Query 031270
Match_columns 162
No_of_seqs 202 out of 1347
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 11:43:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02504 nitrilase 100.0 3.7E-31 8E-36 221.2 15.8 152 1-152 191-342 (346)
2 KOG0805 Carbon-nitrogen hydrol 100.0 7.8E-31 1.7E-35 206.6 11.8 151 1-151 184-334 (337)
3 KOG0807 Carbon-nitrogen hydrol 99.9 2.6E-26 5.7E-31 180.3 8.1 111 2-132 176-291 (295)
4 cd07564 nitrilases_CHs Nitrila 99.9 1.7E-25 3.6E-30 183.0 12.7 130 1-135 162-297 (297)
5 cd07587 ML_beta-AS mammalian-l 99.9 5.4E-25 1.2E-29 185.1 11.5 127 1-132 230-360 (363)
6 PLN00202 beta-ureidopropionase 99.9 9.1E-25 2E-29 185.9 10.5 130 1-135 251-384 (405)
7 PRK10438 C-N hydrolase family 99.9 9.6E-23 2.1E-27 163.7 11.7 107 1-129 146-255 (256)
8 cd07565 aliphatic_amidase alip 99.9 1.1E-22 2.3E-27 166.4 11.6 113 1-138 158-273 (291)
9 TIGR03381 agmatine_aguB N-carb 99.9 1.6E-22 3.5E-27 163.0 11.5 113 1-130 155-277 (279)
10 cd07580 nitrilase_2 Uncharacte 99.9 1.5E-22 3.2E-27 162.8 10.4 108 1-129 149-268 (268)
11 PRK13286 amiE acylamide amidoh 99.9 4E-22 8.6E-27 166.7 11.6 110 1-135 171-283 (345)
12 PLN02747 N-carbamolyputrescine 99.9 4.7E-22 1E-26 162.3 11.0 123 1-136 161-293 (296)
13 cd07568 ML_beta-AS_like mammal 99.9 4.8E-22 1E-26 161.3 10.9 113 1-131 167-283 (287)
14 cd07569 DCase N-carbamyl-D-ami 99.9 5.5E-22 1.2E-26 162.5 9.2 111 1-132 176-300 (302)
15 PLN02798 nitrilase 99.9 1.9E-21 4.2E-26 158.2 11.2 110 1-130 168-283 (286)
16 cd07577 Ph0642_like Pyrococcus 99.9 2.3E-21 5.1E-26 155.1 10.2 112 1-129 146-259 (259)
17 cd07579 nitrilase_1_R2 Second 99.9 1.3E-21 2.9E-26 159.1 8.3 102 1-130 141-269 (279)
18 cd07573 CPA N-carbamoylputresc 99.8 5E-21 1.1E-25 154.8 10.7 114 1-131 156-281 (284)
19 PRK13287 amiF formamidase; Pro 99.8 7.1E-21 1.5E-25 158.5 11.7 111 1-136 170-283 (333)
20 cd07576 R-amidase_like Pseudom 99.8 8.3E-21 1.8E-25 151.0 11.2 105 1-127 147-254 (254)
21 cd07586 nitrilase_8 Uncharacte 99.8 1.1E-20 2.4E-25 151.7 11.4 109 1-130 148-266 (269)
22 cd07585 nitrilase_7 Uncharacte 99.8 2.2E-20 4.7E-25 149.5 12.1 108 1-129 145-261 (261)
23 COG0388 Predicted amidohydrola 99.8 2.5E-20 5.5E-25 150.4 11.7 111 1-130 154-269 (274)
24 cd07584 nitrilase_6 Uncharacte 99.8 3.7E-20 8E-25 147.9 12.2 102 1-122 151-255 (258)
25 cd07574 nitrilase_Rim1_like Un 99.8 4.1E-20 8.8E-25 149.4 11.7 111 1-128 158-280 (280)
26 cd07583 nitrilase_5 Uncharacte 99.8 6.9E-20 1.5E-24 145.9 11.2 103 1-125 148-253 (253)
27 cd07582 nitrilase_4 Uncharacte 99.8 9.4E-20 2E-24 148.8 12.0 105 1-121 178-287 (294)
28 cd07572 nit Nit1, Nit 2, and r 99.8 2.3E-19 5.1E-24 143.5 11.0 102 1-122 158-263 (265)
29 cd07567 biotinidase_like bioti 99.8 2E-19 4.4E-24 147.9 8.1 90 1-113 185-281 (299)
30 cd07578 nitrilase_1_R1 First n 99.8 4.6E-19 1E-23 141.9 9.5 101 2-128 152-258 (258)
31 cd07575 Xc-1258_like Xanthomon 99.8 2.4E-18 5.3E-23 137.4 11.1 100 1-122 145-247 (252)
32 cd07581 nitrilase_3 Uncharacte 99.8 3.5E-18 7.6E-23 136.1 11.6 99 1-125 152-255 (255)
33 cd07570 GAT_Gln-NAD-synth Glut 99.7 7.2E-18 1.6E-22 134.9 7.6 99 2-122 151-255 (261)
34 cd07197 nitrilase Nitrilase su 99.7 2.7E-16 5.7E-21 124.3 12.1 97 1-118 148-247 (253)
35 PRK13981 NAD synthetase; Provi 99.6 3.6E-15 7.8E-20 131.2 9.9 89 1-109 150-243 (540)
36 KOG0806 Carbon-nitrogen hydrol 99.6 2.5E-15 5.4E-20 122.2 5.6 112 2-134 177-296 (298)
37 KOG0808 Carbon-nitrogen hydrol 99.5 1.6E-14 3.5E-19 115.3 7.0 126 1-131 240-369 (387)
38 cd07571 ALP_N-acyl_transferase 99.5 1.5E-13 3.2E-18 111.2 8.8 80 1-109 165-251 (270)
39 PRK02628 nadE NAD synthetase; 99.4 7.4E-13 1.6E-17 119.5 10.7 103 2-125 184-295 (679)
40 PLN02339 NAD+ synthase (glutam 99.4 2.3E-12 4.9E-17 116.6 9.5 101 1-122 179-289 (700)
41 cd07566 ScNTA1_like Saccharomy 99.3 4.6E-12 1E-16 104.0 4.8 64 2-85 182-266 (295)
42 PRK00302 lnt apolipoprotein N- 99.2 8.2E-11 1.8E-15 102.9 8.5 79 1-108 385-470 (505)
43 TIGR00546 lnt apolipoprotein N 98.7 2.8E-08 6.1E-13 84.3 6.6 59 2-89 326-391 (391)
44 COG0815 Lnt Apolipoprotein N-a 98.3 2.4E-06 5.1E-11 75.4 8.8 77 2-107 397-480 (518)
45 PRK12291 apolipoprotein N-acyl 97.3 0.00057 1.2E-08 58.9 5.8 39 11-49 359-404 (418)
46 KOG2303 Predicted NAD synthase 96.6 0.0076 1.7E-07 52.9 6.9 90 7-117 187-285 (706)
47 cd07583 nitrilase_5 Uncharacte 81.2 9.7 0.00021 29.8 7.5 65 6-91 26-105 (253)
48 cd07572 nit Nit1, Nit 2, and r 81.0 9.6 0.00021 30.0 7.5 68 5-91 24-108 (265)
49 PF00795 CN_hydrolase: Carbon- 80.4 7.4 0.00016 28.8 6.3 64 5-90 27-113 (186)
50 PLN02798 nitrilase 80.4 12 0.00025 30.3 7.9 68 5-91 35-118 (286)
51 cd07581 nitrilase_3 Uncharacte 80.3 11 0.00023 29.6 7.5 66 5-91 23-105 (255)
52 TIGR03381 agmatine_aguB N-carb 80.2 10 0.00022 30.1 7.5 65 5-91 25-109 (279)
53 cd07568 ML_beta-AS_like mammal 79.7 10 0.00022 30.4 7.3 64 6-90 37-120 (287)
54 cd07584 nitrilase_6 Uncharacte 79.1 13 0.00027 29.3 7.6 65 6-90 26-109 (258)
55 cd07576 R-amidase_like Pseudom 79.1 14 0.0003 28.8 7.8 65 5-91 25-105 (254)
56 cd07564 nitrilases_CHs Nitrila 76.3 17 0.00036 29.5 7.7 67 4-92 25-120 (297)
57 PLN00202 beta-ureidopropionase 74.4 14 0.00031 31.8 7.0 67 6-91 120-205 (405)
58 cd07566 ScNTA1_like Saccharomy 73.7 21 0.00045 29.3 7.6 62 11-91 35-115 (295)
59 cd07582 nitrilase_4 Uncharacte 72.9 21 0.00046 28.8 7.5 62 11-91 41-123 (294)
60 cd07569 DCase N-carbamyl-D-ami 72.4 21 0.00045 29.0 7.4 69 5-91 31-122 (302)
61 cd07571 ALP_N-acyl_transferase 71.7 18 0.00039 28.9 6.8 65 7-91 34-104 (270)
62 PLN02747 N-carbamolyputrescine 70.5 21 0.00046 28.8 7.0 40 5-44 31-90 (296)
63 cd07573 CPA N-carbamoylputresc 70.3 30 0.00065 27.5 7.7 67 4-91 24-110 (284)
64 cd07587 ML_beta-AS mammalian-l 68.5 26 0.00057 29.7 7.3 68 5-91 96-184 (363)
65 PLN02504 nitrilase 67.8 31 0.00067 29.0 7.5 39 31-91 110-148 (346)
66 cd07197 nitrilase Nitrilase su 67.7 35 0.00076 26.3 7.5 65 5-91 24-106 (253)
67 cd07574 nitrilase_Rim1_like Un 66.1 28 0.00061 27.6 6.8 41 6-46 28-92 (280)
68 cd07567 biotinidase_like bioti 62.7 48 0.001 27.3 7.6 16 29-44 91-106 (299)
69 cd07585 nitrilase_7 Uncharacte 58.9 65 0.0014 25.2 7.6 42 5-46 25-82 (261)
70 cd07565 aliphatic_amidase alip 58.8 62 0.0013 26.3 7.6 62 11-91 38-116 (291)
71 cd07579 nitrilase_1_R2 Second 58.3 63 0.0014 26.0 7.5 40 6-45 25-77 (279)
72 cd07578 nitrilase_1_R1 First n 56.8 57 0.0012 25.6 7.0 41 6-46 27-85 (258)
73 cd07575 Xc-1258_like Xanthomon 54.5 68 0.0015 25.1 7.0 60 8-90 29-102 (252)
74 PF10087 DUF2325: Uncharacteri 52.8 39 0.00085 22.7 4.7 42 9-50 45-86 (97)
75 TIGR01019 sucCoAalpha succinyl 46.6 62 0.0013 26.6 5.7 50 2-51 77-126 (286)
76 PRK05678 succinyl-CoA syntheta 41.2 83 0.0018 25.9 5.7 49 2-50 79-127 (291)
77 PLN02673 quinolinate synthetas 40.6 7.7 0.00017 35.8 -0.5 68 80-148 230-303 (724)
78 PF09857 DUF2084: Uncharacteri 36.4 40 0.00087 22.7 2.5 38 80-117 21-58 (85)
79 PF10492 Nrf1_activ_bdg: Nrf1 35.6 20 0.00043 24.0 1.0 13 149-161 23-35 (82)
80 PF09142 TruB_C: tRNA Pseudour 35.5 31 0.00067 21.2 1.8 17 77-93 26-42 (56)
81 PF13186 SPASM: Iron-sulfur cl 32.2 86 0.0019 18.5 3.5 28 78-105 5-32 (64)
82 PRK03147 thiol-disulfide oxido 31.4 1.7E+02 0.0036 21.1 5.6 16 77-92 139-154 (173)
83 KOG2096 WD40 repeat protein [G 31.0 1E+02 0.0023 26.2 4.7 65 78-145 231-298 (420)
84 TIGR02608 delta_60_rpt delta-6 27.6 1E+02 0.0022 18.9 3.2 29 78-106 3-35 (55)
85 PRK08660 L-fuculose phosphate 26.5 23 0.00049 26.8 0.1 58 78-138 30-90 (181)
86 KOG2733 Uncharacterized membra 25.7 1.8E+02 0.0038 25.3 5.2 79 25-117 119-210 (423)
87 PRK13687 hypothetical protein; 24.2 71 0.0015 21.5 2.1 37 80-116 21-57 (85)
88 cd01424 MGS_CPS_II Methylglyox 23.4 1.9E+02 0.0042 19.5 4.4 44 2-45 57-101 (110)
89 cd06353 PBP1_BmpA_Med_like Per 23.2 2.1E+02 0.0046 22.6 5.2 39 3-47 170-208 (258)
90 PHA01633 putative glycosyl tra 23.0 2.1E+02 0.0046 24.0 5.3 40 9-51 220-259 (335)
91 cd00411 Asparaginase Asparagin 22.4 2.6E+02 0.0056 23.2 5.7 48 2-50 223-273 (323)
92 PF14439 Bd3614-deam: Bd3614-l 21.9 78 0.0017 22.9 2.1 36 80-115 12-49 (136)
93 PF08140 Cuticle_1: Crustacean 21.8 1.3E+02 0.0028 17.4 2.6 16 78-93 1-16 (40)
94 PLN00125 Succinyl-CoA ligase [ 21.7 2.4E+02 0.0052 23.4 5.2 50 2-51 83-133 (300)
95 PF13580 SIS_2: SIS domain; PD 20.5 1.8E+02 0.0039 20.7 3.9 36 10-45 101-136 (138)
96 PF00993 MHC_II_alpha: Class I 20.1 45 0.00098 22.1 0.6 29 75-108 8-36 (82)
No 1
>PLN02504 nitrilase
Probab=99.97 E-value=3.7e-31 Score=221.16 Aligned_cols=152 Identities=84% Similarity=1.400 Sum_probs=127.0
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccccee
Q 031270 1 MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGS 80 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~G~S 80 (162)
.||++|.|+++||+||++|++++..+|+.++++||+||+||||+||++|.++.++...+....+.+.....+.+.|.|+|
T Consensus 191 fPe~~r~la~~Gadii~~p~~~~~~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~G~~~~~~~~~~~~~G~S 270 (346)
T PLN02504 191 MPLLRTAMYAKGIEIYCAPTADSRETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFSGTEEDLTPDSIVCAGGS 270 (346)
T ss_pred hHHHHHHHHHCCCeEEEECCCCCchhHHHHHHHHHHccCcEEEEecccccccccCcccccccccccccccccccccCcce
Confidence 48999999999999999999998899999999999999999999999986543322110000011111112446789999
Q ss_pred EEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecCcCCCceEEcCCCccccC
Q 031270 81 VIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDHPATPVTYTSASVKTEG 152 (162)
Q Consensus 81 ~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (162)
+|++|+|++|+++...+|++++||||++.+.+.|..+|+++||+|||+|+++++.++++|+.+.++.+|.|.
T Consensus 271 ~IvdP~G~vla~~~~~~e~il~adiDl~~i~~~R~~~~~~~~~~r~d~~~l~~~~~~~~~~~~~~~~~~~~~ 342 (346)
T PLN02504 271 VIISPSGTVLAGPNYEGEGLITADLDLGEIARAKFDFDVVGHYSRPDVLSLTVNEHPLKPVTFTSSPEKAED 342 (346)
T ss_pred EEECCCCCEecCCCCCCCcEEEEEEcHHHHHHHHhhCCccccCCCCcceEEEEcCCCCCceeeccccccccc
Confidence 999999999998865679999999999999999999999999999999999999999999999999998774
No 2
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.97 E-value=7.8e-31 Score=206.62 Aligned_cols=151 Identities=68% Similarity=1.170 Sum_probs=139.1
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccccee
Q 031270 1 MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGS 80 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~G~S 80 (162)
||+.+.+|..+|.||+++|++...+.|+..++..|+|.+|||+++|+.....++|+-+..+.....+....|.....|+|
T Consensus 184 MPl~R~alY~KgieIycAPT~D~r~~w~~sM~~IAlEG~cFvlSA~QF~k~~d~p~~peyl~~~~~~~k~pD~vv~~GGS 263 (337)
T KOG0805|consen 184 MPLYRTALYAKGIEIYCAPTADGRKEWQSSMLHIALEGGCFVLSACQFCKRKDFPDHPDYLFTDWYDDKEPDSVVSQGGS 263 (337)
T ss_pred cHHHHHHHHhcCcEEEeccCCCCcHHHHHhhhheeecCceEEEEhhhhcccccCCCCchhhcccchhccCCCcceecCCc
Confidence 89999999999999999999999999999999999999999999999999888887666666666666677888899999
Q ss_pred EEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecCcCCCceEEcCCCcccc
Q 031270 81 VIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151 (162)
Q Consensus 81 ~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~~~~~~~~~~~~~~~~~ 151 (162)
.|++|.|++|+.+...+|+|++||+|+++|.++|..+|+.|||+|||+|+|.++.+++.++.+...-.|.|
T Consensus 264 viI~PlG~VlagP~~~~EgL~tadldl~dIA~ak~d~DvVGHYsRpDVFqLtVnE~~~~~v~~kt~~~~~~ 334 (337)
T KOG0805|consen 264 VIISPLGQVLAGPNFESEGLITADLDLGDIARAKLDFDVVGHYSRPDVFQLTVNEHPRKPVTFKTKVEKAE 334 (337)
T ss_pred EEEccccceecCCCcCccceEEEeccchhhhhhccccccccccCCCceEEEEeccCCCCceEEeeeeeecc
Confidence 99999999999999899999999999999999999999999999999999999999999998876655544
No 3
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.93 E-value=2.6e-26 Score=180.25 Aligned_cols=111 Identities=29% Similarity=0.450 Sum_probs=101.1
Q ss_pred cHHHHHHHhCCCcEEEEeCCC----ChhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270 2 PLLRTALYGKGIEIYCAPTAD----SRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA 77 (162)
Q Consensus 2 P~~~r~la~~Gaei~v~p~a~----~~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 77 (162)
||..-.|..+||+|+..|+++ +..||+.++||||+|+|||||++.++|... .....+
T Consensus 176 pE~sl~LR~~gA~iLtyPSAFT~~TG~AHWEiLlRARAietQCYVvaaaQ~G~Hn-------------------eKR~Sy 236 (295)
T KOG0807|consen 176 PELSLKLRKMGAQILTYPSAFTIKTGEAHWEILLRARAIETQCYVVAAAQVGKHN-------------------EKRESY 236 (295)
T ss_pred chHHHHHHHcCCcEEeccchhhhcccHHHHHHHHHHHHhhcceEEEehhhccccc-------------------chhhcc
Confidence 889999999999999999998 578999999999999999999999999852 345678
Q ss_pred ceeEEECCCCceeecCCC-CCccEEEEEechHHHHHHHhhCCcCCCCCCccceeee
Q 031270 78 GGSVIISPSGTVLAGPNY-EGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLV 132 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~~-~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~ 132 (162)
|+||||||||.+++..+. ...++++||||++.+...|.++|++.| ||+|+|.+.
