Query 031270
Match_columns 162
No_of_seqs 202 out of 1347
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 18:44:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8k_A Hydrolase, carbon-nitro 99.9 2.8E-25 9.6E-30 179.1 11.5 108 1-130 171-281 (281)
2 2w1v_A Nitrilase-2, nitrilase 99.9 2.4E-24 8.1E-29 172.6 13.5 113 1-134 158-274 (276)
3 3ivz_A Nitrilase; alpha-beta s 99.9 1.2E-25 4.2E-30 179.0 5.8 109 1-130 151-261 (262)
4 1f89_A 32.5 kDa protein YLR351 99.9 4.4E-24 1.5E-28 172.1 12.7 111 1-132 174-288 (291)
5 3hkx_A Amidase; alpha-beta-BET 99.9 3.3E-25 1.1E-29 178.8 5.7 109 1-131 170-281 (283)
6 1ems_A Nitfhit, NIT-fragIle hi 99.9 5.4E-24 1.8E-28 180.9 11.5 115 1-136 174-292 (440)
7 2vhh_A CG3027-PA; hydrolase; 2 99.9 3.6E-24 1.2E-28 181.0 6.1 130 1-135 239-372 (405)
8 1uf5_A N-carbamyl-D-amino acid 99.9 9E-24 3.1E-28 170.8 7.6 112 1-133 176-301 (303)
9 2e11_A Hydrolase; dimethylarse 99.9 1.4E-23 4.9E-28 167.1 7.4 108 2-130 149-265 (266)
10 2dyu_A Formamidase; AMIF, CEK, 99.9 3.7E-21 1.3E-25 158.6 11.8 102 1-122 171-275 (334)
11 2uxy_A Aliphatic amidase; nitr 99.8 1.3E-20 4.3E-25 155.9 10.8 101 1-121 171-274 (341)
12 4f4h_A Glutamine dependent NAD 99.7 3.8E-17 1.3E-21 143.2 8.6 88 1-108 174-266 (565)
13 3n05_A NH(3)-dependent NAD(+) 99.7 3.2E-17 1.1E-21 144.2 7.3 89 2-110 170-263 (590)
14 3ilv_A Glutamine-dependent NAD 99.6 3.2E-16 1.1E-20 138.9 6.9 97 2-118 171-276 (634)
15 3sdb_A Glutamine-dependent NAD 99.5 7.6E-15 2.6E-19 131.1 7.4 101 2-122 183-292 (680)
16 3p8k_A Hydrolase, carbon-nitro 87.0 1.3 4.6E-05 34.5 6.1 65 6-91 47-126 (281)
17 3hkx_A Amidase; alpha-beta-BET 86.0 4.3 0.00015 31.5 8.6 66 5-91 46-127 (283)
18 2w1v_A Nitrilase-2, nitrilase 80.8 4.1 0.00014 31.3 6.4 65 6-91 29-108 (276)
19 1f89_A 32.5 kDa protein YLR351 76.7 7.9 0.00027 29.8 7.0 64 9-91 42-124 (291)
20 1ems_A Nitfhit, NIT-fragIle hi 76.5 7.5 0.00026 32.1 7.2 70 5-92 39-124 (440)
21 2vhh_A CG3027-PA; hydrolase; 2 71.5 15 0.0005 30.3 7.7 67 6-91 106-193 (405)
22 3ivz_A Nitrilase; alpha-beta s 66.8 12 0.00042 28.4 5.9 63 6-91 28-109 (262)
23 2dyu_A Formamidase; AMIF, CEK, 66.2 19 0.00064 28.6 7.1 62 11-91 51-129 (334)
24 1uf5_A N-carbamyl-D-amino acid 59.2 16 0.00056 28.1 5.4 68 6-91 32-122 (303)
25 2e11_A Hydrolase; dimethylarse 56.3 20 0.00069 27.1 5.4 59 10-90 33-105 (266)
26 2uxy_A Aliphatic amidase; nitr 56.3 36 0.0012 27.0 7.1 64 11-91 50-130 (341)
27 1oi7_A Succinyl-COA synthetase 30.6 1E+02 0.0035 23.9 5.8 49 2-50 78-126 (288)
28 3ewl_A Uncharacterized conserv 30.6 65 0.0022 20.9 4.2 15 78-92 111-125 (142)
29 2yv1_A Succinyl-COA ligase [AD 30.5 89 0.003 24.3 5.4 48 2-50 84-132 (294)
30 2yv2_A Succinyl-COA synthetase 30.1 93 0.0032 24.3 5.5 48 2-50 85-133 (297)
31 2nu8_A Succinyl-COA ligase [AD 28.3 84 0.0029 24.3 4.9 49 2-50 78-126 (288)
32 3kh7_A Thiol:disulfide interch 25.6 1E+02 0.0035 21.3 4.6 15 79-93 135-149 (176)
33 2v2f_A Penicillin binding prot 24.5 36 0.0012 16.4 1.4 17 78-94 5-21 (26)
34 4fo5_A Thioredoxin-like protei 23.4 1.5E+02 0.0051 19.2 5.0 15 79-93 116-130 (143)
35 3mwd_B ATP-citrate synthase; A 22.2 1E+02 0.0036 24.7 4.5 46 5-50 97-142 (334)
36 3eur_A Uncharacterized protein 21.9 1.7E+02 0.0057 18.9 6.2 15 79-93 116-130 (142)
No 1
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=99.92 E-value=2.8e-25 Score=179.06 Aligned_cols=108 Identities=20% Similarity=0.322 Sum_probs=100.4
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA 77 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 77 (162)
.|++.|.++.+|++|+++|++|+ ..+|+.++++||+||+||||+||++|.+ ++..|+
T Consensus 171 fpe~~r~~~~~Gadli~~psa~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~--------------------~~~~~~ 230 (281)
T 3p8k_A 171 FPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFD--------------------GNTEYA 230 (281)
T ss_dssp CTHHHHHHHHTTCCEEEEEECCBGGGHHHHHHHHHHHHHHHTSEEEEEECEEEC--------------------SSCEEE
T ss_pred CcHHHHHHHHCCCCEEEECCCCCCccHHHHHHHHHHHHHHcCCEEEEEccCcCC--------------------CCcEEe
Confidence 48999999999999999999996 4689999999999999999999999985 357899
Q ss_pred ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCcccee
Q 031270 78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLS 130 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~ 130 (162)
|+|+|++|+|+++++ ..++|+++++|||++.+++.|..++++.| ||||+|+
T Consensus 231 G~S~ii~p~G~vl~~-~~~~e~~l~~~id~~~~~~~R~~~p~~~~-rr~~lY~ 281 (281)
T 3p8k_A 231 GHSIVINPNGDLVGE-LNESADILTVDLNLNEVEQQRENIPVFKS-IKLDLYK 281 (281)
T ss_dssp CCCEEECTTSCEEEE-CCSSCEEEEEEEETHHHHHHHHHSCGGGT-CCTTTCC
T ss_pred eeEEEECCCCCEEEe-cCCCCeEEEEEEcHHHHHHHHHhCcchhh-cChhhcC
Confidence 999999999999999 56899999999999999999999999998 9999995
No 2
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=99.92 E-value=2.4e-24 Score=172.63 Aligned_cols=113 Identities=20% Similarity=0.334 Sum_probs=102.3
