BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031269
(162 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P281|BAHC1_HUMAN BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens
GN=BAHCC1 PE=1 SV=3
Length = 2608
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 21 KTIKPGDC-VLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHG 79
+T++ GDC V + P+ P Y+ +IE + ++ G+N+ V V+W+Y PEE+ G+RQ G
Sbjct: 2482 ETLRVGDCAVFLSAGRPNLP-YIGRIESM-WESWGSNMVVKVKWFYHPEETKLGKRQCDG 2539
Query: 80 SKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKL 112
++ S H D TI KC V + + Y ++
Sbjct: 2540 KNALYQSCHEDENDVQTISHKCQVVAREQYEQM 2572
>sp|Q3UHR0|BAHC1_MOUSE BAH and coiled-coil domain-containing protein 1 OS=Mus musculus
GN=Bahcc1 PE=2 SV=2
Length = 2643
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 21 KTIKPGDC-VLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHG 79
+T++ GDC V + P+ P Y+ +IE + ++ G+N+ V V+W+Y PEE+ G+RQ G
Sbjct: 2517 ETLRIGDCAVFLSAGRPNLP-YIGRIESL-WESWGSNMVVKVKWFYHPEETKLGKRQSDG 2574
Query: 80 SKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKL 112
++ S H D TI KC V + Y ++
Sbjct: 2575 KNALYQSCHEDENDVQTISHKCQVVGREQYEQM 2607
>sp|Q8TBE0|BAHD1_HUMAN Bromo adjacent homology domain-containing 1 protein OS=Homo sapiens
GN=BAHD1 PE=1 SV=2
Length = 780
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 15 TVKSISKTIKPGDCVLMRPSEPSKPS--YVAKIERIESDARGANVKVHVRWYYRPEESIG 72
V+ +TI+ D VL++ S P K S YVAKI + + + + + WYYRPE G
Sbjct: 618 AVERHGETIRVRDTVLLK-SGPRKTSTPYVAKISALWENPESGELMMSLLWYYRPEHLQG 676
Query: 73 GRR-QFHG--SKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDAV 115
GR H EVF S H D S IE KC V +F Y + A+
Sbjct: 677 GRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAM 722
>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1 SV=4
Length = 1634
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 26 GDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKEVFL 85
GD V + P+E + ++ IER+ D+ G ++ W+YRP E+ + KEVF
Sbjct: 961 GDYVYVEPAEANLQPHIVCIERLWEDSAGEKW-LYGCWFYRPNETFHLATRKFLEKEVFK 1019
Query: 86 SDHHDIQSADTIEGKCTVHSFKSYTKL---DAVGNDDFFCRFEYNSSSGAF 133
SD+++ I GKC V K Y KL + D F C Y++ + +F
Sbjct: 1020 SDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSAKTKSF 1070
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 23 IKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKE 82
+K GDCV ++ +P V +IE++ R + + PEE+ + KE
Sbjct: 1158 LKVGDCVFIKSHGLVRPR-VGRIEKVW--VRDGAAYFYGPIFIHPEETEHEPTKMFYKKE 1214
Query: 83 VFLSDHHDIQSADTIEGKCTVHSFKSYTK---LDAVGNDDFFCRFEYNSS 129
VFLS+ + I GKC V SFK + + ND C YN S
Sbjct: 1215 VFLSNLEETCPMSCILGKCAVLSFKDFLSCRPTEIPENDILLCESRYNES 1264
>sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1 PE=1 SV=1
Length = 1689
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 26 GDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKEVFL 85
GD V + P+E + ++ IER+ D+ G ++ W+YRP E+ + KEVF
Sbjct: 961 GDYVYVEPAEANLQPHIVCIERLWEDSAGEKW-LYGCWFYRPNETFHLATRKFLEKEVFK 1019
Query: 86 SDHHDIQSADTIEGKCTVHSFKSYTKL---DAVGNDDFFCRFEYNSSSGAF 133
SD+++ I GKC V K Y KL + D F C Y++ + +F