T Consensus 237 GhSMiVDPWGtVva~~se~~~~~l~~AdiDlslld~lr~~mP~~~h-Rr~dly~~~ 291 (295)
T KOG0807|consen 237 GHSMIVDPWGTVVARCSERTGPGLILADIDLSLLDSLRTKMPLFNH-RRNDLYTLF 291 (295)
T ss_pred CcceEEcchhhhheecCCCCCCceEEEEccHHHHHHHHHhCchhhh-cccchhhhh
Confidence 999999999999999963 248999999999999999999999999 999999864
No 4
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=99.93 E-value=1.7e-25 Score=183.04 Aligned_cols=130 Identities=49% Similarity=0.792 Sum_probs=107.7
Q ss_pred CcHHHHHHHhCCCcEEEEeCCC------ChhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCc
Q 031270 1 MPLLRTALYGKGIEIYCAPTAD------SRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSV 74 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~------~~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~ 74 (162)
.||++|.++.+||+|+++|++. ...+|..++++||+||+||||+||++|.++.++... .+.+ ....+..
T Consensus 162 fPe~~r~~a~~ga~ii~~~~~~~~~~~~~~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~----~~~~-~~~~~~~ 236 (297)
T cd07564 162 MPLARYALYAQGEQIHVAPWPDFSPYYLSREAWLAASRHYALEGRCFVLSACQVVTEEDIPADC----EDDE-EADPLEV 236 (297)
T ss_pred CHHHHHHHHHCCCeEEEECCCCcccccccHHHHHHHHHHHHHhcCCEEEEcccccChhHccccc----cccc-ccccccc
Confidence 4899999999999999998874 367899999999999999999999999753222110 0000 0112346
Q ss_pred cccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecC
Q 031270 75 VCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRD 135 (162)
Q Consensus 75 ~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~ 135 (162)
.|.|+|+|++|+|+++++++.++|++++++||++.+++.|..++++.|++|||+|.++|++
T Consensus 237 ~~~G~S~iv~P~G~il~~~~~~~e~~l~a~id~~~~~~~r~~~~~~~~~~r~~~~~~~~~~ 297 (297)
T cd07564 237 LGGGGSAIVGPDGEVLAGPLPDEEGILYADIDLDDIVEAKLDFDPVGHYSRPDVFSLTVDR 297 (297)
T ss_pred cCCCceEEECCCCCeecCCCCCCceEEEEEecHHHHHHHHhcCCCCCCCCCchhhceeeCC
Confidence 7899999999999999998768899999999999999999999999998899999999975
No 5
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=99.92 E-value=5.4e-25 Score=185.08 Aligned_cols=127 Identities=22% Similarity=0.270 Sum_probs=102.4
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC 76 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~ 76 (162)
.||++|.|+++|||||++|++|+ ..+|..++++||+||+|||+++|++|.+. ++++.. ++.......+...|
T Consensus 230 fPe~~r~la~~GAdiil~Psa~~~~~~~~~w~~~~rarAieN~~fVv~~NrvG~e~-~~~~~~---~~~g~~~~~~~~~f 305 (363)
T cd07587 230 HPLNWLMYGLNGAEIVFNPSATVGALSEPMWPIEARNAAIANSYFTVGINRVGTEV-FPNEFT---SGDGKPAHKDFGHF 305 (363)
T ss_pred CcHHHHHHHHcCCcEEEECCCcCCCCchHHHHHHHHHHHHhcCcEEEEeccccccc-cccccc---cccccccccccccc
Confidence 59999999999999999999984 36899999999999999999999999752 221100 00000000123468
Q ss_pred cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeee
Q 031270 77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLV 132 (162)
Q Consensus 77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~ 132 (162)
+|+|+|++|+|++++++...+|+++++|||++.+++.|..++++.+ +|||+|...
T Consensus 306 ~G~S~Ii~P~G~il~~~~~~~E~ll~adiDl~~i~~~R~~~~~~~~-~r~~~y~~~ 360 (363)
T cd07587 306 YGSSYVAAPDGSRTPGLSRTRDGLLVAELDLNLCRQVKDKWGFRMT-ARYEMYADF 360 (363)
T ss_pred cceeEEECCCCCCccCCCCCCCcEEEEEecHHHHHHHHhcCCCCcc-CCHHHHHHH
Confidence 9999999999999998865789999999999999999999999998 999999743
No 6
>PLN00202 beta-ureidopropionase
Probab=99.92 E-value=9.1e-25 Score=185.93 Aligned_cols=130 Identities=22% Similarity=0.250 Sum_probs=104.4
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC 76 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~ 76 (162)
.||++|.++++|||||++|++|+ ..+|+.++++||+||+|||++||++|.+. ++.... ++.....+.+...|
T Consensus 251 FPE~~r~la~~GAdiIl~Psa~~~~~~~~~w~~~~raRAiEN~~fvv~aNrvG~~~-~~~~~~---~~~g~~~~~~~~~f 326 (405)
T PLN00202 251 HPLNWLAFGLNGAEIVFNPSATVGDLSEPMWPIEARNAAIANSYFVGSINRVGTEV-FPNPFT---SGDGKPQHKDFGHF 326 (405)
T ss_pred cHHHHHHHHHCCCcEEEECCCCCCccCHHHHHHHHHHHHHhcCCEEEEeccccccc-cccccc---cccccccccccccc
Confidence 48999999999999999999984 36899999999999999999999999742 111100 00000001122468
Q ss_pred cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecC
Q 031270 77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRD 135 (162)
Q Consensus 77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~ 135 (162)
+|+|+|++|+|++++++..++|+++++|||++.+++.|..++++.| +|||+|...+.+
T Consensus 327 ~G~S~Iv~P~G~vla~~~~~~E~llvadIDl~~v~~~R~~~~~~~~-rR~~ly~~~~~~ 384 (405)
T PLN00202 327 YGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQLKDKWGFRMT-ARYEMYADFFAE 384 (405)
T ss_pred cceeEEEcCCCCEeccCCCCCCcEEEEEeCHHHHHHHHHhCCcccc-cCHhHHHHHHHh
Confidence 9999999999999999865689999999999999999999999998 999999865543
No 7
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=99.89 E-value=9.6e-23 Score=163.67 Aligned_cols=107 Identities=20% Similarity=0.255 Sum_probs=94.6
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA 77 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 77 (162)
.||+.|.+ +|++++++|++|+ ..+|+.++++||+||+|||++||++|.+. ++..|.
T Consensus 146 fPe~~r~l--~gad~i~~~s~~~~~~~~~~~~~~~aRA~En~~~vv~~n~~G~~~-------------------~~~~~~ 204 (256)
T PRK10438 146 FPVWSRNR--NDYDLALYVANWPAPRSLHWQTLLTARAIENQAYVAGCNRVGSDG-------------------NGHHYR 204 (256)
T ss_pred CHHHHHhh--cCCCEEEEecCCCCCchHHHHHHHHHHHHhcCcEEEEecccccCC-------------------CCCEEc
Confidence 38999986 8999999999985 46899999999999999999999999751 346799
Q ss_pred ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccce
Q 031270 78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVL 129 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~ 129 (162)
|+|+|+||+|++++++..++|++++++||++.+++.|..++++.| ||+..|
T Consensus 205 G~S~ivdP~G~vl~~~~~~~e~~i~~~idl~~~~~~R~~~~~l~~-r~~~~~ 255 (256)
T PRK10438 205 GDSRIINPQGEIIATAEPHQATRIDAELSLEALQEYREKFPAWRD-ADEFTL 255 (256)
T ss_pred CceEEECCCCcEEEEcCCCCcEEEEEEECHHHHHHHHHhCCcccc-CChhhc
Confidence 999999999999999976789999999999999999999999987 665543
No 8
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=99.89 E-value=1.1e-22 Score=166.39 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=99.9
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA 77 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 77 (162)
.||+.|.++++||||+++|++|+ ..+|..++++||+||+|||++||++|.+ ++..|+
T Consensus 158 fPe~~r~la~~GAdill~ps~~~~~~~~~w~~~~~aRA~En~~~vv~aN~~G~~--------------------~~~~~~ 217 (291)
T cd07565 158 YPEIARECAYKGAELIIRIQGYMYPAKDQWIITNKANAWCNLMYTASVNLAGFD--------------------GVFSYF 217 (291)
T ss_pred CcHHHHHHHHCCCeEEEECCcCCCCcchHHHHHHHHHHHhcCcEEEEecccccC--------------------CCceee
Confidence 48999999999999999999884 4689999999999999999999999975 356789
Q ss_pred ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecCcCC
Q 031270 78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDHPA 138 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~~~~ 138 (162)
|+|+|+||+|++++++..++|+++++|||++.+++.|..+++ |.|+|++.++....
T Consensus 218 G~S~ivdP~G~ila~~~~~~e~i~~adid~~~~~~~R~~~~~-----~~~~~~~~~~~~~~ 273 (291)
T cd07565 218 GESMIVNFDGRTLGEGGREPDEIVTAELSPSLVRDARKNWGS-----ENNLYKLGHRGYVA 273 (291)
T ss_pred eeeEEECCCCCEEEeCCCCCCcEEEEEEcHHHHHHHHhcCCC-----CCcHHHhhhhhhhc
Confidence 999999999999999976778999999999999999999877 33888887766543
No 9
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=99.88 E-value=1.6e-22 Score=163.00 Aligned_cols=113 Identities=29% Similarity=0.377 Sum_probs=99.8
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC----------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCC
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS----------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLT 70 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~----------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~ 70 (162)
.|++.|.++.+||+|+++|++|+ ..+|+.++++||+||++||++||++|.+.. .
T Consensus 155 fpe~~r~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~----------------~ 218 (279)
T TIGR03381 155 FPETARAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVG----------------D 218 (279)
T ss_pred ChHHHHHHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEecccccCC----------------C
Confidence 48999999999999999999862 358999999999999999999999997520 0
Q ss_pred CCCccccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCcccee
Q 031270 71 PDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLS 130 (162)
Q Consensus 71 ~~~~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~ 130 (162)
..+..|.|.|+|++|+|+++++++.++|++++++||++.++..|..++++.+ +||++|+
T Consensus 219 ~~~~~~~G~S~i~~p~G~il~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~-~r~~~y~ 277 (279)
T TIGR03381 219 GGEQTFYGSSFIADHTGELVAEAGRSEEAVLVATFDLDEIAKQRAAWGFFRD-RRPELYG 277 (279)
T ss_pred CCcceEeeeEEEECCCCcEeecCCCCCCceEEEEeCHHHHHHHHhcCchhhh-CChhhcc
Confidence 1346789999999999999999976789999999999999999999999987 8999996
No 10
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.88 E-value=1.5e-22 Score=162.80 Aligned_cols=108 Identities=28% Similarity=0.405 Sum_probs=95.8
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCCh---------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCC
Q 031270 1 MPLLRTALYGKGIEIYCAPTADSR---------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTP 71 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~~---------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~ 71 (162)
.|++.|.++.+|++|+++|++|+. .+|..+.++||+||+||||+||++|.+
T Consensus 149 fpe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~-------------------- 208 (268)
T cd07580 149 FPETFRLLALQGADIVCVPTNWVPMPRPPEGGPPMANILAMAAAHSNGLFIACADRVGTE-------------------- 208 (268)
T ss_pred chHHHHHHHHcCCCEEEEcCcccccCCcccccCcHHHHhhHHHHhhCCcEEEEEeeeeec--------------------
Confidence 388999999999999999999841 468889999999999999999999985
Q ss_pred CCccccceeEEECCCCceeecCCC-CCccEEEEEechHHHHHHHhh--CCcCCCCCCccce
Q 031270 72 DSVVCAGGSVIISPSGTVLAGPNY-EGEALISADLDLGEIAREKFA--FDVVGHYSRPEVL 129 (162)
Q Consensus 72 ~~~~~~G~S~Iv~P~G~~la~~~~-~~E~iv~adiDl~~i~~~R~~--~~~~~~y~Rpd~~ 129 (162)
++..|.|+|+|++|+|++++++.. .+|++++++||++.++..|.. ++++.| +||++|
T Consensus 209 ~~~~~~G~S~ii~p~G~~~~~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~-~r~~~y 268 (268)
T cd07580 209 RGQPFIGQSLIVGPDGWPLAGPASGDEEEILLADIDLTAARRKRIWNSNDVLRD-RRPDLY 268 (268)
T ss_pred cCceEeeeeEEECCCCCeeeecCCCCCCeEEEEEecHHHHHHhhcCCcchhhhh-cCcccC
Confidence 346789999999999999999753 489999999999999999988 488888 899886
No 11
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=99.88 E-value=4e-22 Score=166.72 Aligned_cols=110 Identities=20% Similarity=0.187 Sum_probs=97.7
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA 77 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 77 (162)
.||++|.++++||||+++|++|. .++|..++++||+||+||||+||++|.+ +...|.
T Consensus 171 fPE~~R~la~~GAelii~psa~~~~~~~~~~~~~rarA~eN~~yVv~aN~~G~~--------------------~~~~~~ 230 (345)
T PRK13286 171 YPEIWRDCAMKGAELIVRCQGYMYPAKEQQVLVAKAMAWANNCYVAVANAAGFD--------------------GVYSYF 230 (345)
T ss_pred ChHHHHHHHHcCCeEEEEccccCCCchHHHHHHHHHHHHHCCCEEEEEeccccc--------------------CCceee
Confidence 38999999999999999999884 4689999999999999999999999975 345789
Q ss_pred ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecC
Q 031270 78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRD 135 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~ 135 (162)
|+|+|++|+|++++++..++|++++++||++.++++|..+++.+| +|++..+.
T Consensus 231 G~S~Ivdp~G~vla~~~~~~e~ii~adld~~~i~~~R~~~~~~n~-----~~~~~~~~ 283 (345)
T PRK13286 231 GHSAIIGFDGRTLGECGEEEMGIQYAQLSVSQIRDARRNDQSQNH-----LFKLLHRG 283 (345)
T ss_pred eeEEEECCCCcEEEecCCCCCeEEEEEEeHHHHHHHHHhCCcccc-----hhhhccce
Confidence 999999999999999876778999999999999999999999887 56655443
No 12
>PLN02747 N-carbamolyputrescine amidase
Probab=99.87 E-value=4.7e-22 Score=162.33 Aligned_cols=123 Identities=24% Similarity=0.406 Sum_probs=102.9
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC----------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCC
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS----------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLT 70 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~----------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~ 70 (162)
.|++.|.++.+|++|+++|++|+ ..+|+.++++||+||+|||+++|++|.+. ++.+ ..
T Consensus 161 fpe~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~-~~~~-----------~g 228 (296)
T PLN02747 161 FPEAARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNRIGTEI-LETE-----------HG 228 (296)
T ss_pred chHHHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEEecccccc-cccc-----------cC
Confidence 48999999999999999999962 36799999999999999999999999741 1100 00
Q ss_pred CCCccccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecCc
Q 031270 71 PDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDH 136 (162)
Q Consensus 71 ~~~~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~~ 136 (162)
.....|.|+|+|++|+|++++++...+|+++++|||++.++..|..++++.+ +|||+|...+..+
T Consensus 229 ~~~~~~~G~S~i~~p~G~vl~~~~~~~e~~~~adid~~~~~~~r~~~~~~~~-~r~~~~~~~~~~~ 293 (296)
T PLN02747 229 PSKITFYGGSFIAGPTGEIVAEADDKAEAVLVAEFDLDQIKSKRASWGVFRD-RRPDLYKVLLTLD 293 (296)
T ss_pred CcCceEeeeeEEECCCCCEeecCCCCCCcEEEEEEcHHHHHHHHHhCCchhh-cChhHHHHHHhhc
Confidence 1245789999999999999999976789999999999999999999999876 8999998655443
No 13
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=99.87 E-value=4.8e-22 Score=161.28 Aligned_cols=113 Identities=25% Similarity=0.332 Sum_probs=100.1
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC 76 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~ 76 (162)
.|++.|.++.+|+||+++|++++ ...|..+.++||+||++||+++|++|.+.. .....|
T Consensus 167 fpe~~r~la~~Ga~li~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~-----------------~~~~~~ 229 (287)
T cd07568 167 FPEGWRALGLNGAEIVFNPSATVAGLSEYLWKLEQPAAAVANGYFVGAINRVGTEAP-----------------WNIGEF 229 (287)
T ss_pred CchHHHHHHHCCCeEEEECCcCCCCCchhhhHHHHHHHHHHCCcEEEEeccccccCC-----------------CccceE
Confidence 48999999999999999999984 357988899999999999999999997520 012478
Q ss_pred cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceee
Q 031270 77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSL 131 (162)
Q Consensus 77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~ 131 (162)
.|+|+|++|+|+++++++.++|++++++||++.+++.|..++++.| +||++|..