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC 76 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~ 76 (162)
.|++.|.++.+|++|+++|++|+ ..+|..++++||+||+|||+.||++|.++ .+..|
T Consensus 158 fpe~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~-------------------~~~~~ 218 (276)
T 2w1v_A 158 FAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRARAVDNQVYVATASPARDDK-------------------ASYVA 218 (276)
T ss_dssp CHHHHHHHHHTTEEEEEEECCCCTTHHHHHHHHHHHHHHHHHTCEEEEECCCCCTT-------------------SSSCC
T ss_pred cHHHHHHHHHcCCCEEEECCcCCCcCCHHHHHHHHHHHHHHcCcEEEEecccccCC-------------------CCcee
Confidence 48999999999999999999985 36799999999999999999999999752 35678
Q ss_pred cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeec
Q 031270 77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVR 134 (162)
Q Consensus 77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~ 134 (162)
.|+|+|++|+|++++++.. +|++++++||++.+++.|..+|+++| +|||+|.+..+
T Consensus 219 ~G~S~ii~p~G~v~~~~~~-~e~~l~~~id~~~~~~~R~~~~~~~~-~r~~~y~~~~~ 274 (276)
T 2w1v_A 219 WGHSTVVDPWGQVLTKAGT-EETILYSDIDLKKLAEIRQQIPILKQ-KRADLYTVESK 274 (276)
T ss_dssp CCCCEEECTTSCEEEECCS-SSEEEEEEEEHHHHHHHHHHSCGGGS-CCTTTEEEEEC
T ss_pred eeEeEEECCCCCEeEEcCC-CCeEEEEEEcHHHHHHHHHhCChhHh-CCHHHhhcccc
Confidence 9999999999999999875 99999999999999999999999999 79999997643
No 3
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=99.92 E-value=1.2e-25 Score=179.04 Aligned_cols=109 Identities=22% Similarity=0.269 Sum_probs=101.1
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccccee
Q 031270 1 MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGS 80 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~G~S 80 (162)
.|++.|.++.+|++|+++|++|+.++|..++++||+||+|||++||++|.+ ++..|.|+|
T Consensus 151 fpe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~--------------------~~~~~~G~S 210 (262)
T 3ivz_A 151 FPESARTLALKGADVIAHPANLVMPYAPRAMPIRALENKVYTVTADRVGEE--------------------RGLKFIGKS 210 (262)
T ss_dssp SHHHHHHHHHTTCSEEEEEECCCSSCHHHHHHHHHHHHTCEEEEEECCSEE--------------------TTEECCCCC
T ss_pred chHHHHHHHHCCCCEEEEcCCCCchHHHHHHHHHHHhcCcEEEEECCCCcC--------------------CCceEeeeE
Confidence 489999999999999999999987799999999999999999999999985 356799999
Q ss_pred EEECCCCceeecCCCCCccEEEEEechHHHHHHHhh--CCcCCCCCCcccee
Q 031270 81 VIISPSGTVLAGPNYEGEALISADLDLGEIAREKFA--FDVVGHYSRPEVLS 130 (162)
Q Consensus 81 ~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~--~~~~~~y~Rpd~~~ 130 (162)
+|++|+|+++++++.++++++++|||++.+++.|.. ++++.| ||||+|.
T Consensus 211 ~ii~p~G~il~~~~~~~~~~~~~~id~~~~~~~R~~~~~p~l~~-rr~~lY~ 261 (262)
T 3ivz_A 211 LIASPKAEVLSMASETEEEVGVAEIDLSLVRNKRINDLNDIFKD-RREEYYF 261 (262)
T ss_dssp EEECTTSCEEEECCSSCCEEEEEECCHHHHHCCEEETTEEHHHH-CCGGGSC
T ss_pred EEECCCCCEeecCCCCCceEEEEEEcHHHHHHHhhcccCchhhh-cCHhhhC
Confidence 999999999999987788899999999999999987 899988 9999996
No 4
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=99.91 E-value=4.4e-24 Score=172.06 Aligned_cols=111 Identities=25% Similarity=0.304 Sum_probs=96.2
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC 76 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~ 76 (162)
.|++.|.++.+|++|+++|++|+ ..+|..++++||+||+|||+.||++|.++ ++..|
T Consensus 174 fpe~~r~l~~~Ga~ll~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~-------------------~~~~~ 234 (291)
T 1f89_A 174 FPELAMLSARKGAFAMIYPSAFNTVTGPLHWHLLARSRAVDNQVYVMLCSPARNLQ-------------------SSYHA 234 (291)
T ss_dssp CHHHHHHHHHTTEEEEEEECCCBTTHHHHHHHHHHHHHHHHHTSEEEEECCCCCTT-------------------SSSCB
T ss_pred chHHHHHHHhhCCCEEEECCcCCCCCcHHHHHHHHHHHHHHcCCEEEEecCccCCC-------------------CCCee
Confidence 48999999999999999999985 36799999999999999999999999641 45789
Q ss_pred cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeee
Q 031270 77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLV 132 (162)
Q Consensus 77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~ 132 (162)
+|+|+|++|+|+++++++ .+|++++++||++.+++.|..+|+++| +|||+|..+
T Consensus 235 ~G~S~ii~p~G~vl~~~~-~~e~~l~~~id~~~~~~~R~~~~~~~~-~r~~~y~~~ 288 (291)
T 1f89_A 235 YGHSIVVDPRGKIVAEAG-EGEEIIYAELDPEVIESFRQAVPLTKQ-RRFDVYSDV 288 (291)
T ss_dssp CCCCEEECTTSCEEEECC-SSSEEEEEEECHHHHHHHHHHSCCCCC-CCC------
T ss_pred eeEEEEECCCCCEEEecC-CCCeEEEEEECHHHHHHHHHhCChhHh-CChhhhhhh
Confidence 999999999999999986 489999999999999999999999998 899999865
No 5
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=99.91 E-value=3.3e-25 Score=178.82 Aligned_cols=109 Identities=24% Similarity=0.270 Sum_probs=91.5
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA 77 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 77 (162)
.|++.|.++.+|++|+++|++|+ ..+|..++++||+||++||+.||++|.+ ++..|.
