999753
No 82
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=99.39 E-value=2.8e-12 Score=87.75 Aligned_cols=69 Identities=29% Similarity=0.305 Sum_probs=55.9
Q ss_pred ceeEEEEEEEeccCCcccccccccCceEEEEEEe-------CCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC
Q 031268 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMIST-------PNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE 93 (162)
Q Consensus 21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r-------~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~ 93 (162)
+..++|+++|+..+ +...|||++. ++.+.|.+|+|....||++..||.||..||+||.++-..
T Consensus 2 pK~SAGvLlYR~~a----------G~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~ 71 (161)
T COG4119 2 PKLSAGVLLYRARA----------GVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPR 71 (161)
T ss_pred CcccceeEEEEecC----------CCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCch
Confidence 35688999999875 5789999986 345779999999999999999999999999999875332
Q ss_pred CCeeeE
Q 031268 94 NPLGEW 99 (162)
Q Consensus 94 ~~l~~~ 99 (162)
..+|.+
T Consensus 72 ~~lG~~ 77 (161)
T COG4119 72 IDLGSL 77 (161)
T ss_pred hhhhhh
Confidence 345544
No 83
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.36 E-value=1.5e-11 Score=94.85 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=68.2
Q ss_pred cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-----CCeeeC-CCcc----CCCC-------------CHHH
Q 031268 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFP-KGGW----EDDE-------------TVSE 75 (162)
Q Consensus 19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-gG~v----e~gE-------------t~~e 75 (162)
+-++.++.+++++.+ +++||.+|... +.|... +|++ ++|| +..+
T Consensus 53 gl~Hra~~v~i~n~~-------------g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~e 119 (247)
T PLN02552 53 GLLHRAFSVFLFNSK-------------YELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKN 119 (247)
T ss_pred CceEEEEEEEEEcCC-------------CeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHH
Confidence 456777777777654 58999988653 368444 3444 4332 1679
Q ss_pred HHHHHHHHHhCcccccCC----CCeeeEEeecccccccC--CCCCCceEEEEEEEE-ecccccCCcccccceeEEeeHhH
Q 031268 76 AACREALEEAGVRGLLDE----NPLGEWEFRSKSRMNSC--NSKEGGCRGYMFALE-VTEELESWPEQANYKRIWVSNNH 148 (162)
Q Consensus 76 aa~REl~EEtGl~~~~~~----~~l~~~~~~~~~~~~~~--~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~W~~~~e 148 (162)
||+||+.|||||.....+ ..++.+.|........+ .........++|... ..........++..+++|+++++
T Consensus 120 AA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~~e 199 (247)
T PLN02552 120 AAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNREE 199 (247)
T ss_pred HHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeHHH
Confidence 999999999999854321 23455555443210000 000001112222222 22211222233457899999999
Q ss_pred Hhhhhc
Q 031268 149 FLWRKH 154 (162)
Q Consensus 149 a~~~~~ 154 (162)
+.+++.
T Consensus 200 l~~~~~ 205 (247)
T PLN02552 200 LKEMMR 205 (247)
T ss_pred HHHHHh
Confidence 998853
No 84
>PLN02791 Nudix hydrolase homolog
Probab=99.30 E-value=4.9e-11 Score=104.07 Aligned_cols=122 Identities=11% Similarity=0.009 Sum_probs=75.4
Q ss_pred cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeee-CCCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVF-PKGGWEDDETVSEAACREALEEAGVRGLLD 92 (162)
Q Consensus 19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~eaa~REl~EEtGl~~~~~ 92 (162)
+-++.++-+.+++.+ +++|||.+|.. .+.|.+ ||||++.|||+.+||+||+.||+||.+...
T Consensus 29 Gl~HrAvhVwIfn~~------------~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~ 96 (770)
T PLN02791 29 GDYHRAVHVWIYSES------------TQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKD 96 (770)
T ss_pred CCceEEEEEEEEECC------------CCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChh
Confidence 445666666667643 25898888854 257988 799999999999999999999999985322
Q ss_pred C-CCeeeEEeecccccccCCCCCCceEEEEEEEEeccccc----CCcccccceeEEeeHhHHhhhhcc
Q 031268 93 E-NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELE----SWPEQANYKRIWVSNNHFLWRKHS 155 (162)
Q Consensus 93 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~~~~~~~W~~~~ea~~~~~~ 155 (162)
. ..++.+.+........ ...+...++|.+......+ ....+|..+++|++++|+.+++..
T Consensus 97 ~l~~l~~~~~~~~~~~g~---~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l~~ 161 (770)
T PLN02791 97 AFELLFVFLQECVINDGK---FINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSALAK 161 (770)
T ss_pred heeeeeeEEEEeeccCCC---cceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHHhc
Confidence 1 2445443322111100 0011233455544222111 122345689999999999987643
No 85
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.29 E-value=6.4e-13 Score=103.58 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=61.5
Q ss_pred eEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEE--E
Q 031268 47 VLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYM--F 122 (162)
Q Consensus 47 ~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--f 122 (162)
.+.||.++++ .+.|..+.|++|+|||++|||+||++||||+++... .....-.++.. .+...+ +
T Consensus 200 ~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I-~~~asQPWP~~-----------p~SLMIgc~ 267 (345)
T KOG3084|consen 200 KHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVI-SYVASQPWPLM-----------PQSLMIGCL 267 (345)
T ss_pred CEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeE-eeeecCCCCCC-----------chHHHHHHH
Confidence 3667766544 356999999999999999999999999999998765 22222222210 111111 1
Q ss_pred EE-EecccccCCcccccceeEEeeHhHHhhhhc-cccc
Q 031268 123 AL-EVTEELESWPEQANYKRIWVSNNHFLWRKH-SNLV 158 (162)
Q Consensus 123 ~~-~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~-~~l~ 158 (162)
.+ ...+......+.+...++||+-+|+.+.+. .++.
