Query 031269
Match_columns 162
No_of_seqs 127 out of 886
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 18:42:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w4s_A Polybromo, polybromo 1 100.0 1.4E-37 4.8E-42 230.9 10.3 137 2-141 8-147 (174)
2 3swr_A DNA (cytosine-5)-methyl 100.0 1.3E-28 4.3E-33 221.0 14.6 128 3-135 141-280 (1002)
3 3av4_A DNA (cytosine-5)-methyl 99.9 6E-27 2.1E-31 214.4 15.3 128 3-135 452-592 (1330)
4 4dov_A ORC1, origin recognitio 99.9 5.3E-25 1.8E-29 158.9 16.0 125 8-135 21-159 (163)
5 3swr_A DNA (cytosine-5)-methyl 99.9 5.6E-22 1.9E-26 178.1 14.3 128 5-134 319-499 (1002)
6 4ft4_B DNA (cytosine-5)-methyl 99.9 4.6E-22 1.6E-26 175.9 11.0 126 6-135 43-179 (784)
7 3av4_A DNA (cytosine-5)-methyl 99.8 7.9E-21 2.7E-25 174.2 12.5 127 6-134 632-810 (1330)
8 2fl7_A Regulatory protein SIR3 99.7 2.4E-17 8.2E-22 125.4 10.5 128 14-142 44-196 (232)
9 1m4z_A Origin recognition comp 99.7 3E-17 1E-21 125.3 10.7 128 14-142 44-196 (238)
10 1wep_A PHF8; structural genomi 97.7 1.7E-05 5.8E-10 50.6 2.8 33 130-162 3-35 (79)
11 3kqi_A GRC5, PHD finger protei 97.2 0.00013 4.4E-09 46.0 1.8 27 136-162 7-33 (75)
12 1we9_A PHD finger family prote 96.8 0.00069 2.3E-08 41.1 2.5 25 138-162 5-30 (64)
13 2kgg_A Histone demethylase jar 96.5 0.0011 3.8E-08 38.6 2.0 22 141-162 5-27 (52)
14 1wee_A PHD finger family prote 96.5 0.0011 3.9E-08 41.2 2.1 26 136-161 13-38 (72)
15 2vpb_A Hpygo1, pygopus homolog 96.5 0.0011 3.7E-08 40.6 1.7 24 139-162 9-33 (65)
16 3o7a_A PHD finger protein 13 v 96.4 0.0014 4.7E-08 38.2 1.8 23 139-162 4-26 (52)
17 1wem_A Death associated transc 96.2 0.0024 8.3E-08 40.1 2.3 26 136-162 13-38 (76)
18 3o70_A PHD finger protein 13; 96.0 0.0038 1.3E-07 38.5 2.3 25 137-162 17-41 (68)
19 3kv5_D JMJC domain-containing 95.5 0.0051 1.7E-07 51.7 1.9 28 135-162 33-60 (488)
20 1wew_A DNA-binding family prot 94.6 0.022 7.5E-07 35.8 2.6 25 137-162 14-40 (78)
21 1x4i_A Inhibitor of growth pro 91.8 0.08 2.7E-06 32.6 1.9 22 138-161 5-26 (70)
22 2k16_A Transcription initiatio 89.4 0.17 5.7E-06 31.3 1.8 23 139-162 18-41 (75)
23 2jmi_A Protein YNG1, ING1 homo 88.9 0.18 6.1E-06 32.6 1.7 23 137-161 24-46 (90)
24 2rsd_A E3 SUMO-protein ligase 88.7 0.27 9.1E-06 29.8 2.4 23 138-161 9-33 (68)
25 2g6q_A Inhibitor of growth pro 88.5 0.13 4.5E-06 30.8 0.8 22 138-161 10-31 (62)
26 2vnf_A ING 4, P29ING4, inhibit 87.8 0.16 5.6E-06 30.1 0.9 21 138-160 9-29 (60)
27 2lv9_A Histone-lysine N-methyl 87.6 0.24 8.4E-06 32.3 1.8 23 139-162 28-50 (98)
28 3c6w_A P28ING5, inhibitor of g 86.9 0.21 7.2E-06 29.5 1.1 23 137-161 7-31 (59)
29 1wen_A Inhibitor of growth fam 86.1 0.36 1.2E-05 29.6 1.9 23 137-161 14-38 (71)
30 1weu_A Inhibitor of growth fam 84.2 0.37 1.3E-05 31.1 1.3 21 137-159 34-54 (91)
31 4hcz_A PHD finger protein 1; p 77.7 5.4 0.00019 23.3 4.6 29 22-52 3-31 (58)
32 3pur_A Lysine-specific demethy 73.1 1.7 6E-05 36.7 2.4 15 148-162 52-66 (528)
33 2m0o_A PHD finger protein 1; t 72.8 3.3 0.00011 25.7 3.0 29 22-52 26-54 (79)
34 2gfu_A DNA mismatch repair pro 72.7 2.2 7.6E-05 29.2 2.5 44 21-66 21-69 (134)
35 2eqj_A Metal-response element- 72.3 8 0.00027 23.3 4.6 29 22-52 13-41 (66)
36 2ro0_A Histone acetyltransfera 70.9 9.5 0.00033 24.4 5.0 29 22-53 23-51 (92)
37 2a7y_A Hypothetical protein RV 69.8 5.9 0.0002 24.9 3.7 39 24-64 7-45 (83)
38 3llr_A DNA (cytosine-5)-methyl 67.6 4.7 0.00016 28.4 3.3 44 21-66 15-60 (154)
39 2xk0_A Polycomb protein PCL; t 67.1 7.7 0.00026 23.5 3.7 26 22-49 15-40 (69)
40 2l7p_A Histone-lysine N-methyl 67.0 3.2 0.00011 27.2 2.1 18 145-162 19-36 (100)
41 3zzs_A Transcription attenuati 66.4 8.2 0.00028 22.8 3.6 48 59-106 13-60 (65)
42 1ri0_A Hepatoma-derived growth 61.5 4.2 0.00014 26.9 2.0 42 21-64 18-60 (110)
43 2e5p_A Protein PHF1, PHD finge 61.1 24 0.00082 21.2 5.2 30 21-52 8-37 (68)
44 4fu6_A PC4 and SFRS1-interacti 58.7 7 0.00024 27.2 2.8 43 21-65 21-64 (153)
45 2l8d_A Lamin-B receptor; DNA b 57.6 12 0.00041 22.4 3.3 28 22-50 9-36 (66)
46 3qby_A Hepatoma-derived growth 57.2 8.5 0.00029 24.6 2.8 42 21-64 4-46 (94)
47 3zte_A Tryptophan operon RNA-b 56.8 12 0.0004 23.0 3.2 48 59-106 21-68 (78)
48 1nz9_A Transcription antitermi 55.7 13 0.00043 21.2 3.2 42 22-67 4-45 (58)
49 1o5u_A Novel thermotoga mariti 55.3 13 0.00045 23.7 3.6 22 14-35 62-84 (101)
50 1gtf_A Trp RNA-binding attenua 55.3 13 0.00044 22.4 3.2 48 59-106 17-64 (74)
51 3bcw_A Uncharacterized protein 54.9 14 0.00049 24.6 3.8 22 15-36 82-104 (123)
52 1khc_A DNA cytosine-5 methyltr 54.6 7.4 0.00025 27.1 2.4 43 21-65 10-54 (147)
53 2dig_A Lamin-B receptor; tudor 53.7 16 0.00054 22.0 3.3 28 22-50 12-39 (68)
54 2e6z_A Transcription elongatio 53.6 7.9 0.00027 22.5 2.0 40 21-66 6-45 (59)
55 2rnz_A Histone acetyltransfera 49.1 33 0.0011 22.0 4.6 28 22-52 25-52 (94)
56 3p8d_A Medulloblastoma antigen 48.3 20 0.00069 21.5 3.3 37 22-65 6-42 (67)
57 2opk_A Hypothetical protein; p 48.0 15 0.0005 23.7 2.9 22 14-35 66-89 (112)
58 2daq_A WHSC1L1 protein, isofor 47.8 9.6 0.00033 24.9 2.0 46 18-65 4-55 (110)
59 3lwc_A Uncharacterized protein 47.2 14 0.00049 24.2 2.8 22 14-35 72-93 (119)
60 1f62_A Transcription factor WS 45.2 12 0.00042 20.6 1.9 19 143-162 5-23 (51)
61 4axo_A EUTQ, ethanolamine util 45.1 15 0.00051 25.6 2.7 22 14-35 97-118 (151)
62 2lo3_A SAGA-associated factor 45.1 19 0.00065 19.6 2.5 18 145-162 8-25 (44)
63 2l89_A PWWP domain-containing 44.6 16 0.00055 23.9 2.7 43 21-65 4-52 (108)
64 1wgs_A MYST histone acetyltran 43.7 45 0.0015 22.6 5.0 30 21-52 11-40 (133)
65 2zjr_R 50S ribosomal protein L 43.6 10 0.00035 25.3 1.6 29 22-52 15-43 (115)
66 2e5q_A PHD finger protein 19; 42.6 20 0.00069 21.2 2.6 29 21-51 6-34 (63)
67 2pyt_A Ethanolamine utilizatio 40.8 19 0.00066 24.2 2.7 22 14-35 88-109 (133)
68 1vq8_T 50S ribosomal protein L 40.0 31 0.0011 23.1 3.6 30 21-52 41-70 (120)
69 2ozj_A Cupin 2, conserved barr 38.8 27 0.00093 22.0 3.1 23 14-36 71-93 (114)
70 3p8b_B Transcription antitermi 38.2 32 0.0011 23.6 3.6 42 22-67 91-132 (152)
71 2f5k_A MORF-related gene 15 is 37.3 52 0.0018 21.3 4.2 28 22-52 22-49 (102)
72 3j21_U 50S ribosomal protein L 37.2 41 0.0014 22.6 3.8 30 21-52 44-73 (121)
73 2do3_A Transcription elongatio 36.6 32 0.0011 20.8 2.9 29 21-51 16-44 (69)
74 2oqk_A Putative translation in 36.2 28 0.00097 23.1 2.9 27 22-50 70-96 (117)
75 3qii_A PHD finger protein 20; 35.5 56 0.0019 20.5 4.0 37 21-64 20-56 (85)
76 2vpv_A Protein MIF2, MIF2P; nu 34.9 26 0.0009 24.8 2.7 22 14-35 123-144 (166)
77 3v2d_Y 50S ribosomal protein L 34.7 40 0.0014 22.2 3.4 29 22-52 6-34 (110)
78 1v70_A Probable antibiotics sy 34.3 32 0.0011 20.8 2.8 21 15-35 63-83 (105)
79 2ku3_A Bromodomain-containing 33.6 26 0.00089 21.1 2.2 25 138-162 16-41 (71)
80 4h7l_A Uncharacterized protein 33.2 19 0.00066 25.3 1.8 22 14-35 81-102 (157)
81 2j5u_A MREC protein; bacterial 32.2 1.5E+02 0.0053 22.1 6.9 45 22-66 169-215 (255)
82 4i4a_A Similar to unknown prot 32.1 97 0.0033 19.6 5.2 22 14-35 67-88 (128)
83 3m9q_A Protein MALE-specific l 32.1 1E+02 0.0035 19.9 5.0 37 16-52 13-51 (101)
84 3fjs_A Uncharacterized protein 32.0 28 0.00096 22.3 2.3 22 14-35 69-90 (114)
85 2i45_A Hypothetical protein; n 32.0 32 0.0011 21.4 2.6 23 14-36 61-84 (107)
86 2eko_A Histone acetyltransfera 31.9 45 0.0015 21.0 3.2 41 22-62 9-51 (87)
87 2b8m_A Hypothetical protein MJ 31.6 46 0.0016 21.0 3.4 22 14-35 60-82 (117)
88 2pfw_A Cupin 2, conserved barr 31.5 37 0.0012 21.3 2.8 22 14-35 67-88 (116)
89 3h8z_A FragIle X mental retard 31.5 50 0.0017 22.3 3.6 28 22-49 60-90 (128)
90 4a4f_A SurviVal of motor neuro 30.7 80 0.0027 18.2 4.8 30 21-51 7-36 (64)
91 2zkr_t 60S ribosomal protein L 30.6 43 0.0015 23.2 3.1 30 21-52 47-77 (145)
92 3r8s_U 50S ribosomal protein L 30.3 48 0.0016 21.5 3.2 28 22-51 3-30 (102)
93 1wev_A Riken cDNA 1110020M19; 30.1 34 0.0012 21.4 2.4 23 140-162 18-41 (88)
94 3kgz_A Cupin 2 conserved barre 29.8 36 0.0012 23.4 2.7 22 14-35 77-98 (156)
95 2equ_A PHD finger protein 20-l 29.8 59 0.002 19.7 3.4 28 21-50 8-35 (74)
96 1yhf_A Hypothetical protein SP 29.3 40 0.0014 21.1 2.7 22 14-35 73-94 (115)
97 3u5e_Y L33, YL33, 60S ribosoma 28.7 58 0.002 22.0 3.5 30 21-52 48-77 (127)
98 1y9q_A Transcriptional regulat 28.6 42 0.0014 23.4 3.0 48 14-74 139-186 (192)
99 2gu9_A Tetracenomycin polyketi 28.4 35 0.0012 21.0 2.3 21 15-35 58-78 (113)
100 1loi_A Cyclic 3',5'-AMP specif 28.3 8.1 0.00028 18.2 -0.6 8 155-162 6-13 (26)
101 2qqr_A JMJC domain-containing 28.2 68 0.0023 21.4 3.7 27 22-50 5-31 (118)
102 2lcc_A AT-rich interactive dom 28.1 31 0.0011 21.1 1.9 31 22-52 5-36 (76)
103 2yt5_A Metal-response element- 27.9 50 0.0017 19.0 2.7 23 140-162 8-31 (66)
104 3l2h_A Putative sugar phosphat 27.8 43 0.0015 22.6 2.8 21 14-34 81-101 (162)
105 2e61_A Zinc finger CW-type PWW 27.3 44 0.0015 20.1 2.4 15 148-162 12-28 (69)
106 3ibm_A Cupin 2, conserved barr 27.2 45 0.0015 23.1 2.8 22 14-35 89-110 (167)
107 3h8u_A Uncharacterized conserv 26.9 32 0.0011 22.0 1.9 21 15-35 74-95 (125)
108 3cew_A Uncharacterized cupin p 26.6 39 0.0013 21.6 2.3 22 14-35 61-82 (125)
109 3iz5_Y 60S ribosomal protein L 26.3 64 0.0022 22.5 3.4 30 21-52 47-76 (150)
110 3jzv_A Uncharacterized protein 25.8 49 0.0017 23.0 2.8 22 14-35 86-107 (166)
111 3rns_A Cupin 2 conserved barre 25.5 46 0.0016 24.2 2.8 23 14-36 70-92 (227)
112 4e2g_A Cupin 2 conserved barre 25.5 42 0.0014 21.4 2.3 22 14-35 74-95 (126)
113 3d82_A Cupin 2, conserved barr 25.4 36 0.0012 20.6 1.9 23 14-36 63-85 (102)
114 1o4t_A Putative oxalate decarb 24.9 41 0.0014 22.1 2.2 21 15-35 92-112 (133)
115 4a17_S RPL26, 60S ribosomal pr 24.6 76 0.0026 21.7 3.5 30 21-52 47-76 (135)
116 3s6w_A Tudor domain-containing 24.2 97 0.0033 17.0 3.8 28 23-51 2-29 (54)
117 2dgy_A MGC11102 protein; EIF-1 23.7 58 0.002 21.4 2.7 15 21-35 52-66 (111)
118 2bnm_A Epoxidase; oxidoreducta 23.4 65 0.0022 22.4 3.2 22 14-35 153-178 (198)
119 1mhn_A SurviVal motor neuron p 23.3 1E+02 0.0035 17.3 3.5 28 22-50 3-30 (59)
120 2fqp_A Hypothetical protein BP 23.3 53 0.0018 20.0 2.4 22 14-35 52-75 (97)
121 2arc_A ARAC, arabinose operon 23.0 65 0.0022 21.2 3.0 22 14-35 51-72 (164)
122 1rc6_A Hypothetical protein YL 22.9 49 0.0017 24.5 2.5 23 14-36 94-116 (261)
123 3i4o_A Translation initiation 22.8 49 0.0017 20.4 2.1 23 22-46 53-75 (79)
124 1jt8_A EIF-1A, probable transl 22.5 69 0.0023 20.7 2.8 28 22-50 58-85 (102)
125 3vhs_A ATPase wrnip1; zinc fin 22.4 34 0.0012 16.4 1.0 10 153-162 5-14 (29)
126 2qf4_A Cell shape determining 21.9 1.6E+02 0.0053 20.6 4.9 46 21-66 107-154 (172)
127 2jvv_A Transcription antitermi 21.7 1.1E+02 0.0039 21.3 4.2 43 22-68 127-169 (181)
128 2e2z_A TIM15; protein import, 21.6 32 0.0011 22.3 1.1 12 150-161 34-45 (100)
129 3i7d_A Sugar phosphate isomera 21.1 69 0.0024 21.9 2.8 21 14-34 78-98 (163)
130 2q30_A Uncharacterized protein 20.8 49 0.0017 20.3 1.8 18 18-35 73-90 (110)
131 1sfn_A Conserved hypothetical 20.4 59 0.002 24.0 2.5 23 14-36 81-103 (246)