T Consensus 230 ~G~S~ii~p~G~il~~~~~~~~~~l~a~id~~~~~~~R~~~~~~~~-~r~~~y~~ 283 (287)
T cd07568 230 YGSSYFVDPRGQFVASASRDKDELLVAELDLDLIREVRDTWQFYRD-RRPETYGE 283 (287)
T ss_pred eceeEEECCCceEEEecCCCCCeEEEEEecHHHHHHHHhhCchhhh-cCHHHhHH
Confidence 8999999999999999877789999999999999999999999988 99999974
No 14
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=99.87 E-value=5.5e-22 Score=162.55 Aligned_cols=111 Identities=25% Similarity=0.311 Sum_probs=97.5
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC-------------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS-------------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEE 67 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~-------------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~ 67 (162)
.|++.|.++.+|++|+++|+++. ..+|...+++||+||++||+++|++|.+
T Consensus 176 fpe~~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~---------------- 239 (302)
T cd07569 176 WPETWRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHNLLSMQAGAYQNGTWVVAAAKAGME---------------- 239 (302)
T ss_pred cchHHHHHHHCCCcEEEeecCCcccCCCccccchhhHHHHHHHHhhhhhcccceEEEeeccccC----------------
Confidence 48999999999999999975531 1367888899999999999999999975
Q ss_pred CCCCCCccccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhh-CCcCCCCCCccceeee
Q 031270 68 DLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFA-FDVVGHYSRPEVLSLV 132 (162)
Q Consensus 68 ~~~~~~~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~-~~~~~~y~Rpd~~~~~ 132 (162)
++..|+|+|+|++|+|++++++..++|+++++|||++.+++.|.. .+++.| +|||+|..+
T Consensus 240 ----~~~~~~G~S~ii~p~G~vla~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~~-~r~~~y~~~ 300 (302)
T cd07569 240 ----DGCDLIGGSCIVAPTGEIVAQATTLEDEVIVADCDLDLCREGRETVFNFARH-RRPEHYGLI 300 (302)
T ss_pred ----CCceEecceEEECCCCCEEEecCCCCCcEEEEEecHHHhhhcccccCcchhh-cCHHHHhhh
Confidence 356789999999999999999976679999999999999999994 899998 899999744
No 15
>PLN02798 nitrilase
Probab=99.86 E-value=1.9e-21 Score=158.21 Aligned_cols=110 Identities=25% Similarity=0.383 Sum_probs=98.5
Q ss_pred CcHHHHHHH-hCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcc
Q 031270 1 MPLLRTALY-GKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVV 75 (162)
Q Consensus 1 ~P~~~r~la-~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~ 75 (162)
.|+++|.++ ++|++|+++|++++ ..+|+.++++||+||++||+++|++|.+. .+..
T Consensus 168 fpe~~r~~a~~~Gadlil~ps~~~~~~~~~~~~~~~~~rAien~~~vv~an~~G~~~-------------------~~~~ 228 (286)
T PLN02798 168 FPELYQQLRFEHGAQVLLVPSAFTKPTGEAHWEVLLRARAIETQCYVIAAAQAGKHN-------------------EKRE 228 (286)
T ss_pred ChHHHHHHHHhCCCcEEEECCcCCCCCcHHHHHHHHHHHHHHhCCEEEEecccCcCC-------------------CCce
Confidence 489999999 99999999999875 35899999999999999999999999741 2467
Q ss_pred ccceeEEECCCCceeecCCC-CCccEEEEEechHHHHHHHhhCCcCCCCCCcccee
Q 031270 76 CAGGSVIISPSGTVLAGPNY-EGEALISADLDLGEIAREKFAFDVVGHYSRPEVLS 130 (162)
Q Consensus 76 ~~G~S~Iv~P~G~~la~~~~-~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~ 130 (162)
|+|+|+|++|+|++++++.. ++|++++++||++.++..|..++++.| +|||.|.
T Consensus 229 ~~G~S~ii~p~G~il~~~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~-~~~~~~~ 283 (286)
T PLN02798 229 SYGHALIIDPWGTVVARLPDRLSTGIAVADIDLSLLDSVRTKMPIAEH-RRSLEFW 283 (286)
T ss_pred eeeeeEEECCCccchhhcCCCCCCCEEEEEecHHHHHHHHHhCcchhc-cchhhhh
Confidence 88999999999999998863 578999999999999999999999999 6999886
No 16
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.86 E-value=2.3e-21 Score=155.13 Aligned_cols=112 Identities=27% Similarity=0.343 Sum_probs=97.1
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccccee
Q 031270 1 MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGS 80 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~G~S 80 (162)
.|++.|.++.+|++|+++|++|...+|...+++||+||++||++||++|.+. . ...+..|.|+|
T Consensus 146 fpe~~r~~~~~Gadli~~ps~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~-~---------------~~~~~~~~G~S 209 (259)
T cd07577 146 FPEAARTLALKGADIIAHPANLVLPYCPKAMPIRALENRVFTITANRIGTEE-R---------------GGETLRFIGKS 209 (259)
T ss_pred cchHHHHHHHcCCCEEEECCccCCchhhhhhhHhhhhcCceEEEEecCcccC-C---------------CCCCceEeeee
Confidence 4899999999999999999999877898889999999999999999999751 0 01346788999
Q ss_pred EEECCCCceeecCCCCCccEEEEEechHHHHHHH--hhCCcCCCCCCccce
Q 031270 81 VIISPSGTVLAGPNYEGEALISADLDLGEIAREK--FAFDVVGHYSRPEVL 129 (162)
Q Consensus 81 ~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R--~~~~~~~~y~Rpd~~ 129 (162)
+|++|+|++++++..++|++++++||++.++..| ..++++.+ +||++|
T Consensus 210 ~i~~p~G~i~~~~~~~~e~~~~~~id~~~~~~~~~~~~~~~~~~-~r~~~~ 259 (259)
T cd07577 210 QITSPKGEVLARAPEDGEEVLVAEIDPRLARDKRINEENDIFKD-RRPEFY 259 (259)
T ss_pred EEECCCCCEEeecCCCCCcEEEEEEchHHhhcccccccCchhhh-cCcccC
Confidence 9999999999998767899999999999988755 67888887 788876
No 17
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.85 E-value=1.3e-21 Score=159.06 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=83.3
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCCh-----------------------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCC
Q 031270 1 MPLLRTALYGKGIEIYCAPTADSR-----------------------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPP 57 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~~-----------------------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~ 57 (162)
.||+.|.++++||+|+++|++|+. .+|+ ++++||+||+||||+||++|.+
T Consensus 141 fPe~~r~~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~aRA~EN~~~vv~aN~~g~~------ 213 (279)
T cd07579 141 FPEAGRVLALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWH-LARVRAGENNVYFAFANVPDPA------ 213 (279)
T ss_pred CcHHHHHHHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHH-HhHhHHhhCCeEEEEeeccCCc------
Confidence 489999999999999999998632 4888 5899999999999999999863
Q ss_pred CCccccCcccCCCCCCccccceeEEECCCCceeec----CCCCCccEEEEEechHHHHHHHhhCCcCCCCCCcccee
Q 031270 58 PEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAG----PNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLS 130 (162)
Q Consensus 58 ~~~~~~~~e~~~~~~~~~~~G~S~Iv~P~G~~la~----~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~ 130 (162)
..+.|+|+|+||+|.++.. + ..+|+++++|||++.+.+ ..+++.+ ||||+|+
T Consensus 214 ----------------~~~~G~S~ii~P~G~v~~~~~~~~-~~~e~~l~a~id~~~~~~---~~~~~~~-rr~~~~~ 269 (279)
T cd07579 214 ----------------RGYTGWSGVFGPDTFAFPRQEAAI-GDEEGIAWALIDTSNLDS---RYPTNVV-RRKDLVR 269 (279)
T ss_pred ----------------cccccccEEECCCeEEcchhhccc-CCCCcEEEEEecchhhcc---cCCchhh-hhHHHHH
Confidence 2368999999999999843 4 367889999999999887 3555555 5555554
No 18
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=99.85 E-value=5e-21 Score=154.82 Aligned_cols=114 Identities=28% Similarity=0.415 Sum_probs=100.0
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC------------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccC
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS------------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEED 68 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~------------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~ 68 (162)
.|++.|.++.+|++|+++|++++ ..+|..+.++||+||++|||.||++|.+..
T Consensus 156 fpe~~r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~--------------- 220 (284)
T cd07573 156 FPEAARLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEGD--------------- 220 (284)
T ss_pred chHHHHHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEEeccccccCC---------------
Confidence 48999999999999999999862 257888999999999999999999997410
Q ss_pred CCCCCccccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceee
Q 031270 69 LTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSL 131 (162)
Q Consensus 69 ~~~~~~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~ 131 (162)
...+..|.|+|+|++|+|+++++.+.++|++++++||++.++..|..++++.| +|+++|..
T Consensus 221 -~~~~~~~~G~S~i~~p~G~i~~~~~~~~~~v~~a~id~~~~~~~r~~~~~~~~-~~~~~~~~ 281 (284)
T cd07573 221 -PGSGITFYGSSFIADPFGEILAQASRDEEEILVAEFDLDEIEEVRRAWPFFRD-RRPDLYGA 281 (284)
T ss_pred -CCCCceeeceeEEECCCCCeeeccCCCCCcEEEEEecHHHHHHHHhhChhhhh-cChhhhhh
Confidence 01256889999999999999999877789999999999999999999999988 89999974
No 19
>PRK13287 amiF formamidase; Provisional
Probab=99.85 E-value=7.1e-21 Score=158.50 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=98.0
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA 77 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 77 (162)
.|++.|.++.+||+|+++|++++ .+.|....++||+||+|||+++|++|.+ ....++
T Consensus 170 fPe~~R~~a~~GAeill~~s~~~~~~~~~w~~~~~arA~en~~~vv~an~~G~~--------------------~~~~~~ 229 (333)
T PRK13287 170 FPEMAREAAYKGANVMIRISGYSTQVREQWILTNRSNAWQNLMYTASVNLAGYD--------------------GVFYYF 229 (333)
T ss_pred chHHHHHHHHCCCeEEEECCccCCcchhHHHHHHHHHHHhCCcEEEEEeccccC--------------------CCeeee
Confidence 38999999999999999999874 5789999999999999999999999975 346788
Q ss_pred ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecCc
Q 031270 78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDH 136 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~~ 136 (162)
|+|+|+||+|++++++..+++++++++||++.++++|..+++-+ ++|+|..++.
T Consensus 230 G~S~Iidp~G~vl~~~~~~~~~ii~aeid~~~~~~~R~~~~~~n-----~~~~~~~~~~ 283 (333)
T PRK13287 230 GEGQVCNFDGTTLVQGHRNPWEIVTAEVRPDLADEARLGWGLEN-----NIYNLGHRGY 283 (333)
T ss_pred eeeEEECCCCcEEEeCCCCCCeEEEEEEeHHHHHHHHHhcCccc-----cchhhcccce
Confidence 99999999999999998777899999999999999999998744 4777766554
No 20
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=99.85 E-value=8.3e-21 Score=151.02 Aligned_cols=105 Identities=34% Similarity=0.368 Sum_probs=93.6
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA 77 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 77 (162)
.|++.|.++++|+||+++|+++. ...|..++++||+||++|+++||++|.+ ++..|.
T Consensus 147 fpe~~~~~~~~gadii~~p~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~--------------------~~~~~~ 206 (254)
T cd07576 147 FPELVRALALAGADLVLVPTALMEPYGFVARTLVPARAFENQIFVAYANRCGAE--------------------DGLTYV 206 (254)
T ss_pred CCHHHHHHHHCCCCEEEECCccCCCcchhhhhhhHHHHHhCCCEEEEEcccCCC--------------------CCceee
Confidence 48999999999999999998764 3567888999999999999999999975 345689
Q ss_pred ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCcc
Q 031270 78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPE 127 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd 127 (162)
|+|+|++|+|+++++...+ |++++++||++.++..|..++++.| +|+|
T Consensus 207 G~S~i~~p~G~il~~~~~~-e~~~~~~id~~~~~~~R~~~~~~~~-~~~~ 254 (254)
T cd07576 207 GLSSIAGPDGTVLARAGRG-EALLVADLDPAALAAARRENPYLAD-RRPE 254 (254)
T ss_pred eeeEEECCCCCEeEecCCC-CeEEEEEcCHHHHHhhhhcCchhhh-cCCC
Confidence 9999999999999998755 8999999999999999999999887 7775
No 21
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.84 E-value=1.1e-20 Score=151.69 Aligned_cols=109 Identities=26% Similarity=0.400 Sum_probs=97.8
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC----------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCC
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS----------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLT 70 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~----------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~ 70 (162)
.|++.+.++.+|++|+++|++++ ..+|..+.++||+||++|||+||++|.+
T Consensus 148 fp~~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~------------------- 208 (269)
T cd07586 148 HPSLPYLLALDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGVE------------------- 208 (269)
T ss_pred CcHHHHHHHHCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecCc-------------------
Confidence 48899999999999999999863 1468999999999999999999999975
Q ss_pred CCCccccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCcccee
Q 031270 71 PDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLS 130 (162)
Q Consensus 71 ~~~~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~ 130 (162)
++..|+|+|+|++|+|+++++...+++++++++||++.+++.|..++++.+ +|+++|.
T Consensus 209 -~~~~~~G~S~ii~p~G~il~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~-~~~~~~~ 266 (269)
T cd07586 209 -DGVYFWGGSRVVDPDGEVVAEAPLFEEDLLVAELDRSAIRRARFFSPTFRD-EDIRLVL 266 (269)
T ss_pred -CCceEeCCcEEECCCCCEEEecCCccccEEEEEecHHHHHHHHhhCccccc-cChhhhh
Confidence 356788999999999999999876788999999999999999999999987 7898875
No 22
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.84 E-value=2.2e-20 Score=149.46 Aligned_cols=108 Identities=32% Similarity=0.476 Sum_probs=96.3
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC-------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCC
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS-------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDS 73 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~-------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~ 73 (162)
.|++.|.++.+|+||+++|+++. .+.|...+++||+||++||+++|++|.. ++
T Consensus 145 ~pe~~r~l~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~g~~--------------------~~ 204 (261)
T cd07585 145 FPENVRATALLGAEILFAPHATPGTTSPKGREWWMRWLPARAYDNGVFVAACNGVGRD--------------------GG 204 (261)
T ss_pred CcHHHHHHHHCCCCEEEECCccCCCCCcchHHHHHHHhHHHHhhcCeEEEEecccccC--------------------CC
Confidence 48999999999999999998763 3568888999999999999999999974 24
Q ss_pred ccccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhh--CCcCCCCCCccce
Q 031270 74 VVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFA--FDVVGHYSRPEVL 129 (162)
Q Consensus 74 ~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~--~~~~~~y~Rpd~~ 129 (162)
..|.|.|+|++|+|++++++..++|++++++||++.++..|.. .+++.| ||+++|
T Consensus 205 ~~~~G~S~i~~p~G~v~~~~~~~~e~~l~~~id~~~~~~~r~~~~~~~~~~-~~~~~~ 261 (261)
T cd07585 205 EVFPGGAMILDPYGRVLAETTSGGDGMVVADLDLDLINTVRGRRWISFLRA-RRPELY 261 (261)
T ss_pred ceecceEEEECCCCCEEeccCCCCCcEEEEEecHHHHHHhhccccCccccc-cCccCC
Confidence 5788999999999999999987889999999999999999975 688988 888876
No 23
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=99.84 E-value=2.5e-20 Score=150.37 Aligned_cols=111 Identities=31% Similarity=0.400 Sum_probs=96.9
Q ss_pred CcHHHHHH-HhCCCcEEEEeCCCC---h-hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcc
Q 031270 1 MPLLRTAL-YGKGIEIYCAPTADS---R-DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVV 75 (162)
Q Consensus 1 ~P~~~r~l-a~~Gaei~v~p~a~~---~-~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~ 75 (162)
.||+.+.+ +.+|++++++|++|. . .+|..++++||+||+|||+++|++|.++ ....
T Consensus 154 fPe~~~~~~a~~Gaeii~~p~a~~~~~~~~~w~~l~~arA~en~~~vv~~n~~g~~~-------------------~~~~ 214 (274)
T COG0388 154 FPELARRLLALGGAELLLVPAAWPAERGLDHWEVLLRARAIENQVYVLAANRAGFDG-------------------AGLE 214 (274)
T ss_pred CHHHHHHHHHhcCCeEEEEcCCCCCcccHHHHHHHHHHHhhhcCceEEEecccCCCC-------------------CccE
Confidence 48866666 899999999999984 3 7999999999999999999999999862 1378
Q ss_pred ccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCcccee
Q 031270 76 CAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLS 130 (162)
Q Consensus 76 ~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~ 130 (162)
|+|+|+|++|+|++++++..++|+++++|+|++.+...|..++.+.+.+|.+.+.
T Consensus 215 ~~G~S~i~~p~G~v~~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~~ 269 (274)
T COG0388 215 FCGHSAIIDPDGEVLAEAGEEEEGVLLADIDLAELAEVRRKIPVLKDRRRFDLDV 269 (274)
T ss_pred EecceEEECCCccEEeecCCCCCcEEEEEECHHHHHHHHhhCcchhhcccchhhh
Confidence 9999999999999999997558999999999999999999999888766666554
No 24
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.83 E-value=3.7e-20 Score=147.87 Aligned_cols=102 Identities=30% Similarity=0.478 Sum_probs=93.7
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA 77 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 77 (162)
.|++.|.++.+|++|+++|++|+ ...|....++||+||++||+++|++|.+ ++..+.
T Consensus 151 fpe~~r~~~~~gadll~~ps~~~~~~~~~~~~~~~~rA~En~~~vv~~n~~g~~--------------------~~~~~~ 210 (258)
T cd07584 151 FPEVARILTLKGAEVIFCPSAWREQDADIWDINLPARALENTVFVAAVNRVGNE--------------------GDLVLF 210 (258)
T ss_pred ChHHHHHHHHCCCcEEEECCccCCCCchHHHHHHHHHHHhCCcEEEEECccccC--------------------CCceec
Confidence 48999999999999999999985 4689989999999999999999999975 345788
Q ss_pred ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCC
Q 031270 78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGH 122 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~ 122 (162)
|+|+|++|+|+++++++.+++++++++||++.++..|..++++.+
T Consensus 211 G~S~ii~p~G~il~~~~~~~~~~~~~~id~~~~~~~r~~~p~~~~ 255 (258)
T cd07584 211 GKSKILNPRGQVLAEASEEAEEILYAEIDLDAIADYRMTLPYLKD 255 (258)
T ss_pred ceeEEECCCCceeeecCCCCCcEEEEEeCHHHHHHHHhhCchhhh
Confidence 999999999999999977789999999999999999999999988
No 25
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.83 E-value=4.1e-20 Score=149.38 Aligned_cols=111 Identities=23% Similarity=0.295 Sum_probs=92.4
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC 76 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~ 76 (162)
.|+++|.++.+|++|+++|++++ ..+|...+++||+||+|||+++|++|.+... ..+..+
T Consensus 158 fpe~~r~l~~~ga~ii~~ps~~~~~~~~~~~~~~~~arA~en~~~vv~an~~G~~~~~----------------~~~~~~ 221 (280)
T cd07574 158 FPELARALAEAGADLLLVPSCTDTRAGYWRVRIGAQARALENQCYVVQSGTVGNAPWS----------------PAVDVN 221 (280)
T ss_pred cHHHHHHHHHcCCCEEEECCcCCccccHHHHHHHHHHHHHhhCceEEEeCCCCCCCCc----------------cccccc
Confidence 48999999999999999999874 2356667899999999999999999975200 024578
Q ss_pred cceeEEECCC------CceeecCCCCCccEEEEEechHHHHHHHhhCCc--CCCCCCccc
Q 031270 77 AGGSVIISPS------GTVLAGPNYEGEALISADLDLGEIAREKFAFDV--VGHYSRPEV 128 (162)
Q Consensus 77 ~G~S~Iv~P~------G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~--~~~y~Rpd~ 128 (162)
+|+|+|++|+ |.+++++..++|++++++||++.+++.|..+++ +.+ +|||+
T Consensus 222 ~G~S~i~~P~~~~~~~g~~l~~~~~~~e~~~~a~iD~~~~~~~R~~~~~~~~~~-~~~~~ 280 (280)
T cd07574 222 YGQAAVYTPCDFGFPEDGILAEGEPNTEGWLIADLDLEALRRLREEGSVRNLRD-WREDL 280 (280)
T ss_pred cccceeecCCCCCCCCCCeEeecCCCCCceEEEecCHHHHHHHhhcCCccCccc-CcccC
Confidence 8999999996 889999876779999999999999999999765 555 78874
No 26
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.82 E-value=6.9e-20 Score=145.91 Aligned_cols=103 Identities=28% Similarity=0.419 Sum_probs=93.2
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA 77 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 77 (162)
.|++.|.++.+|+|++++|++|+ ..+|+.+.++||+||++||+.+|++|.+ .+..|.