Sbjct: 1020 SDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSAKTKSF 1070
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 23 IKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKE 82
+K GDCV ++ +P V +IE++ R + + PEE+ + KE
Sbjct: 1158 LKVGDCVFIKSHGLVRPR-VGRIEKVW--VRDGAAYFYGPIFIHPEETEHEPTKMFYKKE 1214
Query: 83 VFLSDHHDIQSADTIEGKCTVHSFKSYTK---LDAVGNDDFFCRFEYNSS 129
VFLS+ + I GKC V SFK + + ND C YN S
Sbjct: 1215 VFLSNLEETCPMTCILGKCAVLSFKDFLSCRPTEIPENDILLCESRYNES 1264
>sp|Q497V6|BAHD1_MOUSE Bromo adjacent homology domain-containing 1 protein OS=Mus musculus
GN=Bahd1 PE=2 SV=1
Length = 772
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/106 (36%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 16 VKSISKTIKPGDCVLMR--PSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGG 73
V+ +TI+ D VL++ P + S P YVAKI + + + + + WYYRPE GG
Sbjct: 611 VERHGETIRVRDTVLLKSGPRKTSTP-YVAKISALWENPESGELMMSLLWYYRPEHLQGG 669
Query: 74 RR-QFHG--SKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDAVG 116
R H EVF S H D S IE KC V +F Y + A+
Sbjct: 670 RSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMA 715
>sp|Q06488|RSC2_YEAST Chromatin structure-remodeling complex subunit RSC2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC2 PE=1 SV=1
Length = 889
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 16/160 (10%)
Query: 8 RRTLESYTVKSISKTIKPGDCVLMR-PSEPSKPSYVAKIERIESDARGANVKVHVRWYYR 66
R L+ V +IS + GD L+R ++P KP V +I R+ G ++ WYYR
Sbjct: 397 RYPLDEVIVNNISYHV--GDWALLRNQNDPQKP-IVGQIFRLWKTPDGKQW-LNACWYYR 452
Query: 67 PEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDAVGNDD------- 119
PE+++ + EV + + + GKC V F Y + GN D
Sbjct: 453 PEQTVHRVDRLFYKNEVMKTGQYRDHLVSNLVGKCYVIHFTRYQR----GNPDMKLEGPL 508
Query: 120 FFCRFEYNSSSGAFNPDRVAVYCKCEMPYNPDDLMVQCEG 159
F C F YN S FN R C E + D+ + G
Sbjct: 509 FVCEFRYNESDKIFNKIRTWKACLPEEIRDLDEATIPVNG 548
>sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM1 PE=1 SV=1
Length = 1633
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 26 GDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKEVFL 85
GD V + P+E + ++ IER+ D+ G ++ W+YRP E+ + KEVF
Sbjct: 959 GDYVYVEPAEANLQPHIVCIERLWEDSAGEKW-LYGCWFYRPNETFHLATRKFLEKEVFK 1017
Query: 86 SDHHDIQSADTIEGKCTVHSFKSYTKL---DAVGNDDFFCRFEYNSSSGAF 133
SD+++ I GKC V K Y KL + D + C Y++ + +F
Sbjct: 1018 SDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSF 1068
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 23 IKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKE 82
+K GDCV ++ +P V +IE++ R + PEE+ + KE
Sbjct: 1157 LKVGDCVFIKSHGLVRPR-VGRIEKMW--VRDGAAYFFGPIFIHPEETEHEPTKMFYKKE 1213
Query: 83 VFLSDHHDIQSADTIEGKCTVHSFKSYT---KLDAVGNDDFFCRFEYNSS 129
VFLS+ + I GKC V SFK + + ND F C YN S
Sbjct: 1214 VFLSNLEETCPMSCILGKCAVLSFKDFLCCRPTEISENDVFLCESRYNES 1263
>sp|P53236|RSC1_YEAST Chromatin structure-remodeling complex subunit RSC1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC1 PE=1 SV=1
Length = 928
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Query: 26 GDCVLMR-PSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKEVF 84