T Consensus 170 fpe~~r~l~~~Ga~li~~ps~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~--------------------~~~~~~ 229 (283)
T 3hkx_A 170 FPEMVRAAAARGAQLVLVPTALAGDETSVPGILLPARAVENGITLAYANHCGPE--------------------GGLVFD 229 (283)
T ss_dssp SHHHHHHHHHTTCSEEEEECCCBSCCTHHHHTHHHHHHHHHTCEEEEECBEEEE--------------------TTEEEE
T ss_pred CHHHHHHHHHCCCCEEEECCCCCCcccHHHHHHHHHHHHHhCCEEEEEccccCC--------------------CCeEEe
Confidence 48999999999999999999984 3689999999999999999999999985 467899
Q ss_pred ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceee
Q 031270 78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSL 131 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~ 131 (162)
|+|+|++|+|+++++++ ++|+++++|||++.+++.|..++++.| ||||+|..
T Consensus 230 G~S~ii~p~G~vl~~~~-~~e~~l~a~id~~~~~~~R~~~~~~~~-rr~~ly~~ 281 (283)
T 3hkx_A 230 GGSVVVGPAGQPLGELG-VEPGLLVVDLPDQSQDAGSDSADYLQD-RRAELHRN 281 (283)
T ss_dssp CCCEEECTTSCEEEECC-SSCEEEEEEEEC----------CHHHH-SCHHHHHH
T ss_pred eEEEEECCCCCEEEecC-CCCeEEEEEECHHHHHHHHHhCChhHh-cCHhhhhh
Confidence 99999999999999997 899999999999999999999999998 99999974
No 6
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=99.90 E-value=5.4e-24 Score=180.90 Aligned_cols=115 Identities=23% Similarity=0.360 Sum_probs=105.1
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC 76 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~ 76 (162)
.|++.|.++.+|+||+++|++|+ ..+|..++++||+||+||||+||++|.++ ++..|
T Consensus 174 fpe~~r~l~~~Ga~il~~psa~~~~~~~~~~~~~~~arA~En~~~vv~an~~G~~~-------------------~~~~~ 234 (440)
T 1ems_A 174 FPELSLWNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAHN-------------------PKRQS 234 (440)
T ss_dssp CHHHHHHHHHTTCSEEECCBCCCHHHHHHHHHHHHHHHHHHHTCEEEECBBEEEEE-------------------TTEEE
T ss_pred ChHHHHHHHHcCCcEEEECCcCCCCCcHHHHHHHHHHHHHhcCcEEEEecccccCC-------------------CCcee
Confidence 48999999999999999999995 35799999999999999999999999752 34679
Q ss_pred cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecCc
Q 031270 77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDH 136 (162)
Q Consensus 77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~~ 136 (162)
+|+|+|+||+|++++++. .+|++++++||++.+.+.|..+|+++| ||||+|.+.+++.
T Consensus 235 ~G~S~ii~P~G~vla~~~-~~e~il~a~idl~~~~~~R~~~~~~~~-rr~~~y~~~~~~~ 292 (440)
T 1ems_A 235 YGHSMVVDPWGAVVAQCS-ERVDMCFAEIDLSYVDTLREMQPVFSH-RRSDLYTLHINEK 292 (440)
T ss_dssp ECCCEEECTTSCEEEECC-SSSCEEEEEEEHHHHHHHHHHSCGGGS-CCTTTCCCCCCCC
T ss_pred eeeeEEECCCCCeeccCC-CCCcEEEEEeCHHHHHHHHHhCChhhh-cChhhhhcccccc
Confidence 999999999999999996 689999999999999999999999998 9999999888754
No 7
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=99.89 E-value=3.6e-24 Score=181.01 Aligned_cols=130 Identities=18% Similarity=0.243 Sum_probs=102.1
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC 76 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~ 76 (162)
.|+++|.++.+||+|+++|++|. ..+|..++++||+||+||||+||++|.+. .+.... .+.......+...|
T Consensus 239 fPe~~r~la~~GAdill~psa~~~~~~~~~w~~l~raRAiEn~~~Vv~aN~vG~~~-~~~~~~---~~~g~~~~~~~~~f 314 (405)
T 2vhh_A 239 HPQNWMMFGLNGAEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPINRVGTEQ-FPNEYT---SGDGNKAHKEFGPF 314 (405)
T ss_dssp CHHHHHHHHHTTCSEEEEEECCBCTTTHHHHHHHHHHHHHHHTSEEEEEECEECCC-CC--------------------E
T ss_pred ChHHHHHHHHcCCCEEEEcccCCCCCCHHHHHHHHHHHHHHcCceEEEeccccccc-cccccc---cccCccccccCcee
Confidence 48999999999999999999983 46899999999999999999999999752 110000 00000000123468
Q ss_pred cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecC
Q 031270 77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRD 135 (162)
Q Consensus 77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~ 135 (162)
+|+|+|++|+|++++++..++|++++++||++.+++.|..++++.+ ||||+|...+.+
T Consensus 315 ~G~S~IidP~G~vla~~~~~~e~il~aeiDl~~~~~~R~~~p~~~~-rR~~lY~~~~~~ 372 (405)
T 2vhh_A 315 YGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRMT-QRVPLYAESFKK 372 (405)
T ss_dssp ECCCCCBCTTSCBCCCCCSSSCEEEEEEEETTHHHHHHHHHCTTTT-CCHHHHHHHHHH