T Consensus 148 ~pe~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~--------------------~~~~~~ 207 (253)
T cd07583 148 FPELFRKLALEGAEILFVPAEWPAARIEHWRTLLRARAIENQAFVVACNRVGTD--------------------GGNEFG 207 (253)
T ss_pred cHHHHHHHHHcCCcEEEECCCCCCCchHHHHHHHHHHHHHhCCEEEEEcCcccC--------------------CCceec
Confidence 38899999999999999999984 4689999999999999999999999985 355788
Q ss_pred ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCC
Q 031270 78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSR 125 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~R 125 (162)
|.|+|++|+|+++++.+. +++++++|||++.+++.|..++++.+ ||
T Consensus 208 G~S~ii~p~G~il~~~~~-~~~~~~~~i~l~~~~~~r~~~~~~~~-~~ 253 (253)
T cd07583 208 GHSMVIDPWGEVLAEAGE-EEEILTAEIDLEEVAEVRKKIPVFKD-RR 253 (253)
T ss_pred ceeEEECCCchhheecCC-CceEEEEEecHHHHHHHHHhCCchhh-cC
Confidence 999999999999999864 88999999999999999999999887 54
No 27
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.82 E-value=9.4e-20 Score=148.81 Aligned_cols=105 Identities=25% Similarity=0.344 Sum_probs=90.5
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC 76 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~ 76 (162)
.|++.|.++++|++|+++|++|+ ..+|..++++||+||++||+++|++|.+.. ......|
T Consensus 178 fpe~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~arA~en~~~vv~aN~~G~~~~----------------~~~~~~~ 241 (294)
T cd07582 178 YPEVARGLAMNGAEVLLRSSSEVPSVELDPWEIANRARALENLAYVVSANSGGIYGS----------------PYPADSF 241 (294)
T ss_pred ChHHHHHHHHCCCcEEEEcCCCCCCcchhhHHHHHHHHHHhcCCEEEEecccccCcc----------------cccCcee
Confidence 48999999999999999999873 367988999999999999999999987410 0013578
Q ss_pred cceeEEECCCCceeecCCCC-CccEEEEEechHHHHHHHhhCCcCC
Q 031270 77 AGGSVIISPSGTVLAGPNYE-GEALISADLDLGEIAREKFAFDVVG 121 (162)
Q Consensus 77 ~G~S~Iv~P~G~~la~~~~~-~E~iv~adiDl~~i~~~R~~~~~~~ 121 (162)
.|+|+|++|+|++++++... +|++++++||++.+++.|..+++-+
T Consensus 242 ~G~S~ivdp~G~vla~~~~~~~e~il~~~id~~~~~~~R~~~~~~~ 287 (294)
T cd07582 242 GGGSMIVDYKGRVLAEAGYGPGSMVAGAEIDIEALRRARARPGMHN 287 (294)
T ss_pred cceeEEECCCCCEEEeCCCCCCCeEEEEEEcHHHHHHHHHhcCccc
Confidence 89999999999999999766 7899999999999999999887754
No 28
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=99.81 E-value=2.3e-19 Score=143.48 Aligned_cols=102 Identities=28% Similarity=0.456 Sum_probs=91.6
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC 76 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~ 76 (162)
.|++.|.++.+|+||+++|++++ ..+|..++++||+||++||+.+|++|.+. .+..|
T Consensus 158 ~pe~~r~~~~~gadli~~p~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~G~~~-------------------~~~~~ 218 (265)
T cd07572 158 FPELARALARQGADILTVPAAFTMTTGPAHWELLLRARAIENQCYVVAAAQAGDHE-------------------AGRET 218 (265)
T ss_pred cHHHHHHHHHCCCCEEEECCCCCCCcchHHHHHHHHHHHHhcCCEEEEEcccccCC-------------------CCCee
Confidence 48999999999999999999874 45798899999999999999999999752 34678
Q ss_pred cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCC
Q 031270 77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGH 122 (162)
Q Consensus 77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~ 122 (162)
.|.|+|++|+|+++++++.+ |++++++||++.+++.|..++++.|
T Consensus 219 ~G~S~i~~p~G~il~~~~~~-~~~~~~~id~~~~~~~r~~~~~~~~ 263 (265)
T cd07572 219 YGHSMIVDPWGEVLAEAGEG-EGVVVAEIDLDRLEEVRRQIPVLKH 263 (265)
T ss_pred cceeEEECCCcHHHhhcCCC-CcEEEEEeCHHHHHHHHHhCcchhh
Confidence 99999999999999998755 8999999999999999999998876
No 29
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=99.79 E-value=2e-19 Score=147.86 Aligned_cols=90 Identities=21% Similarity=0.091 Sum_probs=78.6
Q ss_pred CcHHHHHHHhC-CCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcc
Q 031270 1 MPLLRTALYGK-GIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVV 75 (162)
Q Consensus 1 ~P~~~r~la~~-Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~ 75 (162)
.||+.|.++.+ |++|+++|++|. ..+|..++++||+||||||++||++|.. .
T Consensus 185 FPE~~r~la~~~GAdlil~paaw~~~~~~~~w~~l~~arA~eN~~~vi~~N~~g~~-----------------------~ 241 (299)
T cd07567 185 FKEPALELVKKLGVDDIVFPTAWFSELPFLTAVQIQQAWAYANGVNLLAANYNNPS-----------------------A 241 (299)
T ss_pred chHHHHHHHHhCCCCEEEECCccCCCCCchhHHHHHHHHHHHcCceEEEecCCCCc-----------------------C
Confidence 48999999999 999999999984 3489999999999999999999999862 2
Q ss_pred ccceeEEECCC-CceeecCCC-CCccEEEEEechHHHHHH
Q 031270 76 CAGGSVIISPS-GTVLAGPNY-EGEALISADLDLGEIARE 113 (162)
Q Consensus 76 ~~G~S~Iv~P~-G~~la~~~~-~~E~iv~adiDl~~i~~~ 113 (162)
++|+|+|++|+ |++++++.. .+|+++++|||++..++.
T Consensus 242 ~~G~S~iv~P~~G~v~a~~~~~~~e~~l~~~id~~~~~~~ 281 (299)
T cd07567 242 GMTGSGIYAGRSGALVYHYDNEPGGKLLVAEVPKLPSRRP 281 (299)
T ss_pred ccccceEEcCCCCcEEEEecCCCCceEEEEEccCCccccc
Confidence 57999999999 999999853 468899999998877543
No 30
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.79 E-value=4.6e-19 Score=141.90 Aligned_cols=101 Identities=27% Similarity=0.472 Sum_probs=87.7
Q ss_pred cHHHHHHHhCCCcEEEEeCCCCh-----hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270 2 PLLRTALYGKGIEIYCAPTADSR-----DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC 76 (162)
Q Consensus 2 P~~~r~la~~Gaei~v~p~a~~~-----~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~ 76 (162)
|++.|.++.+|++|+++|++|.. .+| .+||+||+||||.+|++|.+ ++..|
T Consensus 152 pe~~r~~~~~ga~ll~~ps~~~~~~~~~~~~----~~rA~en~~~vv~an~~G~~--------------------~~~~~ 207 (258)
T cd07578 152 FETARLLALGGADVICHISNWLAERTPAPYW----INRAFENGCYLIESNRWGLE--------------------RGVQF 207 (258)
T ss_pred hHHHHHHHHcCCCEEEEcCCCCCCCCcchHH----HHhhhcCCeEEEEecceecc--------------------CCcce
Confidence 88999999999999999999852 234 58999999999999999975 34678
Q ss_pred cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhh-CCcCCCCCCccc
Q 031270 77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFA-FDVVGHYSRPEV 128 (162)
Q Consensus 77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~-~~~~~~y~Rpd~ 128 (162)
.|+|+|++|+|++++... .+|+++++|||++.++..|.. ++++.+ |||++
T Consensus 208 ~G~S~ii~p~G~il~~~~-~~e~~~~a~id~~~~~~~r~~~~~~~~~-~~~~~ 258 (258)
T cd07578 208 SGGSCIIEPDGTIQASID-SGDGVALGEIDLDRARHRQFPGELVFTA-RRPEL 258 (258)
T ss_pred eeEEEEECCCCcEeeccC-CCCceEEEEecchHhhhhhcccchhhhh-hccCC
Confidence 999999999999999875 678999999999999999975 788887 88863
No 31
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=99.77 E-value=2.4e-18 Score=137.37 Aligned_cols=100 Identities=19% Similarity=0.341 Sum_probs=88.7
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA 77 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 77 (162)
.|++.|.++. ++++++|++|+ ..+|....++||+||++||++||++|.+. .+..|.
T Consensus 145 ~pe~~r~~~~--a~lil~~s~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~~-------------------~~~~~~ 203 (252)
T cd07575 145 FPVWSRNTND--YDLLLYVANWPAPRRAAWDTLLKARAIENQAYVIGVNRVGTDG-------------------NGLEYS 203 (252)
T ss_pred ChHHHHhhcC--CCEEEEeCCCCCCchHHHHHHhHHHHhhccceEEEecccccCC-------------------CCceEc
Confidence 3888888765 99999999884 46899999999999999999999999752 246788
Q ss_pred ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCC
Q 031270 78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGH 122 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~ 122 (162)
|+|+|++|+|+++++...+ |+++++|||++.++..|..++++.+
T Consensus 204 G~S~i~~p~G~~l~~~~~~-e~~i~~~id~~~~~~~r~~~~~~~~ 247 (252)
T cd07575 204 GDSAVIDPLGEPLAEAEED-EGVLTATLDKEALQEFREKFPFLKD 247 (252)
T ss_pred ceeEEECCCCceeeEcCCC-ceEEEEEECHHHHHHHHhhCCcccc
Confidence 9999999999999998755 9999999999999999999999887
No 32
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.77 E-value=3.5e-18 Score=136.10 Aligned_cols=99 Identities=30% Similarity=0.436 Sum_probs=89.5
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC-----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS-----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVV 75 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~-----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~ 75 (162)
.|+..|.++.+|++|+++|++|. .++|..++++||+||++||+.||++|. .
T Consensus 152 ~pe~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~------------------------~ 207 (255)
T cd07581 152 FPELARALALAGADVIVVPAAWVAGPGKEEHWETLLRARALENTVYVAAAGQAGP------------------------R 207 (255)
T ss_pred CHHHHHHHHHCCCcEEEECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEcCcCC------------------------C
Confidence 48999999999999999999883 368889999999999999999999985 3
Q ss_pred ccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCC
Q 031270 76 CAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSR 125 (162)
Q Consensus 76 ~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~R 125 (162)
|.|.|+|++|+|++++++. .+|++++++||++.+++.|..++++.+ ||
T Consensus 208 ~~G~S~i~~p~G~i~~~~~-~~~~~l~~~id~~~~~~~r~~~~~~~~-~~ 255 (255)
T cd07581 208 GIGRSMVVDPLGVVLADLG-EREGLLVADIDPERVEEAREALPVLEN-RR 255 (255)
T ss_pred cccceEEECCCcceeeecC-CCCcEEEEEeCHHHHHHHHHhCcchhc-CC
Confidence 6799999999999999986 469999999999999999999999876 54
No 33
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=99.73 E-value=7.2e-18 Score=134.86 Aligned_cols=99 Identities=22% Similarity=0.204 Sum_probs=85.4
Q ss_pred cHH-HHHHHhCCCcEEEEeCCCC-----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcc
Q 031270 2 PLL-RTALYGKGIEIYCAPTADS-----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVV 75 (162)
Q Consensus 2 P~~-~r~la~~Gaei~v~p~a~~-----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~ 75 (162)
|++ .|.++++|++|+++|++++ ...|..++++||+||++|||++|++|.. ++..
T Consensus 151 pe~~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~--------------------~~~~ 210 (261)
T cd07570 151 PDPPSAELALAGADLILNLSASPFHLGKQDYRRELVSSRSARTGLPYVYVNQVGGQ--------------------DDLV 210 (261)
T ss_pred CCchHHHHHHcCCcEEEEeCCCccccCcHHHHHHHHHHHHHHhCCcEEEEeCCCCC--------------------ceEE
Confidence 777 9999999999999999874 2457788999999999999999998874 3567
Q ss_pred ccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCC
Q 031270 76 CAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGH 122 (162)
Q Consensus 76 ~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~ 122 (162)
|.|+|+|++|+|+++++++.+ +.+++++|++.++..|..++...+
T Consensus 211 ~~G~S~ii~p~G~vl~~~~~~--~~~~~~id~~~~~~~r~~~~~~~~ 255 (261)
T cd07570 211 FDGGSFIADNDGELLAEAPRF--EEDLADVDLDRLRSERRRNSSFLD 255 (261)
T ss_pred EECceEEEcCCCCEEEecCcc--eEEEEEEEEecCcccccccCCCcc
Confidence 899999999999999998633 689999999999999988766543
No 34
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=99.69 E-value=2.7e-16 Score=124.33 Aligned_cols=97 Identities=34% Similarity=0.570 Sum_probs=87.9
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA 77 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 77 (162)
+|+..+.++.+|++++++|+++. ..+|..++++||+||++|++.||.+|.. ++..|.
T Consensus 148 ~~~~~~~~~~~g~dli~~ps~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~--------------------~~~~~~ 207 (253)
T cd07197 148 FPELARELALKGADIILVPAAWPTARREHWELLLRARAIENGVYVVAANRVGEE--------------------GGLEFA 207 (253)
T ss_pred CcHHHHHHHHCCCcEEEECCcCCCcchHHHHHHHHHHHHHhCCeEEEecCCCCC--------------------CCcccc
Confidence 58889999999999999999986 3588899999999999999999999975 356789
Q ss_pred ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCC
Q 031270 78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFD 118 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~ 118 (162)
|.|+|++|+|++++....+ +++++++||++.+++.|..+.
T Consensus 208 G~S~i~~p~G~~~~~~~~~-~~~~~~~id~~~~~~~r~~~~ 247 (253)
T cd07197 208 GGSMIVDPDGEVLAEASEE-EGILVAELDLDELREARKRWS 247 (253)
T ss_pred ceeEEECCCCceeeecCCC-CcEEEEEeCHHHHHHHHhhCC
Confidence 9999999999999998766 999999999999999998763
No 35
>PRK13981 NAD synthetase; Provisional
Probab=99.60 E-value=3.6e-15 Score=131.22 Aligned_cols=89 Identities=26% Similarity=0.320 Sum_probs=79.3
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC-----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS-----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVV 75 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~-----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~ 75 (162)
.|++.|.++.+|++|+++|++++ ...|..++++||+||+||||+||++|.+ +...
T Consensus 150 ~pe~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~~~rA~En~~~vv~aN~vG~~--------------------~~~~ 209 (540)
T PRK13981 150 NPEPAETLAEAGAELLLVPNASPYHRGKPDLREAVLRARVRETGLPLVYLNQVGGQ--------------------DELV 209 (540)
T ss_pred CCcHHHHHHHCCCcEEEEcCCCcccCCcHHHHHHHHHHHHHHhCCeEEEEecccCC--------------------CceE
Confidence 48899999999999999999874 2456788999999999999999999975 3568
Q ss_pred ccceeEEECCCCceeecCCCCCccEEEEEechHH
Q 031270 76 CAGGSVIISPSGTVLAGPNYEGEALISADLDLGE 109 (162)
Q Consensus 76 ~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~ 109 (162)
|.|+|+|++|+|++++++..++|+++++|+|++.
T Consensus 210 f~G~S~i~dp~G~il~~~~~~~e~~l~~did~~~ 243 (540)
T PRK13981 210 FDGASFVLNADGELAARLPAFEEQIAVVDFDRGE 243 (540)
T ss_pred EeCceEEECCCCCEeeecCCCCCcEEEEEEeecC
Confidence 9999999999999999998788999999999863
No 36
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.57 E-value=2.5e-15 Score=122.24 Aligned_cols=112 Identities=25% Similarity=0.266 Sum_probs=99.9
Q ss_pred cHHHHHHHhCCCcEEEEeCCCC-------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCc
Q 031270 2 PLLRTALYGKGIEIYCAPTADS-------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSV 74 (162)
Q Consensus 2 P~~~r~la~~Gaei~v~p~a~~-------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~ 74 (162)
|+.++.++.+|++++|.|++|. ..+|..++++||..|+++|+.+|..++.. ..+
T Consensus 177 ~d~A~~~~~~g~~~ivyPtaw~~~~l~~~~~hw~~~~~~~a~~n~~~v~~~s~~~~~s-------------------~~y 237 (298)
T KOG0806|consen 177 YDPAMILVKDGADLIVYPTAWNNELLSAVPLHWALLMRARANDNAANVHAPSPARTGS-------------------GIY 237 (298)
T ss_pred cchHHHHHHcCCcEEEecchHhhhcccccchHHHHHHhCCcccceeeeeccCcCcCCc-------------------eee
Confidence 6889999999999999999995 47899999999999999999999998751 345
Q ss_pred cccc-eeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeec
Q 031270 75 VCAG-GSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVR 134 (162)
Q Consensus 75 ~~~G-~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~ 134 (162)
..+| +|.+++|+|++|+.+. ++++++++++|++.+.+.|+.+++..+ +|+|+|.+.+.