GD VL+ P++ +KP V +I R+ S G N ++ WY+RPE+++ + EV
Sbjct: 373 GDWVLLHNPNDINKP-IVGQIFRLWSTTDG-NKWLNACWYFRPEQTVHRVDRLFYKNEVM 430
Query: 85 LSDHHDIQSADTIEGKCTVHSFKSYTKLD---AVGNDDFFCRFEYNSSSGAFNPDRVAVY 141
+ + I+GKC V F + + D V F C F YN S FN R
Sbjct: 431 KTGQYRDHPIQDIKGKCYVIHFTRFQRGDPSTKVNGPQFVCEFRYNESDKVFNKIRTWKA 490
Query: 142 CKCEMPYNPDDLMVQCEG 159
C E + D+ + G
Sbjct: 491 CLPEELRDQDEPTIPVNG 508
>sp|Q3LHL9|WGE_DROME Protein winged eye OS=Drosophila melanogaster GN=wge PE=1 SV=1
Length = 1658
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 15 TVKSISKTIKPGD-CVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIG- 72
T+K +TI GD V + P +P Y+ +IE + G V V V W+Y PEE+ G
Sbjct: 1504 TIKRGKETITVGDSAVFLSTGRPDRP-YIGRIESMWETTTGNKV-VRVAWFYHPEETTGC 1561
Query: 73 GRRQFHGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSS--- 129
+ +F G+ +F S H D TI +C V F SY + + + ++ N +
Sbjct: 1562 PKLKFPGA--LFESPHEDENDVQTISHRCEVLQFGSYFEKFGADSKQYQSIYDNNDTYYL 1619
Query: 130 SGAFNP 135
+G +NP
Sbjct: 1620 AGHYNP 1625
>sp|Q10077|SNT2_SCHPO Lid2 complex component snt2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=snt2 PE=4 SV=1
Length = 1131
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 23 IKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVK----VHVRWYYRPEESIGGRRQFH 78
I+P D VL+ P +P +A+I E + V + WY+RP + +R
Sbjct: 105 IQPNDFVLVNSPFPGEPFQIARIISFEKSRPCVSTNLYDSVRLNWYFRPRDI---QRHLT 161
Query: 79 GSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSSGAFNPDRV 138
++ +F S H DI + +++ KCTV LD EY S + ++ DR+
Sbjct: 162 DTRLLFASMHSDIYNIGSVQEKCTVKHRSQIENLD-----------EYKSQAKSYYFDRL 210
>sp|Q27746|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI OS=Paracentrotus lividus
GN=DNMT PE=2 SV=1
Length = 1612
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 23 IKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKE 82
I+ GDCVL+ P +P+KP ++A++ + +++G + H +W+ E++ G + E
Sbjct: 745 IEIGDCVLIHPDDPTKPLFMARVIYMWQESQG-EMMFHAQWFVYGSETVLG--ETSDPLE 801
Query: 83 VFLSDHHDIQSADTIEGKCTV 103
VF D ++ KCTV
Sbjct: 802 VFPIDECQDTYLGSVNAKCTV 822
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 38 KPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGS--KEVFLSDHHDIQSAD 95
+P + KI I + + V++ V YRPE++ GR + + ++ S+ + +
Sbjct: 984 EPFRIGKIISIYTTKSNSTVRLRVNKMYRPEDTHKGRTAAYQADLNVLYWSEEEAVTELE 1043
Query: 96 TIEGKCTVHSFK----SYTKLDAVGNDDFFCRFEYNSSSGAF 133
++GKC+V + S + A G F+ R Y+S F
Sbjct: 1044 VVQGKCSVVCAEDLNVSTDEYSAGGPHKFYFREAYDSERKCF 1085
>sp|Q92072|DNMT1_CHICK DNA (cytosine-5)-methyltransferase 1 OS=Gallus gallus GN=DNMT1 PE=1
SV=1
Length = 1537
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 20 SKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHG 79
S+T++ GDCV + P +P+KP Y+A++ + D+ G H W+ +++ G
Sbjct: 666 SETLEVGDCVSVSPDDPTKPLYLARVTAMWEDSSGQ--MFHAHWFCPGSDTVLGATS--D 721
Query: 80 SKEVFLSDHHDIQSADTIEGKCTV 103
E+FL D + I GK V
Sbjct: 722 PLELFLVDECEDMQLSYIHGKVNV 745
>sp|O74964|RSC1_SCHPO Chromatin structure-remodeling complex subunit rsc1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rsc1 PE=1 SV=1