T ss_pred ccccceECCCCCEeeccCCCCCeEEEEEECHHHHHHHHHhCCchhh-cCHHHHHHHHHH
Confidence 9999999999999999876789999999999999999999999998 999999976654
No 8
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=99.89 E-value=9e-24 Score=170.84 Aligned_cols=112 Identities=21% Similarity=0.302 Sum_probs=98.7
Q ss_pred CcHHHHHHHhCCCcEEEEeC---CCC----------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCccc
Q 031270 1 MPLLRTALYGKGIEIYCAPT---ADS----------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEE 67 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~---a~~----------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~ 67 (162)
.|++.|.++.+|++|+++|+ +++ ..+|+.++++||+||++||+.||++|.+
T Consensus 176 fpe~~r~l~~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~---------------- 239 (303)
T 1uf5_A 176 WPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKAGME---------------- 239 (303)
T ss_dssp CHHHHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHHHHHHHHHHHHHHHHTCEEEEEEBCEEE----------------
T ss_pred CHHHHHHHHHCCCCEEEEecCCccccccccCCccccHHHHHHHHHhhhhcCCcEEEEECccccc----------------
Confidence 48999999999999996653 332 2468889999999999999999999975
Q ss_pred CCCCCCccccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhh-CCcCCCCCCccceeeee
Q 031270 68 DLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFA-FDVVGHYSRPEVLSLVV 133 (162)
Q Consensus 68 ~~~~~~~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~-~~~~~~y~Rpd~~~~~~ 133 (162)
++..|.|+|+|++|+|+++++++.++|++++++||++.+++.|.. ++++.| ||||+|.+.+
T Consensus 240 ----~~~~~~G~S~ii~p~G~vl~~~~~~~~~~l~~~id~~~~~~~R~~~~~~~~~-rr~~~y~~~~ 301 (303)
T 1uf5_A 240 ----ENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQH-RQPQHYGLIA 301 (303)
T ss_dssp ----TTEEECCCCEEECTTSCEEEECCSSSSEEEEEEEEGGGGHHHHTTTTCHHHH-CCGGGCGGGG
T ss_pred ----CCccccceeEEECCCCCEeccCCCCCCcEEEEEEcHHHHHHHHhhcccchhc-cCHHHHHHhh
Confidence 356799999999999999999876788999999999999999999 999998 8999998654
No 9
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.4e-23 Score=167.10 Aligned_cols=108 Identities=18% Similarity=0.269 Sum_probs=96.6
Q ss_pred cHHHHHHH---hC---CCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCC
Q 031270 2 PLLRTALY---GK---GIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPD 72 (162)
Q Consensus 2 P~~~r~la---~~---Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~ 72 (162)
|++.|.++ .+ |++++++|++|+ ..+|+.++++||+||+||||.||++|.+. +
T Consensus 149 pe~~r~~~~~~~~~~~ga~~i~~~s~w~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~-------------------~ 209 (266)
T 2e11_A 149 PVFCRNRFDVERPGQLDFDLQLFVANWPSARAYAWKTLLRARAIENLCFVAAVNRVGVDG-------------------N 209 (266)
T ss_dssp TTTTCCCBSSSSTTSBSCSEEEEEECCCGGGHHHHHHHHHHHHHHTTSEEEEEECEEECT-------------------T
T ss_pred HHHHHHHHhhhhccCCCCcEEEEeCCCCCCchHHHHHHHHHHHHhcCcEEEEEcCCcCCC-------------------C
Confidence 66777654 54 999999999995 36799999999999999999999999752 3
Q ss_pred CccccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCcccee
Q 031270 73 SVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLS 130 (162)
Q Consensus 73 ~~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~ 130 (162)
+..|.|+|+|++|+|+++++++ ++|++++++||++.+++.|..+|++.| ||||+|.
T Consensus 210 ~~~~~G~S~ii~p~G~v~~~~~-~~e~~l~~~id~~~~~~~R~~~~~~~~-rr~~~y~ 265 (266)
T 2e11_A 210 QLHYAGDSAVIDFLGQPQVEIR-EQEQVVTTTISAAALAEHRARFPAMLD-GDSFVLG 265 (266)
T ss_dssp SCEEEEEEEEECTTSCEEEEEE-SSCEEEEEEECHHHHHHHHHHSCGGGG-CCCEEEC
T ss_pred CceEeeeEEEECCCCceeeecC-CCCeEEEEEEcHHHHHHHHHhCChhhh-cChhhhc
Confidence 4678999999999999999997 899999999999999999999999998 9999986
No 10
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=99.85 E-value=3.7e-21 Score=158.60 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=93.1
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA 77 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 77 (162)
.||+.|.++.+||||+++|++|. ..+|..++++||+||+|||+.||++|.+ +...|.