132 4he6_A Peptidase family U32; u 20.3 1.6E+02 0.0054 17.9 7.3 27 22-50 29-55 (89)
133 1at0_A 17-hedgehog; developmen 20.2 1.2E+02 0.0041 20.5 3.9 28 22-50 91-118 (145)
134 2z1c_A Hydrogenase expression/ 20.1 52 0.0018 20.1 1.7 12 23-34 36-47 (75)
No 1
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=100.00 E-value=1.4e-37 Score=230.86 Aligned_cols=137 Identities=26% Similarity=0.379 Sum_probs=106.5
Q ss_pred CCCCCCceeeeEEEEcCCCcEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeecccccCCcccccCCCC
Q 031269 2 AKPKAPRRTLESYTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSK 81 (162)
Q Consensus 2 ~~~~~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~~~~~~~~~~ 81 (162)
++.++++.+|+++.++|. +|++||+|||.+++.+.+++||+|++||++.+|+ ++++|+|||||+||.++....+.+|
T Consensus 8 ~~~~~~r~~y~~~~~~g~--~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~-~~v~v~WfyRPeet~~~~~~~~~~~ 84 (174)
T 1w4s_A 8 GLSSLHRTYSQDCSFKNS--MYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGE-KWLYGCWFYRPNETFHLATRKFLEK 84 (174)
T ss_dssp --------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCC-EEEEEEEEECGGGSCCCTTCEEETT
T ss_pred cccCCCcEEeEEEEECCE--EEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCC-EEEEEEEecCHHHcccccCCcCCCC
Confidence 567888999999999997 9999999999998866789999999999998888 9999999999999997764445699
Q ss_pred eeEEecceecCccCcEEeeeEEEecccccccCC---CCCCeEEEeeeeccCcceeccCCCcee
Q 031269 82 EVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDA---VGNDDFFCRFEYNSSSGAFNPDRVAVY 141 (162)
Q Consensus 82 Elf~s~~~d~~~~~~I~gkc~V~~~~~~~~~~~---~~~~~f~cr~~yd~~~~~f~p~~~~~~ 141 (162)
|||+|++.+++|+++|.|||.|+..++|.++.+ .+.++|||++.||..+++|.+..-+++
T Consensus 85 EvF~S~~~d~~~~~~I~gkC~V~~~~~~~~~~p~~~~~~dvF~c~~~Yd~~~~~f~~i~~w~~ 147 (174)
T 1w4s_A 85 EVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKIKLWTM 147 (174)
T ss_dssp EEEEEEEEEEEEGGGEEEEEEEEEHHHHTTEEETTCCGGGEEEEEEEEETTTTEEEECSSCCC
T ss_pred eeEEeCCcceecHHHeeeeEEEEECchhhhcCcCCCCCCCEEEEeEEEccccCeEccCccCCC
Confidence 999999999999999999999999999988765 246999999999999999997555544
No 2
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.96 E-value=1.3e-28 Score=221.01 Aligned_cols=128 Identities=21% Similarity=0.403 Sum_probs=113.3
Q ss_pred CCCCCceeeeEEEEcCCCcEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeecccccCCcccccCCCCe
Q 031269 3 KPKAPRRTLESYTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKE 82 (162)
Q Consensus 3 ~~~~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~~~~~~~~~~E 82 (162)
|+..++.+|+++.++|. +|++||+|||.++++..++|||+|++||++.+|+ +||+|+|||||+||.++++ ++++|
T Consensus 141 k~~~~~~~Y~s~~v~g~--~i~VGD~V~v~~~d~~~ppyIarIe~m~ed~~g~-k~~~v~Wf~rp~ET~lg~~--~~~~E 215 (1002)
T 3swr_A 141 KTDGKKSYYKKVCIDAE--TLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNG-QMFHAHWFCAGTDTVLGAT--SDPLE 215 (1002)
T ss_dssp CCBTTEEECSEEEETTE--EEETTCEEEECBSSTTSCCEEEEEEEEEEETTTE-EEEEEEEEEEGGGSTTGGG--SCTTE
T ss_pred ccccCceeeeEEEECCE--EEecCCEEEEecCCCCCCceEEEEEEEeecCCCC-eEEEEEEEecchhcccccC--CCCCc
Confidence 55678999999999997 9999999999998876778999999999998888 9999999999999999988 67999
Q ss_pred eEEecceecCccCcEEeeeEEEeccc---cccc---C---C---CCCCeEEEeeeeccCcceecc
Q 031269 83 VFLSDHHDIQSADTIEGKCTVHSFKS---YTKL---D---A---VGNDDFFCRFEYNSSSGAFNP 135 (162)
Q Consensus 83 lf~s~~~d~~~~~~I~gkc~V~~~~~---~~~~---~---~---~~~~~f~cr~~yd~~~~~f~p 135 (162)
||+|++++++++++|.|||.|+..+. |... . + .++++|||+..||+++++|.+
T Consensus 216 lFlsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~ 280 (1002)
T 3swr_A 216 LFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFES 280 (1002)
T ss_dssp EEEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCCCCCSCCCCCCTSEEEEEEEETTTTEEEC
T ss_pred eEeeccccCCcHHHhceeeEEEEccCCcchhhhcccccccccccCCCCeEEEEEEECCCCCcccC
Confidence 99999999999999999999998644 2211 1 1 236899999999999999995
No 3
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.94 E-value=6e-27 Score=214.43 Aligned_cols=128 Identities=21% Similarity=0.405 Sum_probs=109.8
Q ss_pred CCCCCceeeeEEEEcCCCcEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeecccccCCcccccCCCCe
Q 031269 3 KPKAPRRTLESYTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKE 82 (162)
Q Consensus 3 ~~~~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~~~~~~~~~~E 82 (162)
|+..++.+|+++.++|. +|++||+|||.++++..++|||+|++||++.+|+ ++|+|+|||||+||.+++. ++++|
T Consensus 452 k~~~~~~~Y~~~~v~g~--~~~vGD~V~v~~~d~~~p~yiarIe~iwe~~dg~-~~~~~~WfyRp~ETvlg~~--~~~rE 526 (1330)
T 3av4_A 452 KIEENRTYYQKVSIDEE--MLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQ-MMFHAHWFCAGTDTVLGAT--SDPLE 526 (1330)
T ss_dssp CCC--CEEECSEEEESS--EEETTCEEEECBCCSSCCCEEEEEEEEEEETTCC-EEEEEEEEEEGGGSTTGGG--SCTTE
T ss_pred eccCCceeeeEEEECCE--EEecCCEEEEeCCCCCCCCEEEEEeeeeecCCCC-EEEEEEEEEchHHcccccc--cCCCe
Confidence 56778999999999997 9999999999988755678999999999999888 9999999999999998886 77999
Q ss_pred eEEecceecCccCcEEeeeEEEeccc---ccccC--------C--CCCCeEEEeeeeccCcceecc
Q 031269 83 VFLSDHHDIQSADTIEGKCTVHSFKS---YTKLD--------A--VGNDDFFCRFEYNSSSGAFNP 135 (162)
Q Consensus 83 lf~s~~~d~~~~~~I~gkc~V~~~~~---~~~~~--------~--~~~~~f~cr~~yd~~~~~f~p 135 (162)
||+|++++++|+++|.|||.|++.++ |.+.. . ...++|||++.||+..++|..
T Consensus 527 lFlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~C~~~Yd~~~~~F~~ 592 (1330)
T 3av4_A 527 LFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFES 592 (1330)
T ss_dssp EEEEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC-------------CCEEEEEEEETTTTEEEC
T ss_pred EEEecccccCcHHHhcceeEEEEeccchhhhhhcccCccccccccccCCceEEEeEECCccCccCC
Confidence 99999999999999999999999655 53221 1 245789999999999999994
No 4
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=99.93 E-value=5.3e-25 Score=158.86 Aligned_cols=125 Identities=22% Similarity=0.367 Sum_probs=103.9
Q ss_pred ceeeeEEEEcCC---CcEEccCCEEEEecCCCCCCCeEEEEeEEEecC--CCCeEEEEEEEeecccccCCccccc----C
Q 031269 8 RRTLESYTVKSI---SKTIKPGDCVLMRPSEPSKPSYVAKIERIESDA--RGANVKVHVRWYYRPEESIGGRRQF----H 78 (162)
Q Consensus 8 ~~~y~~~~~~g~---~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~--~g~~~~v~v~Wfyrp~e~~~~~~~~----~ 78 (162)
-.+|+++.++-. ..++++||+|+|.+++. +.||||+|++|+++. ....+.++|+||+||+|+|.++... +
T Consensus 21 ~~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D~-~~PyVAki~~lye~~~e~~~~k~A~VQWy~R~~EiP~~k~~l~g~~~ 99 (163)
T 4dov_A 21 QQMYREICMKINDGSEIHIKVGQFVLIQGEDN-KKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSP 99 (163)
T ss_dssp EEEESEEEEECTTSCEEEEETTCEEEECCSSS-SCCEEEEEEEEEEETTSSSCEEEEEEEEEEEGGGSCTTTGGGGCSCC
T ss_pred ceeeeEEEEecCCCCCeEEeeCCEEEEeCCcc-cCChhHHHHHHHhccccCCCceEEEEEeeechhhccccchhhccCCC
Confidence 357999988432 36999999999999885 788999999999862 2334889999999999999876432 4
Q ss_pred CCCeeEEeccee---cCccCcEEeeeEEEecccccccCC--CCCCeEEEeeeeccCcceecc
Q 031269 79 GSKEVFLSDHHD---IQSADTIEGKCTVHSFKSYTKLDA--VGNDDFFCRFEYNSSSGAFNP 135 (162)
Q Consensus 79 ~~~Elf~s~~~d---~~~~~~I~gkc~V~~~~~~~~~~~--~~~~~f~cr~~yd~~~~~f~p 135 (162)
+++|||++++.+ .+++++|+|+|.|+..+.+..++. .++++||.|..||.+. |.|
T Consensus 100 ~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~p~~~~~e~t~FvklsWd~k~--f~p 159 (163)
T 4dov_A 100 PAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWNKKD--FAP 159 (163)
T ss_dssp CTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCCCSSCCCCSEEEEEEEECSSC--EEE
T ss_pred CCCeEEEecCCCCcccccHHHeeeceEEEEcCCccccCCCcccceEEEEEEEecCCc--cee
Confidence 689999999874 899999999999999988877642 4689999999999887 876
No 5
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.87 E-value=5.6e-22 Score=178.15 Aligned_cols=128 Identities=23% Similarity=0.388 Sum_probs=106.9
Q ss_pred CCCceeeeEEEEcCCCcEEccCCEEEEecCC-----------------------------------------CCCCCeEE
Q 031269 5 KAPRRTLESYTVKSISKTIKPGDCVLMRPSE-----------------------------------------PSKPSYVA 43 (162)
Q Consensus 5 ~~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~-----------------------------------------~~~~~~Ig 43 (162)
-+++.+|.++.++|. +|++||+|||.++. .+.+++||
T Consensus 319 ~~~~~~~~~~~~~g~--~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~Ig 396 (1002)
T 3swr_A 319 LDSRVLYYSATKNGI--LYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIG 396 (1002)
T ss_dssp CSSCEEESEEEETTE--EEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEE
T ss_pred cCCcEEEEEEEECCE--EEecCCEEEECCcccccccccccccccccccccccccchhhhhccchhccccccCCCCCceee
Confidence 357899999999997 99999999999932 12367899
Q ss_pred EEeEEEecCCCC------eEEEEEEEeecccccCCcccc--cCCCCeeEEecceecCccCcEEeeeEEEecccccccCC-
Q 031269 44 KIERIESDARGA------NVKVHVRWYYRPEESIGGRRQ--FHGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDA- 114 (162)
Q Consensus 44 ~I~~i~~~~~g~------~~~v~v~Wfyrp~e~~~~~~~--~~~~~Elf~s~~~d~~~~~~I~gkc~V~~~~~~~~~~~- 114 (162)
+|++|+.+.++. ..+|+|+|||||+||..+... ..+.||||+|++.+++|+++|.|||.|+..+++....+
T Consensus 397 rI~~i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~ 476 (1002)
T 3swr_A 397 RIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQV 476 (1002)
T ss_dssp EEEEEEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHH
T ss_pred EEeEEEecCCccccCCCccEEEEEEEEECcccccccccccccCCcceEEEecceeccCHHHcceEEEEEEeccccccchh
Confidence 999999865432 389999999999999865432 34679999999999999999999999999999876543
Q ss_pred ---CCCCeEEEeeeeccCcceec
Q 031269 115 ---VGNDDFFCRFEYNSSSGAFN 134 (162)
Q Consensus 115 ---~~~~~f~cr~~yd~~~~~f~ 134 (162)
.+++.||++..||+.++.|.
T Consensus 477 ~~~~~p~~fyf~~~Yd~~~~~f~ 499 (1002)
T 3swr_A 477 YSMGGPNRFYFLEAYNAKSKSFE 499 (1002)
T ss_dssp HHHTSSSEEEEEEEEETTTTEEE
T ss_pred hccCCCCeEEEEEEEeCCCCeee
Confidence 34578888899999999998
No 6
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.87 E-value=4.6e-22 Score=175.85 Aligned_cols=126 Identities=20% Similarity=0.372 Sum_probs=106.7
Q ss_pred CCceeeeEEEEcCCCcEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeecccccCCcc-------cccC
Q 031269 6 APRRTLESYTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGR-------RQFH 78 (162)
Q Consensus 6 ~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~~~-------~~~~ 78 (162)
++|+||.++.++|. .|++||+|||.+++ ..+.+||+|.+|+++.+|. .+++|+|||||+||..+. ....
T Consensus 43 ~~~~~~~~~~~~~~--~~~~~d~~~v~~~~-~~~~~i~~i~~~~~~~~~~-~~~~~~~~~r~~d~~~~~~~~~~~~~~~~ 118 (784)
T 4ft4_B 43 KARCHYRSAKVDNV--VYCLGDDVYVKAGE-NEADYIGRITEFFEGTDQC-HYFTCRWFFRAEDTVINSLVSISVDGHKH 118 (784)
T ss_dssp CEEEECSEEEETTE--EEETTCEEEECCST-TSCCEEEEEEEEEEETTSC-EEEEEEEEEEGGGSTTGGGGGCCBTTBCC
T ss_pred ccceeeeeeeECCE--EEeCCCeEEEeCCC-CCCCEEEEEEEEEEcCCCC-EEEEEEEeeChhhhccccccccccccccc
Confidence 57899999999997 99999999999866 3788999999999999998 999999999999998653 1235
Q ss_pred CCCeeEEecceecCccCcEEeeeEEEecccccccCC----CCCCeEEEeeeeccCcceecc
Q 031269 79 GSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDA----VGNDDFFCRFEYNSSSGAFNP 135 (162)
Q Consensus 79 ~~~Elf~s~~~d~~~~~~I~gkc~V~~~~~~~~~~~----~~~~~f~cr~~yd~~~~~f~p 135 (162)
+.+|||+|++++++|+++|.|||+|++......... .....|||+..|.....+|..