T Consensus 268 ala~~~~~I~vd~dlEleDaqwF~r~ev~~aL~~kg~~ 305 (345)
T KOG3084|consen 268 ALAKLNGKISVDKDLELEDAQWFDREEVKSALTTKGLV 305 (345)
T ss_pred HHHhhCCccccCcchhhhhcccccHHHHHHHHHhcCCc
Confidence 11 111211222333446789999999987643 4443
No 86
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.11 E-value=2.5e-09 Score=78.53 Aligned_cols=48 Identities=29% Similarity=0.447 Sum_probs=41.1
Q ss_pred CceEEEEEEeCC--CCC--eeeCCCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268 45 KKVLVLMISTPN--RDD--LVFPKGGWEDDETVSEAACREALEEAGVRGLLD 92 (162)
Q Consensus 45 ~~~~vLLv~r~~--~~~--W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~ 92 (162)
++..++|+++-+ .++ .+||.|-|+.|||++.||+|||+||||+...+.
T Consensus 86 G~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~ 137 (225)
T KOG3041|consen 86 GKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVD 137 (225)
T ss_pred CcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceee
Confidence 467999999854 344 689999999999999999999999999996554
No 87
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.94 E-value=9e-09 Score=77.64 Aligned_cols=115 Identities=19% Similarity=0.158 Sum_probs=68.8
Q ss_pred eeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeCCCccCCCC-CHHHHHHHHHHHHhCcccccCCCC
Q 031268 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDDE-TVSEAACREALEEAGVRGLLDENP 95 (162)
Q Consensus 22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~gE-t~~eaa~REl~EEtGl~~~~~~~~ 95 (162)
+.++.+||+-..++ ++.+|||.+|.. .|.-+||||..|+.+ |-.++|.||..||.|+..... ..
T Consensus 42 ~~~aVlI~L~~~~~---------~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~-~~ 111 (246)
T KOG3069|consen 42 RKAAVLIPLVQVGS---------GELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELV-DV 111 (246)
T ss_pred CCccEEEEEEEcCC---------CceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHh-hh
Confidence 45666777665532 468999998854 256799999999854 788899999999999986544 34
Q ss_pred eeeEEeecccccccCCCCCCceEEEEEEEEecc-cccCCcccccceeEEeeHhHHhhh
Q 031268 96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTE-ELESWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~W~~~~ea~~~ 152 (162)
+|...-..... .+ ....+..|.....- ........+...+.|+++++.+.-
T Consensus 112 ~g~l~~~~~r~-~~-----~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~ 163 (246)
T KOG3069|consen 112 LGALPPFVLRS-GW-----SVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLP 163 (246)
T ss_pred hhhccceeecc-Cc-----ccceeEEEEecccccccccCCchheeeeeeeeHHHHhhh
Confidence 44432111100 00 01122222222110 111222334468899999998754
No 88
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.93 E-value=3.1e-08 Score=67.26 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=58.9
Q ss_pred eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268 47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (162)
Q Consensus 47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (162)
+++||.+|... |.|+||+|.++.+|+.+++..|++.+|.++ .. ..++.+.+..+.. .....+|
T Consensus 14 ~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~H~fth~---------~~~~~~~ 80 (118)
T cd03431 14 GRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SL-EPLGTVKHTFTHF---------RLTLHVY 80 (118)
T ss_pred CeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---cc-ccceeEEEecCCe---------EEEEEEE
Confidence 48999988653 569999999999999999999999998764 11 2344444333221 1245566
Q ss_pred EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268 123 ALEVTEELESWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~ 152 (162)
.+...... .+..+.+|++++++..+
T Consensus 81 ~~~~~~~~-----~~~~~~~W~~~eel~~~ 105 (118)
T cd03431 81 LARLEGDL-----LAPDEGRWVPLEELDEY 105 (118)
T ss_pred EEEEeCCC-----cCccccEEccHHHHhhC
Confidence 65543211 11246789999999875
No 89
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=1.6e-09 Score=84.59 Aligned_cols=110 Identities=18% Similarity=0.222 Sum_probs=68.9
Q ss_pred eeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCe
Q 031268 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPL 96 (162)
Q Consensus 22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l 96 (162)
+..+|+.+++.. .+||+++..+ .+.|-+|+|.|+++|++.++|+||++||||++.... ..+
T Consensus 115 ~vgvg~~V~n~~-------------~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~-eVl 180 (295)
T KOG0648|consen 115 RVGVGAFVLNKK-------------KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFV-EVL 180 (295)
T ss_pred heeeeeeEecCC-------------ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhh-hHH
Confidence 567777887754 4899997643 467999999999999999999999999999975433 111
Q ss_pred eeEEeecccccccCCCCCCceEEEEEEEEecc--cccCCcccccceeEEeeHhHHhhh
Q 031268 97 GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTE--ELESWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~~~~~~~W~~~~ea~~~ 152 (162)
. + ...+... ....+.-.+|.+.... ......+.++..++|+++++....
