BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031270
         (162 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
          Length = 320

 Score = 28.5 bits (62), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 73  SVVCAGGSVIISPSGT-VLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPE---V 128
           +V C GG   I  +GT VL GP+ +   ++   + +G        FDV     R     V
Sbjct: 201 AVACVGGCQAILDTGTSVLFGPSSD---ILKIQMAIGATENRYGEFDVNCGNLRSMPTVV 257

Query: 129 LSLVVRDHPATPVTYTSASVKTEGGLCIT 157
             +  RD+P +P  YTS     + G C +
Sbjct: 258 FEINGRDYPLSPSAYTSK----DQGFCTS 282


>pdb|3TZW|A Chain A, Crystal Structure Of A Fragment Containing The
           Acyltransferase Domain Of Pks13 From Mycobacterium
           Tuberculosis In The Orthorhombic Apoform At 2.6 A
 pdb|3TZX|A Chain A, Crystal Structure Of A Fragment Containing The
           Acyltransferase Domain Of Pks13 From Mycobacterium
           Tuberculosis In Tetragonal Apo Form At 2.3 A
 pdb|3TZX|B Chain B, Crystal Structure Of A Fragment Containing The
           Acyltransferase Domain Of Pks13 From Mycobacterium
           Tuberculosis In Tetragonal Apo Form At 2.3 A
 pdb|3TZY|A Chain A, Crystal Structure Of A Fragment Containing The
           Acyltransferase Domain Of Pks13 From Mycobacterium
           Tuberculosis In The Palmitoylated Form At 2.2 A
 pdb|3TZY|B Chain B, Crystal Structure Of A Fragment Containing The
           Acyltransferase Domain Of Pks13 From Mycobacterium
           Tuberculosis In The Palmitoylated Form At 2.2 A
 pdb|3TZZ|A Chain A, Crystal Structure Of A Fragment Containing The
           Acyltransferase Domain Of Pks13 From Mycobacterium
           Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
 pdb|3TZZ|B Chain B, Crystal Structure Of A Fragment Containing The
           Acyltransferase Domain Of Pks13 From Mycobacterium
           Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
          Length = 491

 Score = 26.9 bits (58), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 14/120 (11%)

Query: 10  GKGIEIYCAPTADSRDVWQA--SMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEE 67
           G+    Y A     RD  +A  S +H+  EG   +    ++ R        EY    I E
Sbjct: 232 GEAASAYFAGGLSLRDATRAICSRSHLMGEGEAMLF--GEYIRLMALV---EYSADEIRE 286

Query: 68  DLT--PDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSR 125
             +  PD  VC    V  +P+ TV+ GP  + +A+++     G+ AR KFA     H S+
Sbjct: 287 VFSDFPDLEVC----VYAAPTQTVIGGPPEQVDAILARAEAEGKFAR-KFATKGASHTSQ 341


>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
           Aeruginosa.
 pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
           Aeruginosa, With Bound Mfa
          Length = 301

 Score = 26.9 bits (58), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 92  GPNYEGEALISADLD-LGEIAREKFAFDVVGHYSRPEVLSLVVRDHPATPVTYTSASV 148
           G +Y   AL    L+ +G++  E+FA  V+GH     V   +  DHP     + S +V
Sbjct: 78  GADYSKAALARDQLETMGQLGFERFA--VIGHDRGARVGYRLALDHPQAVAAFVSLTV 133


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.137    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,351,296
Number of Sequences: 62578
Number of extensions: 219045
Number of successful extensions: 495
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 9
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)