T Consensus 119 d~~~~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 179 (784)
T 4ft4_B 119 DPRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCDLYYDMSYSVAYSTFAN 179 (784)
T ss_dssp CTTBEEEEEEEEEEEGGGEEEECCEEECCTTSCHHHHHHHHHHCSEEESEEEETGGGEEEE
T ss_pred ccceEEEeCcEEEechHHeeeeEEEEeeCccccchhhhhccCCcceEeccccCccccCccC
Confidence 689999999999999999999999998765433221 124569999999999888874
No 7
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.84 E-value=7.9e-21 Score=174.25 Aligned_cols=127 Identities=23% Similarity=0.400 Sum_probs=106.8
Q ss_pred CCceeeeEEEEcCCCcEEccCCEEEEecCC-----------------------------------------CCCCCeEEE
Q 031269 6 APRRTLESYTVKSISKTIKPGDCVLMRPSE-----------------------------------------PSKPSYVAK 44 (162)
Q Consensus 6 ~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~-----------------------------------------~~~~~~Ig~ 44 (162)
+|+.+|.+|+++|. +|++||+|||.++. .+.+++||+
T Consensus 632 ~~~~~Y~~~~~~g~--~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~Igq 709 (1330)
T 3av4_A 632 DGRVYCSSITKNGV--VYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGR 709 (1330)
T ss_dssp SSSEEEEEEEETTE--EEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEEE
T ss_pred cCceeeeEEEECCE--EEecCCEEEECcccccccccccccccccccccccccccchhhhcccccccccccCCCCCceEEE
Confidence 57899999999997 99999999998761 024568999
Q ss_pred EeEEEecCCC-----CeEEEEEEEeecccccCCccc--ccCCCCeeEEecceecCccCcEEeeeEEEecccccccC-C--
Q 031269 45 IERIESDARG-----ANVKVHVRWYYRPEESIGGRR--QFHGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLD-A-- 114 (162)
Q Consensus 45 I~~i~~~~~g-----~~~~v~v~Wfyrp~e~~~~~~--~~~~~~Elf~s~~~d~~~~~~I~gkc~V~~~~~~~~~~-~-- 114 (162)
|.+||.+.++ ...+|+|+|||||+||..+.. .....||||+|++.+++|+++|.|||.|+...++.... +
T Consensus 710 I~eI~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~~y~ 789 (1330)
T 3av4_A 710 IKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYS 789 (1330)
T ss_dssp EEECCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHHHHH
T ss_pred EEEEEecCCccccCCCceEEEEEEeeChhhcccccccccccCcceEEeeccceecCHHHcCceEEEEecccccccccccc
Confidence 9999987542 238999999999999987632 23578999999999999999999999999998877642 1
Q ss_pred -CCCCeEEEeeeeccCcceec
Q 031269 115 -VGNDDFFCRFEYNSSSGAFN 134 (162)
Q Consensus 115 -~~~~~f~cr~~yd~~~~~f~ 134 (162)
.+.+.|||+..||..++.|.
T Consensus 790 ~~g~d~Fy~~~~Yd~~~k~~~ 810 (1330)
T 3av4_A 790 QGGPDRFYFLEAYNSKTKNFE 810 (1330)
T ss_dssp HTSTTEEEESCEEETTTTEEE
T ss_pred cCCCCeEEEEEEecccCCeec
Confidence 34799999999999999997
No 8
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=99.72 E-value=2.4e-17 Score=125.42 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=99.6
Q ss_pred EEEcCCCcEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeecccccCC-------ccc--------cc-
Q 031269 14 YTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIG-------GRR--------QF- 77 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~-------~~~--------~~- 77 (162)
+....+|..+++||+|.|..++ .+.+.++.|.+|.-....+...+.|.||+|..|+.. .+. .+
T Consensus 44 L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~ 122 (232)
T 2fl7_A 44 LKRISDGLSFGKGESVIFNDNV-TETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFY 122 (232)
T ss_dssp EEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHH
T ss_pred EEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhh
Confidence 4555567799999999998875 367788899999887634458899999999999965 221 23
Q ss_pred -------CCCCeeEEecceecCccCcEEeeeEEEeccccccc--CCCCCCeEEEeeeeccCcceeccCCCceee
Q 031269 78 -------HGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKL--DAVGNDDFFCRFEYNSSSGAFNPDRVAVYC 142 (162)
Q Consensus 78 -------~~~~Elf~s~~~d~~~~~~I~gkc~V~~~~~~~~~--~~~~~~~f~cr~~yd~~~~~f~p~~~~~~C 142 (162)
...||||+|.+.+.+-+.+|+++|+|++.++|..+ +.....+||||+++|+....|++..|...+
T Consensus 123 ~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~d~~~~~tFf~R~~cd~~~~~f~~iD~~~~~ 196 (232)
T 2fl7_A 123 KDKFFNEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSIDKIEDRDFLVRYACEPTAEKFVPIDIFQII 196 (232)
T ss_dssp HHHHHHHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC-------CTTTEEEEEEECCTTSCSCEECCHHHHH
T ss_pred hhhhhcccccceEEEeccHHHHHHHhhhhheEeccHHHHHHhcccccCCceEEEEEEEcCCcCccccccHHHHH
Confidence 68999999999999999999999999999999977 334579999999999988889987775443
No 9
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=99.72 E-value=3e-17 Score=125.32 Aligned_cols=128 Identities=15% Similarity=0.117 Sum_probs=106.7
Q ss_pred EEEcCCCcEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeecccccCC-------ccc--------cc-
Q 031269 14 YTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIG-------GRR--------QF- 77 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~-------~~~--------~~- 77 (162)
+....+|..+++||+|.|..++ .+.+.++.|.+|.-....+...+.|.||+|..|+.. .+. .+
T Consensus 44 L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~ 122 (238)
T 1m4z_A 44 LKRSSDGIKLGRGDSVVMHNEA-AGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYY 122 (238)
T ss_dssp EEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHH
T ss_pred EEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhh
Confidence 5555567799999999998875 367789999999887745568899999999999965 221 23
Q ss_pred -------CCCCeeEEecceecCccCcEEeeeEEEeccccccc--CCCCCCeEEEeeeeccCcceeccCCCceee
Q 031269 78 -------HGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKL--DAVGNDDFFCRFEYNSSSGAFNPDRVAVYC 142 (162)
Q Consensus 78 -------~~~~Elf~s~~~d~~~~~~I~gkc~V~~~~~~~~~--~~~~~~~f~cr~~yd~~~~~f~p~~~~~~C 142 (162)
...||||+|.+.+.+-+.+|+++|+|++.++|..+ +.....+||||+++|+....|++..|...|
T Consensus 123 ~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~d~~~~~tFf~R~~cd~~~~~f~~iD~~~~~ 196 (238)
T 1m4z_A 123 NKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPTGEKFVDINIEDVK 196 (238)
T ss_dssp HHHHHHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGGGCCTTTEEEEEEECCTTSCCCEECCHHHHH
T ss_pred hhhhhcccccceEEEeccHHHHhHHhhhhheEeccHHHHhhhccccccCceEEEEEEEcCCcCccccccHHHHH
Confidence 68999999999999999999999999999999977 345689999999999988889987776544
No 10
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.73 E-value=1.7e-05 Score=50.63 Aligned_cols=33 Identities=42% Similarity=0.925 Sum_probs=29.8
Q ss_pred cceeccCCCceeeecCCCCCCCcceeecCCCCC
Q 031269 130 SGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSD 162 (162)
Q Consensus 130 ~~~f~p~~~~~~C~c~~~~npd~~~~~C~~c~~ 162 (162)
.+.|.++.+...|+|.+|++++..||||++|++
T Consensus 3 ~~~~~~~~~~~~C~C~~~~d~~~~MIqCd~C~~ 35 (79)
T 1wep_A 3 SGSSGMALVPVYCLCRQPYNVNHFMIECGLCQD 35 (79)
T ss_dssp SCCCCCCCCCCCSTTSCSCCSSSCEEEBTTTCC
T ss_pred CCccCccCCccEEEcCCccCCCCceEEcCCCCC
Confidence 466888899999999999999999999999974
No 11
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.20 E-value=0.00013 Score=46.03 Aligned_cols=27 Identities=41% Similarity=1.190 Sum_probs=24.1
Q ss_pred CCCceeeecCCCCCCCcceeecCCCCC
Q 031269 136 DRVAVYCKCEMPYNPDDLMVQCEGCSD 162 (162)
Q Consensus 136 ~~~~~~C~c~~~~npd~~~~~C~~c~~ 162 (162)
..+...|+|.+|++++..||||++|++
T Consensus 7 ~~~~~yCiC~~~~~~~~~MI~Cd~C~~ 33 (75)
T 3kqi_A 7 ATVPVYCVCRLPYDVTRFMIECDACKD 33 (75)
T ss_dssp CCCCEETTTTEECCTTSCEEECTTTCC
T ss_pred CCCeeEEECCCcCCCCCCEEEcCCCCC
Confidence 356789999999999999999999974
No 12
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.81 E-value=0.00069 Score=41.15 Aligned_cols=25 Identities=24% Similarity=0.676 Sum_probs=22.0
Q ss_pred Cceee-ecCCCCCCCcceeecCCCCC
Q 031269 138 VAVYC-KCEMPYNPDDLMVQCEGCSD 162 (162)
Q Consensus 138 ~~~~C-~c~~~~npd~~~~~C~~c~~ 162 (162)
....| +|.+|++++..||||+.|++
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~ 30 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEM 30 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCC
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCC
Confidence 34679 99999999999999999974
No 13
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.54 E-value=0.0011 Score=38.63 Aligned_cols=22 Identities=32% Similarity=0.744 Sum_probs=19.8
Q ss_pred eeecCCCCCCCcceeecC-CCCC
Q 031269 141 YCKCEMPYNPDDLMVQCE-GCSD 162 (162)
Q Consensus 141 ~C~c~~~~npd~~~~~C~-~c~~ 162 (162)
.|+|.+|++++..||||+ .|++
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~ 27 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDE 27 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCC
T ss_pred CCCCcCccCCCCcEEEeCCCCCc
Confidence 588999999999999999 7974
No 14
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.51 E-value=0.0011 Score=41.19 Aligned_cols=26 Identities=35% Similarity=0.829 Sum_probs=23.1
Q ss_pred CCCceeeecCCCCCCCcceeecCCCC
Q 031269 136 DRVAVYCKCEMPYNPDDLMVQCEGCS 161 (162)
Q Consensus 136 ~~~~~~C~c~~~~npd~~~~~C~~c~ 161 (162)
+.+...|+|.++.+....||||+.|+
T Consensus 13 ~~~~~~C~C~~~~~~g~~mI~Cd~C~ 38 (72)
T 1wee_A 13 DNWKVDCKCGTKDDDGERMLACDGCG 38 (72)
T ss_dssp CSSEECCTTCCCSCCSSCEEECSSSC
T ss_pred CCcceEeeCCCccCCCCcEEECCCCC
Confidence 57789999999987777899999996
No 15
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=96.47 E-value=0.0011 Score=40.59 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.3
Q ss_pred ceeeecCCCCCCCcceeecC-CCCC
Q 031269 139 AVYCKCEMPYNPDDLMVQCE-GCSD 162 (162)
Q Consensus 139 ~~~C~c~~~~npd~~~~~C~-~c~~ 162 (162)
...++|.+|+|++..||+|+ .|++
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~ 33 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQK 33 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCC
T ss_pred CcCccCCCccCCCCCeEecccCccc
Confidence 35678999999999999999 9974
No 16
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=96.40 E-value=0.0014 Score=38.22 Aligned_cols=23 Identities=30% Similarity=0.847 Sum_probs=19.9
Q ss_pred ceeeecCCCCCCCcceeecCCCCC
Q 031269 139 AVYCKCEMPYNPDDLMVQCEGCSD 162 (162)
Q Consensus 139 ~~~C~c~~~~npd~~~~~C~~c~~ 162 (162)
...|+|.+|.+ +..||||++|++
T Consensus 4 ~~~C~C~~~~~-~~~MI~Cd~C~~ 26 (52)
T 3o7a_A 4 LVTCFCMKPFA-GRPMIECNECHT 26 (52)
T ss_dssp CBCSTTCCBCT-TCCEEECTTTCC
T ss_pred CeEEEeCCcCC-CCCEEEcCCCCc
Confidence 36799999977 889999999974
No 17
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.19 E-value=0.0024 Score=40.07 Aligned_cols=26 Identities=38% Similarity=1.019 Sum_probs=21.7
Q ss_pred CCCceeeecCCCCCCCcceeecCCCCC
Q 031269 136 DRVAVYCKCEMPYNPDDLMVQCEGCSD 162 (162)
Q Consensus 136 ~~~~~~C~c~~~~npd~~~~~C~~c~~ 162 (162)
+.+...|+|.+|.+ +..||||++|++
T Consensus 13 d~~~~~C~C~~~~~-~~~MI~Cd~C~~ 38 (76)
T 1wem_A 13 DPNALYCICRQPHN-NRFMICCDRCEE 38 (76)
T ss_dssp CTTCCCSTTCCCCC-SSCEEECSSSCC
T ss_pred CCCCCEEECCCccC-CCCEEEeCCCCC
Confidence 45568999999976 678999999974
No 18
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=95.96 E-value=0.0038 Score=38.47 Aligned_cols=25 Identities=28% Similarity=0.756 Sum_probs=21.1
Q ss_pred CCceeeecCCCCCCCcceeecCCCCC
Q 031269 137 RVAVYCKCEMPYNPDDLMVQCEGCSD 162 (162)
Q Consensus 137 ~~~~~C~c~~~~npd~~~~~C~~c~~ 162 (162)
.....|+|.++.+ +..||||++|++
T Consensus 17 ~~~~~CiC~~~~~-~~~MIqCd~C~~ 41 (68)
T 3o70_A 17 QGLVTCFCMKPFA-GRPMIECNECHT 41 (68)
T ss_dssp TTCCCSTTCCCCT-TCCEEECTTTCC
T ss_pred CCceEeECCCcCC-CCCEEECCCCCc
Confidence 4468899999976 778999999974
No 19
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=95.46 E-value=0.0051 Score=51.74 Aligned_cols=28 Identities=39% Similarity=1.084 Sum_probs=24.6
Q ss_pred cCCCceeeecCCCCCCCcceeecCCCCC
Q 031269 135 PDRVAVYCKCEMPYNPDDLMVQCEGCSD 162 (162)
Q Consensus 135 p~~~~~~C~c~~~~npd~~~~~C~~c~~ 162 (162)
+......|+|.+|.+++..||||++|++
T Consensus 33 ~~~~~~yC~C~~~~d~~~~MIqCd~C~~ 60 (488)
T 3kv5_D 33 PPPPPVYCVCRQPYDVNRFMIECDICKD 60 (488)
T ss_dssp CCCCCEETTTTEECCTTSCEEEBTTTCC
T ss_pred CCCCCeEEeCCCcCCCCCCeEEccCCCC
Confidence 4456799999999999999999999974
No 20
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.56 E-value=0.022 Score=35.84 Aligned_cols=25 Identities=36% Similarity=0.735 Sum_probs=21.5
Q ss_pred CCceeeecCCCCCCCcceeecC--CCCC
Q 031269 137 RVAVYCKCEMPYNPDDLMVQCE--GCSD 162 (162)
Q Consensus 137 ~~~~~C~c~~~~npd~~~~~C~--~c~~ 162 (162)
.+...|+|.++ +.+..||||+ .|..