T Consensus 181 a-~--r~~H~~~----~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~q 231 (295)
T KOG0648|consen 181 A-F--RRAHNAT----FGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQ 231 (295)
T ss_pred H-H--Hhhhcch----hhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhcc
Confidence 1 1 1110000 0001223444444322 222334444566799999987765
No 90
>PLN02839 nudix hydrolase
Probab=98.72 E-value=1.4e-07 Score=76.00 Aligned_cols=104 Identities=12% Similarity=0.095 Sum_probs=68.6
Q ss_pred ceEEEEEEeCCC-----CCe-eeCCCccCCCCCHHHHHHHHHHHHhCcccccC--CCCeeeEEeecccccccCCCCCCce
Q 031268 46 KVLVLMISTPNR-----DDL-VFPKGGWEDDETVSEAACREALEEAGVRGLLD--ENPLGEWEFRSKSRMNSCNSKEGGC 117 (162)
Q Consensus 46 ~~~vLLv~r~~~-----~~W-~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~ 117 (162)
+.++-+-+|... +.| .+.+|++..|||+.++++||+.||+||..... ....|.+.|........ ...
T Consensus 217 ~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~-----~~e 291 (372)
T PLN02839 217 QKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCF-----KRD 291 (372)
T ss_pred CeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCcc-----ccC
Confidence 456555555321 345 56689999999999999999999999974421 13567777664322211 122
Q ss_pred EEEEEEEEeccccc-CCcccccceeEEeeHhHHhhhhc
Q 031268 118 RGYMFALEVTEELE-SWPEQANYKRIWVSNNHFLWRKH 154 (162)
Q Consensus 118 ~~~~f~~~~~~~~~-~~~~~~~~~~~W~~~~ea~~~~~ 154 (162)
..|+|.+.+..... ...+.|..++.+++++|+.+.+.
T Consensus 292 vly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l~ 329 (372)
T PLN02839 292 VLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANVIR 329 (372)
T ss_pred EEEEeeeecCCccccCCCccceeEEEEecHHHHHHHHH
Confidence 55678777665332 23344558899999999998754
No 91
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.60 E-value=2.6e-07 Score=66.88 Aligned_cols=116 Identities=14% Similarity=0.041 Sum_probs=75.6
Q ss_pred ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-----CCee-eCCCccCCCCCHHHHHHHHHHHHhCcccccC--
Q 031268 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLV-FPKGGWEDDETVSEAACREALEEAGVRGLLD-- 92 (162)
Q Consensus 21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~-lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~-- 92 (162)
.+.+..+.+|+.+ +++||.+|... +.|. ---||--+|||..+||+|-+.+|.||+....
T Consensus 32 LHrAFS~~lFne~-------------g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~ 98 (185)
T COG1443 32 LHRAFSSFLFNER-------------GQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDK 98 (185)
T ss_pred HHhhhheeEECCC-------------CceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCc
Confidence 4678889999876 47776666321 2341 1246777999999999999999999997622
Q ss_pred CCCeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhc
Q 031268 93 ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKH 154 (162)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~ 154 (162)
...+..|.|........ .....-++|.+.........| +|..+++|++++++.+++.
T Consensus 99 ~~il~rf~YrA~~~~~~----~E~Eic~V~~~~~~~~~~~np-dEV~~~~wv~~e~l~~~~~ 155 (185)
T COG1443 99 LEILPRFRYRAADPDGI----VENEICPVLAARLDSALDPNP-DEVMDYRWVSPEDLKEMVD 155 (185)
T ss_pred cccccceEEeccCCCCc----ceeeeeeEEEEeecCCCCCCh-HHhhheeccCHHHHHHhhc
Confidence 13455677766544321 112233555555554333333 3458999999999998753
No 92
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=98.49 E-value=2.2e-07 Score=69.58 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=51.0
Q ss_pred CceeEEEEEEEeccCCcccccccccCc--eEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHh
Q 031268 20 QLRLVAGCIPYKFEKNDENKNCKMEKK--VLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEA 85 (162)
Q Consensus 20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~--~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEt 85 (162)
++.+++.-|+-|-..+.+-++|...++ .+++.|++.+.+.|.+|||.+|+||....+++||+.||.