T Consensus 171 fpe~~r~~~~~Gadlil~psaw~~~~~~~~~~~~~arA~En~~~vv~an~~G~~--------------------~~~~~~ 230 (334)
T 2dyu_A 171 IPELAREAAYKGCNVYIRISGYSTQVNDQWILTNRSNAWHNLMYTVSVNLAGYD--------------------NVFYYF 230 (334)
T ss_dssp CHHHHHHHHHTTCSEEEEEESSCTTSHHHHHHHHHHHHHHHTCEEEEEECSBSS--------------------SSCCCC
T ss_pred chHHHHHHHHcCCCEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEECCCcCC--------------------CCeeee
Confidence 48999999999999999999885 4689999999999999999999999975 356789
Q ss_pred ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCC
Q 031270 78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGH 122 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~ 122 (162)
|+|+|+||+|++++++..++|++++++||++.+++.|..+++.+|
T Consensus 231 G~S~Iidp~G~vla~~~~~~e~il~a~idl~~~~~~R~~~~~~~~ 275 (334)
T 2dyu_A 231 GEGQICNFDGTTLVQGHRNPWEIVTGEIYPKMADNARLSWGLENN 275 (334)
T ss_dssp CEEEEECTTSCEEEECCCCTTCEEEEEECHHHHHHHHHHCSTTCH
T ss_pred eEEEEECCCCCEeeecCCCCCeEEEEEEcHHHHHHHHhhCchhhh
Confidence 999999999999999976789999999999999999999988765
No 11
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=99.83 E-value=1.3e-20 Score=155.89 Aligned_cols=101 Identities=21% Similarity=0.160 Sum_probs=92.0
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA 77 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 77 (162)
.|++.|.++.+||||+++|++|+ ..+|..++++||+||+||||+||++|.+ +...|+
T Consensus 171 fpe~~r~l~~~Gadlll~psa~~~~~~~~~~~l~~arA~En~~~vv~an~~G~~--------------------~~~~~~ 230 (341)
T 2uxy_A 171 YPEIWRDCAMKGAELIVRCQGYMYPAKDQQVMMAKAMAWANNCYVAVANAAGFD--------------------GVYSYF 230 (341)
T ss_dssp SHHHHHHHHHTTCSEEEEEECCBTTCHHHHHHHHHHHHHHHTCEEEEEECEEEC--------------------SSCEEE
T ss_pred CcHHHHHHHHcCCCEEEEcCCCCCCcHHHHHHHHHHHHHhCCcEEEEECCCCCC--------------------CCceee
Confidence 48999999999999999999984 4789999999999999999999999975 356899
Q ss_pred ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCC
Q 031270 78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVG 121 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~ 121 (162)
|+|+|+||+|+++++++.++|++++++||++.+++.|..++..+
T Consensus 231 G~S~Iidp~G~vla~~~~~~e~il~a~id~~~~~~~R~~~~~~~ 274 (341)
T 2uxy_A 231 GHSAIIGFDGRTLGECGEEEMGIQYAQLSLSQIRDARANDQSQN 274 (341)
T ss_dssp CCCEEECTTSCEEEECCSCTTCEEEEEEEHHHHHHHHHHCCTTC
T ss_pred eEEEEECCCCCEEEECCCCCCEEEEEEEcHHHHHHHHhhcchhh
Confidence 99999999999999997778999999999999999999888754
No 12
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=99.69 E-value=3.8e-17 Score=143.20 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=81.2
Q ss_pred CcHHHHHHHhCCCcEEEEeCCCC-----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcc
Q 031270 1 MPLLRTALYGKGIEIYCAPTADS-----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVV 75 (162)
Q Consensus 1 ~P~~~r~la~~Gaei~v~p~a~~-----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~ 75 (162)
.|+..|.++.+||+|+++|++++ ..+|..++++||+||+||||++|++|.+ ++..
T Consensus 174 fpe~~r~la~~GA~ii~~psAs~~~~gk~~~r~~ll~arA~e~~~~vvy~N~vG~~--------------------~~~~ 233 (565)
T 4f4h_A 174 HASAAQLAKAAGAQVLIVPNGSPYHMNKDAVRIDILRARIRETGLPMVYVNLVGGQ--------------------DELV 233 (565)
T ss_dssp SSHHHHHHHHTTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHHCCCEEEEECEEEE--------------------TTEE
T ss_pred ccchhHHHHhCCCeeeecccccccccCcHHHHHHHHHHHHHHhCCcEEEeeeecCC--------------------CCeE
Confidence 48999999999999999999984 3689999999999999999999999986 4678
Q ss_pred ccceeEEECCCCceeecCCCCCccEEEEEechH
Q 031270 76 CAGGSVIISPSGTVLAGPNYEGEALISADLDLG 108 (162)
Q Consensus 76 ~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~ 108 (162)
|+|+|+|++|+|+++++++.++|+++++|+|..
T Consensus 234 f~G~S~iidp~G~vla~~~~f~e~~~~~d~d~~ 266 (565)
T 4f4h_A 234 FDGGSFVLDGAGELVAKMPQFEEGNAIVEFDGA 266 (565)
T ss_dssp EEBCCEEECTTSCEEEECCBSCCEEEEEEEETT
T ss_pred EECCcceecCCCcEEEEccccccceEEEEeccc
Confidence 999999999999999999989999999999854
No 13
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=99.68 E-value=3.2e-17 Score=144.17 Aligned_cols=89 Identities=22% Similarity=0.246 Sum_probs=81.9
Q ss_pred cHHHHHHHhCCCcEEEEeCCCC-----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270 2 PLLRTALYGKGIEIYCAPTADS-----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC 76 (162)
Q Consensus 2 P~~~r~la~~Gaei~v~p~a~~-----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~ 76 (162)
|+..+.|+.+||+|+++|++|+ ..+|..++++||+||+||||+||++|.+ +...|
T Consensus 170 pe~~~~la~~Ga~ii~~psa~p~~~gk~~~~~~l~~~rA~e~~~~vv~an~~G~~--------------------~~~~f 229 (590)
T 3n05_A 170 GGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQ--------------------DELVF 229 (590)
T ss_dssp TSHHHHHHHTTCSEEEEEECCBCCCCSSCHHHHHHHHHHHHHTSEEEEEECEEEE--------------------TTEEE
T ss_pred ChHHHHHHHcCCCEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEecccCC--------------------CCeEE
Confidence 7899999999999999999984 3679999999999999999999999985 46789
Q ss_pred cceeEEECCCCceeecCCCCCccEEEEEechHHH
Q 031270 77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEI 110 (162)
Q Consensus 77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i 110 (162)
.|+|+|+||+|+++++++.++|+++++|||++.+
T Consensus 230 ~G~S~iidp~G~vla~~~~~~e~~~~~didl~~~ 263 (590)
T 3n05_A 230 DGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAA 263 (590)
T ss_dssp EBCCEEECTTSCEEEECCBTSCEEEEEEEEECCC
T ss_pred eCcEEEECCCCcEEEEcCCCCCcEEEEEEccccc
Confidence 9999999999999999987899999999998876
No 14
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=99.62 E-value=3.2e-16 Score=138.94 Aligned_cols=97 Identities=15% Similarity=0.194 Sum_probs=70.9
Q ss_pred cH-HHHHHHhCCCcEEEEeCCCC-----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcc
Q 031270 2 PL-LRTALYGKGIEIYCAPTADS-----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVV 75 (162)
Q Consensus 2 P~-~~r~la~~Gaei~v~p~a~~-----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~ 75 (162)
|+ ..+.++.+||+|+++|++|+ ..+|..++++||+||+||||+||++|.+. +...