T Consensus 14 ~~~~~CiC~~~-~~~g~MI~CD~~~C~~ 40 (78)
T 1wew_A 14 EIKVRCVCGNS-LETDSMIQCEDPRCHV 40 (78)
T ss_dssp CCCCCCSSCCC-CCCSCEEECSSTTTCC
T ss_pred CCCEEeECCCc-CCCCCEEEECCccCCc
Confidence 46789999999 6788999999 8963
No 21
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.83 E-value=0.08 Score=32.58 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=18.0
Q ss_pred CceeeecCCCCCCCcceeecCCCC
Q 031269 138 VAVYCKCEMPYNPDDLMVQCEGCS 161 (162)
Q Consensus 138 ~~~~C~c~~~~npd~~~~~C~~c~ 161 (162)
...+|+|.++. +..||+|++|+
T Consensus 5 ~~~yC~C~~~~--~g~MI~CD~cd 26 (70)
T 1x4i_A 5 SSGYCICNQVS--YGEMVGCDNQD 26 (70)
T ss_dssp CCCCSTTSCCC--CSSEECCSCTT
T ss_pred CCeEEEcCCCC--CCCEeEeCCCC
Confidence 45789999995 45899999984
No 22
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=89.40 E-value=0.17 Score=31.27 Aligned_cols=23 Identities=30% Similarity=0.869 Sum_probs=18.2
Q ss_pred ceee-ecCCCCCCCcceeecCCCCC
Q 031269 139 AVYC-KCEMPYNPDDLMVQCEGCSD 162 (162)
Q Consensus 139 ~~~C-~c~~~~npd~~~~~C~~c~~ 162 (162)
...| +|.++.+ +..||+|++|..
T Consensus 18 ~~~C~~C~~~~~-~~~mi~CD~C~~ 41 (75)
T 2k16_A 18 IWICPGCNKPDD-GSPMIGCDDCDD 41 (75)
T ss_dssp EECBTTTTBCCS-SCCEEECSSSSS
T ss_pred CcCCCCCCCCCC-CCCEEEcCCCCc
Confidence 4568 8999975 558999999973
No 23
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=88.86 E-value=0.18 Score=32.62 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=18.7
Q ss_pred CCceeeecCCCCCCCcceeecCCCC
Q 031269 137 RVAVYCKCEMPYNPDDLMVQCEGCS 161 (162)
Q Consensus 137 ~~~~~C~c~~~~npd~~~~~C~~c~ 161 (162)
....+|+|.++.+- .||+|++|+
T Consensus 24 ~~~~yCiC~~~~~g--~MI~CD~c~ 46 (90)
T 2jmi_A 24 QEEVYCFCRNVSYG--PMVACDNPA 46 (90)
T ss_dssp CCSCCSTTTCCCSS--SEECCCSSS
T ss_pred CCCcEEEeCCCCCC--CEEEecCCC
Confidence 45689999998763 699999975
No 24
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=88.71 E-value=0.27 Score=29.85 Aligned_cols=23 Identities=39% Similarity=0.876 Sum_probs=18.2
Q ss_pred CceeeecCCCCCCCcceeecCC--CC
Q 031269 138 VAVYCKCEMPYNPDDLMVQCEG--CS 161 (162)
Q Consensus 138 ~~~~C~c~~~~npd~~~~~C~~--c~ 161 (162)
....|+|.++.+ +..||+|++ |+
T Consensus 9 ~~v~C~C~~~~~-~g~mI~CD~~~C~ 33 (68)
T 2rsd_A 9 AKVRCICSSTMV-NDSMIQCEDQRCQ 33 (68)
T ss_dssp CEECCTTCCCSC-CSCEEECSCTTTC
T ss_pred CCEEeECCCCcC-CCCEEEECCCCCC
Confidence 357899998844 678999996 85
No 25
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=88.48 E-value=0.13 Score=30.81 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=17.8
Q ss_pred CceeeecCCCCCCCcceeecCCCC
Q 031269 138 VAVYCKCEMPYNPDDLMVQCEGCS 161 (162)
Q Consensus 138 ~~~~C~c~~~~npd~~~~~C~~c~ 161 (162)
....|+|+++.+ ..||+|++|+
T Consensus 10 e~~yC~C~~~~~--g~MI~CD~c~ 31 (62)
T 2g6q_A 10 EPTYCLCNQVSY--GEMIGCDNEQ 31 (62)
T ss_dssp CCEETTTTEECC--SEEEECSCTT
T ss_pred CCcEEECCCCCC--CCeeeeeCCC
Confidence 468999999976 4799999943
No 26
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=87.77 E-value=0.16 Score=30.10 Aligned_cols=21 Identities=24% Similarity=0.581 Sum_probs=17.5
Q ss_pred CceeeecCCCCCCCcceeecCCC
Q 031269 138 VAVYCKCEMPYNPDDLMVQCEGC 160 (162)
Q Consensus 138 ~~~~C~c~~~~npd~~~~~C~~c 160 (162)
....|+|.++.+ ..||+|++|
T Consensus 9 e~~~C~C~~~~~--g~mi~CD~c 29 (60)
T 2vnf_A 9 EPTYCLCHQVSY--GEMIGCDNP 29 (60)
T ss_dssp CCEETTTTEECC--SEEEECSCT
T ss_pred CCCEEECCCcCC--CCEEEeCCC
Confidence 468999999965 679999994
No 27
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=87.61 E-value=0.24 Score=32.33 Aligned_cols=23 Identities=30% Similarity=0.780 Sum_probs=18.5
Q ss_pred ceeeecCCCCCCCcceeecCCCCC
Q 031269 139 AVYCKCEMPYNPDDLMVQCEGCSD 162 (162)
Q Consensus 139 ~~~C~c~~~~npd~~~~~C~~c~~ 162 (162)
..-|+|.++.+ +..||+|+.|..
T Consensus 28 ~vrCiC~~~~~-~~~mi~Cd~C~~ 50 (98)
T 2lv9_A 28 VTRCICGFTHD-DGYMICCDKCSV 50 (98)
T ss_dssp BCCCTTSCCSC-SSCEEEBTTTCB
T ss_pred CEEeECCCccC-CCcEEEcCCCCC
Confidence 35699999965 568999999973
No 28
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=86.95 E-value=0.21 Score=29.54 Aligned_cols=23 Identities=26% Similarity=0.752 Sum_probs=18.2
Q ss_pred CCceeeecCCCCCCCcceeecCC--CC
Q 031269 137 RVAVYCKCEMPYNPDDLMVQCEG--CS 161 (162)
Q Consensus 137 ~~~~~C~c~~~~npd~~~~~C~~--c~ 161 (162)
.....|+|.++.+ ..||+|++ |.
T Consensus 7 ~e~~yC~C~~~~~--g~mi~CD~~~C~ 31 (59)
T 3c6w_A 7 NEPTYCLCHQVSY--GEMIGCDNPDCP 31 (59)
T ss_dssp -CCEETTTTEECC--SEEEECSCTTCS
T ss_pred CCCcEEECCCCCC--CCeeEeeCCCCC
Confidence 3468999999975 57999999 64
No 29
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=86.13 E-value=0.36 Score=29.63 Aligned_cols=23 Identities=30% Similarity=0.778 Sum_probs=18.6
Q ss_pred CCceeeecCCCCCCCcceeecCC--CC
Q 031269 137 RVAVYCKCEMPYNPDDLMVQCEG--CS 161 (162)
Q Consensus 137 ~~~~~C~c~~~~npd~~~~~C~~--c~ 161 (162)
.....|+|.++.+ ..||+|++ |.
T Consensus 14 ~~~~~C~C~~~~~--g~MI~CD~~~C~ 38 (71)
T 1wen_A 14 NEPTYCLCHQVSY--GEMIGCDNPDCS 38 (71)
T ss_dssp TSCCCSTTCCCSC--SSEECCSCSSCS
T ss_pred CCCCEEECCCCCC--CCEeEeeCCCCC
Confidence 3468899999975 57999999 64
No 30
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.22 E-value=0.37 Score=31.14 Aligned_cols=21 Identities=24% Similarity=0.635 Sum_probs=17.4
Q ss_pred CCceeeecCCCCCCCcceeecCC
Q 031269 137 RVAVYCKCEMPYNPDDLMVQCEG 159 (162)
Q Consensus 137 ~~~~~C~c~~~~npd~~~~~C~~ 159 (162)
.....|+|.++.+ ..||+|++
T Consensus 34 ~e~~yCiC~~~~~--g~MI~CD~ 54 (91)
T 1weu_A 34 NEPTYCLCHQVSY--GEMIGCDN 54 (91)
T ss_dssp CCCBCSTTCCBCC--SCCCCCSC
T ss_pred CCCcEEECCCCCC--CCEeEecC
Confidence 3468899999975 57999999
No 31
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=77.69 E-value=5.4 Score=23.33 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=25.4
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 52 (162)
.++.|+.|++.-.| ...|.|.|+++....
T Consensus 3 ~f~~GedVLarwsD--G~fYlGtI~~V~~~~ 31 (58)
T 4hcz_A 3 RLWEGQDVLARWTD--GLLYLGTIKKVDSAR 31 (58)
T ss_dssp SCCTTCEEEEECTT--SCEEEEEEEEEETTT
T ss_pred ccccCCEEEEEecC--CCEEeEEEEEEecCC
Confidence 46899999999888 799999999998763
No 32
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=73.07 E-value=1.7 Score=36.65 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=13.4
Q ss_pred CCCCcceeecCCCCC
Q 031269 148 YNPDDLMVQCEGCSD 162 (162)
Q Consensus 148 ~npd~~~~~C~~c~~ 162 (162)
.|||..||+|++|++
T Consensus 52 ~n~~~~mI~CD~C~~ 66 (528)
T 3pur_A 52 KKNDFQWIGCDSCQT 66 (528)
T ss_dssp TTSTTSEEECTTTCC
T ss_pred CCcCCCEEECCCCCc
Confidence 479999999999985
No 33
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=72.84 E-value=3.3 Score=25.66 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=26.0
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 52 (162)
.|..|+.|++.-.| ..+|.|.|.++....
T Consensus 26 ~f~eGeDVLarwsD--GlfYLGTI~kV~~~~ 54 (79)
T 2m0o_A 26 RLWEGQDVLARWTD--GLLYLGTIKKVDSAR 54 (79)
T ss_dssp CCCTTCEEEBCCTT--SCCCEEEEEEEETTT
T ss_pred eeccCCEEEEEecC--CCEEeEEEEEeccCC
Confidence 78999999999888 799999999998763
No 34
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=72.73 E-value=2.2 Score=29.19 Aligned_cols=44 Identities=25% Similarity=0.455 Sum_probs=32.7
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecC-----CCCeEEEEEEEeec
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA-----RGANVKVHVRWYYR 66 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~-----~g~~~~v~v~Wfyr 66 (162)
..|.+||.|...-.. -+.|-|+|...-... .+....+.|+||-.
T Consensus 21 ~~~~~GdlVwaK~~g--~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~ 69 (134)
T 2gfu_A 21 SDFSPGDLVWAKMEG--YPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDD 69 (134)
T ss_dssp CCCCTTSEEEECCTT--SCCEEEECCCCSSTTCCEEESSSCEEEEEEECSS
T ss_pred CCCCCCCEEEEeecC--CCCCCeeecchhhhhhhhhccCCCceEEEEECCC
Confidence 389999999999887 689999998864331 12225788888843
No 35
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=72.34 E-value=8 Score=23.25 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=25.2
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 52 (162)
.+++||.|+..=.| ...|.|.|.+|....
T Consensus 13 ~f~vGddVLA~wtD--Gl~Y~gtI~~V~~~~ 41 (66)
T 2eqj_A 13 KFEEGQDVLARWSD--GLFYLGTIKKINILK 41 (66)
T ss_dssp CSCTTCEEEEECTT--SCEEEEEEEEEETTT
T ss_pred cccCCCEEEEEEcc--CcEEEeEEEEEccCC
Confidence 68999999998655 689999999999863
No 36
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=70.87 E-value=9.5 Score=24.43 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=24.5
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecCC
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDAR 53 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~ 53 (162)
.|.+|+.|++..+ ...+-|+|+++....+
T Consensus 23 ~~~vG~kv~v~~~---~~~y~AkIl~ir~~~~ 51 (92)
T 2ro0_A 23 DIIIKCQCWVQKN---DEERLAEILSINTRKA 51 (92)
T ss_dssp SCCTTCEEEEEET---TEEEEEEEEEEECSSS
T ss_pred cccCCCEEEEEEC---CEEEEEEEEEEEEcCC
Confidence 6899999999963 4789999999998643
No 37
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=69.81 E-value=5.9 Score=24.91 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=32.8
Q ss_pred ccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEe
Q 031269 24 KPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWY 64 (162)
Q Consensus 24 ~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~~v~v~Wf 64 (162)
++||.+.|...........|.|+++.-.. |. .-..|+|+
T Consensus 7 ~vGDrlvv~g~~vg~~~R~GeIvEV~g~d-G~-PPY~VRw~ 45 (83)
T 2a7y_A 7 KVGDYLVVKGTTTERHDQHAEIIEVRSAD-GS-PPYVVRWL 45 (83)
T ss_dssp CTTEEEEESCTTTSCCEEEEEEEECSCSS-SC-SCEEEEET
T ss_pred cCCCEEEEecCcCCCCCcEEEEEEEECCC-CC-CCEEEEec
Confidence 68999999998766788999999998765 66 66789995
No 38
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=67.65 E-value=4.7 Score=28.42 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=32.8
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecCC--CCeEEEEEEEeec
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDAR--GANVKVHVRWYYR 66 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~--g~~~~v~v~Wfyr 66 (162)
..+.+||.|..+-.. -+.|-|+|........ ...-.+.|+||=.
T Consensus 15 ~~f~~GDLVWaKvkG--~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~ 60 (154)
T 3llr_A 15 RGFGIGELVWGKLRG--FSWWPGRIVSWWMTGRSRAAEGTRWVMWFGD 60 (154)
T ss_dssp CCCCTTCEEEECCTT--SCCEEEEEECGGGTTSCCCCTTEEEEEETTT
T ss_pred CCCccCCEEEEecCC--CCCCCEEEecccccccccCCCCEEEEEEeCC
Confidence 388999999999977 7899999999764321 1114678888843
No 39
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=67.06 E-value=7.7 Score=23.49 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=22.3
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEE
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIE 49 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~ 49 (162)
.|.+||.|++.=.| ...|.|.|++..
T Consensus 15 ~~~~geDVL~rw~D--G~fYLGtIVd~~ 40 (69)
T 2xk0_A 15 TYALQEDVFIKCND--GRFYLGTIIDQT 40 (69)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEEC
T ss_pred ccccCCeEEEEecC--CCEEEEEEEecC
Confidence 78999999999777 799999996544
No 40
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=66.98 E-value=3.2 Score=27.18 Aligned_cols=18 Identities=28% Similarity=0.726 Sum_probs=15.1
Q ss_pred CCCCCCCcceeecCCCCC
Q 031269 145 EMPYNPDDLMVQCEGCSD 162 (162)
Q Consensus 145 ~~~~npd~~~~~C~~c~~ 162 (162)
..+..|+..-+||+.|.|
T Consensus 19 ~~~~~~~~~WVQCD~C~K 36 (100)
T 2l7p_A 19 EDSYSTESAWVRCDDCFK 36 (100)
T ss_dssp SSCCSSSSEEEECTTTCC
T ss_pred CCCCCCCCeEEeeCCCCc
Confidence 456678999999999986
No 41
>3zzs_A Transcription attenuation protein MTRB; transcription regulation, protein engineering; HET: TRP; 1.49A {Geobacillus stearothermophilus} SCOP: b.82.5.1 PDB: 3zzq_A* 3zzl_A*
Probab=66.44 E-value=8.2 Score=22.82 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=37.0
Q ss_pred EEEEEeecccccCCcccccCCCCeeEEecceecCccCcEEeeeEEEec
Q 031269 59 VHVRWYYRPEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKCTVHSF 106 (162)
Q Consensus 59 v~v~Wfyrp~e~~~~~~~~~~~~Elf~s~~~d~~~~~~I~gkc~V~~~ 106 (162)
|.|.=+-|..||...-..-.+..||.....++..++-.|+|++.|+..