Length = 803
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 2 AKPKAPRRTLESYTVKSISKTI-KPGDCVLMR-PSEPSKPSYVAKIERIESDARGANVKV 59
A P+ P+ ++ SI T+ GD VL+R P++ SKP V++I RI N V
Sbjct: 333 ASPQLPKNDIQPAV--SIDGTLLNVGDWVLIRNPADSSKP-IVSQIYRIWKSDDDINY-V 388
Query: 60 HVRWYYRPEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDAVG--- 116
V WY RPE+++ EVF + + I G+C V Y + G
Sbjct: 389 TVCWYLRPEQTVHRADAVFYENEVFKTSLYRDHPVSEIVGRCFVMYITRYIRGRPKGIRS 448
Query: 117 NDDFFCRFEYNSSSGAFN 134
F C YN + F+
Sbjct: 449 TPVFVCESRYNDDTKQFS 466
>sp|B1Q3J6|DNM1B_ORYSJ DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica
GN=MET1B PE=2 SV=1
Length = 1529
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 55 ANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDA 114
A+ K+ VR +YRP++ + +EV+ S++ D IEGKC V K+D
Sbjct: 965 ASTKISVRRFYRPDDISSAKAYVSDIREVYYSENIVKVPVDMIEGKCEVKK-----KIDI 1019
Query: 115 VGND-------DFFCRFEYNSSSGAF 133
+D +FFC Y+ ++GA
Sbjct: 1020 SNSDVPVMVEHEFFCEHFYDPATGAL 1045
>sp|O15417|TNC18_HUMAN Trinucleotide repeat-containing gene 18 protein OS=Homo sapiens
GN=TNRC18 PE=1 SV=3
Length = 2968
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 20/110 (18%)
Query: 21 KTIKPGDC-VLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHG 79
+ I+ GDC V + P+ P Y+ +I+ + ++ G N+ V V+W+Y PEE+ G +QFH
Sbjct: 2817 EMIRIGDCAVFLSAGRPNLP-YIGRIQSM-WESWGNNMVVRVKWFYHPEETSPG-KQFHQ 2873
Query: 80 SKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSS 129
+ H D +S+ ++ V S + DF R Y SS
Sbjct: 2874 GQ------HWDQKSSRSLPAALRVSSQRK----------DFMERALYQSS 2907
>sp|Q80WC3|TNC18_MOUSE Trinucleotide repeat-containing gene 18 protein OS=Mus musculus
GN=Tnrc18 PE=1 SV=2
Length = 2878
Score = 38.1 bits (87), Expect = 0.025, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 30/119 (25%)
Query: 21 KTIKPGDC-VLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHG 79
+ I+ GDC V + P+ P Y+ +I+ + ++ G N+ V V+W+Y PEE+ G +QFH
Sbjct: 2727 EMIRIGDCAVFLSAGRPNLP-YIGRIQSM-WESWGNNMVVRVKWFYHPEETSPG-KQFHE 2783
Query: 80 --------------------------SKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKL 112
+ ++ S H D T+ KC V + Y ++
Sbjct: 2784 GQHWDQKSGHSLPAALRASSQRKDFMERALYQSSHVDENDVQTVSHKCLVVGLEQYEQM 2842
>sp|Q9Z330|DNMT1_RAT DNA (cytosine-5)-methyltransferase 1 OS=Rattus norvegicus GN=Dnmt1
PE=1 SV=2
Length = 1622
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 14 YTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGG 73
+ V +T++ GDCV + P +PSKP Y+A++ + D G H W+ +++ G
Sbjct: 752 WKVSIDEETLEVGDCVSVIPDDPSKPLYLARVTALWEDKNGQ--MFHAHWFCAGTDTVLG 809
>sp|Q94F88|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana
GN=CMT3 PE=1 SV=2
Length = 839
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 54 GANVKVH--VRWYYRPEESIGGRRQFH---GSKEVFLSDHHDIQSADTIEGKCTVHSF-- 106
GAN K++ RW+YRP +++ ++F K VF S+ D +E K +
Sbjct: 137 GANGKLYFTARWFYRPSDTV--MKEFEILIKKKRVFFSEIQDTNELGLLEKKLNILMIPL 194
Query: 107 --KSYTKLDAVGNDDFFCRFEY 126
+ + A N DFFC Y
Sbjct: 195 NENTKETIPATENCDFFCDMNY 216
>sp|Q24K09|DNMT1_BOVIN DNA (cytosine-5)-methyltransferase 1 OS=Bos taurus GN=DNMT1 PE=2