T Consensus 110 GPNHaadPiVtRwkrd~~gai~~~sgk~ile~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 110 GPNHAADPIVTRWKRDEDGAICRKSGKKILEFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred CCccccCcceeeeeecCCCCeeecccceeeEEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 445667677766443333344444433 788899999999999999999999999999999999996
No 93
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.08 E-value=1.2e-05 Score=54.66 Aligned_cols=91 Identities=20% Similarity=0.154 Sum_probs=50.7
Q ss_pred eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268 47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (162)
Q Consensus 47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (162)
+++||.+|..+ |.|+||.--++. ++..+.+.+.+.+..|+.+... ..++.+....++. ..++.+|
T Consensus 9 ~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~-~~~~~v~H~fSH~---------~~~~~~~ 77 (114)
T PF14815_consen 9 GRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSV-EPLGTVKHVFSHR---------RWTIHVY 77 (114)
T ss_dssp SEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE--S-SEEEEEE-SSE---------EEEEEEE
T ss_pred CEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhh-eecCcEEEEccce---------EEEEEEE
Confidence 58999999764 569999977663 3335555556667778876655 4667666554432 2256677
Q ss_pred EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268 123 ALEVTEELESWPEQANYKRIWVSNNHFLWR 152 (162)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~ 152 (162)
.+.+...... ......|++.+++.++
T Consensus 78 ~~~~~~~~~~----~~~~~~W~~~~~l~~~ 103 (114)
T PF14815_consen 78 EVEVSADPPA----EPEEGQWVSLEELDQY 103 (114)
T ss_dssp EEEEE-SS--------TTEEEEEGGGGGGS
T ss_pred EEEecCCCCC----CCCCcEEEEHHHHhhC
Confidence 7766543222 2357899999999876
No 94
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.76 E-value=6e-06 Score=65.33 Aligned_cols=56 Identities=29% Similarity=0.359 Sum_probs=48.3
Q ss_pred eEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccc
Q 031268 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL 90 (162)
Q Consensus 23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~ 90 (162)
.+.|+++++..- -++||++.-....|.||.|++..+|+-.+||+||+.||||.+..
T Consensus 83 Pv~ga~ild~~~------------sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 83 PVRGAIILDEKR------------SRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYS 138 (348)
T ss_pred CCchHhhhhhhh------------hhhheeeceecccccccCccccccchhhhcchhcccchhhcCHH
Confidence 456777777653 48999988877779999999999999999999999999999864
No 95
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=97.68 E-value=8.1e-05 Score=54.99 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=42.9
Q ss_pred cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCccc
Q 031268 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRG 89 (162)
Q Consensus 19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~ 89 (162)
.|+|.+|.+|++-... +-.+|||++.. ...|.||||.+.+||+..++..|-+.+-.|...
T Consensus 40 ~GmRrsVe~Vllvh~h----------~~PHvLLLq~~-~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~ 99 (188)
T PF13869_consen 40 EGMRRSVEGVLLVHEH----------GHPHVLLLQIG-NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPED 99 (188)
T ss_dssp HSSEEEEEEEEEEEET----------TEEEEEEEEET-TTEEE-SEEE--TT--HHHHHHHHHHHHHB-SS
T ss_pred hCCceEEEEEEEEecC----------CCcEEEEEecc-CccccCCccEeCCCCChhHHHHHHHHHHcCCCc
Confidence 5777777776655433 36899999854 447999999999999999999999999998863
No 96
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.08 E-value=0.012 Score=42.43 Aligned_cols=98 Identities=16% Similarity=0.058 Sum_probs=57.1
Q ss_pred eEEEEEEeCCC-------CCeee-CCCccCCCC--CHHHH-----HHHHHHHHhCcccccCC--CCeeeEEeeccccccc
Q 031268 47 VLVLMISTPNR-------DDLVF-PKGGWEDDE--TVSEA-----ACREALEEAGVRGLLDE--NPLGEWEFRSKSRMNS 109 (162)
Q Consensus 47 ~~vLLv~r~~~-------~~W~l-PgG~ve~gE--t~~ea-----a~REl~EEtGl~~~~~~--~~l~~~~~~~~~~~~~ 109 (162)
.+||+-.|..+ +.+++ -|||+..++ ++.++ +.||+.||.++.-...+ ..+|.+ +.....
T Consensus 72 devliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlI---Ndd~ne- 147 (203)
T COG4112 72 DEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLI---NDDTNE- 147 (203)
T ss_pred CEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeee---cCCCcc-
Confidence 38999988532 33555 399998755 33332 66999999999843331 244443 222111
Q ss_pred CCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhh
Q 031268 110 CNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLW 151 (162)
Q Consensus 110 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~ 151 (162)
-...+...+|+.......-...+.+..+++|+...++.+
T Consensus 148 ---VgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~ 186 (203)
T COG4112 148 ---VGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEK 186 (203)
T ss_pred ---cceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHH
Confidence 112234466776654322223344457899999999876
No 97
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.82 E-value=0.0063 Score=48.01 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=43.8
Q ss_pred eeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEEEeccc
Q 031268 61 VFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE 129 (162)
Q Consensus 61 ~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 129 (162)
++=+|.|+..-||.+-|..|+.||+|+++... .++..+.|........ ...++|.+++.+.