T Consensus 238 ~~~gshs~~~~p~gkvl~a~~-~~~e~~~a~~d~~~~~~~rq~~~~~~~-r~~d~y~~~~~ 296 (298)
T KOG0806|consen 238 APRGSHSIMVNPTGKVLAAAV-EKEEIIYADVDPSAIASRRQGLPVFRQ-RRLDLYSLDLF 296 (298)
T ss_pred ecCCcceeecCCcceEeeecc-CCCccccccCCHHHHHHHhcccchhhc-cchhhhhhhcc
Confidence 6778 9999999999999996 556699999999999999999999988 99999986543
No 37
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.53 E-value=1.6e-14 Score=115.35 Aligned_cols=126 Identities=23% Similarity=0.217 Sum_probs=105.5
Q ss_pred CcHHHHHHHhCCCcEEEEeCCC----ChhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTAD----SRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC 76 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~----~~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~ 76 (162)
+|+.+-...++||+|++.|++. +...|....|..|+.|.||+.+.|++|++ .+|.+.. +++..-.+.|.-.|
T Consensus 240 hplnwlmy~lngaeiifnpsatvgalseplwpiearnaaianh~ft~~inrvgte-vfpneft---sgdgkpah~dfghf 315 (387)
T KOG0808|consen 240 HPLNWLMYGLNGAEIIFNPSATVGALSEPLWPIEARNAAIANHYFTGSINRVGTE-VFPNEFT---SGDGKPAHNDFGHF 315 (387)
T ss_pred CchhhhhhhccCceEEECCccccccccCccCchhhhhhhhhhceEEEeecccccc-cCCCccc---CCCCCccccccccc
Confidence 6999999999999999999997 35789999999999999999999999986 5666532 33333345566689
Q ss_pred cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceee
Q 031270 77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSL 131 (162)
Q Consensus 77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~ 131 (162)
+|.|.+..||+..--......++++++++|++.+++.+..|.+-.- .|-|+|.-
T Consensus 316 ygssy~aapd~srtp~lsr~rdgllia~ldlnlcrq~kd~wgfrmt-~ryemya~ 369 (387)
T KOG0808|consen 316 YGSSYFAAPDASRTPSLSRYRDGLLIADLDLNLCRQYKDKWGFRMT-ARYEMYAD 369 (387)
T ss_pred ccceeeecCCCCCCccccccccceEEeecchHHHHHhhhhhcceeh-hhHHHHHH
Confidence 9999999999987666666799999999999999999988877665 77787763
No 38
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=99.48 E-value=1.5e-13 Score=111.16 Aligned_cols=80 Identities=23% Similarity=0.253 Sum_probs=69.5
Q ss_pred CcHHHHHHHhCCCcEEEEeCCC---C----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCC
Q 031270 1 MPLLRTALYGKGIEIYCAPTAD---S----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDS 73 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~---~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~ 73 (162)
.|++.|.++.+|++++++|+++ . ..+|..++++||+||++|||+||+.
T Consensus 165 fpe~~r~~~~~ga~iil~ps~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~------------------------- 219 (270)
T cd07571 165 FPELVRDAVRQGADLLVNITNDAWFGDSAGPYQHLAMARLRAIETGRPLVRAANT------------------------- 219 (270)
T ss_pred ChHHHHhhcccCCCEEEEcCcccccCCCcchHHHHHHHHHHHHHhCCCEEEEcCC-------------------------
Confidence 4899999999999999999863 1 2355677899999999999999962
Q ss_pred ccccceeEEECCCCceeecCCCCCccEEEEEechHH
Q 031270 74 VVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGE 109 (162)
Q Consensus 74 ~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~ 109 (162)
|.|+|+||+|++++++..++|+++++|||++.
T Consensus 220 ----G~S~ivdp~G~ii~~~~~~~e~~~~~~i~~~~ 251 (270)
T cd07571 220 ----GISAVIDPDGRIVARLPLFEAGVLVAEVPLRT 251 (270)
T ss_pred ----eeeEEECCCCcEEeecCCCcceEEEEEeccCC
Confidence 67999999999999997778999999999865
No 39
>PRK02628 nadE NAD synthetase; Reviewed
Probab=99.43 E-value=7.4e-13 Score=119.50 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=82.2
Q ss_pred cHH-HHHHHhCCCcEEEEeCCCC----hhhH-HHHHHHHhHhcCceEEEcC-cccccCCCCCCCCccccCcccCCCCCCc
Q 031270 2 PLL-RTALYGKGIEIYCAPTADS----RDVW-QASMTHIALEGGCFVLSAN-QFCRRKDYPPPPEYVFSGIEEDLTPDSV 74 (162)
Q Consensus 2 P~~-~r~la~~Gaei~v~p~a~~----~~~w-~~~~~arA~En~~fVv~aN-~~g~~~~~~~~~~~~~~~~e~~~~~~~~ 74 (162)
|+. .+.|+++||+|+++|++|+ ..+| ..+.+++|.++++++|++| ++|.. .++.
T Consensus 184 Pe~~~~~la~~GAdIil~psAsp~~~gk~~~r~~l~~~~aar~~~~~v~~n~~~G~~-------------------~~~~ 244 (679)
T PRK02628 184 PIPPSSYAALAGATVLANLSASNITVGKADYRRLLVASQSARCLAAYVYAAAGVGES-------------------TTDL 244 (679)
T ss_pred cCchhhHHhcCCCEEEEeCCCCCcccCcHHHHHHHHHHHHHHhCcEEEEEecccccC-------------------CCCe
Confidence 665 5899999999999999985 3355 4677889999865555555 55532 1457
Q ss_pred cccceeEEECCCCceeecCCC--CCccEEEEEechHHHHHHHhhCCcCCCCCC
Q 031270 75 VCAGGSVIISPSGTVLAGPNY--EGEALISADLDLGEIAREKFAFDVVGHYSR 125 (162)
Q Consensus 75 ~~~G~S~Iv~P~G~~la~~~~--~~E~iv~adiDl~~i~~~R~~~~~~~~y~R 125 (162)
.|.|+|+|++ +|++++++.. .+|+++++|||++.++..|..++++.+ +|
T Consensus 245 vf~G~S~I~~-~G~vla~a~~f~~~e~l~~adiDl~~v~~~R~~~~~~~d-~~ 295 (679)
T PRK02628 245 AWDGQTLIYE-NGELLAESERFPREEQLIVADVDLERLRQERLRNGSFDD-NA 295 (679)
T ss_pred EEeCeEEEEc-CCeEEEecCCCCCCCcEEEEEEcHHHHHHHHhhcCCccc-ch
Confidence 8999999998 9999999863 456799999999999999999988877 55
No 40
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=99.37 E-value=2.3e-12 Score=116.63 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=76.7
Q ss_pred CcHHHHH-HHhCCCcEEEEeCCCChhhHHHHHHHHhHhc------CceEEEcCcccccCCCCCCCCccccCcccCCCCCC
Q 031270 1 MPLLRTA-LYGKGIEIYCAPTADSRDVWQASMTHIALEG------GCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDS 73 (162)
Q Consensus 1 ~P~~~r~-la~~Gaei~v~p~a~~~~~w~~~~~arA~En------~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~ 73 (162)
.|+..+. |+++||+|+++|++++........|+++++| ++| |+||++|.+ .+.
T Consensus 179 fPe~p~~~lAl~GAdII~n~sas~~~~gK~~~R~rai~n~sa~~~~~y-vyaN~~Ge~-------------------~~~ 238 (700)
T PLN02339 179 TPQAPHIDLALNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGGVY-LYANQRGCD-------------------GGR 238 (700)
T ss_pred CChHHHHHHHHcCCeEEEECCCChhhcCCHHHHHHHHHHHHHHhCCcE-EEEcCCccC-------------------CCc
Confidence 3788885 9999999999999874211123444555555 777 589999853 134
Q ss_pred ccccceeEEECCCCceeecCCCC---CccEEEEEechHHHHHHHhhCCcCCC
Q 031270 74 VVCAGGSVIISPSGTVLAGPNYE---GEALISADLDLGEIAREKFAFDVVGH 122 (162)
Q Consensus 74 ~~~~G~S~Iv~P~G~~la~~~~~---~E~iv~adiDl~~i~~~R~~~~~~~~ 122 (162)
..|.|+|+| +|+|++++++..+ +++++++|||++.++..|..++.+.+
T Consensus 239 lvf~G~S~I-~~~G~ilaea~~F~~~~~~vi~adIDl~~l~~~R~~~~~~~~ 289 (700)
T PLN02339 239 LYYDGCACI-VVNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFRE 289 (700)
T ss_pred eEEcCceEE-eCCCcEeEecCCcccCCceEEEEEEehHHhhhHhhcCCchhh
Confidence 678888988 5899999998653 56799999999999999988887765
No 41
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=99.26 E-value=4.6e-12 Score=104.05 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=51.6
Q ss_pred cHHHHHHHhCCCcEEEEeCCCCh------------hhH---HHHHHHHhH------hcCceEEEcCcccccCCCCCCCCc
Q 031270 2 PLLRTALYGKGIEIYCAPTADSR------------DVW---QASMTHIAL------EGGCFVLSANQFCRRKDYPPPPEY 60 (162)
Q Consensus 2 P~~~r~la~~Gaei~v~p~a~~~------------~~w---~~~~~arA~------En~~fVv~aN~~g~~~~~~~~~~~ 60 (162)
||+.|.|+++||+|+++|++|+. .+| ..+.++||+ |||+|||+||++|.+
T Consensus 182 ~E~~r~la~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~~~a~~eN~~~vv~~Nr~G~~--------- 252 (295)
T cd07566 182 FEFATHVLDNGTELIICPMAWLHSLSPTELTVLPQEPDTETVSYWLQRFEPLRAEPLEGTQVVFCNRIGTE--------- 252 (295)
T ss_pred HHHHHHHHHCCCCEEEEechhcCCCCcccccccCCCcchhHHHHHHHhhcccccCCCCceEEEEEeccCcc---------
Confidence 49999999999999999999842 133 344556664 999999999999986
Q ss_pred cccCcccCCCCCCccccceeEEECC
Q 031270 61 VFSGIEEDLTPDSVVCAGGSVIISP 85 (162)
Q Consensus 61 ~~~~~e~~~~~~~~~~~G~S~Iv~P 85 (162)
++..|.|+|+|++=
T Consensus 253 -----------~~~~f~G~S~i~~~ 266 (295)
T cd07566 253 -----------NDTLYAGSSAVIGI 266 (295)
T ss_pred -----------CCceecCccceeee
Confidence 46789999999863
No 42
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=99.18 E-value=8.2e-11 Score=102.87 Aligned_cols=79 Identities=18% Similarity=0.129 Sum_probs=67.7
Q ss_pred CcHHHHHHHhCCCcEEEEeCC--C-C--h--hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCC
Q 031270 1 MPLLRTALYGKGIEIYCAPTA--D-S--R--DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDS 73 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a--~-~--~--~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~ 73 (162)
.|+..|.++.+|+|++++|++ | + . .++..+.++||+||+++++.+|.
T Consensus 385 fpe~~r~~~~~ga~~lv~~snd~Wf~~~~~~~qh~~~~~~RAiEng~~vvra~n-------------------------- 438 (505)
T PRK00302 385 FPEEVRANVRQGADLLLNISNDAWFGDSIGPYQHFQMARMRALELGRPLIRATN-------------------------- 438 (505)
T ss_pred ChHHHHhhccCCCCEEEEccchhhcCCCCchHHHHHHHHHHHHHhCCceEEecC--------------------------
Confidence 388999999999999999998 3 1 2 24556689999999999999975
Q ss_pred ccccceeEEECCCCceeecCCCCCccEEEEEechH
Q 031270 74 VVCAGGSVIISPSGTVLAGPNYEGEALISADLDLG 108 (162)
Q Consensus 74 ~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~ 108 (162)
.|.|+|+||+|+++++.+.++++++++++|+.
T Consensus 439 ---~G~Saiidp~G~i~~~~~~~~~~~l~~~i~~~ 470 (505)
T PRK00302 439 ---TGITAVIDPLGRIIAQLPQFTEGVLDGTVPPT 470 (505)
T ss_pred ---ceeeEEECCCCCEeeecCCCceeEEEEEeccC
Confidence 27899999999999999878999999999973
No 43
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=98.71 E-value=2.8e-08 Score=84.28 Aligned_cols=59 Identities=29% Similarity=0.272 Sum_probs=50.4
Q ss_pred cHHHHHHHhCCCcEEEEeCCCC-------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCc
Q 031270 2 PLLRTALYGKGIEIYCAPTADS-------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSV 74 (162)
Q Consensus 2 P~~~r~la~~Gaei~v~p~a~~-------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~ 74 (162)
|+..|.++.+|+|++++|++.+ ..++..+.+.||+||++|++.||..
T Consensus 326 p~~~r~~~~~Ga~~lv~~snd~wf~~s~~~~qh~~~~~~RAiEn~~~vvra~n~-------------------------- 379 (391)
T TIGR00546 326 PDLVRASARQGAELLVNLTNDAWFGDSSGPWQHFALARFRAIENGRPLVRATNT-------------------------- 379 (391)
T ss_pred hHHHHhhccCCCCEEEEecchhhcCCCCChHHHHHHHHHHHHHhCCcEEEecCC--------------------------
Confidence 8899999999999999999742 2345577899999999999999972
Q ss_pred cccceeEEECCCCce
Q 031270 75 VCAGGSVIISPSGTV 89 (162)
Q Consensus 75 ~~~G~S~Iv~P~G~~ 89 (162)
|.|+|+||+|++
T Consensus 380 ---G~S~vidp~G~i 391 (391)
T TIGR00546 380 ---GISAVIDPRGRT 391 (391)
T ss_pred ---ceeEEECCCCCC
Confidence 679999999975
No 44
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.34 E-value=2.4e-06 Score=75.39 Aligned_cols=77 Identities=27% Similarity=0.322 Sum_probs=64.4
Q ss_pred cHHHHHHHhCCCcEEEEeCCCC-----hhhHHH--HHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCc
Q 031270 2 PLLRTALYGKGIEIYCAPTADS-----RDVWQA--SMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSV 74 (162)
Q Consensus 2 P~~~r~la~~Gaei~v~p~a~~-----~~~w~~--~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~ 74 (162)
|+..|....||+|+++++|+.. ...|++ +.+.||+|++.+++-++..
T Consensus 397 ~~~~r~~~~qga~~Lin~SNDAWf~~s~~p~QH~~~a~~RAiE~grp~iRAtNt-------------------------- 450 (518)
T COG0815 397 PELVRASARQGAELLLNLSNDAWFGGSWGPYQHFQQARVRAVELGRPLVRATNT-------------------------- 450 (518)
T ss_pred hHHHHHhhcCCCcEEEEcccccccCCCcchHHHHHHHHHHHHhcCCcEEEEcCC--------------------------
Confidence 7889999999999999998852 234433 4589999999999988774
Q ss_pred cccceeEEECCCCceeecCCCCCccEEEEEech
Q 031270 75 VCAGGSVIISPSGTVLAGPNYEGEALISADLDL 107 (162)
Q Consensus 75 ~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl 107 (162)
|-|.||||+|++++..+.+..+++.+.+-+
T Consensus 451 ---GiSavIdp~Gri~~~l~~~~~~~l~~~v~~ 480 (518)
T COG0815 451 ---GISAVIDPRGRILAQLPYFTRGVLDATVPL 480 (518)
T ss_pred ---cceEEECCCCCEEeecCCCCcceeeeeecc
Confidence 568999999999999988899998888764
No 45
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=97.27 E-value=0.00057 Score=58.94 Aligned_cols=39 Identities=10% Similarity=-0.009 Sum_probs=31.9
Q ss_pred CCCcEEEEeCCCC-------hhhHHHHHHHHhHhcCceEEEcCccc
Q 031270 11 KGIEIYCAPTADS-------RDVWQASMTHIALEGGCFVLSANQFC 49 (162)
Q Consensus 11 ~Gaei~v~p~a~~-------~~~w~~~~~arA~En~~fVv~aN~~g 49 (162)
+|+|++++++++. ..+|...++.||+||+.+++.+...|
T Consensus 359 ~ga~~Lv~iSNdaWfg~s~~p~~~~~~~r~RAiE~g~pvvratNtG 404 (418)
T PRK12291 359 GNPKIVIAISNNAWFVPSIEPTLQKLLLKYYARKYGKTIYHSANGS 404 (418)
T ss_pred cCCCEEEEecccccCCCChhHHHHHHHHHHHHHHhCCcEEEEcCCc
Confidence 9999999998741 24667788999999999999987743
No 46
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=96.58 E-value=0.0076 Score=52.90 Aligned_cols=90 Identities=21% Similarity=0.323 Sum_probs=64.8
Q ss_pred HHHhCCCcEEEEeCCCChhh------HHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccccee
Q 031270 7 ALYGKGIEIYCAPTADSRDV------WQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGS 80 (162)
Q Consensus 7 ~la~~Gaei~v~p~a~~~~~------w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~G~S 80 (162)
.|+++|+||++..+.+.... -..+.-+-+...++| +++|+-|-+ ++.+.|.|.|
T Consensus 187 ~mal~GVei~~NaSGShh~LrK~~~r~~li~~at~k~GGvY-lyaNqrGCD-------------------G~RlYydGca 246 (706)
T KOG2303|consen 187 DMALDGVEIITNASGSHHELRKLNTRVDLILNATSKCGGVY-LYANQRGCD-------------------GDRLYYDGCA 246 (706)
T ss_pred hhhhCceEEEecCCccHHHHhhhhhhhHHHhcchhhcceEE-EeeccCCCC-------------------CceeEecchh
Confidence 58999999999987763211 122334455555555 678998875 2456777877
Q ss_pred EEECCCCceeecCC---CCCccEEEEEechHHHHHHHhhC
Q 031270 81 VIISPSGTVLAGPN---YEGEALISADLDLGEIAREKFAF 117 (162)
Q Consensus 81 ~Iv~P~G~~la~~~---~~~E~iv~adiDl~~i~~~R~~~ 117 (162)
+|+ -+|+++|+.. -.+-+++.|.+|+++++..|...