T Consensus 13 V~VigltRg~dtkfhhtEkLdkGEVmiaQftehtsaiKiRGkA~i~t~ 60 (65)
T 3zzs_A 13 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTR 60 (65)
T ss_dssp EEEEC-CCSSSCCCCCEEEECTTCEEEEECCSSCSEEEEESSEEEEET
T ss_pred eEEEEeeccCCccchhhhccCCCcEEEEEeecceeEEEEeceEEEEee
Confidence 666677788887533222257899999999999999999999999864
No 42
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=61.48 E-value=4.2 Score=26.87 Aligned_cols=42 Identities=26% Similarity=0.430 Sum_probs=30.8
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecC-CCCeEEEEEEEe
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA-RGANVKVHVRWY 64 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~-~g~~~~v~v~Wf 64 (162)
..+++||.|...-.. -+.|-|+|.++-+.. ......+.|+||
T Consensus 18 ~~~~~GdlVwaK~kG--yP~WPa~V~~~p~~~~k~~~~~~~V~FF 60 (110)
T 1ri0_A 18 KEYKCGDLVFAKMKG--YPHWPARIDEMPEAAVKSTANKYQVFFF 60 (110)
T ss_dssp SSCCTTCEEEEEETT--EEEEEEEEECCCSSSSCCCSSCEEEEET
T ss_pred CCCCCCCEEEEEeCC--CCCCCEEEecccHhhcCCCCCEEEEEEe
Confidence 488999999999977 689999998754321 111256788888
No 43
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.10 E-value=24 Score=21.16 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=26.0
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 52 (162)
-.+.+||.|+..=.| ...|.|.|.++....
T Consensus 8 ~~f~eGqdVLarWsD--GlfYlGtV~kV~~~~ 37 (68)
T 2e5p_A 8 PRLWEGQDVLARWTD--GLLYLGTIKKVDSAR 37 (68)
T ss_dssp CCCCTTCEEEEECTT--SSEEEEEEEEEETTT
T ss_pred cccccCCEEEEEecC--CcEEEeEEEEEecCC
Confidence 378999999998887 689999999998753
No 44
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=58.70 E-value=7 Score=27.24 Aligned_cols=43 Identities=19% Similarity=0.441 Sum_probs=29.7
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecCCC-CeEEEEEEEee
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDARG-ANVKVHVRWYY 65 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g-~~~~v~v~Wfy 65 (162)
..|++||.|...-.. -+.|-|+|...-..... ....+.|.||-
T Consensus 21 ~~f~~GdlVwaK~~g--~p~WPa~V~~~~~~~~~~~~~~~~V~FfG 64 (153)
T 4fu6_A 21 RDFKPGDLIFAKMKG--YPHWPARVDEVPDGAVKPPTNKLPIFFFG 64 (153)
T ss_dssp GGCCTTCEEEECCTT--SCCEEEEECCCC---CCCCTTCEEEEETT
T ss_pred cCCCCCCEEEEeCCC--CCCCCEEEeEchhhccCCCCCEEEEEecC
Confidence 478999999999987 68999999876443110 11357777773
No 45
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=57.61 E-value=12 Score=22.39 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=24.3
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEe
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~ 50 (162)
.|++||.|+-.=++ +..+|-++|.+|-.
T Consensus 9 ~~~vgd~VmaRW~G-d~~yYparI~Si~s 36 (66)
T 2l8d_A 9 KYADGEVVMGRWPG-SVLYYEVQVTSYDD 36 (66)
T ss_dssp SSCSSCEEEEECTT-SSCEEEEEEEEEET
T ss_pred EeecCCEEEEEcCC-CccceEEEEEEecc
Confidence 78999999998855 48899999999993
No 46
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=57.21 E-value=8.5 Score=24.58 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=30.0
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecC-CCCeEEEEEEEe
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA-RGANVKVHVRWY 64 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~-~g~~~~v~v~Wf 64 (162)
..+++||.|...-.. -+.|-|+|.++-... ......+.|+||
T Consensus 4 ~~f~~GdlVwaK~~g--~p~WPa~V~~~~~~~~k~~~~~~~V~FF 46 (94)
T 3qby_A 4 HAFKPGDLVFAKMKG--YPHWPARIDDIADGAVKPPPNKYPIFFF 46 (94)
T ss_dssp CCCCTTCEEEECCTT--SCCEEEEECCCCTTSBCCCTTCEEEEET
T ss_pred CcCccCCEEEEecCC--CCCCCEEEeecccccccCCCCEEEEEEE
Confidence 368999999999987 689999999864321 001145777877
No 47
>3zte_A Tryptophan operon RNA-binding attenuation protein; RNA-binding protein, transcription factors, trinucleotide RE; HET: TRP; 2.41A {Bacillus licheniformis} SCOP: b.82.5.1
Probab=56.79 E-value=12 Score=22.98 Aligned_cols=48 Identities=17% Similarity=0.150 Sum_probs=36.3
Q ss_pred EEEEEeecccccCCcccccCCCCeeEEecceecCccCcEEeeeEEEec
Q 031269 59 VHVRWYYRPEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKCTVHSF 106 (162)
Q Consensus 59 v~v~Wfyrp~e~~~~~~~~~~~~Elf~s~~~d~~~~~~I~gkc~V~~~ 106 (162)
|.|.=+-|..||...-..-.+..||.....++..++--|+|++.|+..
T Consensus 21 V~VIGltRG~dtkfhHtEkLdkGEVmIaQFTehtsaiKiRGkA~I~t~ 68 (78)
T 3zte_A 21 VNVIGLTRGTDTRFHHSEKLDKGEVMICQFTEHTSAIKVRGEALIQTA 68 (78)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEET
T ss_pred eEEEEeeccCCcccceehccCCCcEEEEEeecceeEEEEeeeEEEEec
Confidence 556666677776422222257899999999999999999999999874
No 48
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=55.73 E-value=13 Score=21.24 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=32.0
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeecc
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRP 67 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~~v~v~Wfyrp 67 (162)
.+.+||.|.|..+. -.-+.|.|.++.... +. ..+.+..|-|.
T Consensus 4 ~~~~Gd~V~V~~Gp--f~g~~g~v~~v~~~k-~~-v~V~v~~~Gr~ 45 (58)
T 1nz9_A 4 AFREGDQVRVVSGP--FADFTGTVTEINPER-GK-VKVMVTIFGRE 45 (58)
T ss_dssp SCCTTCEEEECSGG--GTTCEEEEEEEETTT-TE-EEEEEESSSSE
T ss_pred ccCCCCEEEEeecC--CCCcEEEEEEEcCCC-CE-EEEEEEeCCCE
Confidence 56899999999987 577899999997542 33 66777777554
No 49
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=55.33 E-value=13 Score=23.74 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=17.5
Q ss_pred EEEc-CCCcEEccCCEEEEecCC
Q 031269 14 YTVK-SISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~-g~~~~~~vGD~V~v~~~~ 35 (162)
+.++ |....++.||.+++.++.
T Consensus 62 ~~i~~g~~~~l~~GD~i~ip~g~ 84 (101)
T 1o5u_A 62 VTTEDGKKYVIEKGDLVTFPKGL 84 (101)
T ss_dssp EEETTCCEEEEETTCEEEECTTC
T ss_pred EEECCCCEEEECCCCEEEECCCC
Confidence 4566 665688999999999886
No 50
>1gtf_A Trp RNA-binding attenuation protein (trap); RNA binding protein-RNA complex, transcription attenuation, RNA-binding protein, Trp RNA; HET: TRP; 1.75A {Bacillus stearothermophilus} SCOP: b.82.5.1 PDB: 1c9s_A* 1gtn_A* 1qaw_A* 1utd_A* 1utf_A* 1utv_A* 2zp8_A* 3aqd_A 2zcz_A* 2zp9_A* 2zd0_A* 2ext_A* 2exs_A* 1wap_A*
Probab=55.27 E-value=13 Score=22.37 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=36.7
Q ss_pred EEEEEeecccccCCcccccCCCCeeEEecceecCccCcEEeeeEEEec
Q 031269 59 VHVRWYYRPEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKCTVHSF 106 (162)
Q Consensus 59 v~v~Wfyrp~e~~~~~~~~~~~~Elf~s~~~d~~~~~~I~gkc~V~~~ 106 (162)
|.|.=+-|..||...-..-.+..||...-..+--++-.|+||+.|+..
T Consensus 17 V~viGLTRG~dTkFhHtEKLDkGEVmiaQFTehTSAiKiRGka~i~t~ 64 (74)
T 1gtf_A 17 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTR 64 (74)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEET
T ss_pred eEEEEeccCCcccccchhhcCCCcEEEEEeccceeeEEEeccEEEEee
Confidence 566667777777633222257899999999999999999999999874
No 51
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=54.94 E-value=14 Score=24.56 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=16.5
Q ss_pred EE-cCCCcEEccCCEEEEecCCC
Q 031269 15 TV-KSISKTIKPGDCVLMRPSEP 36 (162)
Q Consensus 15 ~~-~g~~~~~~vGD~V~v~~~~~ 36 (162)
++ +|....++.||++++.++.+
T Consensus 82 ~~~~g~~~~l~~GD~~~ip~g~~ 104 (123)
T 3bcw_A 82 VDPDGTVHAVKAGDAFIMPEGYT 104 (123)
T ss_dssp ECTTCCEEEEETTCEEEECTTCC
T ss_pred EECCCeEEEECCCCEEEECCCCe
Confidence 44 44446889999999999873
No 52
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=54.61 E-value=7.4 Score=27.10 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=32.1
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecCCC--CeEEEEEEEee
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDARG--ANVKVHVRWYY 65 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g--~~~~v~v~Wfy 65 (162)
..+++||.|...-.. -+.|-|+|.+....... ....+.|+||-
T Consensus 10 ~~~~~GDlVWaKvkG--yPwWPa~V~~~~~~~~~~~~~~~~~V~FFG 54 (147)
T 1khc_A 10 KEFGIGDLVWGKIKG--FSWWPAMVVSWKATSKRQAMPGMRWVQWFG 54 (147)
T ss_dssp SSCCTTCEEEEEETT--TEEEEEEEECGGGTTSCCCCTTEEEEEETT
T ss_pred ccCcCCCEEEEecCC--cCCCCEEeccchhhhcccCCCCeEEEEEec
Confidence 488999999999977 68999999887554211 11467888884
No 53
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=53.72 E-value=16 Score=21.95 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=24.6
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEe
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~ 50 (162)
.|.+||.|+-+=.. +..+|-++|.+|-.
T Consensus 12 ~f~vgd~VmaRW~G-d~~yYparItSits 39 (68)
T 2dig_A 12 KFADGEVVRGRWPG-SSLYYEVEILSHDS 39 (68)
T ss_dssp SSCSSCEEEEECTT-TCCEEEEEEEEEET
T ss_pred EeecCCEEEEEccC-CccceEEEEEEecc
Confidence 78999999998774 48899999999993
No 54
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.58 E-value=7.9 Score=22.49 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=32.1
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeec
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYR 66 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~~v~v~Wfyr 66 (162)
..+.+||.|.|..+. -.-+.|.|+++..+ . ..+.+.-|-|
T Consensus 6 ~~f~~GD~V~V~~Gp--f~g~~G~V~evd~e---~-v~V~v~~fg~ 45 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGE--LINLQGKILSVDGN---K-ITIMPKHEDL 45 (59)
T ss_dssp SSCCTTSEEEECSST--TTTCEEEECCCBTT---E-EEEEECCSSC
T ss_pred ccCCCCCEEEEeecC--CCCCEEEEEEEeCC---E-EEEEEEecCC
Confidence 368999999999998 68899999998742 3 7777766655
No 55
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=49.05 E-value=33 Score=21.98 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=23.9
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 52 (162)
.|.+|+.|++..+ ...+-|+|+++....
T Consensus 25 ~~~vG~kv~v~~~---~~~yeAeIl~ir~~~ 52 (94)
T 2rnz_A 25 DIIIKCQCWVQKN---DEERLAEILSINTRK 52 (94)
T ss_dssp GCCTTEEEEEECS---SCEEEEEEEEEECSS
T ss_pred cccCCCEEEEEEC---CEEEEEEEEEEEEcC
Confidence 6899999999963 479999999999864
No 56
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=48.28 E-value=20 Score=21.51 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=29.3
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEee
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYY 65 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~~v~v~Wfy 65 (162)
.+++||-|+..=+| ..+|-|+|.+|-.+ ....|.++-
T Consensus 6 ~~~vGd~vmArW~D--~~yYpA~I~si~~~-----~~Y~V~F~d 42 (67)
T 3p8d_A 6 EFQINEQVLACWSD--CRFYPAKVTAVNKD-----GTYTVKFYD 42 (67)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEECTT-----SEEEEEETT
T ss_pred ccccCCEEEEEcCC--CCEeeEEEEEECCC-----CeEEEEEeC
Confidence 57999999999855 78999999999875 236666653
No 57
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=48.00 E-value=15 Score=23.72 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=17.6
Q ss_pred EEEcCCC--cEEccCCEEEEecCC
Q 031269 14 YTVKSIS--KTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g~~--~~~~vGD~V~v~~~~ 35 (162)
++++|.. ..++.||+++|.+..
T Consensus 66 l~~~~~~~~~~l~~Gd~i~ipa~~ 89 (112)
T 2opk_A 66 IECEGDTAPRVMRPGDWLHVPAHC 89 (112)
T ss_dssp EEETTCSSCEEECTTEEEEECTTC
T ss_pred EEECCEEEEEEECCCCEEEECCCC
Confidence 4566665 688999999999876
No 58
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=47.82 E-value=9.6 Score=24.87 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=32.0
Q ss_pred CCCcEEccCCEEEEecCCCCCCCeEEEEeEEEecC------CCCeEEEEEEEee
Q 031269 18 SISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDA------RGANVKVHVRWYY 65 (162)
Q Consensus 18 g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~------~g~~~~v~v~Wfy 65 (162)
|.|..+++||.|...-.. -+.|-|+|.+..... ......+.|+||-
T Consensus 4 ~~g~~~~~GdlVwaK~~g--~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg 55 (110)
T 2daq_A 4 GSSGKLHYKQIVWVKLGN--YRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFG 55 (110)
T ss_dssp SCCCSCCSSEEEEEECSS--SCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETT
T ss_pred CCCCCCCCCCEEEEEeCC--CCCCceeeCChhhCCHHHhhccCCCCcEEEEEec
Confidence 445588999999999987 689999998773211 1111347777774
No 59
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=47.24 E-value=14 Score=24.23 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=17.9
Q ss_pred EEEcCCCcEEccCCEEEEecCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (162)
++++|....++.||+|+|.++.
T Consensus 72 ~~~~g~~~~l~~GD~v~ip~g~ 93 (119)
T 3lwc_A 72 VSTDGETVTAGPGEIVYMPKGE 93 (119)
T ss_dssp EEETTEEEEECTTCEEEECTTC
T ss_pred EEECCEEEEECCCCEEEECCCC
Confidence 4567766788999999999987
No 60
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=45.18 E-value=12 Score=20.61 Aligned_cols=19 Identities=26% Similarity=0.754 Sum_probs=13.1
Q ss_pred ecCCCCCCCcceeecCCCCC
Q 031269 143 KCEMPYNPDDLMVQCEGCSD 162 (162)
Q Consensus 143 ~c~~~~npd~~~~~C~~c~~ 162 (162)
+|.++.+ ...++.|++|..
T Consensus 5 vC~~~~~-~~~ll~Cd~C~~ 23 (51)
T 1f62_A 5 VCRKKGE-DDKLILCDECNK 23 (51)
T ss_dssp TTCCSSC-CSCCEECTTTCC
T ss_pred CCCCCCC-CCCEEECCCCCh
Confidence 4666654 347889999863
No 61
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=45.10 E-value=15 Score=25.64 Aligned_cols=22 Identities=5% Similarity=0.220 Sum_probs=18.1
Q ss_pred EEEcCCCcEEccCCEEEEecCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (162)
++++|....++.||+++|.++.