T Consensus 82 elc~g~idke~s~~eia~eev~eecgy~v~~d-~l~hv~~~~~g~~~s~-------sa~~l~y~ei~es 142 (405)
T KOG4432|consen 82 ELCAGLIDKELSPREIASEEVAEECGYRVDPD-DLIHVITFVVGAHQSG-------SAQHLYYAEIDES 142 (405)
T ss_pred eeeccccccccCHHHHhHHHHHHHhCCcCChh-HceEEEEEEeccccCc-------cchheeeeecchh
Confidence 44589999999999999999999999998766 4666677766533221 1345566665543
No 98
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=96.59 E-value=0.0053 Score=44.56 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=43.4
Q ss_pred cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhC
Q 031268 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAG 86 (162)
Q Consensus 19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtG 86 (162)
.++|.+|-+|++-..- .-.+|||++- +...+.+|||.+++||+-.+.+.|-+-|-.|
T Consensus 66 ~gmRrsvegvlivheH----------~lPHvLLLQi-g~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 66 EGMRRSVEGVLIVHEH----------NLPHVLLLQI-GNTFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred hhhhheeeeeEEEeec----------CCCeEEEEee-CCEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 3666666655554332 2468888854 3456899999999999999999999999999
No 99
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.00 E-value=0.034 Score=41.53 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=65.5
Q ss_pred ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCC--------------CccCC--CCCHHHHHHHHHHHH
Q 031268 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPK--------------GGWED--DETVSEAACREALEE 84 (162)
Q Consensus 21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPg--------------G~ve~--gEt~~eaa~REl~EE 84 (162)
.+.+..++.|+.. +++||.+|.. .+-.||+ |.++. +.....||+|-|.=|
T Consensus 51 LHRaFSVFlFns~-------------~~lLlQqRS~-~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~E 116 (225)
T KOG0142|consen 51 LHRAFSVFLFNSK-------------NELLLQQRSD-EKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAE 116 (225)
T ss_pred hhheeeEEEecCc-------------chHHHhhhcc-ccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHh
Confidence 3456667777654 4666666543 3344442 22221 235678999999999
Q ss_pred hCcccccCC----CCeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcc-cccceeEEeeHhHHhhhhcc
Q 031268 85 AGVRGLLDE----NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPE-QANYKRIWVSNNHFLWRKHS 155 (162)
Q Consensus 85 tGl~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~W~~~~ea~~~~~~ 155 (162)
.||.....+ .+++.+.|.......+ +.+.+. |.+-+.......|+ .+..+++|++.+|+.+++..
T Consensus 117 LGIp~e~v~pee~~~ltrihYkA~sdg~w-----GEhEiD-YiL~~~~~~~~nPnpnEv~e~ryvs~eelkel~~~ 186 (225)
T KOG0142|consen 117 LGIPLEEVPPEEFNFLTRIHYKAPSDGIW-----GEHEID-YILFLVKDVTLNPNPNEVSEIRYVSREELKELVAK 186 (225)
T ss_pred hCCCccccCHHHcccceeeeeecCCCCCc-----ccceee-EEEEEeccCCCCCChhhhhHhheecHHHHHHHHhc
Confidence 999865442 3566777766543322 122222 22222222222232 23578999999999998653
No 100
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=95.64 E-value=0.13 Score=39.64 Aligned_cols=103 Identities=16% Similarity=0.278 Sum_probs=59.6
Q ss_pred eEEEEEEeC--CCCCeeeCCCcc-CCCCCHHHHHHHHHHHHhCcccccC---CCCeeeEEeecccccccCCCCCCceEEE
Q 031268 47 VLVLMISTP--NRDDLVFPKGGW-EDDETVSEAACREALEEAGVRGLLD---ENPLGEWEFRSKSRMNSCNSKEGGCRGY 120 (162)
Q Consensus 47 ~~vLLv~r~--~~~~W~lPgG~v-e~gEt~~eaa~REl~EEtGl~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (162)
.-+|||++. ..+.|.||.+.. +++++...+|.|++++-.|=..... ..++|.+.+........ ....-..++
T Consensus 139 ~LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~--e~~~~sk~f 216 (263)
T KOG4548|consen 139 KLYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTT--EEPVSSKVF 216 (263)
T ss_pred eEEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccc--cccccceeE
Confidence 468888854 235799999999 9999999999999999888654322 13444332222211100 010112234
Q ss_pred EEEEEe-cccccCCcccccceeEEeeHhHHhhhh
Q 031268 121 MFALEV-TEELESWPEQANYKRIWVSNNHFLWRK 153 (162)
Q Consensus 121 ~f~~~~-~~~~~~~~~~~~~~~~W~~~~ea~~~~ 153 (162)
+|.+.. ...... ......+.|++-+|+.+.+
T Consensus 217 f~k~~lv~~~~~k--n~n~edfvWvTkdel~e~l 248 (263)
T KOG4548|consen 217 FFKASLVANSNQK--NQNKEDFVWVTKDELGEKL 248 (263)
T ss_pred Eeeeeeccccchh--cccccceEEechHHHhhhc
Confidence 443332 221111 1122458999999998764
No 101
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=95.31 E-value=0.15 Score=39.39 Aligned_cols=102 Identities=19% Similarity=0.123 Sum_probs=65.2
Q ss_pred eEEEEEEeCCC-CCe-----eeCCCccCCCCCHHHHHHHHHHHHhCcccccCC--CCeeeEEeecc-cccccCCCCCCce
Q 031268 47 VLVLMISTPNR-DDL-----VFPKGGWEDDETVSEAACREALEEAGVRGLLDE--NPLGEWEFRSK-SRMNSCNSKEGGC 117 (162)
Q Consensus 47 ~~vLLv~r~~~-~~W-----~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~--~~l~~~~~~~~-~~~~~~~~~~~~~ 117 (162)
.++-+-+|+.. ..| .+-+|++--|-...++|+.|..||+.|...... ...|+.+|-.. ..... ...