T Consensus 247 ~Ia-~NG~vlAqg~QFsl~DveVv~atvDle~vrsyR~~~ 285 (706)
T KOG2303|consen 247 MIA-MNGSVLAQGSQFSLDDVEVVTATVDLEDVRSYRASI 285 (706)
T ss_pred hee-ecceeeeecccccccceEEEEEEecHHHHHHHHhhh
Confidence 765 5799999885 24568999999999999999544
No 47
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=81.20 E-value=9.7 Score=29.81 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=40.0
Q ss_pred HHHHhCCCcEEEEeCCC--C---hh----------hHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCC
Q 031270 6 TALYGKGIEIYCAPTAD--S---RD----------VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLT 70 (162)
Q Consensus 6 r~la~~Gaei~v~p~a~--~---~~----------~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~ 70 (162)
...+.+|++++|-|-.+ + .. .+...++..|.+++++++.-...-.
T Consensus 26 ~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~-------------------- 85 (253)
T cd07583 26 EEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAKKHGVNIVAGSVAEK-------------------- 85 (253)
T ss_pred HHHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHHHcCcEEEeceEEec--------------------
Confidence 44577899999998543 1 11 1234466778899999885432111
Q ss_pred CCCccccceeEEECCCCceee
Q 031270 71 PDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 71 ~~~~~~~G~S~Iv~P~G~~la 91 (162)
++..++-.+.+++|+|+++.
T Consensus 86 -~~~~~yNs~~~i~~~G~i~~ 105 (253)
T cd07583 86 -EGGKLYNTAYVIDPDGELIA 105 (253)
T ss_pred -CCCcEEEEEEEECCCCcEEE
Confidence 11124456678899997654
No 48
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=81.04 E-value=9.6 Score=29.98 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=41.2
Q ss_pred HHHHHhCCCcEEEEeCCC--C--h-------------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCccc
Q 031270 5 RTALYGKGIEIYCAPTAD--S--R-------------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEE 67 (162)
Q Consensus 5 ~r~la~~Gaei~v~p~a~--~--~-------------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~ 67 (162)
....+.+|++|+|-|=.+ + . ..+...++..|.+++++++.-...-.+
T Consensus 24 i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~---------------- 87 (265)
T cd07572 24 IEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGDGPTLQALSELAKEHGIWLVGGSIPERD---------------- 87 (265)
T ss_pred HHHHHHCCCCEEECCccccCcCcchhhhhhhhccccCChHHHHHHHHHHHCCeEEEEeeecccc----------------
Confidence 345677899999998443 1 0 022334567788999998864321111
Q ss_pred CCCCCCccccceeEEECCCCceee
Q 031270 68 DLTPDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 68 ~~~~~~~~~~G~S~Iv~P~G~~la 91 (162)
.+...++-.+.+++|+|+++.
T Consensus 88 ---~~~~~~yNs~~~i~~~G~i~~ 108 (265)
T cd07572 88 ---DDDGKVYNTSLVFDPDGELVA 108 (265)
T ss_pred ---CCCCcEEEEEEEECCCCeEEe
Confidence 001234566788999998753
No 49
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=80.42 E-value=7.4 Score=28.78 Aligned_cols=64 Identities=17% Similarity=0.246 Sum_probs=42.9
Q ss_pred HHHHHhCCCcEEEEeCCCC--h---------------------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCcc
Q 031270 5 RTALYGKGIEIYCAPTADS--R---------------------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYV 61 (162)
Q Consensus 5 ~r~la~~Gaei~v~p~a~~--~---------------------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~ 61 (162)
.+..+.+|++|++.|-.+- . ..+...++..|.+++++++.- ..-.+
T Consensus 27 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G-~~~~~---------- 95 (186)
T PF00795_consen 27 IEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIVAG-IPERD---------- 95 (186)
T ss_dssp HHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEEEE-EEEEE----------
T ss_pred HHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccccHHHHHHHHHHHhcCCccccc-ccccc----------
Confidence 3456778999999985541 1 122334677888999998877 32222
Q ss_pred ccCcccCCCCCCccccceeEEECCCCcee
Q 031270 62 FSGIEEDLTPDSVVCAGGSVIISPSGTVL 90 (162)
Q Consensus 62 ~~~~e~~~~~~~~~~~G~S~Iv~P~G~~l 90 (162)
...++-.+.+++|+|+++
T Consensus 96 -----------~~~~~N~~~~~~~~g~~~ 113 (186)
T PF00795_consen 96 -----------DGGLYNSAVVIDPDGEIL 113 (186)
T ss_dssp -----------TTEEEEEEEEEETTSEEE
T ss_pred -----------cccccceeEEEEeeeccc
Confidence 123557788899999887
No 50
>PLN02798 nitrilase
Probab=80.40 E-value=12 Score=30.27 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=40.8
Q ss_pred HHHHHhCCCcEEEEeCCC---Ch--h-----------hHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccC
Q 031270 5 RTALYGKGIEIYCAPTAD---SR--D-----------VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEED 68 (162)
Q Consensus 5 ~r~la~~Gaei~v~p~a~---~~--~-----------~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~ 68 (162)
.+..+.+|++|+|-|=.+ +. . .+...++..|.+++++++.-...-..
T Consensus 35 i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~~----------------- 97 (286)
T PLN02798 35 AKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARESGLWLSLGGFQEKG----------------- 97 (286)
T ss_pred HHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHHcCeEEEEeeeEccc-----------------
Confidence 345667999999998642 11 1 13344567788999998742111000
Q ss_pred CCCCCccccceeEEECCCCceee
Q 031270 69 LTPDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 69 ~~~~~~~~~G~S~Iv~P~G~~la 91 (162)
.++...+-.+.+++|+|+++.
T Consensus 98 --~~~~~~yNs~~vi~~~G~i~~ 118 (286)
T PLN02798 98 --PDDSHLYNTHVLIDDSGEIRS 118 (286)
T ss_pred --CCCCceEEEEEEECCCCCEEE
Confidence 011234566788999998764
No 51
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=80.33 E-value=11 Score=29.56 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=41.1
Q ss_pred HHHHHhCCCcEEEEeCCC----Ch-------------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCccc
Q 031270 5 RTALYGKGIEIYCAPTAD----SR-------------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEE 67 (162)
Q Consensus 5 ~r~la~~Gaei~v~p~a~----~~-------------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~ 67 (162)
...++.+|++++|-|=.+ .. ..|...++..|.+++++++.-... ..
T Consensus 23 i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~---------------- 85 (255)
T cd07581 23 LAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLARELGITVVAGMFE-PA---------------- 85 (255)
T ss_pred HHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHHHHcCeEEEEEeee-eC----------------
Confidence 445678999999998443 11 123444677888999998874221 11
Q ss_pred CCCCCCccccceeEEECCCCceee
Q 031270 68 DLTPDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 68 ~~~~~~~~~~G~S~Iv~P~G~~la 91 (162)
.++ ..+-.+.+++|+|+++.
T Consensus 86 ---~~~-~~yNs~~~i~~~G~i~~ 105 (255)
T cd07581 86 ---GDG-RVYNTLVVVGPDGEIIA 105 (255)
T ss_pred ---CCC-cEEEeEEEECCCCcEEE
Confidence 011 24566778889888654
No 52
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=80.20 E-value=10 Score=30.09 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=39.3
Q ss_pred HHHHHhCCCcEEEEeCCC--Ch------------------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccC
Q 031270 5 RTALYGKGIEIYCAPTAD--SR------------------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSG 64 (162)
Q Consensus 5 ~r~la~~Gaei~v~p~a~--~~------------------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~ 64 (162)
.+..+.+|++|+|-|=.+ +. ..+...++..|.+++++++..-. ..
T Consensus 25 i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~i~~g~~--~~------------- 89 (279)
T TIGR03381 25 VREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGVVIPVSFF--EK------------- 89 (279)
T ss_pred HHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCcEEEEeee--ec-------------
Confidence 345677999999998532 10 01233456788899999875211 11
Q ss_pred cccCCCCCCccccceeEEECCCCceee
Q 031270 65 IEEDLTPDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 65 ~e~~~~~~~~~~~G~S~Iv~P~G~~la 91 (162)
++..++-..++++|+|+++.
T Consensus 90 -------~~~~~yNs~~~i~~~G~i~~ 109 (279)
T TIGR03381 90 -------AGNAYYNSLAMIDADGSVLG 109 (279)
T ss_pred -------CCCceEEeEEEECCCCCEEE
Confidence 11124455678889998763
No 53
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=79.69 E-value=10 Score=30.37 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=38.8
Q ss_pred HHHHhCCCcEEEEeCCC--Ch------h------------hHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCc
Q 031270 6 TALYGKGIEIYCAPTAD--SR------D------------VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGI 65 (162)
Q Consensus 6 r~la~~Gaei~v~p~a~--~~------~------------~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~ 65 (162)
+..+.+|+++++-|=.+ +. . .+...++..|.+++++++. |..+ .
T Consensus 37 ~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~----g~~~---~--------- 100 (287)
T cd07568 37 REAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKEYNMVLIL----PIYE---K--------- 100 (287)
T ss_pred HHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHCCEEEEE----EeEE---E---------
Confidence 44567899999998532 10 0 1223367788999999996 2210 0
Q ss_pred ccCCCCCCccccceeEEECCCCcee
Q 031270 66 EEDLTPDSVVCAGGSVIISPSGTVL 90 (162)
Q Consensus 66 e~~~~~~~~~~~G~S~Iv~P~G~~l 90 (162)
.....++-.+++++|+|+++
T Consensus 101 -----~~~~~~yNs~~~i~~~G~i~ 120 (287)
T cd07568 101 -----EQGGTLYNTAAVIDADGTYL 120 (287)
T ss_pred -----cCCCcEEEEEEEECCCCcEe
Confidence 01113445677889999865
No 54
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=79.10 E-value=13 Score=29.26 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=39.8
Q ss_pred HHHHhCCCcEEEEeCCC--Ch-------h----------hHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcc
Q 031270 6 TALYGKGIEIYCAPTAD--SR-------D----------VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIE 66 (162)
Q Consensus 6 r~la~~Gaei~v~p~a~--~~-------~----------~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e 66 (162)
...+.+|++|+|-|-.+ +. . .....++..|.+++++++.-...-..
T Consensus 26 ~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~--------------- 90 (258)
T cd07584 26 KEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPIDGPTVRLFSELAKELGVYIVCGFVEKGG--------------- 90 (258)
T ss_pred HHHHHcCCCEEEcccccccCCCccccchhhHhhccCCCCcHHHHHHHHHHHcCeEEEEeehcccC---------------
Confidence 34567899999998543 11 0 12234567788999988765431110
Q ss_pred cCCCCCCccccceeEEECCCCcee
Q 031270 67 EDLTPDSVVCAGGSVIISPSGTVL 90 (162)
Q Consensus 67 ~~~~~~~~~~~G~S~Iv~P~G~~l 90 (162)
+...++-..++++|+|+++
T Consensus 91 -----~~~~~~Ns~~~i~~~G~i~ 109 (258)
T cd07584 91 -----VPGKVYNSAVVIDPEGESL 109 (258)
T ss_pred -----CCCceEEEEEEECCCCCEE
Confidence 1113456677899999875
No 55
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=79.09 E-value=14 Score=28.82 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=40.4
Q ss_pred HHHHHhCCCcEEEEeCCC--C--h------------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccC
Q 031270 5 RTALYGKGIEIYCAPTAD--S--R------------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEED 68 (162)
Q Consensus 5 ~r~la~~Gaei~v~p~a~--~--~------------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~ 68 (162)
.+.++.+|++++|.|-.+ + . ..+...++..|.+++++++.--.. .
T Consensus 25 i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~-~------------------ 85 (254)
T cd07576 25 AARAAAAGADLLVFPELFLTGYNIGDAVARLAEPADGPALQALRAIARRHGIAIVVGYPE-R------------------ 85 (254)
T ss_pred HHHHHHcCCCEEEccCccccCCCCcchhhhhhcccCChHHHHHHHHHHHcCCEEEEeccc-c------------------
Confidence 455678999999998543 1 1 123344567788999988865221 1
Q ss_pred CCCCCccccceeEEECCCCceee
Q 031270 69 LTPDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 69 ~~~~~~~~~G~S~Iv~P~G~~la 91 (162)
.+...+-..++++|+|+++.
T Consensus 86 ---~~~~~yNs~~~i~~~G~i~~ 105 (254)
T cd07576 86 ---AGGAVYNAAVLIDEDGTVLA 105 (254)
T ss_pred ---CCCceEEEEEEECCCCCEee
Confidence 01124456778889998653
No 56
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=76.33 E-value=17 Score=29.52 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=41.3
Q ss_pred HHHHHHhCCCcEEEEeCCCC----h-----------hhH--------------HHHHHHHhHhcCceEEEcCcccccCCC
Q 031270 4 LRTALYGKGIEIYCAPTADS----R-----------DVW--------------QASMTHIALEGGCFVLSANQFCRRKDY 54 (162)
Q Consensus 4 ~~r~la~~Gaei~v~p~a~~----~-----------~~w--------------~~~~~arA~En~~fVv~aN~~g~~~~~ 54 (162)
+.+.++.+|++|+|-|=.+. . +.| ...++..|.+++++++..... .+
T Consensus 25 ~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~--- 100 (297)
T cd07564 25 LIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELERLAEAARENGIYVVLGVSE-RD--- 100 (297)
T ss_pred HHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHHHHHHHHHcCcEEEEeeEe-cc---
Confidence 34556789999999985431 0 111 122456788999999865321 11
Q ss_pred CCCCCccccCcccCCCCCCccccceeEEECCCCceeec
Q 031270 55 PPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAG 92 (162)
Q Consensus 55 ~~~~~~~~~~~e~~~~~~~~~~~G~S~Iv~P~G~~la~ 92 (162)
++ .++-.+++++|+|+++..
T Consensus 101 -----------------~~-~~yNs~~vi~~~G~i~~~ 120 (297)
T cd07564 101 -----------------GG-TLYNTQLLIDPDGELLGK 120 (297)
T ss_pred -----------------CC-ceEEEEEEEcCCCCEeee
Confidence 11 244667789999987753
No 57
>PLN00202 beta-ureidopropionase
Probab=74.37 E-value=14 Score=31.84 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=40.9
Q ss_pred HHHHhCCCcEEEEeCCC--Ch------hhH-----------HHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcc
Q 031270 6 TALYGKGIEIYCAPTAD--SR------DVW-----------QASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIE 66 (162)
Q Consensus 6 r~la~~Gaei~v~p~a~--~~------~~w-----------~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e 66 (162)
..++.+|++|+|-|=.| +. ..| ...++..|.+++++++.. +...+
T Consensus 120 ~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~g~~~~~l~~lA~~~~i~Iv~G--~~e~~-------------- 183 (405)
T PLN00202 120 DAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTKFLQELARKYNMVIVSP--ILERD-------------- 183 (405)
T ss_pred HHHHHCCCCEEEecchhccccccccccchHHHHhhhCCCHHHHHHHHHHHHCCeEEEEE--eeeee--------------
Confidence 35678899999998543 21 123 234577789999999963 22110
Q ss_pred cCCCCCCccccceeEEECCCCceee
Q 031270 67 EDLTPDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 67 ~~~~~~~~~~~G~S~Iv~P~G~~la 91 (162)
. ..+-.++-.+++++|+|+++.
T Consensus 184 --~-~~~~~~yNSa~vI~~~G~iig 205 (405)
T PLN00202 184 --V-NHGETLWNTAVVIGNNGNIIG 205 (405)
T ss_pred --c-CCCCcEEEEEEEECCCCcEEE
Confidence 0 011135566788899998764
No 58
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=73.67 E-value=21 Score=29.28 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=37.3
Q ss_pred CCCcEEEEeCCC--C--h----hh-----------HHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCC
Q 031270 11 KGIEIYCAPTAD--S--R----DV-----------WQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTP 71 (162)
Q Consensus 11 ~Gaei~v~p~a~--~--~----~~-----------w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~ 71 (162)
+|++|+|.|=.+ + . .. +...++..|.+++++++.-.. -... .
T Consensus 35 ~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~G~~-e~~~------------------~ 95 (295)
T cd07566 35 KKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKKFNCHVVIGYP-EKVD------------------E 95 (295)
T ss_pred CCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHhcCCEEEEeee-EecC------------------C
Confidence 899999998543 1 0 00 112345678899999886421 1110 0
Q ss_pred CCccccceeEEECCCCceee
Q 031270 72 DSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 72 ~~~~~~G~S~Iv~P~G~~la 91 (162)
....++-.+.+++|+|++++
T Consensus 96 ~~~~~yNta~vi~~~G~ii~ 115 (295)
T cd07566 96 SSPKLYNSALVVDPEGEVVF 115 (295)
T ss_pred CCCceEEEEEEEcCCCeEEE
Confidence 00135577889999998764
No 59
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=72.85 E-value=21 Score=28.82 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=37.8
Q ss_pred CCCcEEEEeCCC--Ch------hh-------------HHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCC
Q 031270 11 KGIEIYCAPTAD--SR------DV-------------WQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDL 69 (162)
Q Consensus 11 ~Gaei~v~p~a~--~~------~~-------------w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~ 69 (162)
+|++|+|-|=.+ +. .. +...++..|.+++++++.-... .+.
T Consensus 41 ~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G~~e-~~~----------------- 102 (294)
T cd07582 41 LPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPETEALGEKAKELNVYIAANAYE-RDP----------------- 102 (294)
T ss_pred CCceEEEcCccccccCCcccchhhhhhhhccccCCCHHHHHHHHHHHHcCEEEEEeeee-ecC-----------------
Confidence 589999998543 10 11 2244677888999999864421 110
Q ss_pred CCCCccccceeEEECCCCceee
Q 031270 70 TPDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 70 ~~~~~~~~G~S~Iv~P~G~~la 91 (162)
.....++-.+.+++|+|++++
T Consensus 103 -~~~~~~yNsa~~i~~~G~i~~ 123 (294)
T cd07582 103 -DFPGLYFNTAFIIDPSGEIIL 123 (294)
T ss_pred -CCCCcEEEEEEEECCCCcEEE
Confidence 001234566888999998775
No 60
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=72.39 E-value=21 Score=29.00 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=40.1
Q ss_pred HHHHHhCCCcEEEEeCCC--C------------hhhH---------HHHHHHHhHhcCceEEEcCcccccCCCCCCCCcc
Q 031270 5 RTALYGKGIEIYCAPTAD--S------------RDVW---------QASMTHIALEGGCFVLSANQFCRRKDYPPPPEYV 61 (162)
Q Consensus 5 ~r~la~~Gaei~v~p~a~--~------------~~~w---------~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~ 61 (162)
.+.++.+|++|+|-|=.+ + ...| ...+...|.+++++++.-..--..+
T Consensus 31 i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~~--------- 101 (302)
T cd07569 31 LEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLFDRAKELGIGFYLGYAELTED--------- 101 (302)
T ss_pred HHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHHHHHHHhCeEEEEeceeecCC---------
Confidence 455678999999998533 1 0111 1224567889999988653210000
Q ss_pred ccCcccCCCCCCccccceeEEECCCCceee
Q 031270 62 FSGIEEDLTPDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 62 ~~~~e~~~~~~~~~~~G~S~Iv~P~G~~la 91 (162)
.....++-..++++|+|+++.