T Consensus 171 Pe~~~r~la~~GAdii~~psas~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~-------------------~~~~ 231 (634)
T 3ilv_A 171 TDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEA-------------------GRMI 231 (634)
T ss_dssp -------CGGGTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHTTSEEEEEECEEESS-------------------SSCE
T ss_pred ChHHHHHHHHCCCcEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEcCccCCC-------------------CceE
Confidence 66 88999999999999999984 36899999999999999999999999851 4578
Q ss_pred ccceeEEECCCCceeecCCC---CCccEEEEEechHHHHHHHhhCC
Q 031270 76 CAGGSVIISPSGTVLAGPNY---EGEALISADLDLGEIAREKFAFD 118 (162)
Q Consensus 76 ~~G~S~Iv~P~G~~la~~~~---~~E~iv~adiDl~~i~~~R~~~~ 118 (162)
|.|+|+|+ |+|+++++++. .++++++++||++.++..|..++
T Consensus 232 f~G~S~I~-p~G~vla~~~~f~~~~~~vi~a~iDl~~~~~~R~~~~ 276 (634)
T 3ilv_A 232 YDGEVLIA-HKGKLIQRNDRLSFKNVNLIYADIATDSAETPETVLT 276 (634)
T ss_dssp EECCEEEE-ETTEEEEECCSSCSSSEEEEEEEEEC-----------
T ss_pred EcceEEEE-cCCeEEEECCCCCCCCceEEEEEEEhHHhHHHHhcCC
Confidence 99999888 99999999874 34689999999999988887654
No 15
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=99.54 E-value=7.6e-15 Score=131.08 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=84.0
Q ss_pred cHHH-HHHHhCCCcEEEEeCCCC----h-hhHHHHHHHHhHh-cCceEEEcCcccccCCCCCCCCccccCcccCCCCCCc
Q 031270 2 PLLR-TALYGKGIEIYCAPTADS----R-DVWQASMTHIALE-GGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSV 74 (162)
Q Consensus 2 P~~~-r~la~~Gaei~v~p~a~~----~-~~w~~~~~arA~E-n~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~ 74 (162)
|+.. +.++.+||+|+++|++|+ . ..|..+++++|.+ +++||+++|+.|.+ .+..
T Consensus 183 Pe~~~r~la~~GAdiil~pSasp~~~gk~~~r~~l~~~~aar~~~~yV~a~~~~G~~-------------------~~~l 243 (680)
T 3sdb_A 183 PMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGES-------------------TTDL 243 (680)
T ss_dssp SSCHHHHHHHHTCCEEEEECCCCCCTTHHHHHHHHHHHHHHHTTSEEEEECCCTTSC-------------------CSSC
T ss_pred cccHHHHHHhcCCeEEEEecCCccccCcHHHHHHHHHHHHHHhCCcEEEEECCcccC-------------------CCCe
Confidence 6774 899999999999999984 2 3456777877666 57888888877763 2467
Q ss_pred cccceeEEECCCCceeecCCCC--CccEEEEEechHHHHHHHhhCCcCCC
Q 031270 75 VCAGGSVIISPSGTVLAGPNYE--GEALISADLDLGEIAREKFAFDVVGH 122 (162)
Q Consensus 75 ~~~G~S~Iv~P~G~~la~~~~~--~E~iv~adiDl~~i~~~R~~~~~~~~ 122 (162)
.|.|+|+|+ |+|+++++++.+ +|+++++|||++.+++.|..++++.+
T Consensus 244 ~f~G~S~I~-p~G~vla~~~~f~~~e~ll~adiDl~~l~~~R~~~~~~~~ 292 (680)
T 3sdb_A 244 AWDGQTMIW-ENGALLAESERFPKGVRRSVADVDTELLRSERLRMGTFDD 292 (680)
T ss_dssp CCCCCEEEE-ETTEEEEECCSSCSSCEEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred EEeccEEEE-cCCEEEEECCCCCCCCcEEEEEEcHHHHHHHHHhCCchhh
Confidence 899999999 999999999765 89999999999999999998888766
No 16
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=86.98 E-value=1.3 Score=34.46 Aligned_cols=65 Identities=9% Similarity=0.044 Sum_probs=41.8
Q ss_pred HHHHhCCCcEEEEeCCC--C--h-----------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCC
Q 031270 6 TALYGKGIEIYCAPTAD--S--R-----------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLT 70 (162)
Q Consensus 6 r~la~~Gaei~v~p~a~--~--~-----------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~ 70 (162)
+..+.+|++|+|-|=.+ + . ..+...++..|.+++++++.-...-.+
T Consensus 47 ~~A~~~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~i~iv~G~~~~~~------------------- 107 (281)
T 3p8k_A 47 EKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIR------------------- 107 (281)
T ss_dssp HHHCCTTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHHHTCEEEEEEEEEEE-------------------
T ss_pred HHHHhCCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhhCCeEEEEeeeEEcc-------------------
Confidence 34556899999998554 1 1 223445677788999998754221111
Q ss_pred CCCccccceeEEECCCCceee
Q 031270 71 PDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 71 ~~~~~~~G~S~Iv~P~G~~la 91 (162)
+..++-.+.+++|+|+++.