T Consensus 148 l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~-----~pe 222 (306)
T KOG4313|consen 148 LCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGL-----FPE 222 (306)
T ss_pred eEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhcc-----Ccc
Confidence 45555555432 335 556899999999999999999999999863221 34555555421 11111 123
Q ss_pred EEEEEEEEeccccc-CCcccccceeEEeeHhHHhhhh
Q 031268 118 RGYMFALEVTEELE-SWPEQANYKRIWVSNNHFLWRK 153 (162)
Q Consensus 118 ~~~~f~~~~~~~~~-~~~~~~~~~~~W~~~~ea~~~~ 153 (162)
.-|+|.+.+....- ...+.+...+.-++++|....+
T Consensus 223 ~qYVfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v~~l 259 (306)
T KOG4313|consen 223 TQYVFDLELPLDFIPQNNDGEVQAFELLTLKDCVERL 259 (306)
T ss_pred ceEEEeccCchhhcCCCCCCceeeEeeecHHHHHHHH
Confidence 67889887765433 3334445678889999988653
No 102
>PRK10880 adenine DNA glycosylase; Provisional
Probab=92.82 E-value=0.97 Score=36.95 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=22.5
Q ss_pred eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcc
Q 031268 47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVR 88 (162)
Q Consensus 47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~ 88 (162)
+++||.+|... |.|+||.. +.. + ..++..|+.|+.
T Consensus 242 ~~~~l~~r~~~gl~~gl~~fP~~--~~~----~-~~~~~~~~~~~~ 280 (350)
T PRK10880 242 DEVWLEQRPPSGLWGGLFCFPQF--ADE----E-ELRQWLAQRGIA 280 (350)
T ss_pred CEEEEEECCccChhhccccCCCC--cch----h-hHHHHHHhcCCc
Confidence 47888888654 56999963 211 1 245666777875
No 103
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=91.73 E-value=0.86 Score=36.30 Aligned_cols=84 Identities=20% Similarity=0.113 Sum_probs=52.5
Q ss_pred eeCCCccCCCCCHHHHHHHHHHHHhCcccccCC-CCeeeEEeecccccccCCCCCCceEEEEEEEEecccc------cCC
Q 031268 61 VFPKGGWEDDETVSEAACREALEEAGVRGLLDE-NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL------ESW 133 (162)
Q Consensus 61 ~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~------~~~ 133 (162)
+|-.|.|+..-|..+-|.||..||+|++..... .....|..-..... .+-.+|.++++... ...
T Consensus 287 ELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG---------~~QTmfy~eVTdA~rsgpGgg~~ 357 (405)
T KOG4432|consen 287 ELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSG---------DTQTMFYVEVTDARRSGPGGGEK 357 (405)
T ss_pred eeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcC---------CeeEEEEEEeehhhccCCCCCcc
Confidence 455789998889999999999999999864321 23333321111111 13455666665432 122
Q ss_pred cccccceeEEeeHhHHhhhh
Q 031268 134 PEQANYKRIWVSNNHFLWRK 153 (162)
Q Consensus 134 ~~~~~~~~~W~~~~ea~~~~ 153 (162)
.+++..+..-+++++|..+.
T Consensus 358 ee~E~IEvv~lsle~a~~~~ 377 (405)
T KOG4432|consen 358 EEDEDIEVVRLSLEDAPSLY 377 (405)
T ss_pred cccceeeEEEechhhhhHHH
Confidence 33445678889999999874
No 104
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=84.01 E-value=2.4 Score=25.31 Aligned_cols=23 Identities=9% Similarity=0.198 Sum_probs=14.9
Q ss_pred EEEEEeCCCCCeeeCCCccCCCC
Q 031268 49 VLMISTPNRDDLVFPKGGWEDDE 71 (162)
Q Consensus 49 vLLv~r~~~~~W~lPgG~ve~gE 71 (162)
+-|+.......|.+|||.+-.+-
T Consensus 13 itl~ys~~~~GWl~Pgg~vi~NP 35 (60)
T PF07026_consen 13 ITLPYSHFKNGWLMPGGKVITNP 35 (60)
T ss_pred EEEEEEeccceeecCCCeeEcCH
Confidence 33333334456999999987653
No 105
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=80.16 E-value=1.9 Score=23.62 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=12.1
Q ss_pred CCCccCCCCCHHHHHHHHHHHHh
Q 031268 63 PKGGWEDDETVSEAACREALEEA 85 (162)
Q Consensus 63 PgG~ve~gEt~~eaa~REl~EEt 85 (162)
-||..-||--|...++||+-||.
T Consensus 14 lggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 14 LGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp ---------S-HHHHHHHHHHHH
T ss_pred hcccCCCCCCCchHHHHHHHHHH
Confidence 37888899999999999999995
No 106
>PF14443 DBC1: DBC1
Probab=74.91 E-value=25 Score=24.43 Aligned_cols=46 Identities=13% Similarity=0.006 Sum_probs=31.1
Q ss_pred ceEEEEEEeCC-----CCCeee--CCCccCCC-CCHHHHHHHHHHHHhCccccc
Q 031268 46 KVLVLMISTPN-----RDDLVF--PKGGWEDD-ETVSEAACREALEEAGVRGLL 91 (162)
Q Consensus 46 ~~~vLLv~r~~-----~~~W~l--PgG~ve~g-Et~~eaa~REl~EEtGl~~~~ 91 (162)
-.++|+.++-+ +|.|.- =||-.+.+ .++..+|+|=+++-|||+...