T Consensus 97 l~i~g~~~~l~~GD~i~iP~G~ 118 (151)
T 4axo_A 97 IIIDGRKVSASSGELIFIPKGS 118 (151)
T ss_dssp EEETTEEEEEETTCEEEECTTC
T ss_pred EEECCEEEEEcCCCEEEECCCC
Confidence 4567776788999999999986
No 62
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=45.09 E-value=19 Score=19.60 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=14.7
Q ss_pred CCCCCCCcceeecCCCCC
Q 031269 145 EMPYNPDDLMVQCEGCSD 162 (162)
Q Consensus 145 ~~~~npd~~~~~C~~c~~ 162 (162)
..|..++..|.-|.+|.+
T Consensus 8 ~~ple~~~~YRvC~~Cgk 25 (44)
T 2lo3_A 8 EDPLDKPIQYRVCEKCGK 25 (44)
T ss_dssp CCCCCCCCCEEECTTTCC
T ss_pred hcccCccccchhhcccCC
Confidence 347778889999999975
No 63
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=44.60 E-value=16 Score=23.86 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=30.9
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecC------CCCeEEEEEEEee
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA------RGANVKVHVRWYY 65 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~------~g~~~~v~v~Wfy 65 (162)
..+++||.|...-.. -+.|-|+|..-..-. ......+.|++|-
T Consensus 4 ~~~~~GdlVwaK~~g--yP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg 52 (108)
T 2l89_A 4 DRLNFGDRILVKAPG--YPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFP 52 (108)
T ss_dssp CCCCTTEEEEEECSS--SCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETT
T ss_pred CcccCCCEEEEEeCC--cCCCceEecCcccCcHHHhhccCCCCeEEEEECC
Confidence 478999999999987 689999997643211 1113677888774
No 64
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=43.67 E-value=45 Score=22.62 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=25.2
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 52 (162)
..|.+|+.|++.-.+ ...|-|+|+++....
T Consensus 11 ~~~~vGe~v~~~~~d--~~~y~AkIl~i~~~~ 40 (133)
T 1wgs_A 11 VTVEIGETYLCRRPD--STWHSAEVIQSRVND 40 (133)
T ss_dssp CCCCTTSEEEEEETT--TEEEEEEEEEEEEET
T ss_pred cccCCCCEEEEEeCC--CCEEEEEEEEEEecc
Confidence 368999999999875 578999999998753
No 65
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=43.60 E-value=10 Score=25.31 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=24.6
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 52 (162)
.++.||.|.|.++. +.--.|+|.++....
T Consensus 15 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~~ 43 (115)
T 2zjr_R 15 HFKKGDTVIVLSGK--HKGQTGKVLLALPRD 43 (115)
T ss_dssp SSCTTSEEECCSSS--STTCEEEEEEEETTT
T ss_pred cccCCCEEEEeEcC--CCCcEEEEEEEECCC
Confidence 57899999999987 567889999998653
No 66
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.62 E-value=20 Score=21.17 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=24.9
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEec
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~ 51 (162)
-.+.+||.|+..=.| ...|.|.|.++...
T Consensus 6 ~~f~eGqdVLarWsD--GlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 6 SGLTEGQYVLCRWTD--GLYYLGKIKRVSSS 34 (63)
T ss_dssp CCCCTTCEEEEECTT--SCEEEEEECCCCST
T ss_pred cceecCCEEEEEecC--CCEEEEEEEEEecC
Confidence 378999999999766 68999999999865
No 67
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=40.80 E-value=19 Score=24.16 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=18.1
Q ss_pred EEEcCCCcEEccCCEEEEecCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (162)
++++|....++.||++++.++.
T Consensus 88 l~~~g~~~~l~~GD~i~~p~g~ 109 (133)
T 2pyt_A 88 VRHEGETMIAKAGDVMFIPKGS 109 (133)
T ss_dssp EEETTEEEEEETTCEEEECTTC
T ss_pred EEECCEEEEECCCcEEEECCCC
Confidence 5667766788999999999987
No 68
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=40.01 E-value=31 Score=23.14 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=25.4
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 52 (162)
..++.||.|.|.++. +.--.|+|.++....
T Consensus 41 ~~IkkGD~V~Vi~G~--dKGk~GkV~~V~~k~ 70 (120)
T 1vq8_T 41 VRVNAGDTVEVLRGD--FAGEEGEVINVDLDK 70 (120)
T ss_dssp EECCTTCEEEECSST--TTTCEEEEEEEETTT
T ss_pred ccccCCCEEEEEecC--CCCCEEEEEEEECCC
Confidence 378999999999987 566899999999653
No 69
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=38.81 E-value=27 Score=21.99 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=18.1
Q ss_pred EEEcCCCcEEccCCEEEEecCCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSEP 36 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~~ 36 (162)
+.++|....++.||++++.++.+
T Consensus 71 ~~i~~~~~~l~~Gd~i~i~~~~~ 93 (114)
T 2ozj_A 71 ITFDDQKIDLVPEDVLMVPAHKI 93 (114)
T ss_dssp EEETTEEEEECTTCEEEECTTCC
T ss_pred EEECCEEEEecCCCEEEECCCCc
Confidence 45666666789999999999874
No 70
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=38.21 E-value=32 Score=23.58 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=32.8
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeecc
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRP 67 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~~v~v~Wfyrp 67 (162)
.+.+||.|-|..+. -.-+.|.|.++..+. +. ..|.+.-|-|+
T Consensus 91 ~~~~Gd~VrI~~Gp--f~g~~g~V~~vd~~k-~~-v~V~v~~~gr~ 132 (152)
T 3p8b_B 91 GLEPGDLVEVIAGP--FKGQKAKVVKIDESK-DE-VVVQFIDAIVP 132 (152)
T ss_dssp TCCTTCEEEECSST--TTTCEEEEEEEETTT-TE-EEEEESSCSSC
T ss_pred cCCCCCEEEEeeec--CCCCEEEEEEEeCCC-CE-EEEEEEeccee
Confidence 67899999999986 577899999998753 33 66777777664
No 71
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=37.31 E-value=52 Score=21.34 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=24.0
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 52 (162)
.|.+|+-|++.-+ ...|-|+|+++....
T Consensus 22 ~f~vGekVl~~~~---~~~YeAkIl~v~~~~ 49 (102)
T 2f5k_A 22 KFQEGERVLCFHG---PLLYEAKCVKVAIKD 49 (102)
T ss_dssp SCCTTCEEEEESS---SSEEEEEEEEEEEET
T ss_pred ccCCCCEEEEEEC---CEEEEEEEEEEEEcC
Confidence 6899999999884 479999999999753
No 72
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.18 E-value=41 Score=22.60 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=24.9
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 52 (162)
..++.||.|.|.++. +.--.|+|.++....
T Consensus 44 ~~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~k~ 73 (121)
T 3j21_U 44 LPVRVGDKVRIMRGD--YKGHEGKVVEVDLKR 73 (121)
T ss_dssp EECCSSSEEEECSSS--CSSEEEEEEEEETTT
T ss_pred cccccCCEEEEeecC--CCCcEeEEEEEEecC
Confidence 377899999999997 466689999998653
No 73
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=36.62 E-value=32 Score=20.77 Aligned_cols=29 Identities=28% Similarity=0.264 Sum_probs=23.7
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEec
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~ 51 (162)
+.+++||.|-|..+. ..--.|.|.++..+
T Consensus 16 K~F~~GDHVkVi~G~--~~getGlVV~v~~d 44 (69)
T 2do3_A 16 KYFKMGDHVKVIAGR--FEGDTGLIVRVEEN 44 (69)
T ss_dssp SSCCTTCEEEESSST--TTTCEEEEEEECSS
T ss_pred eeccCCCeEEEeccE--EcCceEEEEEEeCC
Confidence 478999999999986 56678888888754
No 74
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=36.18 E-value=28 Score=23.09 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=16.6
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEe
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~ 50 (162)
.+.+||.|.|...+- ..--|.|+.+..
T Consensus 70 ~i~~GD~V~ve~~~~--~~~kG~I~~~~~ 96 (117)
T 2oqk_A 70 WVNPGDIVLVSLRDF--QDSKGDIILKYT 96 (117)
T ss_dssp CCCTTCEEEEEECTT--CTTEEEEEEECC
T ss_pred cCCCCCEEEEEEEcC--CCCeEEEEEEec
Confidence 345888888877631 123566766665
No 75
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=35.54 E-value=56 Score=20.52 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=29.4
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEe
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWY 64 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~~v~v~Wf 64 (162)
..+++||-|+-.=.| ..+|-|+|.+|-.+ + ...|.++
T Consensus 20 ~~f~vGd~VlArW~D--~~yYPAkI~sV~~~--~---~YtV~F~ 56 (85)
T 3qii_A 20 SEFQINEQVLACWSD--CRFYPAKVTAVNKD--G---TYTVKFY 56 (85)
T ss_dssp -CCCTTCEEEEECTT--SCEEEEEEEEECTT--S---EEEEEET
T ss_pred cccccCCEEEEEeCC--CCEeeEEEEEECCC--C---eEEEEEe
Confidence 478999999999855 78999999999876 2 3666665
No 76
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=34.86 E-value=26 Score=24.75 Aligned_cols=22 Identities=14% Similarity=-0.061 Sum_probs=16.7
Q ss_pred EEEcCCCcEEccCCEEEEecCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (162)
++++|....+..||+++|.+..
T Consensus 123 vtl~g~~~~L~~Gds~~iP~g~ 144 (166)
T 2vpv_A 123 VTVCKNKFLSVKGSTFQIPAFN 144 (166)
T ss_dssp EEETTEEEEEETTCEEEECTTC
T ss_pred EEECCEEEEEcCCCEEEECCCC
Confidence 5666666677888999988876
No 77
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=34.68 E-value=40 Score=22.25 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=24.5
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 52 (162)
.++.||.|.|.++. +.--.|+|.++....
T Consensus 6 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~~ 34 (110)
T 3v2d_Y 6 HVKKGDTVLVASGK--YKGRVGKVKEVLPKK 34 (110)
T ss_dssp SCCTTSEEEECSST--TTTCEEEEEEEEGGG
T ss_pred ccCCCCEEEEeEcC--CCCeEeEEEEEECCC
Confidence 67899999999997 466679999998764
No 78
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=34.34 E-value=32 Score=20.75 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=15.2
Q ss_pred EEcCCCcEEccCCEEEEecCC
Q 031269 15 TVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 15 ~~~g~~~~~~vGD~V~v~~~~ 35 (162)
.++|....++.||.+++.++.
T Consensus 63 ~~~~~~~~l~~Gd~~~ip~~~ 83 (105)
T 1v70_A 63 RVGEEEALLAPGMAAFAPAGA 83 (105)
T ss_dssp EETTEEEEECTTCEEEECTTS
T ss_pred EECCEEEEeCCCCEEEECCCC
Confidence 445555577889999888875
No 79
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=33.56 E-value=26 Score=21.06 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=18.4
Q ss_pred CceeeecCCCC-CCCcceeecCCCCC
Q 031269 138 VAVYCKCEMPY-NPDDLMVQCEGCSD 162 (162)
Q Consensus 138 ~~~~C~c~~~~-npd~~~~~C~~c~~ 162 (162)
.....+|.+.. ..+..++.|++|..
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD~C~~ 41 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCDMCNL 41 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECSSSCC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCC
Confidence 34567788875 45678999999963
No 80
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=33.16 E-value=19 Score=25.28 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=16.8
Q ss_pred EEEcCCCcEEccCCEEEEecCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (162)
+.++|....++.||+|+|.++.
T Consensus 81 v~idge~~~l~~GD~v~IPpg~ 102 (157)
T 4h7l_A 81 IELNGQSYPLTKLLAISIPPLV 102 (157)
T ss_dssp EEETTEEEECCTTEEEEECTTC
T ss_pred EEECCEEEEeCCCCEEEECCCC
Confidence 4456655577999999999987
No 81
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=32.23 E-value=1.5e+02 Score=22.07 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=31.9
Q ss_pred EEccCCEEEEecCCC--CCCCeEEEEeEEEecCCCCeEEEEEEEeec
Q 031269 22 TIKPGDCVLMRPSEP--SKPSYVAKIERIESDARGANVKVHVRWYYR 66 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~--~~~~~Ig~I~~i~~~~~g~~~~v~v~Wfyr 66 (162)
.+++||.|+-..-+. +....||+|.++..+.++-...+.|.=+..
T Consensus 169 ~i~~GD~VvTSGl~gifP~GipVG~V~~V~~~~~~~~~~i~v~P~ad 215 (255)
T 2j5u_A 169 KFKKGQKVVTSGLGGKFPAGIFIGTIEKVETDKMGLSQTAFIKPGAD 215 (255)
T ss_dssp CCCTTCEEEECCTTSSSCTTCEEEEEEEEEECTTSSEEEEEEEESSC
T ss_pred CCCCCCEEEECCCCCcCCCCCEEEEEEEEeeCCCCceEEEEEEECCC
Confidence 789999888766442 355789999999998766545566555433
No 82
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=32.10 E-value=97 Score=19.59 Aligned_cols=22 Identities=9% Similarity=0.250 Sum_probs=16.5
Q ss_pred EEEcCCCcEEccCCEEEEecCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (162)
+.++|....++.||.++|.++.
T Consensus 67 ~~i~~~~~~l~~Gd~~~i~~~~ 88 (128)
T 4i4a_A 67 IRINDEDFPVTKGDLIIIPLDS 88 (128)
T ss_dssp EEETTEEEEEETTCEEEECTTC
T ss_pred EEECCEEEEECCCcEEEECCCC
Confidence 4456655677899999998876
No 83
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=32.06 E-value=1e+02 Score=19.92 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=28.5
Q ss_pred EcCCCcEEccCCEEEEecCCC--CCCCeEEEEeEEEecC
Q 031269 16 VKSISKTIKPGDCVLMRPSEP--SKPSYVAKIERIESDA 52 (162)
Q Consensus 16 ~~g~~~~~~vGD~V~v~~~~~--~~~~~Ig~I~~i~~~~ 52 (162)
++|....|.+|+-|+..-+++ ....|=|+|+++....
T Consensus 13 ~~~~~~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~ 51 (101)
T 3m9q_A 13 LRDETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERR 51 (101)
T ss_dssp CCCCCCCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEE
T ss_pred hccCCCcccCCCEEEEEecCCCCCCcceEeEEEEEEecC
Confidence 455556899999999998642 1467999999998853
No 84
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=32.00 E-value=28 Score=22.30 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=17.2
Q ss_pred EEEcCCCcEEccCCEEEEecCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (162)
+.++|....++.||.+++.++.
T Consensus 69 ~~i~~~~~~l~~Gd~i~ip~~~ 90 (114)
T 3fjs_A 69 IGVDGAQRRLHQGDLLYLGAGA 90 (114)
T ss_dssp EEETTEEEEECTTEEEEECTTC
T ss_pred EEECCEEEEECCCCEEEECCCC
Confidence 4566665678899999998876
No 85
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=31.98 E-value=32 Score=21.36 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=17.7
Q ss_pred EEEcC-CCcEEccCCEEEEecCCC
Q 031269 14 YTVKS-ISKTIKPGDCVLMRPSEP 36 (162)
Q Consensus 14 ~~~~g-~~~~~~vGD~V~v~~~~~ 36 (162)
+.++| ....++.||.+++.++..