T Consensus 108 --~~~~yNs~~~i~~~G~i~~ 126 (281)
T 3p8k_A 108 --NNQIFNTAFSVNKSGQLIN 126 (281)
T ss_dssp --TTEEEEEEEEECTTSCEEE
T ss_pred --CCcEEEEEEEEcCCCeEEE
Confidence 1134567889999998874
No 17
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=85.99 E-value=4.3 Score=31.54 Aligned_cols=66 Identities=14% Similarity=0.085 Sum_probs=42.3
Q ss_pred HHHHHhCCCcEEEEeCCC--C--hh------------hHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccC
Q 031270 5 RTALYGKGIEIYCAPTAD--S--RD------------VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEED 68 (162)
Q Consensus 5 ~r~la~~Gaei~v~p~a~--~--~~------------~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~ 68 (162)
.+..+.+|++|+|-|=.+ + .. .+...++..|.+++++++.-... ..
T Consensus 46 i~~A~~~gadlvvfPE~~l~gy~~~d~~~~~a~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~----------------- 107 (283)
T 3hkx_A 46 AARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRGIALVWSLPG-PE----------------- 107 (283)
T ss_dssp HHHHHHTTCSEEECCTTGGGCSCHHHHHHHCCHHHHHHHHHHHHHHHHHTTSEEEECCBC-SS-----------------
T ss_pred HHHHHHCCCCEEEcCCCcccCCChHHHHHHhccccCCHHHHHHHHHHHHhCCEEEEEEEE-Ec-----------------
Confidence 345567899999998553 1 11 12334567788999998865321 10
Q ss_pred CCCCCccccceeEEECCCCceee
Q 031270 69 LTPDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 69 ~~~~~~~~~G~S~Iv~P~G~~la 91 (162)
.++ .++-.+.+++|+|+++.
T Consensus 108 --~~~-~~yNs~~~i~~~G~i~~ 127 (283)
T 3hkx_A 108 --GPE-QRGITAELADEHGEVLA 127 (283)
T ss_dssp --CTT-TCCBEEEEECTTSCEEE
T ss_pred --CCC-CEEEEEEEEcCCCcEEE
Confidence 012 34567889999998874
No 18
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=80.85 E-value=4.1 Score=31.34 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=40.9
Q ss_pred HHHHhCCCcEEEEeCCC--C--h-----------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCC
Q 031270 6 TALYGKGIEIYCAPTAD--S--R-----------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLT 70 (162)
Q Consensus 6 r~la~~Gaei~v~p~a~--~--~-----------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~ 70 (162)
+..+.+|++|+|-|=.+ + . ..+...++..|.+++++++.-...-.+
T Consensus 29 ~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~~------------------- 89 (276)
T 2w1v_A 29 REAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKESSIYLIGGSIPEED------------------- 89 (276)
T ss_dssp HHHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHHHTSEEECCCEEEEE-------------------
T ss_pred HHHHHCCCCEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHHHcCeEEEecceeecC-------------------
Confidence 34567899999998543 1 1 123445667788999998753221110
Q ss_pred CCCccccceeEEECCCCceee
Q 031270 71 PDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 71 ~~~~~~~G~S~Iv~P~G~~la 91 (162)
++ .++-.+.+++|+|+++.
T Consensus 90 -~~-~~yNs~~~i~~~G~i~~ 108 (276)
T 2w1v_A 90 -AG-KLYNTCSVFGPDGSLLV 108 (276)
T ss_dssp -TT-EEEEEEEEECTTSCEEE
T ss_pred -CC-cEEEEEEEECCCCcEEE
Confidence 11 24566788999998765
No 19
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=76.71 E-value=7.9 Score=29.84 Aligned_cols=64 Identities=9% Similarity=0.069 Sum_probs=40.2
Q ss_pred HhCCCcEEEEeCCC--C--h---------------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCC
Q 031270 9 YGKGIEIYCAPTAD--S--R---------------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDL 69 (162)
Q Consensus 9 a~~Gaei~v~p~a~--~--~---------------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~ 69 (162)
+.+|++|+|-|=.+ + . ..+...++..|.+++++++.-...-.+
T Consensus 42 ~~~gadlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~~------------------ 103 (291)
T 1f89_A 42 EQPDTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELD------------------ 103 (291)
T ss_dssp HCTTEEEEECCTTTTSCSCHHHHHHHTTBCCSSSCCHHHHHHHHHHHHSSCEEECCCEEEEC------------------
T ss_pred ccCCCeEEEcCCCcccCCChHHHHHHhhhhccCCCChHHHHHHHHHHHcCcEEEeceeeccc------------------
Confidence 67899999998543 2 1 223445667788999998764221111
Q ss_pred CCCCccccceeEEECCCCceee
Q 031270 70 TPDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 70 ~~~~~~~~G~S~Iv~P~G~~la 91 (162)
.....++-.+.+++|+|+++.
T Consensus 104 -~~~~~~yNs~~~i~~~G~i~~ 124 (291)
T 1f89_A 104 -PKTDKIYNTSIIFNEDGKLID 124 (291)
T ss_dssp -TTTCCEEEEEEEECTTSCEEE
T ss_pred -CCCCceEEEEEEECCCCcEEe
Confidence 001134566888999998765
No 20
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=76.51 E-value=7.5 Score=32.08 Aligned_cols=70 Identities=13% Similarity=0.089 Sum_probs=41.9
Q ss_pred HHHHHhCCCcEEEEeCCCC--h---h-----------hHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccC
Q 031270 5 RTALYGKGIEIYCAPTADS--R---D-----------VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEED 68 (162)
Q Consensus 5 ~r~la~~Gaei~v~p~a~~--~---~-----------~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~ 68 (162)
.+..+.+|++|+|-|=.+. . + .+...++..|.+++++++.-.....+.
T Consensus 39 i~~A~~~gadlvv~PE~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~e~---------------- 102 (440)
T 1ems_A 39 IERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKDP---------------- 102 (440)
T ss_dssp HHHHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEET----------------
T ss_pred HHHHHHCCCCEEECCCcccccCcchhHHHHhhccCCCHHHHHHHHHHHHcCeEEEecccccccc----------------
Confidence 3445678999999995541 1 1 122345667889999987653320010
Q ss_pred CCCCCccccceeEEECCCCceeec
Q 031270 69 LTPDSVVCAGGSVIISPSGTVLAG 92 (162)
Q Consensus 69 ~~~~~~~~~G~S~Iv~P~G~~la~ 92 (162)
..+..++-.+.+++|+|+++..