T Consensus 7 ~lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~ 60 (126)
T PF14443_consen 7 LLKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSN 60 (126)
T ss_pred heeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhh
Confidence 45666665543 356743 35555543 367899999999999999643
No 107
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=46.63 E-value=4.7 Score=32.60 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=29.5
Q ss_pred CCeeeCCCccCCCCCHHHHHHHHHHHHhCccc
Q 031268 58 DDLVFPKGGWEDDETVSEAACREALEEAGVRG 89 (162)
Q Consensus 58 ~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~ 89 (162)
..|.||.|++..||-+..+++|+-.||+|+..
T Consensus 264 e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~ 295 (348)
T KOG2937|consen 264 ENWTFPKGKISRGEKPRDASIRSTFEEPGFPF 295 (348)
T ss_pred ccccCcccccccCCccccchhhhcCCCcCCcc
Confidence 45999999999999999999999999999864
No 108
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=43.71 E-value=87 Score=24.71 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=14.6
Q ss_pred eEEEEEEeCCC----CCeeeCCC
Q 031268 47 VLVLMISTPNR----DDLVFPKG 65 (162)
Q Consensus 47 ~~vLLv~r~~~----~~W~lPgG 65 (162)
+++||.++... |.|+||+-
T Consensus 239 ~~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 239 GEVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred CeEEEEeCCCCchhhccccCCCC
Confidence 48999988653 56999973
No 109
>PF12860 PAS_7: PAS fold
Probab=37.49 E-value=16 Score=24.04 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=26.3
Q ss_pred eEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHH
Q 031268 47 VLVLMISTPNRDDLVFPKGGWEDDETVSEAACR 79 (162)
Q Consensus 47 ~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~R 79 (162)
+++++..++....|.+|...+.+|-+..+.+.+
T Consensus 15 ~rl~~~N~~~~~l~~~~~~~~~~G~~~~~l~~~ 47 (115)
T PF12860_consen 15 GRLVFWNQRFRELFGLPPEMLRPGASFRDLLRR 47 (115)
T ss_pred CeEEeEcHHHHHHhCCCHHHhcCCCCHHHHHHH
Confidence 588888887777799999999899887665543
No 110
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=35.21 E-value=24 Score=28.76 Aligned_cols=25 Identities=28% Similarity=0.150 Sum_probs=20.4
Q ss_pred CccCCCCCHHHHHHHHHHHHhCccc
Q 031268 65 GGWEDDETVSEAACREALEEAGVRG 89 (162)
Q Consensus 65 G~ve~gEt~~eaa~REl~EEtGl~~ 89 (162)
=.|+..+-..+.+.||++||.++-+
T Consensus 407 L~V~~~dLsDe~~MrelReeL~IG~ 431 (466)
T PF09505_consen 407 LGVEPMDLSDEYVMRELREELNIGV 431 (466)
T ss_pred hCCChhhcccHHHHHHHHHhcCcce
Confidence 3577778788899999999998753
No 111
>PF14044 NETI: NETI protein
Probab=34.31 E-value=33 Score=20.36 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=16.2
Q ss_pred ccCCCCCHHHHHHHHHHHHhCcc
Q 031268 66 GWEDDETVSEAACREALEEAGVR 88 (162)
Q Consensus 66 ~ve~gEt~~eaa~REl~EEtGl~ 88 (162)
.|+.+||+.+|+.| +++| |+.
T Consensus 3 eV~enETI~~CL~R-M~~e-GY~ 23 (57)
T PF14044_consen 3 EVEENETISDCLAR-MKKE-GYM 23 (57)
T ss_pred eccCCCcHHHHHHH-HHHc-CCC
Confidence 36889999999998 4544 665
No 112
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=31.52 E-value=2.4e+02 Score=22.36 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=32.9
Q ss_pred ceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHH-HhCcccccCCCCeeeE
Q 031268 46 KVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALE-EAGVRGLLDENPLGEW 99 (162)
Q Consensus 46 ~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~E-EtGl~~~~~~~~l~~~ 99 (162)
+.+||-|.+-. .+|.|-.|+.-.-.++-+|.--| -|+...-.. .++.+|
T Consensus 36 ~p~VLtV~q~~----aLP~GPfep~hrslq~glr~wV~~qT~~plGYi-EQLYTF 85 (322)
T COG4111 36 GPRVLTVRQGA----ALPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYI-EQLYTF 85 (322)
T ss_pred CceEEEecccc----cCCCCCCchHHHHHHHHHHHHHHHHhcCccchH-Hhhhhh
Confidence 57999997654 39999999987666676776554 466664444 344443
No 113
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=28.73 E-value=30 Score=27.65 Aligned_cols=31 Identities=16% Similarity=-0.108 Sum_probs=28.3
Q ss_pred CeeeCCCccCCCCCHHHHHHHHHHHHhCcccc
Q 031268 59 DLVFPKGGWEDDETVSEAACREALEEAGVRGL 90 (162)
Q Consensus 59 ~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~ 90 (162)
.|.. .|..+-++++.+++.|++.++++.-..