T Consensus 102 ---------~~~~~~yNsa~~i~~~G~i~~ 122 (302)
T cd07569 102 ---------GGVKRRFNTSILVDKSGKIVG 122 (302)
T ss_pred ---------CCcceeeeEEEEECCCCCEee
Confidence 001134456778999998764
No 61
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=71.68 E-value=18 Score=28.92 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=40.0
Q ss_pred HHHhCCCcEEEEeCCCCh------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccccee
Q 031270 7 ALYGKGIEIYCAPTADSR------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGS 80 (162)
Q Consensus 7 ~la~~Gaei~v~p~a~~~------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~G~S 80 (162)
..+.+|+++++.|=.+-. ......++..|.+++++++.-...-.+ ++..++-.+
T Consensus 34 ~a~~~ga~lvvfPE~~l~g~~~~~~~~~~~l~~~ak~~~i~ii~G~~~~~~--------------------~~~~~~Ns~ 93 (270)
T cd07571 34 ELADEKPDLVVWPETALPFDLQRDPDALARLARAARAVGAPLLTGAPRREP--------------------GGGRYYNSA 93 (270)
T ss_pred hcccCCCCEEEecCCcCCcccccCHHHHHHHHHHHHhcCCeEEEeeeeecc--------------------CCCceEEEE
Confidence 445679999999855421 123344566788999998874432110 111344567
Q ss_pred EEECCCCceee
Q 031270 81 VIISPSGTVLA 91 (162)
Q Consensus 81 ~Iv~P~G~~la 91 (162)
.+++|+|+++.
T Consensus 94 ~~i~~~G~i~~ 104 (270)
T cd07571 94 LLLDPGGGILG 104 (270)
T ss_pred EEECCCCCCcC
Confidence 78999998654
No 62
>PLN02747 N-carbamolyputrescine amidase
Probab=70.54 E-value=21 Score=28.77 Aligned_cols=40 Identities=23% Similarity=0.126 Sum_probs=26.4
Q ss_pred HHHHHhCCCcEEEEeCCCC-----h----h-----------hHHHHHHHHhHhcCceEEE
Q 031270 5 RTALYGKGIEIYCAPTADS-----R----D-----------VWQASMTHIALEGGCFVLS 44 (162)
Q Consensus 5 ~r~la~~Gaei~v~p~a~~-----~----~-----------~w~~~~~arA~En~~fVv~ 44 (162)
.+..+.+|++|+|-|=.+. . . .+...++.-|.+++++++.
T Consensus 31 i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 90 (296)
T PLN02747 31 VREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLAKELGVVIPV 90 (296)
T ss_pred HHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHcCeEEEe
Confidence 4456778999999985431 0 0 1223456678899998875
No 63
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=70.27 E-value=30 Score=27.52 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=39.9
Q ss_pred HHHHHHhCCCcEEEEeCCC--Ch-------h-----------hHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCcccc
Q 031270 4 LRTALYGKGIEIYCAPTAD--SR-------D-----------VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFS 63 (162)
Q Consensus 4 ~~r~la~~Gaei~v~p~a~--~~-------~-----------~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~ 63 (162)
+.+.++.+|+++++.|=.+ +. . .+...++..|.+++++++.... -.+
T Consensus 24 ~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i~iv~g~~-~~~------------ 90 (284)
T cd07573 24 LVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGVVIPVSLF-EKR------------ 90 (284)
T ss_pred HHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCEEEEecce-eeC------------
Confidence 3455678999999998542 10 0 1123456678889998877332 111
Q ss_pred CcccCCCCCCccccceeEEECCCCceee
Q 031270 64 GIEEDLTPDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 64 ~~e~~~~~~~~~~~G~S~Iv~P~G~~la 91 (162)
+...++-...+++|+|++++
T Consensus 91 --------~~~~~yNs~~v~~~~G~i~~ 110 (284)
T cd07573 91 --------GNGLYYNSAVVIDADGSLLG 110 (284)
T ss_pred --------CCCcEEEEEEEECCCCCEEe
Confidence 11134456777888888653
No 64
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=68.48 E-value=26 Score=29.66 Aligned_cols=68 Identities=25% Similarity=0.307 Sum_probs=41.2
Q ss_pred HHHHHhCCCcEEEEeCCCC-------hh--hH------------HHHHHHHhHhcCceEEEcCcccccCCCCCCCCcccc
Q 031270 5 RTALYGKGIEIYCAPTADS-------RD--VW------------QASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFS 63 (162)
Q Consensus 5 ~r~la~~Gaei~v~p~a~~-------~~--~w------------~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~ 63 (162)
....+.+|++|+|.|=.|. .+ .| ...++..|.+++++|+.. ..-.+.
T Consensus 96 i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~g-i~e~~~----------- 163 (363)
T cd07587 96 IEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTKFCQELAKKYNMVIVSP-ILERDE----------- 163 (363)
T ss_pred HHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHHHHHHHHHHcCcEEEEe-eeeeec-----------
Confidence 3456778999999985431 10 12 224677899999999742 111100
Q ss_pred CcccCCCCCCccccceeEEECCCCceee
Q 031270 64 GIEEDLTPDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 64 ~~e~~~~~~~~~~~G~S~Iv~P~G~~la 91 (162)
..+...+-.+.+++|+|+++.
T Consensus 164 -------~~~~~~yNta~vi~~~G~ilg 184 (363)
T cd07587 164 -------EHGDTIWNTAVVISNSGNVLG 184 (363)
T ss_pred -------CCCCcEEEEEEEECCCCCEEe
Confidence 001234567888999998774
No 65
>PLN02504 nitrilase
Probab=67.78 E-value=31 Score=28.98 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=24.5
Q ss_pred HHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccccceeEEECCCCceee
Q 031270 31 MTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 31 ~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~G~S~Iv~P~G~~la 91 (162)
++..|.+++++|+.-... . .+..++-.+.+++|+|+++.
T Consensus 110 l~~~A~~~~i~iv~G~~e-~---------------------~~~~~yNsa~~i~~~G~i~~ 148 (346)
T PLN02504 110 LAAMAGKYKVYLVMGVIE-R---------------------DGYTLYCTVLFFDPQGQYLG 148 (346)
T ss_pred HHHHHHHcCCEEEEeeee-c---------------------CCCceEEEEEEECCCCCEEe
Confidence 455678899988764221 1 11135567778899998764
No 66
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=67.68 E-value=35 Score=26.26 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=40.8
Q ss_pred HHHHHhCCCcEEEEeCCC--C--h--------------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcc
Q 031270 5 RTALYGKGIEIYCAPTAD--S--R--------------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIE 66 (162)
Q Consensus 5 ~r~la~~Gaei~v~p~a~--~--~--------------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e 66 (162)
....+.+|++|+|-|-.+ + . ..+...++..|.+++++++.-... .
T Consensus 24 i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G~~~-~---------------- 86 (253)
T cd07197 24 IKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEELDGPTLEALAELAKELGIYIVAGIAE-K---------------- 86 (253)
T ss_pred HHHHHHCCCCEEEcCCccccCCccccchhhhhhcccCCchHHHHHHHHHHHhCeEEEeeeEE-c----------------
Confidence 345667899999998543 1 0 123445677788899998854331 1
Q ss_pred cCCCCCCccccceeEEECCCCceee
Q 031270 67 EDLTPDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 67 ~~~~~~~~~~~G~S~Iv~P~G~~la 91 (162)
++..++-.+.+++|+|+++.
T Consensus 87 -----~~~~~~N~~~~i~~~G~i~~ 106 (253)
T cd07197 87 -----DGDKLYNTAVVIDPDGEIIG 106 (253)
T ss_pred -----cCCceEEEEEEECCCCeEEE
Confidence 11134566788999998653
No 67
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=66.05 E-value=28 Score=27.64 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=26.4
Q ss_pred HHHHhCCCcEEEEeCCCC--------h----------------hhHHHHHHHHhHhcCceEEEcC
Q 031270 6 TALYGKGIEIYCAPTADS--------R----------------DVWQASMTHIALEGGCFVLSAN 46 (162)
Q Consensus 6 r~la~~Gaei~v~p~a~~--------~----------------~~w~~~~~arA~En~~fVv~aN 46 (162)
...+.+|++|+|.|=.+. . ..+...++..|.+++++++.-.
T Consensus 28 ~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~ 92 (280)
T cd07574 28 AEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAALTPDYVALFSELARKYGINIIAGS 92 (280)
T ss_pred HHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEecc
Confidence 345678999999985431 0 0112235677889999988654
No 68
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=62.68 E-value=48 Score=27.31 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=12.7
Q ss_pred HHHHHHhHhcCceEEE
Q 031270 29 ASMTHIALEGGCFVLS 44 (162)
Q Consensus 29 ~~~~arA~En~~fVv~ 44 (162)
..++..|.+++++++.
T Consensus 91 ~~l~~lAr~~~i~Iv~ 106 (299)
T cd07567 91 QRLSCAARENSIYVVA 106 (299)
T ss_pred HHHHHHHHHhCeEEEe
Confidence 3466788899999996
No 69
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=58.93 E-value=65 Score=25.19 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=27.2
Q ss_pred HHHHHhCCCcEEEEeCCCC-----h-----------hhHHHHHHHHhHhcCceEEEcC
Q 031270 5 RTALYGKGIEIYCAPTADS-----R-----------DVWQASMTHIALEGGCFVLSAN 46 (162)
Q Consensus 5 ~r~la~~Gaei~v~p~a~~-----~-----------~~w~~~~~arA~En~~fVv~aN 46 (162)
.+..+.+|++|+|.|-.+. . ..+...++..|.+++++++.-.
T Consensus 25 i~~a~~~gadliv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~ 82 (261)
T cd07585 25 TRKAAAQGAELVCFPEMCITGYTHVRALSREAEVPDGPSTQALSDLARRYGLTILAGL 82 (261)
T ss_pred HHHHHHcCCCEEEecccccccccCCcccchhcccCCChHHHHHHHHHHHcCcEEEEec
Confidence 3456678999999984321 0 1122345667889999988553
No 70
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=58.83 E-value=62 Score=26.28 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=35.7
Q ss_pred CCCcEEEEeCCC--Ch----h-----------hHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCC
Q 031270 11 KGIEIYCAPTAD--SR----D-----------VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDS 73 (162)
Q Consensus 11 ~Gaei~v~p~a~--~~----~-----------~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~ 73 (162)
+|++|+|-|=.+ +. . .+...++..|.+++++++.. ..-..+ ...
T Consensus 38 ~gadLvvfPE~~ltGy~~~~~~~~~~a~~~~~~~~~~l~~lA~~~~i~i~~g-~~e~~~------------------~~~ 98 (291)
T cd07565 38 PGMDLIVFPEYSTQGLMYDKWTMDETACTVPGPETDIFAEACKEAKVWGVFS-IMERNP------------------DHG 98 (291)
T ss_pred CCCeEEEeCCcccccCCCCcchhhhhccCCCChhHHHHHHHHHHCCeEEEEE-eeeecC------------------CCC
Confidence 699999998443 10 0 11233567788999988752 211100 000
Q ss_pred ccccceeEEECCCCceee
Q 031270 74 VVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 74 ~~~~G~S~Iv~P~G~~la 91 (162)
..++-.+.+++|+|+++.
T Consensus 99 ~~~yNsa~~i~~~G~i~~ 116 (291)
T cd07565 99 KNPYNTAIIIDDQGEIVL 116 (291)
T ss_pred CceEEEEEEECCCCcEEE
Confidence 124466778899998764
No 71
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=58.34 E-value=63 Score=26.01 Aligned_cols=40 Identities=10% Similarity=0.138 Sum_probs=27.0
Q ss_pred HHHHhCCCcEEEEeCCC--Ch-----------hhHHHHHHHHhHhcCceEEEc
Q 031270 6 TALYGKGIEIYCAPTAD--SR-----------DVWQASMTHIALEGGCFVLSA 45 (162)
Q Consensus 6 r~la~~Gaei~v~p~a~--~~-----------~~w~~~~~arA~En~~fVv~a 45 (162)
+..+.+|++|+|-|=.+ +. ..+...++..|.+++++++.-
T Consensus 25 ~~A~~~gadlvvfPE~~ltG~~~~~~~~~~~~~~~~~~l~~lA~~~~i~iv~G 77 (279)
T cd07579 25 AEAKATGAELVVFPELALTGLDDPASEAESDTGPAVSALRRLARRLRLYLVAG 77 (279)
T ss_pred HHHHHCCCCEEEeCCccccCCCChHHhcccCCCHHHHHHHHHHHHcCeEEEEe
Confidence 34567899999998543 11 123344677888999988864
No 72
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=56.84 E-value=57 Score=25.58 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=25.6
Q ss_pred HHHHhCCCcEEEEeCCC--Ch---h-------------hHHHHHHHHhHhcCceEEEcC
Q 031270 6 TALYGKGIEIYCAPTAD--SR---D-------------VWQASMTHIALEGGCFVLSAN 46 (162)
Q Consensus 6 r~la~~Gaei~v~p~a~--~~---~-------------~w~~~~~arA~En~~fVv~aN 46 (162)
+..+.+|++|+|.|=.+ +. . .....++.-|.+++++++.-.
T Consensus 27 ~~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G~ 85 (258)
T cd07578 27 EEAARAGARLIVTPEMATTGYCWYDRAEIAPFVEPIPGPTTARFAELAREHDCYIVVGL 85 (258)
T ss_pred HHHHhCCCCEEEcccccccCCCcCCHHHhhhhcccCCCHHHHHHHHHHHHcCcEEEEec
Confidence 34567899999998543 10 0 012234566788999887543
No 73
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=54.49 E-value=68 Score=25.09 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=35.2
Q ss_pred HHhCCCcEEEEeCCCC----h----------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCC
Q 031270 8 LYGKGIEIYCAPTADS----R----------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDS 73 (162)
Q Consensus 8 la~~Gaei~v~p~a~~----~----------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~ 73 (162)
++. |++++|-|=.+. . ......++..|.++++.++. ...-.+ +
T Consensus 29 a~~-gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~l~~la~~~~i~i~~-~~~~~~---------------------~ 85 (252)
T cd07575 29 LKE-KTDLIVLPEMFTTGFSMNAEALAEPMNGPTLQWMKAQAKKKGAAITG-SLIIKE---------------------G 85 (252)
T ss_pred hhc-CCCEEEeCCcCcCCCCccHHHhhcccCChHHHHHHHHHHHCCeEEEE-EEEEcc---------------------C
Confidence 344 999999985431 0 11223457788999987763 221111 1
Q ss_pred ccccceeEEECCCCcee
Q 031270 74 VVCAGGSVIISPSGTVL 90 (162)
Q Consensus 74 ~~~~G~S~Iv~P~G~~l 90 (162)
..++-.+++++|+|.+.
T Consensus 86 ~~~yNs~~~i~~~G~i~ 102 (252)
T cd07575 86 GKYYNRLYFVTPDGEVY 102 (252)
T ss_pred CceEEEEEEECCCCCEE
Confidence 12456677788888754
No 74
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.77 E-value=39 Score=22.67 Aligned_cols=42 Identities=10% Similarity=-0.142 Sum_probs=30.1
Q ss_pred HhCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEcCcccc
Q 031270 9 YGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCR 50 (162)
Q Consensus 9 a~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~aN~~g~ 50 (162)
..+.+|++++++..-...-...++..|..++..+++++..|-
T Consensus 45 ~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 45 KIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred hcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 345678888877764333334468889999999999997664
No 75
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=46.57 E-value=62 Score=26.61 Aligned_cols=50 Identities=14% Similarity=-0.055 Sum_probs=38.3
Q ss_pred cHHHHHHHhCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEcCccccc
Q 031270 2 PLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRR 51 (162)
Q Consensus 2 P~~~r~la~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~aN~~g~~ 51 (162)
|.+.+.+..+|+...++.++.-.+.-+..+...|.++++-++..|..|--
T Consensus 77 ~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~girilGPNc~Gii 126 (286)
T TIGR01019 77 ADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTRLIGPNCPGII 126 (286)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCceEE
Confidence 55677888899988888766533333455778899999999999999863
No 76
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=41.21 E-value=83 Score=25.94 Aligned_cols=49 Identities=8% Similarity=-0.111 Sum_probs=37.2
Q ss_pred cHHHHHHHhCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEcCcccc
Q 031270 2 PLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCR 50 (162)
Q Consensus 2 P~~~r~la~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~aN~~g~ 50 (162)
|.+.+.+..+|....++.++.-...-...+...|.++++-++..|..|-
T Consensus 79 ~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~Gi 127 (291)
T PRK05678 79 ADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPGI 127 (291)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCcc
Confidence 5667888899999888776642222223678889999999999999986
No 77
>PLN02673 quinolinate synthetase A
Probab=40.59 E-value=7.7 Score=35.79 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=42.1
Q ss_pred eEEECCCCceeecCCCCCccEEEEEechHHHHHH---Hh--hCCcCC-CCCCccceeeeecCcCCCceEEcCCCc
Q 031270 80 SVIISPSGTVLAGPNYEGEALISADLDLGEIARE---KF--AFDVVG-HYSRPEVLSLVVRDHPATPVTYTSASV 148 (162)
Q Consensus 80 S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~---R~--~~~~~~-~y~Rpd~~~~~~~~~~~~~~~~~~~~~ 148 (162)
|.|+.+|| +-++....+..--|-+=|.+.+.+. ++ +.-+++ +|.+||+..+.-....++|-.+.||+.