T Consensus 61 ~~~~~~~~~~l~~Gd~~~ip~~~~ 84 (107)
T 2i45_A 61 VDFADGGSMTIREGEMAVVPKSVS 84 (107)
T ss_dssp EEETTSCEEEECTTEEEEECTTCC
T ss_pred EEECCCcEEEECCCCEEEECCCCc
Confidence 45666 556889999999998863
No 86
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.95 E-value=45 Score=20.98 Aligned_cols=41 Identities=15% Similarity=0.026 Sum_probs=27.8
Q ss_pred EEccCCEEEEecC--CCCCCCeEEEEeEEEecCCCCeEEEEEE
Q 031269 22 TIKPGDCVLMRPS--EPSKPSYVAKIERIESDARGANVKVHVR 62 (162)
Q Consensus 22 ~~~vGD~V~v~~~--~~~~~~~Ig~I~~i~~~~~g~~~~v~v~ 62 (162)
.|.+|+-|++.-. +.....+-|+|+++....+....+|+-.
T Consensus 9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~ 51 (87)
T 2eko_A 9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYI 51 (87)
T ss_dssp SCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEEC
T ss_pred cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeC
Confidence 7899999999863 1125788999999987543322444433
No 87
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=31.60 E-value=46 Score=20.96 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=17.3
Q ss_pred EEEcCCCc-EEccCCEEEEecCC
Q 031269 14 YTVKSISK-TIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g~~~-~~~vGD~V~v~~~~ 35 (162)
+.++|... .++.||.+++.++.
T Consensus 60 ~~i~~~~~~~l~~Gd~i~ip~~~ 82 (117)
T 2b8m_A 60 LTLEDQEPHNYKEGNIVYVPFNV 82 (117)
T ss_dssp EEETTSCCEEEETTCEEEECTTC
T ss_pred EEECCEEEEEeCCCCEEEECCCC
Confidence 45666667 88999999998876
No 88
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=31.53 E-value=37 Score=21.29 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=16.6
Q ss_pred EEEcCCCcEEccCCEEEEecCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (162)
+.++|....+..||.+++.++.
T Consensus 67 ~~~~~~~~~l~~Gd~~~ip~~~ 88 (116)
T 2pfw_A 67 VNVDGVIKVLTAGDSFFVPPHV 88 (116)
T ss_dssp EEETTEEEEECTTCEEEECTTC
T ss_pred EEECCEEEEeCCCCEEEECcCC
Confidence 4456655678899999998876
No 89
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=31.47 E-value=50 Score=22.32 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEccCCEEEEecCCCC-CCC--eEEEEeEEE
Q 031269 22 TIKPGDCVLMRPSEPS-KPS--YVAKIERIE 49 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~-~~~--~Ig~I~~i~ 49 (162)
.+.+||-|.|.+...+ .+. |.|+|.++.
T Consensus 60 ~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k 90 (128)
T 3h8z_A 60 EITEGDEVEVYSRANEQEPCGWWLARVRMMK 90 (128)
T ss_dssp CCCTTCEEEEEECC---CCCEEEEEEEEEEE
T ss_pred CCCCCCEEEEEecCCCCCcCccEEEEEEEee
Confidence 6789999999886422 233 799998887
No 90
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=30.72 E-value=80 Score=18.18 Aligned_cols=30 Identities=33% Similarity=0.418 Sum_probs=23.8
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEec
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~ 51 (162)
..+++||.+...=.+ +...|=|+|+++..+
T Consensus 7 ~~~~vGd~c~A~~s~-Dg~wYrA~I~~v~~~ 36 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSE-DGQCYEAEIEEIDEE 36 (64)
T ss_dssp SCCCTTCEEEEECTT-TSSEEEEEEEEEETT
T ss_pred CCCCCCCEEEEEECC-CCCEEEEEEEEEcCC
Confidence 468999999988643 267889999999863
No 91
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=30.64 E-value=43 Score=23.23 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=24.6
Q ss_pred cEEccCCEEEEecCCCCCCCeE-EEEeEEEecC
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYV-AKIERIESDA 52 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I-g~I~~i~~~~ 52 (162)
..|+.||.|.|.++. +.--. |+|..+....
T Consensus 47 ~~IkkGD~V~Vi~Gk--dKGk~~GkV~~V~~k~ 77 (145)
T 2zkr_t 47 MPIRKDDEVQVVRGH--YKGQQIGKVVQVYRKK 77 (145)
T ss_dssp CBCCTTCEEEECSST--TTTCCSEEEEEEETTT
T ss_pred cccCCCCEEEEeecC--CCCcceeEEEEEECCC
Confidence 378999999999997 45566 9999998653
No 92
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=30.27 E-value=48 Score=21.51 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=23.6
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEec
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~ 51 (162)
.++.||.|.|.++. +.--.|+|.++...
T Consensus 3 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~ 30 (102)
T 3r8s_U 3 KIRRDDEVIVLTGK--DKGKRGKVKNVLSS 30 (102)
T ss_dssp SSCSSCEEEECSSS--STTCEEEEEEEETT
T ss_pred CccCCCEEEEeEcC--CCCeeeEEEEEEeC
Confidence 46899999999997 56668999999875
No 93
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.09 E-value=34 Score=21.35 Aligned_cols=23 Identities=17% Similarity=0.538 Sum_probs=17.2
Q ss_pred eeeecCCCCCC-CcceeecCCCCC
Q 031269 140 VYCKCEMPYNP-DDLMVQCEGCSD 162 (162)
Q Consensus 140 ~~C~c~~~~np-d~~~~~C~~c~~ 162 (162)
...+|.....+ +..+++|+.|..
T Consensus 18 ~C~vC~~~~~~~~~~ll~CD~C~~ 41 (88)
T 1wev_A 18 ACVVCRQMTVASGNQLVECQECHN 41 (88)
T ss_dssp SCSSSCCCCCCTTCCEEECSSSCC
T ss_pred cCCCCCCCCCCCCCceEECCCCCC
Confidence 45678877653 678999999963
No 94
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=29.83 E-value=36 Score=23.42 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=17.5
Q ss_pred EEEcCCCcEEccCCEEEEecCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (162)
++++|....++.||+|+|.+..
T Consensus 77 v~v~g~~~~l~~Gd~i~ip~~~ 98 (156)
T 3kgz_A 77 CLVGETISDVAQGDLVFIPPMT 98 (156)
T ss_dssp EEETTEEEEEETTCEEEECTTC
T ss_pred EEECCEEEEeCCCCEEEECCCC
Confidence 4667766678999999998876
No 95
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.77 E-value=59 Score=19.70 Aligned_cols=28 Identities=39% Similarity=0.431 Sum_probs=23.9
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEe
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~ 50 (162)
..+++||.|+-.=.| ...|-|+|+++..
T Consensus 8 ~~~kvGd~clA~wsD--g~~Y~A~I~~v~~ 35 (74)
T 2equ_A 8 FDFKAGEEVLARWTD--CRYYPAKIEAINK 35 (74)
T ss_dssp CCCCTTCEEEEECSS--SSEEEEEEEEEST
T ss_pred CCCCCCCEEEEECCC--CCEEEEEEEEECC
Confidence 368999999998874 7899999999964
No 96
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=29.27 E-value=40 Score=21.07 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=16.2
Q ss_pred EEEcCCCcEEccCCEEEEecCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (162)
+.++|....+..||.+++.++.
T Consensus 73 ~~~~~~~~~l~~Gd~~~ip~~~ 94 (115)
T 1yhf_A 73 ITIDQETYRVAEGQTIVMPAGI 94 (115)
T ss_dssp EEETTEEEEEETTCEEEECTTS
T ss_pred EEECCEEEEECCCCEEEECCCC
Confidence 3455555677899999988876
No 97
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=28.69 E-value=58 Score=22.03 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=24.3
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 52 (162)
..|+.||.|.|.++.. .--.|+|..++...
T Consensus 48 ~~IkkgD~V~Vi~Gkd--KGk~GkV~~V~~kk 77 (127)
T 3u5e_Y 48 LPIRRDDEVLVVRGSK--KGQEGKISSVYRLK 77 (127)
T ss_dssp EECCTTCEEEECSSTT--TTCEEEEEEEEGGG
T ss_pred ccccCCCEEEEeecCC--CCccceEEEEECCC
Confidence 3778999999999973 44469999998753
No 98
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=28.62 E-value=42 Score=23.40 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=25.7
Q ss_pred EEEcCCCcEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeecccccCCcc
Q 031269 14 YTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGR 74 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~~~ 74 (162)
+.++|....++.||++++.++.+ .- + .+. +. ..+ +.|+..|.....+.
T Consensus 139 ~~~~~~~~~l~~GD~i~i~~~~~----H~-----~-~n~-~~-~~~-~l~v~~~~~~~~~~ 186 (192)
T 1y9q_A 139 VFFDEQWHELQQGEHIRFFSDQP----HG-----Y-AAV-TE-KAV-FQNIVAYPRREGGS 186 (192)
T ss_dssp EEETTEEEEECTTCEEEEECSSS----EE-----E-EES-SS-CEE-EEEEEECCC-----
T ss_pred EEECCEEEEeCCCCEEEEcCCCC----eE-----e-ECC-CC-CcE-EEEEEecCcccCCc
Confidence 44566556789999999988762 11 1 112 22 234 77777766555443
No 99
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=28.45 E-value=35 Score=21.00 Aligned_cols=21 Identities=10% Similarity=0.340 Sum_probs=14.7
Q ss_pred EEcCCCcEEccCCEEEEecCC
Q 031269 15 TVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 15 ~~~g~~~~~~vGD~V~v~~~~ 35 (162)
.++|....++.||.+++.++.
T Consensus 58 ~~~~~~~~l~~Gd~~~i~~~~ 78 (113)
T 2gu9_A 58 IVDGHTQALQAGSLIAIERGQ 78 (113)
T ss_dssp EETTEEEEECTTEEEEECTTC
T ss_pred EECCEEEEeCCCCEEEECCCC
Confidence 445554577888888888775
No 100
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=28.28 E-value=8.1 Score=18.15 Aligned_cols=8 Identities=50% Similarity=1.070 Sum_probs=5.6
Q ss_pred eecCCCCC
Q 031269 155 VQCEGCSD 162 (162)
Q Consensus 155 ~~C~~c~~ 162 (162)
.+|+.|+|
T Consensus 6 ffcetcsk 13 (26)
T 1loi_A 6 FFCETCSK 13 (26)
T ss_dssp HHHHTSSC
T ss_pred HHHHhcCC
Confidence 36888875
No 101
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=28.18 E-value=68 Score=21.41 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=23.3
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEe
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~ 50 (162)
.+++||.|+.+..+ ..+|=|+|+++-.
T Consensus 5 ~v~vGq~V~akh~n--gryy~~~V~~~~~ 31 (118)
T 2qqr_A 5 SITAGQKVISKHKN--GRFYQCEVVRLTT 31 (118)
T ss_dssp CCCTTCEEEEECTT--SSEEEEEEEEEEE
T ss_pred eeccCCEEEEECCC--CCEEeEEEEEEee
Confidence 67999999988876 6889999999855
No 102
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=28.06 E-value=31 Score=21.06 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=24.1
Q ss_pred EEccCCEEEEecCC-CCCCCeEEEEeEEEecC
Q 031269 22 TIKPGDCVLMRPSE-PSKPSYVAKIERIESDA 52 (162)
Q Consensus 22 ~~~vGD~V~v~~~~-~~~~~~Ig~I~~i~~~~ 52 (162)
.+.+|+-|++.-.+ .....+-|+|+++....
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~ 36 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEIDD 36 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEET
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEccC
Confidence 67899999999764 12467999999988753
No 103
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=27.85 E-value=50 Score=19.01 Aligned_cols=23 Identities=30% Similarity=0.731 Sum_probs=16.3
Q ss_pred eeeecCCCCC-CCcceeecCCCCC
Q 031269 140 VYCKCEMPYN-PDDLMVQCEGCSD 162 (162)
Q Consensus 140 ~~C~c~~~~n-pd~~~~~C~~c~~ 162 (162)
...+|..... .+..++.|++|..
T Consensus 8 ~C~vC~~~~~~~~~~ll~Cd~C~~ 31 (66)
T 2yt5_A 8 VCTICQEEYSEAPNEMVICDKCGQ 31 (66)
T ss_dssp CBSSSCCCCCBTTBCEEECSSSCC
T ss_pred CCCCCCCCCCCCCCCEEECCCCCh
Confidence 4457777643 4679999999963
No 104
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=27.80 E-value=43 Score=22.63 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=15.8
Q ss_pred EEEcCCCcEEccCCEEEEecC
Q 031269 14 YTVKSISKTIKPGDCVLMRPS 34 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~ 34 (162)
+.++|....++.||++++.++
T Consensus 81 ~~~~~~~~~l~~Gd~i~i~~~ 101 (162)
T 3l2h_A 81 LTMENDQYPIAPGDFVGFPCH 101 (162)
T ss_dssp EEETTEEEEECTTCEEEECTT
T ss_pred EEECCEEEEeCCCCEEEECCC
Confidence 345555567889999999987
No 105
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=27.27 E-value=44 Score=20.06 Aligned_cols=15 Identities=27% Similarity=0.656 Sum_probs=10.6
Q ss_pred CCCCcceeecC--CCCC
Q 031269 148 YNPDDLMVQCE--GCSD 162 (162)
Q Consensus 148 ~npd~~~~~C~--~c~~ 162 (162)
..+....|||+ +|.|
T Consensus 12 ~~~~~~WVQCd~p~C~K 28 (69)
T 2e61_A 12 FGQCLVWVQCSFPNCGK 28 (69)
T ss_dssp CCCCCCEEECSSTTTCC
T ss_pred CCCCCeEEEeCccccCc
Confidence 34567778888 7875
No 106
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=27.17 E-value=45 Score=23.08 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=17.3
Q ss_pred EEEcCCCcEEccCCEEEEecCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (162)
+.++|....++.||+|+|.++.
T Consensus 89 ~~i~~~~~~l~~Gd~i~ip~~~ 110 (167)
T 3ibm_A 89 VVLDDRVEPLTPLDCVYIAPHA 110 (167)
T ss_dssp EEETTEEEEECTTCEEEECTTC
T ss_pred EEECCEEEEECCCCEEEECCCC
Confidence 4566665678999999999886
No 107
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=26.86 E-value=32 Score=22.02 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=15.5
Q ss_pred EE-cCCCcEEccCCEEEEecCC
Q 031269 15 TV-KSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 15 ~~-~g~~~~~~vGD~V~v~~~~ 35 (162)
.+ +|....++.||++++.++.
T Consensus 74 ~~~~~~~~~l~~Gd~~~i~~~~ 95 (125)
T 3h8u_A 74 HQGNGIVTHLKAGDIAIAKPGQ 95 (125)
T ss_dssp ECSTTCEEEEETTEEEEECTTC
T ss_pred EECCCeEEEeCCCCEEEECCCC
Confidence 45 5555577889999988876
No 108
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=26.57 E-value=39 Score=21.63 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=16.3
Q ss_pred EEEcCCCcEEccCCEEEEecCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (162)
+.++|....++.||.+++.++.
T Consensus 61 ~~i~~~~~~l~~Gd~i~i~~~~ 82 (125)
T 3cew_A 61 ITIDGEKIELQAGDWLRIAPDG 82 (125)
T ss_dssp EEETTEEEEEETTEEEEECTTC
T ss_pred EEECCEEEEeCCCCEEEECCCC
Confidence 3456655678899999988876
No 109
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=26.27 E-value=64 Score=22.48 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=24.3
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 52 (162)
..|+.||.|.|.++.. .--.|+|..++...
T Consensus 47 ~~IkKGD~V~Vi~Gkd--KGk~GkVl~V~~kk 76 (150)
T 3iz5_Y 47 IPIRKDDEVQVVRGSY--KGREGKVVQVYRRR 76 (150)
T ss_dssp EECCSSSEEEECSSTT--TTCEEEEEEEETTT
T ss_pred cccCCCCEEEEeecCC--CCccceEEEEEcCC
Confidence 3789999999999973 44579999998753
No 110
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=25.83 E-value=49 Score=22.99 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=17.5
Q ss_pred EEEcCCCcEEccCCEEEEecCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (162)
+.++|....+..||+|+|.+..