T Consensus 56 ~W~~-~Gr~~iwl~l~~~~~~lV~~a~~~gf~ 86 (295)
T KOG0648|consen 56 KWYL-QGRKGIWLKLPEELARLVEEAAKYGFD 86 (295)
T ss_pred HHHH-ccCcccceechHHHHhHHHHHHhcCcE
Confidence 6988 999999999999999999999988643
No 114
>COG1598 Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=25.71 E-value=1.7e+02 Score=17.94 Aligned_cols=24 Identities=29% Similarity=0.287 Sum_probs=16.9
Q ss_pred CCccCCCCCHHHHHHHHHHHHhCcc
Q 031268 64 KGGWEDDETVSEAACREALEEAGVR 88 (162)
Q Consensus 64 gG~ve~gEt~~eaa~REl~EEtGl~ 88 (162)
.|..-.|+|+++|.. +++|=..+-
T Consensus 24 pgc~s~G~T~eea~~-n~~eai~l~ 47 (73)
T COG1598 24 PGCHSQGETLEEALQ-NAKEAIELH 47 (73)
T ss_pred CCccccCCCHHHHHH-HHHHHHHHH
Confidence 678889999999764 455544443
No 115
>PF13014 KH_3: KH domain
Probab=25.07 E-value=53 Score=17.66 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=13.1
Q ss_pred HHHHHHHhCcccccC
Q 031268 78 CREALEEAGVRGLLD 92 (162)
Q Consensus 78 ~REl~EEtGl~~~~~ 92 (162)
++++.++||..+.+.
T Consensus 13 I~~I~~~tg~~I~i~ 27 (43)
T PF13014_consen 13 IKEIREETGAKIQIP 27 (43)
T ss_pred HHHHHHHhCcEEEEC
Confidence 799999999988765
No 116
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=25.03 E-value=29 Score=24.69 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=11.9
Q ss_pred eeEEeeHhHHhhhh
Q 031268 140 KRIWVSNNHFLWRK 153 (162)
Q Consensus 140 ~~~W~~~~ea~~~~ 153 (162)
..+||++++|.+++
T Consensus 30 D~~WmspdqAk~li 43 (144)
T PF09999_consen 30 DRKWMSPDQAKRLI 43 (144)
T ss_pred ecCCCCHHHHHHHH
Confidence 45899999999874
No 117
>PF15533 Toxin_54: Putative toxin 54
Probab=24.59 E-value=84 Score=19.19 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=15.1
Q ss_pred EeCCCCCeeeCCCccCCCCC
Q 031268 53 STPNRDDLVFPKGGWEDDET 72 (162)
Q Consensus 53 ~r~~~~~W~lPgG~ve~gEt 72 (162)
+.+...-|.+|+|...+||+
T Consensus 41 kD~~gni~ik~KGGkG~g~p 60 (66)
T PF15533_consen 41 KDREGNIYIKPKGGKGEGIP 60 (66)
T ss_pred EcCCCCEEEecCCCCCCCcc
Confidence 33445569999999998885
No 118
>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=23.03 E-value=65 Score=19.83 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=18.1
Q ss_pred eCCCccCCCCCHHHHHHH--HHHHHhCccc
Q 031268 62 FPKGGWEDDETVSEAACR--EALEEAGVRG 89 (162)
Q Consensus 62 lPgG~ve~gEt~~eaa~R--El~EEtGl~~ 89 (162)
+|...|..||+++.|+.| -.-+++|+-.
T Consensus 1 M~~v~V~ene~~d~ALrrFKr~~~k~gil~ 30 (67)
T COG0828 1 MPQVKVRENEPLDKALRRFKRKVEKEGILR 30 (67)
T ss_pred CCeeeecCCChHHHHHHHHHHHHHHHHHHH
Confidence 467788899998888763 1224446543
No 119
>PRK13910 DNA glycosylase MutY; Provisional
Probab=22.98 E-value=1.5e+02 Score=23.61 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=13.0
Q ss_pred eEEEEEEeCC---CCCeeeCC
Q 031268 47 VLVLMISTPN---RDDLVFPK 64 (162)
Q Consensus 47 ~~vLLv~r~~---~~~W~lPg 64 (162)
+++||.+|.. .|.|+||.
T Consensus 197 ~~~ll~kr~~~l~~gl~~fP~ 217 (289)
T PRK13910 197 NQIALEKIEQKLYLGMHHFPN 217 (289)
T ss_pred CEEEEEECCCchhcccccCCC
Confidence 3788887743 35699996
No 120
>PF06453 LT-IIB: Type II heat-labile enterotoxin , B subunit (LT-IIB); InterPro: IPR010503 These are B subunits from the type II heat-labile enterotoxin. The B subunits form a pentameric ring, which interacts with one A subunit. Thus, the structural arrangement of type I and type II heat-labile enterotoxins are very similar [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TII_F 1QCB_E 1QB5_D.
Probab=21.80 E-value=74 Score=21.38 Aligned_cols=29 Identities=10% Similarity=0.128 Sum_probs=14.1
Q ss_pred EEEEeCCCCCeeeCCCccCCCCCHHHHHHH
Q 031268 50 LMISTPNRDDLVFPKGGWEDDETVSEAACR 79 (162)
Q Consensus 50 LLv~r~~~~~W~lPgG~ve~gEt~~eaa~R 79 (162)
+.+....++.|-+|||.--| +....+-.|
T Consensus 60 iYv~sstG~~w~Ipgg~~YP-dN~ls~EmR 88 (122)
T PF06453_consen 60 IYVVSSTGGVWFIPGGQDYP-DNYLSNEMR 88 (122)
T ss_dssp EEEEETTS-EEEE---SSTT-HHHHHHHHH
T ss_pred EEEEeCCCCeEEccCCCcCc-hhHhhHHHH
Confidence 44555666789999998443 344444344
Done!