T Consensus 230 ~~~~~~~~-~~~~~~~~~~~a~~l~p~~~~v~eI~~lkkek~avILAH~Yq~pEVQ~iADa~~~~~p~~~vGDSL 303 (724)
T PLN02673 230 SLVLTADG-IEAKGSFAQAQARYLFPEESKVEELVNVLKEKKIGVVAHFYMDPEVQGVLTAAQKHWPHISISDSL 303 (724)
T ss_pred eeEecccc-cccccchHHhhhhhcCCCHHHHHHHHHHHHhcCcEEEEecCCCHHHHHHhhhhhcccCCCeeccHH
Confidence 89999999 5555543333334444454443332 22 233455 489999977766566788888887764
No 78
>PF09857 DUF2084: Uncharacterized protein conserved in bacteria (DUF2084); InterPro: IPR018654 This domain is found in various hypothetical bacterial proteins that have no known function.
Probab=36.41 E-value=40 Score=22.68 Aligned_cols=38 Identities=21% Similarity=0.126 Sum_probs=30.0
Q ss_pred eEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhC
Q 031270 80 SVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAF 117 (162)
Q Consensus 80 S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~ 117 (162)
-..-|.+|++..-.-...||+++++++++..++.|..-
T Consensus 21 ~~~rd~~gri~~v~C~TReG~~l~dctl~vF~kLK~kr 58 (85)
T PF09857_consen 21 RHERDDSGRITAVECYTREGWLLSDCTLAVFRKLKRKR 58 (85)
T ss_pred EEEECCCCCEEEEEEEccCCeeeCCCCHHHHHHHhhcc
Confidence 44567889887554468999999999999998887643
No 79
>PF10492 Nrf1_activ_bdg: Nrf1 activator activation site binding domain; InterPro: IPR019526 Nuclear respiratory factor-1 (Nrf-1) is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is an activation domain at 303-469, the most conserved part of which is this domain 446-469. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=35.55 E-value=20 Score=24.00 Aligned_cols=13 Identities=38% Similarity=1.073 Sum_probs=10.8
Q ss_pred cccCceeeeeeec
Q 031270 149 KTEGGLCITPVTI 161 (162)
Q Consensus 149 ~~~~~~~~~~~~~ 161 (162)
...|+.|++|+.+
T Consensus 23 ~~dgtvCitP~QV 35 (82)
T PF10492_consen 23 TSDGTVCITPMQV 35 (82)
T ss_pred cCCCCEeccceEE
Confidence 4689999999865
No 80
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=35.45 E-value=31 Score=21.17 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=11.3
Q ss_pred cceeEEECCCCceeecC
Q 031270 77 AGGSVIISPSGTVLAGP 93 (162)
Q Consensus 77 ~G~S~Iv~P~G~~la~~ 93 (162)
.|-..+++|+|++|+-.
T Consensus 26 ~g~~aa~~pdG~lvAL~ 42 (56)
T PF09142_consen 26 PGPVAAFAPDGRLVALL 42 (56)
T ss_dssp -S-EEEE-TTS-EEEEE
T ss_pred CceEEEECCCCcEEEEE
Confidence 36688999999998876
No 81
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=32.21 E-value=86 Score=18.46 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=21.0
Q ss_pred ceeEEECCCCceeecCCCCCccEEEEEe
Q 031270 78 GGSVIISPSGTVLAGPNYEGEALISADL 105 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~~~~E~iv~adi 105 (162)
..++.|+|+|.+..=.......+.+.+|
T Consensus 5 ~~~~~I~~dG~v~pC~~~~~~~~~~Gni 32 (64)
T PF13186_consen 5 WNSLYIDPDGDVYPCCHDYDPEFKIGNI 32 (64)
T ss_pred CeEEEEeeCccEEeCCCCCCCCeEEeec
Confidence 5688999999987543235677888888
No 82
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=31.38 E-value=1.7e+02 Score=21.05 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=12.5
Q ss_pred cceeEEECCCCceeec
Q 031270 77 AGGSVIISPSGTVLAG 92 (162)
Q Consensus 77 ~G~S~Iv~P~G~~la~ 92 (162)
.-..+++|++|+++..
T Consensus 139 ~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 139 LPTTFLIDKDGKVVKV 154 (173)
T ss_pred cCeEEEECCCCcEEEE
Confidence 3457899999998754
No 83
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=31.01 E-value=1e+02 Score=26.24 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=44.3
Q ss_pred ceeEEECCCCceeecCCCCCccEEEEEechH---HHHHHHhhCCcCCCCCCccceeeeecCcCCCceEEcC
Q 031270 78 GGSVIISPSGTVLAGPNYEGEALISADLDLG---EIAREKFAFDVVGHYSRPEVLSLVVRDHPATPVTYTS 145 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~---~i~~~R~~~~~~~~y~Rpd~~~~~~~~~~~~~~~~~~ 145 (162)
-.-+.+.|+|+.|+.+. +..++-+.|+-+. ..+++++.+.+-||. --+..+-+.....++++.+.
T Consensus 231 n~~aavSP~GRFia~~g-FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~--saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 231 NYDAAVSPDGRFIAVSG-FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ--SAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred ccceeeCCCCcEEEEec-CCCCceEEEEEeccCcchhhhhhhheeccch--hheeeeeeCCCcceeEEEec
Confidence 34568999999999985 7788888887543 577778888888873 34455555555555554443
No 84
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=27.60 E-value=1e+02 Score=18.87 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=18.5
Q ss_pred ceeEEECCCCceeecCC----CCCccEEEEEec
Q 031270 78 GGSVIISPSGTVLAGPN----YEGEALISADLD 106 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~----~~~E~iv~adiD 106 (162)
+.++.+-|||++|.... ........+.++
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln 35 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLN 35 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEEC
Confidence 56888999999887653 123445555544
No 85
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=26.54 E-value=23 Score=26.77 Aligned_cols=58 Identities=21% Similarity=0.358 Sum_probs=32.8
Q ss_pred ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCC---CCCccceeeeecCcCC
Q 031270 78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGH---YSRPEVLSLVVRDHPA 138 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~---y~Rpd~~~~~~~~~~~ 138 (162)
++.+++.|.|....+. ..++++..|+|-+.....|-.....-| |+|||+ .-.++.++.
T Consensus 30 ~~~~lItpsg~~~~~l--~~~dlv~vd~~g~~~~~~~ps~E~~lH~~iy~~~dv-~aVvH~H~~ 90 (181)
T PRK08660 30 GDGLLITRTGSMLDEI--TEGDVIEVGIDDDGSVDPLASSETPVHRAIYRRTSA-KAIVHAHPP 90 (181)
T ss_pred CCEEEEeCCCCCcccC--ChhHEEEEcCCCCccCCCCCCccHHHHHHHHcCCCC-CEEEEeCCh
Confidence 4578899999776665 468888888874332211211112222 677774 444444443
No 86
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=25.73 E-value=1.8e+02 Score=25.32 Aligned_cols=79 Identities=22% Similarity=0.231 Sum_probs=44.3
Q ss_pred hhHHHHHH----HHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccccce-----e---EEE-CCCCceee
Q 031270 25 DVWQASMT----HIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGG-----S---VII-SPSGTVLA 91 (162)
Q Consensus 25 ~~w~~~~~----arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~G~-----S---~Iv-~P~G~~la 91 (162)
+.|-..++ -.|.|+++|||+|+..-+ ||.+...+. -.-.|.|. | .-. +|.|-.+.
T Consensus 119 P~f~E~mq~kYhd~A~ekGVYIVsaCGfDS---IPaDlGv~f---------~~k~fdg~ln~VEsfl~Lh~~gp~G~sln 186 (423)
T KOG2733|consen 119 PQFMERMQLKYHDLAKEKGVYIVSACGFDS---IPADLGVMF---------LRKNFDGVLNHVESFLQLHSKGPSGYSLN 186 (423)
T ss_pred HHHHHHHHHHHHHHHHhcCeEEEeecccCC---CCccceeee---------ehhhccccHHHHHHHHhhhccCCcccccc
Confidence 55644443 469999999999987654 554321110 01123341 1 111 77775332
Q ss_pred cCCCCCccEEEEEechHHHHHHHhhC
Q 031270 92 GPNYEGEALISADLDLGEIAREKFAF 117 (162)
Q Consensus 92 ~~~~~~E~iv~adiDl~~i~~~R~~~ 117 (162)
.. .=|.++++--+.++++..|...
T Consensus 187 ~g--TweSallg~~n~~~l~~lR~~~ 210 (423)
T KOG2733|consen 187 TG--TWESALLGVANASELKALRKSI 210 (423)
T ss_pred cc--cHHHHHHHhcChHHHHHHHhhh
Confidence 22 3355667777777888877654
No 87
>PRK13687 hypothetical protein; Provisional
Probab=24.19 E-value=71 Score=21.49 Aligned_cols=37 Identities=24% Similarity=0.175 Sum_probs=29.0
Q ss_pred eEEECCCCceeecCCCCCccEEEEEechHHHHHHHhh
Q 031270 80 SVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFA 116 (162)
Q Consensus 80 S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~ 116 (162)
-..-|.+|++..-.=...||+++.+++++..++.|..
T Consensus 21 ~~~rd~~gri~~v~C~TReG~~l~dctl~vF~kLK~k 57 (85)
T PRK13687 21 EHERDDSGRITAVECYTREGWLLADCTLAVFKKLKRK 57 (85)
T ss_pred EEEECCCCcEEEEEEEccCCcccCCCCHHHHHHHHhh
Confidence 4456788987754436899999999999998887764
No 88
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=23.38 E-value=1.9e+02 Score=19.48 Aligned_cols=44 Identities=16% Similarity=0.076 Sum_probs=25.8
Q ss_pred cHHHHHHHhCCCcEEEEeCCCCh-hhHHHHHHHHhHhcCceEEEc
Q 031270 2 PLLRTALYGKGIEIYCAPTADSR-DVWQASMTHIALEGGCFVLSA 45 (162)
Q Consensus 2 P~~~r~la~~Gaei~v~p~a~~~-~~w~~~~~arA~En~~fVv~a 45 (162)
|.+...+.....++++.-..... ..-...+|..|++++++++.+
T Consensus 57 ~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 57 PNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFTT 101 (110)
T ss_pred hhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEec
Confidence 34455555566666666322211 112345788999999998854
No 89
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=23.21 E-value=2.1e+02 Score=22.59 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEcCc
Q 031270 3 LLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQ 47 (162)
Q Consensus 3 ~~~r~la~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~aN~ 47 (162)
++...|..+|+|+|+... .... ...-|.|++.|++..+.
T Consensus 170 ~~a~~l~~~G~DvI~~~~-~~~g-----~~~aa~~~g~~~IG~d~ 208 (258)
T cd06353 170 EAALALIDQGADVIYQHT-DSPG-----VIQAAEEKGVYAIGYVS 208 (258)
T ss_pred HHHHHHHHCCCcEEEecC-CChH-----HHHHHHHhCCEEEeecc
Confidence 456788899999888876 3221 22344578899988874
No 90
>PHA01633 putative glycosyl transferase group 1
Probab=22.99 E-value=2.1e+02 Score=23.99 Aligned_cols=40 Identities=8% Similarity=0.032 Sum_probs=27.6
Q ss_pred HhCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEcCccccc
Q 031270 9 YGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRR 51 (162)
Q Consensus 9 a~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~aN~~g~~ 51 (162)
..+++|+++.||-+ +.| -+...-|+..++.||++|..|-.
T Consensus 220 ~y~~aDifV~PS~~--Egf-GlvlLEAMA~G~PVVas~~~~l~ 259 (335)
T PHA01633 220 FYGAMDFTIVPSGT--EGF-GMPVLESMAMGTPVIHQLMPPLD 259 (335)
T ss_pred HHHhCCEEEECCcc--ccC-CHHHHHHHHcCCCEEEccCCCce
Confidence 45578999998865 222 12345677889999999886653
No 91
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=22.40 E-value=2.6e+02 Score=23.21 Aligned_cols=48 Identities=15% Similarity=0.046 Sum_probs=31.2
Q ss_pred cHHHHHHHhCCCcEEEEeCCC-C--hhhHHHHHHHHhHhcCceEEEcCcccc
Q 031270 2 PLLRTALYGKGIEIYCAPTAD-S--RDVWQASMTHIALEGGCFVLSANQFCR 50 (162)
Q Consensus 2 P~~~r~la~~Gaei~v~p~a~-~--~~~w~~~~~arA~En~~fVv~aN~~g~ 50 (162)
+++.+++...|++=+|.-... + ...|...++ +|.++++.||.+.|+..
T Consensus 223 ~~~l~~~~~~g~~GiVl~~~G~Gn~p~~~~~~l~-~a~~~gi~VV~~Sq~~~ 273 (323)
T cd00411 223 AEAVRAFLRAGYKGIVLAGYGAGNVPTDLIDELE-EAAERGVVVVNSTQCEE 273 (323)
T ss_pred HHHHHHHHhCCCCEEEEEeECCCCCCHHHHHHHH-HHHHCCCEEEEecCCCC
Confidence 345566667787766664332 1 233444443 78899999999999854
No 92
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=21.88 E-value=78 Score=22.88 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=26.7
Q ss_pred eEEECCCCceeecCC--CCCccEEEEEechHHHHHHHh
Q 031270 80 SVIISPSGTVLAGPN--YEGEALISADLDLGEIAREKF 115 (162)
Q Consensus 80 S~Iv~P~G~~la~~~--~~~E~iv~adiDl~~i~~~R~ 115 (162)
.++++|+|.++.-+. ..+...+.||++|=.-...+.
T Consensus 12 A~lv~~~G~l~daa~NtNa~N~~LHAE~NLl~p~~~~~ 49 (136)
T PF14439_consen 12 AALVSPDGELVDAAVNTNADNKMLHAEWNLLMPWLWRE 49 (136)
T ss_pred EEEECCCCcEEEeeeccCCccceeehhhhhhhHHHHhh
Confidence 689999999887663 356789999998755444444
No 93
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=21.75 E-value=1.3e+02 Score=17.39 Aligned_cols=16 Identities=50% Similarity=0.675 Sum_probs=9.5
Q ss_pred ceeEEECCCCceeecC
Q 031270 78 GGSVIISPSGTVLAGP 93 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~ 93 (162)
|-|-|+-|||+.+.-+
T Consensus 1 G~SGii~~dG~~~q~~ 16 (40)
T PF08140_consen 1 GPSGIITPDGTNVQFP 16 (40)
T ss_pred CCCceECCCCCEEECC
Confidence 4466777777654433
No 94
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=21.65 E-value=2.4e+02 Score=23.42 Aligned_cols=50 Identities=4% Similarity=-0.091 Sum_probs=35.7
Q ss_pred cHHHHHHHhCCCcEEEEeCCC-ChhhHHHHHHHHhHhcCceEEEcCccccc
Q 031270 2 PLLRTALYGKGIEIYCAPTAD-SRDVWQASMTHIALEGGCFVLSANQFCRR 51 (162)
Q Consensus 2 P~~~r~la~~Gaei~v~p~a~-~~~~w~~~~~arA~En~~fVv~aN~~g~~ 51 (162)
|.+.+.+..+|...+++.+.. +...-+.+....|.++++-|+..|..|--
T Consensus 83 ~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~Gii 133 (300)
T PLN00125 83 AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGII 133 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCceee
Confidence 455677888999977776553 32223455556788999999999999863
No 95
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=20.54 E-value=1.8e+02 Score=20.66 Aligned_cols=36 Identities=11% Similarity=-0.009 Sum_probs=22.8
Q ss_pred hCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEc
Q 031270 10 GKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSA 45 (162)
Q Consensus 10 ~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~a 45 (162)
.+--|++++.++++......-+-..|.+.++.|+..
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 345678888888876555555566777999998864
No 96
>PF00993 MHC_II_alpha: Class II histocompatibility antigen, alpha domain; InterPro: IPR001003 Major Histocompatibility Complex (MHC) glycoproteins are heterodimeric cell surface receptors that function to present antigen peptide fragments to T cells responsible for cell-mediated immune responses. MHC molecules can be subdivided into two groups on the basis of structure and function: class I molecules present intracellular antigen peptide fragments (~10 amino acids) on the surface of the host cells to cytotoxic T cells; class II molecules present exogenously derived antigenic peptides (~15 amino acids) to helper T cells. MHC class I and II molecules are assembled and loaded with their peptide ligands via different mechanisms. However, both present peptide fragments rather than entire proteins to T cells, and are required to mount an immune response. Class II MHC glycoproteins are expressed on the surface of antigen-presenting cells (APC), including macrophages, dendritic cells and B cells. MHC II proteins present peptide antigens that originate extracellularly from foreign bodies such as bacteria. Proteins from the pathogen are degraded into peptide fragments within the APC, which sequesters these fragments into the endosome so they can bind to MHC class II proteins, before being transported to the cell surface. MHC class II receptors display antigens for recognition by helper T cells (stimulate development of B cell clones) and inflammatory T cells (cause the release of lymphokines that attract other cells to site of infection) []. MHC class II molecules are comprised of two membrane-spanning chains, alpha and beta, of similar size. Both chains consist of two globular domains (N- and C-terminal), and a transmembrane segment to anchor them to the membrane []. A groove in the structure acts as the peptide-binding site. This entry represents the N-terminal domain (also called alpha-1 domain) of the alpha chain. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane, 0042613 MHC class II protein complex; PDB: 3LQZ_A 2ICW_D 1SJH_A 1KG0_A 1D6E_A 1D5M_A 1ZGL_G 1SJE_A 1J8H_A 2IAM_A ....
Probab=20.14 E-value=45 Score=22.15 Aligned_cols=29 Identities=34% Similarity=0.470 Sum_probs=22.5
Q ss_pred cccceeEEECCCCceeecCCCCCccEEEEEechH
Q 031270 75 VCAGGSVIISPSGTVLAGPNYEGEALISADLDLG 108 (162)
Q Consensus 75 ~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~ 108 (162)
.++|.| +|+|+.+.+. ++|++.|+|++..
T Consensus 8 ~~~~~s---~~~ge~~~~~--DgEE~~y~Df~kk 36 (82)
T PF00993_consen 8 IFYQCS---DPSGEYMYGF--DGEELFYADFKKK 36 (82)
T ss_dssp EEEEET---TTEEEEEEEE--TTEEEEEEETTTT
T ss_pred EEEeCC---CCCcceeecc--CCceEEEEeccCC
Confidence 455555 8999988887 6889999999854
Done!