SV=1
Length = 1611
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 20 SKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHG 79
S+T++ GDCV + P + SKP Y+A++ + D+ + H W+ +++ G
Sbjct: 751 SETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQM-FHAHWFCAGTDTVLG--ATSD 807
Query: 80 SKEVFLSDHHDIQSADTIEGKCTV 103
E+FL D + I K V
Sbjct: 808 PLELFLVDECEDMQLSYIHSKVQV 831
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 55 ANVKVHVRWYYRPEESIGGR-RQFHGS-KEVFLSDHHDIQSADTIEGKCTVHSFKSYTK- 111
++K+ V +YRPE + +H ++ SD + ++G+CTV + +
Sbjct: 1009 TDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPQC 1068
Query: 112 ---LDAVGNDDFFCRFEYNSSSGAF 133
A G D F+ YN+ S +F
Sbjct: 1069 LQDFSAGGPDRFYFLEAYNAKSKSF 1093
>sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1
SV=2
Length = 1616
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 20 SKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHG 79
++T++ GDCV + P + SKP Y+A++ + D+ + H W+ +++ G
Sbjct: 754 AETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQM-FHAHWFCAGTDTVLG--ATSD 810
Query: 80 SKEVFLSDHHDIQSADTIEGKCTV 103
E+FL D + I K V
Sbjct: 811 PLELFLVDECEDMQLSYIHSKVKV 834
>sp|E6ZGB4|PHF2_DICLA Lysine-specific demethylase phf2 OS=Dicentrarchus labrax GN=phf2
PE=3 SV=1
Length = 1081
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 138 VAVYCKCEMPYNPDDLMVQCEGCSD 162
V VYC C +PY+ M++C+ C D
Sbjct: 4 VPVYCICRLPYDVTQFMIECDACKD 28
>sp|Q6P949|PHF2_DANRE Lysine-specific demethylase phf2 OS=Danio rerio GN=phf2 PE=2 SV=3
Length = 1063
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 138 VAVYCKCEMPYNPDDLMVQCEGCSD 162
V VYC C +PY+ M++C+ C D
Sbjct: 4 VPVYCICRLPYDVTQFMIECDACKD 28
>sp|Q80TZ9|RERE_MOUSE Arginine-glutamic acid dipeptide repeats protein OS=Mus musculus
GN=Rere PE=1 SV=3
Length = 1558
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 25 PGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYR----PE------------ 68
P C L P P P ++++ R ++ ++ ++V+WYYR P+
Sbjct: 150 PPACSL--PVAPQPPQHLSEAGRGPGGSKRDHLLMNVKWYYRQSEVPDSVYQHLVQDRHN 207
Query: 69 ESIGGRR-----QFHGSKEVFLSDHHDIQSADTIEGKCTVHSFKSY--TKLDAVGNDDFF 121
E+ GR ++E+F+SD+ D A + GKC + F + D FF
Sbjct: 208 ENDSGRELVITDPVIKNRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFKARVDSFF 267
Query: 122 CRFEYNSSSGAFN 134
YN + N
Sbjct: 268 YILGYNPETRRLN 280
>sp|O75151|PHF2_HUMAN Lysine-specific demethylase PHF2 OS=Homo sapiens GN=PHF2 PE=1 SV=4
Length = 1096
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 138 VAVYCKCEMPYNPDDLMVQCEGCSD 162
V VYC C +PY+ M++C+ C D
Sbjct: 4 VPVYCVCRLPYDVTRFMIECDACKD 28
>sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana GN=DMT1
PE=1 SV=1
Length = 1534
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 45 IERIESDARGANV---KVHVRWYYRPEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKC 101
+E + ++R A++ V VR +YRPE+ + +E++ S + +EGKC
Sbjct: 952 LEIVPKESRKADLGSFDVKVRRFYRPEDVSAEKAYASDIQELYFSQDTVVLPPGALEGKC 1011
Query: 102 TVHSFKSYTKLD---AVGNDDFFCRFEYNSSSGAF 133
V KS L + + FFC +++S G+
Sbjct: 1012 EVRK-KSDMPLSREYPISDHIFFCDLFFDTSKGSL 1045