T Consensus 86 ~~v~g~~~~l~~GD~i~ip~g~ 107 (166)
T 3jzv_A 86 AMVGRAVSAVAPYDLVTIPGWS 107 (166)
T ss_dssp EEETTEEEEECTTCEEEECTTC
T ss_pred EEECCEEEEeCCCCEEEECCCC
Confidence 5667766678899999998876
No 111
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=25.49 E-value=46 Score=24.18 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=18.9
Q ss_pred EEEcCCCcEEccCCEEEEecCCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSEP 36 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~~ 36 (162)
++++|....++.||++++.++.+
T Consensus 70 ~~i~~~~~~l~~Gd~~~~p~~~~ 92 (227)
T 3rns_A 70 IFIENNKKTISNGDFLEITANHN 92 (227)
T ss_dssp EEESSCEEEEETTEEEEECSSCC
T ss_pred EEECCEEEEECCCCEEEECCCCC
Confidence 56777767899999999999863
No 112
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=25.48 E-value=42 Score=21.38 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=16.6
Q ss_pred EEEcCCCcEEccCCEEEEecCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (162)
+.++|....++.||.+++.++.
T Consensus 74 ~~~~~~~~~l~~Gd~~~ip~~~ 95 (126)
T 4e2g_A 74 LTIGEETRVLRPGMAYTIPGGV 95 (126)
T ss_dssp EEETTEEEEECTTEEEEECTTC
T ss_pred EEECCEEEEeCCCCEEEECCCC
Confidence 3456665678999999998876
No 113
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=25.43 E-value=36 Score=20.61 Aligned_cols=23 Identities=9% Similarity=0.223 Sum_probs=16.7
Q ss_pred EEEcCCCcEEccCCEEEEecCCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSEP 36 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~~ 36 (162)
+.++|....+..||.+++.++..
T Consensus 63 ~~~~~~~~~l~~Gd~~~ip~~~~ 85 (102)
T 3d82_A 63 IAFRDQNITLQAGEMYVIPKGVE 85 (102)
T ss_dssp EECSSCEEEEETTEEEEECTTCC
T ss_pred EEECCEEEEEcCCCEEEECCCCe
Confidence 34455556788999999988763
No 114
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=24.94 E-value=41 Score=22.07 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=14.9
Q ss_pred EEcCCCcEEccCCEEEEecCC
Q 031269 15 TVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 15 ~~~g~~~~~~vGD~V~v~~~~ 35 (162)
.++|....+..||++++.++.
T Consensus 92 ~i~~~~~~l~~Gd~i~i~~~~ 112 (133)
T 1o4t_A 92 HDNGKDVPIKAGDVCFTDSGE 112 (133)
T ss_dssp EETTEEEEEETTEEEEECTTC
T ss_pred EECCEEEEeCCCcEEEECCCC
Confidence 445555577888888888775
No 115
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=24.62 E-value=76 Score=21.71 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=24.1
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031269 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 52 (162)
..|+.||.|.|.++.. .--.|.|..++...
T Consensus 47 ~~IkkgD~V~Vi~Gkd--KGk~GkV~~V~~kk 76 (135)
T 4a17_S 47 MPVRKDDEVLIVRGKF--KGNKGKVTQVYRKK 76 (135)
T ss_dssp EECCTTCEEEECSSTT--TTCEEEEEEEETTT
T ss_pred ccccCCCEEEEeecCC--CCceeeEEEEEcCC
Confidence 3679999999999973 44569999998753
No 116
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=24.19 E-value=97 Score=16.98 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=19.6
Q ss_pred EccCCEEEEecCCCCCCCeEEEEeEEEec
Q 031269 23 IKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (162)
Q Consensus 23 ~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~ 51 (162)
+++||.+...=+++ ...|=|+|.++..+
T Consensus 2 wk~G~~c~A~~s~D-g~wYrA~I~~i~~~ 29 (54)
T 3s6w_A 2 WKPGDECFALYWED-NKFYRAEVEALHSS 29 (54)
T ss_dssp CCTTCEEEEEETTT-TEEEEEEEEEC--C
T ss_pred CCCCCEEEEEECCC-CCEEEEEEEEEeCC
Confidence 47899888885431 56788999998754
No 117
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.70 E-value=58 Score=21.40 Aligned_cols=15 Identities=40% Similarity=0.590 Sum_probs=12.2
Q ss_pred cEEccCCEEEEecCC
Q 031269 21 KTIKPGDCVLMRPSE 35 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~ 35 (162)
..+..||.|.|...+
T Consensus 52 IwI~~GD~VlVe~~~ 66 (111)
T 2dgy_A 52 IWIKRGDFLIVDPIE 66 (111)
T ss_dssp CCCCSSCEEEEEECS
T ss_pred EEEcCCCEEEEEecc
Confidence 367899999998865
No 118
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=23.38 E-value=65 Score=22.39 Aligned_cols=22 Identities=5% Similarity=0.075 Sum_probs=15.8
Q ss_pred EEEcC----CCcEEccCCEEEEecCC
Q 031269 14 YTVKS----ISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g----~~~~~~vGD~V~v~~~~ 35 (162)
+.++| ....++.||++++.++.
T Consensus 153 ~~~~~~~~~~~~~l~~GD~~~~~~~~ 178 (198)
T 2bnm_A 153 MKWGDKENPKEALLPTGASMFVEEHV 178 (198)
T ss_dssp EEESCTTSCEEEEECTTCEEEECTTC
T ss_pred EEECCcCCcccEEECCCCEEEeCCCC
Confidence 44555 44577889999887776
No 119
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=23.31 E-value=1e+02 Score=17.32 Aligned_cols=28 Identities=32% Similarity=0.159 Sum_probs=21.7
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEe
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~ 50 (162)
.+++||.+...=.++ ...|=|+|.++..
T Consensus 3 ~~~~G~~c~A~~s~D-g~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWSED-GCIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECTTT-SCEEEEEEEEEET
T ss_pred cCCcCCEEEEEECCC-CCEEEEEEEEEcC
Confidence 578999888885431 5788999999954
No 120
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=23.27 E-value=53 Score=20.03 Aligned_cols=22 Identities=5% Similarity=0.048 Sum_probs=14.9
Q ss_pred EEEcC--CCcEEccCCEEEEecCC
Q 031269 14 YTVKS--ISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g--~~~~~~vGD~V~v~~~~ 35 (162)
+.+++ ....++.||++++.++.
T Consensus 52 ~~~~~g~~~~~l~~Gd~~~~p~~~ 75 (97)
T 2fqp_A 52 LETPEGSVTSQLTRGVSYTRPEGV 75 (97)
T ss_dssp EEETTEEEEEEECTTCCEEECTTC
T ss_pred EEeCCCCEEEEEcCCCEEEeCCCC
Confidence 34554 34577888888888765
No 121
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=22.96 E-value=65 Score=21.22 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=16.3
Q ss_pred EEEcCCCcEEccCCEEEEecCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (162)
+.++|....++.||.++|.++.
T Consensus 51 ~~i~~~~~~l~~Gd~~~i~p~~ 72 (164)
T 2arc_A 51 VKNQGREFVCRPGDILLFPPGE 72 (164)
T ss_dssp EEETTEEEEECTTCEEEECTTC
T ss_pred EEECCEEEEecCCeEEEEcCCC
Confidence 3455555677899999998876
No 122
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=22.88 E-value=49 Score=24.54 Aligned_cols=23 Identities=9% Similarity=0.158 Sum_probs=17.9
Q ss_pred EEEcCCCcEEccCCEEEEecCCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSEP 36 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~~ 36 (162)
++++|....++.||++++.++.+
T Consensus 94 ~~~~~~~~~L~~Gd~~~~~~~~~ 116 (261)
T 1rc6_A 94 AKAEGKTFALSEGGYLYCPPGSL 116 (261)
T ss_dssp EEETTEEEEEETTEEEEECTTCC
T ss_pred EEECCEEEEECCCCEEEECCCCC
Confidence 45666666889999999998863
No 123
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=22.84 E-value=49 Score=20.38 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=14.9
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEe
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIE 46 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~ 46 (162)
.+.+||.|.|...+ .+..=|+|+
T Consensus 53 ~Il~GD~V~ve~~~--yd~~kgrIi 75 (79)
T 3i4o_A 53 RILPEDRVVVELSP--YDLSRGRIV 75 (79)
T ss_dssp CCCTTCEEEEEEET--TEEEEEEEE
T ss_pred cCCCCCEEEEEECc--cCCCcEEEE
Confidence 56778888877765 235556664
No 124
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=22.51 E-value=69 Score=20.73 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=19.1
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEe
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~ 50 (162)
.+..||.|.|...+- +...=|+|+..+.
T Consensus 58 wI~~GD~VlVe~~~y-d~~~Kg~Iv~r~~ 85 (102)
T 1jt8_A 58 WVREGDVVIVKPWEV-QGDQKCDIIWRYT 85 (102)
T ss_dssp CCCSCEEEEECCBCC-TTSEEEEEEEESS
T ss_pred EecCCCEEEEEeccC-CCCceEEEEEEeC
Confidence 578999999998763 2244577766653
No 125
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=22.40 E-value=34 Score=16.44 Aligned_cols=10 Identities=40% Similarity=0.913 Sum_probs=7.5
Q ss_pred ceeecCCCCC
Q 031269 153 LMVQCEGCSD 162 (162)
Q Consensus 153 ~~~~C~~c~~ 162 (162)
.-+||+-|+.
T Consensus 5 f~vqcpvcqq 14 (29)
T 3vhs_A 5 FQVQCPVCQQ 14 (29)
T ss_dssp CEEECTTTCC
T ss_pred eeeeChHHHH
Confidence 4579999973
No 126
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=21.88 E-value=1.6e+02 Score=20.59 Aligned_cols=46 Identities=15% Similarity=0.041 Sum_probs=31.8
Q ss_pred cEEccCCEEEEecCCC--CCCCeEEEEeEEEecCCCCeEEEEEEEeec
Q 031269 21 KTIKPGDCVLMRPSEP--SKPSYVAKIERIESDARGANVKVHVRWYYR 66 (162)
Q Consensus 21 ~~~~vGD~V~v~~~~~--~~~~~Ig~I~~i~~~~~g~~~~v~v~Wfyr 66 (162)
..++.||.|.-..-+. +....||+|.++..+.++-...+.+.=+..
T Consensus 107 ~~i~~GD~vvTSGl~g~fP~GipVG~V~~v~~~~~~~~~~i~v~p~ad 154 (172)
T 2qf4_A 107 SDISAGDKVTTGGLGNFNVADIPVGEVVATTHSTDYLTREVTVKLSAD 154 (172)
T ss_dssp CCCCTTCEEEEECCSSSCCEEEEEEEEEEEESTTCSSCCEEEEEESCC
T ss_pred CCCCCCCEEEECCCCCcCCCCCEEEEEEEEecCCCCcEEEEEEEECCC
Confidence 3689999888766542 234579999999988765445666665543
No 127
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=21.69 E-value=1.1e+02 Score=21.26 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=33.6
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeeccc
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPE 68 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~~v~v~Wfyrp~ 68 (162)
.+.+||.|.|..+. -.-+.|.|+++..+. +. ..|.+..|-|.-
T Consensus 127 ~~~~Gd~V~V~~GP--f~g~~G~v~~v~~~k-~r-~~V~v~ifgr~t 169 (181)
T 2jvv_A 127 LFEPGEMVRVNDGP--FADFNGVVEEVDYEK-SR-LKVSVSIFGRAT 169 (181)
T ss_dssp CCCTTEEEEECSST--TTTEEEEEEEEETTT-TE-EEEEEEETTEEE
T ss_pred cCCCCCEEEEeccC--CCCcEEEEEEEeCCC-CE-EEEEEEECCCCE
Confidence 56799999999886 577999999998643 33 777888886643
No 128
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=21.60 E-value=32 Score=22.31 Aligned_cols=12 Identities=17% Similarity=0.794 Sum_probs=9.2
Q ss_pred CCcceeecCCCC
Q 031269 150 PDDLMVQCEGCS 161 (162)
Q Consensus 150 pd~~~~~C~~c~ 161 (162)
---.++||++|+
T Consensus 34 ~GvViv~C~gC~ 45 (100)
T 2e2z_A 34 KGTVLISCPHCK 45 (100)
T ss_dssp TSEEEEECTTTC
T ss_pred CCEEEEEcCCCc
Confidence 344789999996
No 129
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=21.08 E-value=69 Score=21.90 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=15.6
Q ss_pred EEEcCCCcEEccCCEEEEecC
Q 031269 14 YTVKSISKTIKPGDCVLMRPS 34 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~ 34 (162)
+.++|....++.||++++.++
T Consensus 78 ~~~~~~~~~l~~GD~i~ip~~ 98 (163)
T 3i7d_A 78 LVDDQGEHPMVPGDCAAFPAG 98 (163)
T ss_dssp EEETTEEEEECTTCEEEECTT
T ss_pred EEECCEEEEeCCCCEEEECCC
Confidence 345555567789999999988
No 130
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=20.77 E-value=49 Score=20.29 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=13.2
Q ss_pred CCCcEEccCCEEEEecCC
Q 031269 18 SISKTIKPGDCVLMRPSE 35 (162)
Q Consensus 18 g~~~~~~vGD~V~v~~~~ 35 (162)
|....++.||.+++.++.
T Consensus 73 ~~~~~l~~Gd~~~ip~~~ 90 (110)
T 2q30_A 73 DAVIPAPRGAVLVAPIST 90 (110)
T ss_dssp GCEEEECTTEEEEEETTS
T ss_pred CEEEEECCCCEEEeCCCC
Confidence 344577888888888876
No 131
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=20.41 E-value=59 Score=23.97 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=18.1
Q ss_pred EEEcCCCcEEccCCEEEEecCCC
Q 031269 14 YTVKSISKTIKPGDCVLMRPSEP 36 (162)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~~ 36 (162)
++++|....++.||++++.++.+
T Consensus 81 ~~~~~~~~~l~~Gd~~~~p~~~~ 103 (246)
T 1sfn_A 81 VAVGGETRTLREYDYVYLPAGEK 103 (246)
T ss_dssp EECSSCEEEECTTEEEEECTTCC
T ss_pred EEECCEEEEECCCCEEEECCCCC
Confidence 45666666889999999999873
No 132
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=20.26 E-value=1.6e+02 Score=17.92 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=21.2
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEe
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~ 50 (162)
.+++||.|.|..++ ....-..|.+|+.
T Consensus 29 ~f~~GD~iEi~~P~--g~~~~~~v~~m~d 55 (89)
T 4he6_A 29 HFRPGDEVEFFGPE--IENFTQVIEKIWD 55 (89)
T ss_dssp CBCTTCEEEEESTT--SCCEEEECCCEEE
T ss_pred CcCCCCEEEEEcCC--CCcEEEEeHHeEc
Confidence 78999999988776 4566777888874
No 133
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=20.20 E-value=1.2e+02 Score=20.46 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=19.7
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEe
Q 031269 22 TIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (162)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~ 50 (162)
.+++||+|++..+.. ......+|.+|..
T Consensus 91 ~l~~GD~v~~~~~~~-~~~~~~~V~~v~~ 118 (145)
T 1at0_A 91 RIEEKNQVLVRDVET-GELRPQRVVKVGS 118 (145)
T ss_dssp GCCTTCEEEEECTTT-CCEEEEEEEEEEE
T ss_pred HCcCCCEEEEecCCC-CCEEEEEEEEEEE
Confidence 679999999998732 3455666776654
No 134
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=20.06 E-value=52 Score=20.07 Aligned_cols=12 Identities=42% Similarity=0.816 Sum_probs=10.4
Q ss_pred EccCCEEEEecC
Q 031269 23 IKPGDCVLMRPS 34 (162)
Q Consensus 23 ~~vGD~V~v~~~ 34 (162)
.++||+|+|..+
T Consensus 36 ~~vGD~VLVH~G 47 (75)
T 2z1c_A 36 TKPGDWVIVHTG 47 (75)
T ss_dssp CCTTCEEEEETT
T ss_pred CCCCCEEEEecc
Confidence 489999999876
Done!