>sp|Q9WTU0|PHF2_MOUSE Lysine-specific demethylase PHF2 OS=Mus musculus GN=Phf2 PE=1 SV=2
Length = 1096
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 138 VAVYCKCEMPYNPDDLMVQCEGCSD 162
V VYC C +PY+ M++C+ C D
Sbjct: 4 VPVYCVCRLPYDVTRFMIECDACKD 28
>sp|Q9UPP1|PHF8_HUMAN Histone lysine demethylase PHF8 OS=Homo sapiens GN=PHF8 PE=1 SV=3
Length = 1060
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 138 VAVYCKCEMPYNPDDLMVQCEGCSD 162
V VYC C +PY+ M++C+ C D
Sbjct: 40 VPVYCLCRLPYDVTRFMIECDMCQD 64
>sp|Q80TJ7|PHF8_MOUSE Histone lysine demethylase PHF8 OS=Mus musculus GN=Phf8 PE=1 SV=2
Length = 1023
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 138 VAVYCKCEMPYNPDDLMVQCEGCSD 162
V VYC C +PY+ M++C+ C D
Sbjct: 4 VPVYCLCRLPYDVTRFMIECDMCQD 28
>sp|P13864|DNMT1_MOUSE DNA (cytosine-5)-methyltransferase 1 OS=Mus musculus GN=Dnmt1 PE=1
SV=5
Length = 1620
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGG 73
+ ++ GDCV + P + SKP Y+A++ + D G + H W+ +++ G
Sbjct: 758 EMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNG-QMMFHAHWFCAGTDTVLG 809
>sp|P0CH95|PHF8_DANRE Histone lysine demethylase PHF8 OS=Danio rerio GN=phf8 PE=1 SV=1
Length = 1032
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 138 VAVYCKCEMPYNPDDLMVQCEGCSD 162
V VYC C +PY+ M++C+ C D
Sbjct: 4 VPVYCLCRLPYDVTRFMIECDVCQD 28
>sp|Q7Y1I7|DNM1A_ORYSJ DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica
GN=MET1A PE=2 SV=1
Length = 1527
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 50 SDARGAN---VKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKCTVHSF 106
+ +R AN KV VR +YRP++ + +EV+ S+ IEGKC V
Sbjct: 957 AGSRKANPESTKVKVRRFYRPDDISSTKAYSSDIREVYYSEDIISVPVVMIEGKCEVRLK 1016
Query: 107 KSY--TKLDAVGNDDFFCRFEYNSSSGAF 133
+ L AV F C + Y+ ++GA
Sbjct: 1017 DDLPNSDLPAVVEHVFCCEYLYDPANGAL 1045
>sp|Q9P2R6|RERE_HUMAN Arginine-glutamic acid dipeptide repeats protein OS=Homo sapiens
GN=RERE PE=1 SV=2
Length = 1566
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 25/133 (18%)
Query: 25 PGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYR----PE------------ 68
P C L S+P P ++++ R ++ ++ ++V+WYYR P+
Sbjct: 150 PPACSLPVASQP--PQHLSEAGRGPVGSKRDHLLMNVKWYYRQSEVPDSVYQHLVQDRHN 207
Query: 69 ESIGGRR-----QFHGSKEVFLSDHHDIQSADTIEGKCTVHSFKSY--TKLDAVGNDDFF 121
E+ GR ++E+F+SD+ D A + GKC + F + D FF
Sbjct: 208 ENDSGRELVITDPVIKNRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFKARVDSFF 267
Query: 122 CRFEYNSSSGAFN 134
YN + N
Sbjct: 268 YILGYNPETRRLN 280
>sp|Q62901|RERE_RAT Arginine-glutamic acid dipeptide repeats protein OS=Rattus
norvegicus GN=Rere PE=2 SV=2
Length = 1559
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 25/133 (18%)
Query: 25 PGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYR----PE------------ 68
P C L S+P P ++++ R ++ ++ ++V+WYYR P+
Sbjct: 149 PPACSLPVASQP--PQHLSEAGRGPVGSKRDHLLMNVKWYYRQSEVPDSVYQHLVQDRHN 206
Query: 69 ESIGGRR-----QFHGSKEVFLSDHHDIQSADTIEGKCTVHSFKSY--TKLDAVGNDDFF 121
E+ GR ++E+F+SD+ D A + GKC + F + D FF
Sbjct: 207 ENDSGRELVITDPVIKNRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFKARVDSFF 266
Query: 122 CRFEYNSSSGAFN 134
YN + N
Sbjct: 267 YILGYNPETRRLN 279
>sp|O49139|CMT1_ARATH Putative DNA (cytosine-5)-methyltransferase CMT1 OS=Arabidopsis
thaliana GN=CMT1 PE=5 SV=2
Length = 791
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 36 PSKPSYVAK-IERIESDARGANVKVHVRWYYRPEESIGGR-RQFHGSKEVFLSDHHDIQS 93
P K ++AK IE E+D + RWYYRPE+++ R K VFLS+ +
Sbjct: 93 PGKLKFIAKVIELFEADDGVPYCRF--RWYYRPEDTLIERFSHLVQPKRVFLSNDENDNP 150
Query: 94 ADTIEGKCTV 103
I K +
Sbjct: 151 LTCIWSKVNI 160
>sp|Q3UWM4|KDM7_MOUSE Lysine-specific demethylase 7 OS=Mus musculus GN=Jhdm1d PE=2 SV=2
Length = 940
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 140 VYCKCEMPYNPDDLMVQCEGCSD 162
VYC C PY+ + M++C+ C D
Sbjct: 38 VYCVCRQPYDVNRFMIECDVCKD 60
>sp|Q6ZMT4|KDM7_HUMAN Lysine-specific demethylase 7 OS=Homo sapiens GN=JHDM1D PE=1 SV=2
Length = 941
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 140 VYCKCEMPYNPDDLMVQCEGCSD 162
VYC C PY+ + M++C+ C D
Sbjct: 38 VYCVCRQPYDVNRFMIECDICKD 60
>sp|P53127|SNT2_YEAST SANT domain-containing protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNT2 PE=1 SV=1
Length = 1403
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 17/100 (17%)
Query: 20 SKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANV----------------KVHVRW 63
S + D + M +P YV ++ S +N +V + W
Sbjct: 120 SVLLSANDTIYMISEPAGEPYYVGRVVNFVSKPEFSNTIHEAIKTTSVFPAKFFQVRMNW 179
Query: 64 YYRPEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKCTV 103
+YRP + I + V+ S H DI + GKC++
Sbjct: 180 FYRPRD-IQEHVNTFNPRLVYASLHQDICPISSYRGKCSI 218
>sp|Q08D35|KDM7_XENTR Lysine-specific demethylase 7 OS=Xenopus tropicalis GN=jhdm1d PE=2
SV=1
Length = 922
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 140 VYCKCEMPYNPDDLMVQCEGCSD 162
VYC C PY+ M++C+ C D
Sbjct: 7 VYCVCRQPYDVSRFMIECDICKD 29
>sp|Q5FQ31|SYC_GLUOX Cysteine--tRNA ligase OS=Gluconobacter oxydans (strain 621H)
GN=cysS PE=3 SV=1
Length = 452
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 25 PGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKEVF 84
PGD VL +PSEP P + + R H+ +G HG +
Sbjct: 184 PGDFVLWKPSEPDLPGWDSPYGR-------GRPGWHIECSAMSHRYLGESFDIHGGGDDL 236
Query: 85 LSDHHDIQSADTI----EGKCTVH 104
L HH+ + A ++ GK H
Sbjct: 237 LFPHHENERAQSMCCYPHGKFATH 260
>sp|Q5RHD1|KDM7A_DANRE Lysine-specific demethylase 7A OS=Danio rerio GN=jhdm1da PE=2 SV=2
Length = 875
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 140 VYCKCEMPYNPDDLMVQCEGCSD 162
+YC C PY+ + M++C+ C D
Sbjct: 6 LYCVCRQPYDVNRFMIECDICKD 28
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,355,493
Number of Sequences: 539616
Number of extensions: 2485280
Number of successful extensions: 4901
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 4836
Number of HSP's gapped (non-prelim): 75
length of query: 162
length of database: 191,569,459
effective HSP length: 108
effective length of query: 54
effective length of database: 133,290,931
effective search space: 7197710274
effective search space used: 7197710274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)