T Consensus 103 --~~~~~~yNs~~~i~~~G~i~~~ 124 (440)
T 1ems_A 103 --SDAAHPWNTHLIIDSDGVTRAE 124 (440)
T ss_dssp --TEEEEEEEEEEEECTTSCEEEE
T ss_pred --CCCCcEEEEEEEECCCCcEEEE
Confidence 0011345667889999987653
No 21
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=71.48 E-value=15 Score=30.27 Aligned_cols=67 Identities=19% Similarity=0.147 Sum_probs=40.7
Q ss_pred HHHHhCCCcEEEEeCCC--Ch-------------------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccC
Q 031270 6 TALYGKGIEIYCAPTAD--SR-------------------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSG 64 (162)
Q Consensus 6 r~la~~Gaei~v~p~a~--~~-------------------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~ 64 (162)
+..+.+|++|+|-|=.+ +. ..+...++..|.+++++++..-. -...
T Consensus 106 ~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~ae~~~~~~~~~~l~~lA~~~~i~Iv~G~~-e~~~------------ 172 (405)
T 2vhh_A 106 KAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSIL-ERDM------------ 172 (405)
T ss_dssp HHHHHTTCSEEECCTTTTSCSCC---------CCCBCTTTSHHHHHHHHHHHHTTCEEEEEEE-EEET------------
T ss_pred HHHHHCCCCEEEcCCcccccccccccchhhHHHHHhhccCCHHHHHHHHHHHHCCEEEEEece-eccc------------
Confidence 34567899999998543 11 11224466778899999986311 1100
Q ss_pred cccCCCCCCccccceeEEECCCCceee
Q 031270 65 IEEDLTPDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 65 ~e~~~~~~~~~~~G~S~Iv~P~G~~la 91 (162)
..+..++-.+.+++|+|+++.
T Consensus 173 ------~~~~~~yNsa~vi~p~G~i~~ 193 (405)
T 2vhh_A 173 ------EHGETIWNTAVVISNSGRYLG 193 (405)
T ss_dssp ------TTTTEEEEEEEEECTTSCEEE
T ss_pred ------CCCCcEEEEEEEECCCCeEEE
Confidence 001235567888999998764
No 22
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=66.83 E-value=12 Score=28.36 Aligned_cols=63 Identities=16% Similarity=0.328 Sum_probs=40.0
Q ss_pred HHHHhCCCcEEEEeCCC--C-----hh------------hHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcc
Q 031270 6 TALYGKGIEIYCAPTAD--S-----RD------------VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIE 66 (162)
Q Consensus 6 r~la~~Gaei~v~p~a~--~-----~~------------~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e 66 (162)
+..+.+|++|+|-|=.+ + .+ .+...++..|.+++++++.- ..-.
T Consensus 28 ~~A~~~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~~~iv~G-~~~~---------------- 90 (262)
T 3ivz_A 28 KEASKQGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTGVYIVAG-TAEK---------------- 90 (262)
T ss_dssp HHHHHTTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHHHHCCEEEEE-EEEE----------------
T ss_pred HHHHHCCCCEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcCcEEEEe-EEEe----------------
Confidence 34567899999998543 1 11 23345677888899998865 2111
Q ss_pred cCCCCCCccccceeEEECCCCceee
Q 031270 67 EDLTPDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 67 ~~~~~~~~~~~G~S~Iv~P~G~~la 91 (162)
++..++-.+.+++|+| ++.
T Consensus 91 -----~~~~~yNs~~~i~~~G-~~~ 109 (262)
T 3ivz_A 91 -----DGDVLYNSAVVVGPRG-FIG 109 (262)
T ss_dssp -----ETTEEEEEEEEEETTE-EEE
T ss_pred -----eCCcEEEEEEEEcCCe-eEE
Confidence 1123456688889999 664
No 23
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=66.24 E-value=19 Score=28.64 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=37.9
Q ss_pred CCCcEEEEeCCC--C--h-------------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCC
Q 031270 11 KGIEIYCAPTAD--S--R-------------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDS 73 (162)
Q Consensus 11 ~Gaei~v~p~a~--~--~-------------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~ 73 (162)
+|++|+|-|=.+ + . ..+...++..|.+++++++..-. -..+ .+.
T Consensus 51 ~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~~~~~~~l~~~a~~~~i~iv~G~~-e~~~------------------~~~ 111 (334)
T 2dyu_A 51 PGVELIIFPEYSTQGLNTAKWLSEEFLLDVPGKETELYAKACKEAKVYGVFSIM-ERNP------------------DSN 111 (334)
T ss_dssp TTEEEEECCTTTTTCCCTTTTTSGGGCBCSSSHHHHHHHHHHHHHTCEEEEEEE-ECCS------------------STT
T ss_pred CCCcEEEcCCCccccCCCChhHHHHhhccCCCHHHHHHHHHHHHhCeEEEEeeE-EECC------------------CCC
Confidence 799999998432 1 0 12344567778899999887321 1110 011
Q ss_pred ccccceeEEECCCCceee
Q 031270 74 VVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 74 ~~~~G~S~Iv~P~G~~la 91 (162)
..++-.+.+++|+|+++.
T Consensus 112 ~~~yNsa~vi~p~G~i~~ 129 (334)
T 2dyu_A 112 KNPYNTAIIIDPQGEIIL 129 (334)
T ss_dssp SCCEEEEEEECTTSCEEE
T ss_pred ceeEEEEEEECCCCCEEE
Confidence 114566888999998765
No 24
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=59.21 E-value=16 Score=28.09 Aligned_cols=68 Identities=13% Similarity=0.017 Sum_probs=39.9
Q ss_pred HHHHhCCCcEEEEeCCC--Ch--h-------------------hHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccc
Q 031270 6 TALYGKGIEIYCAPTAD--SR--D-------------------VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVF 62 (162)
Q Consensus 6 r~la~~Gaei~v~p~a~--~~--~-------------------~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~ 62 (162)
+..+.+|++|+|-|=.+ +. . .+...++..|.+++++++.--. -..+
T Consensus 32 ~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~-~~~~---------- 100 (303)
T 1uf5_A 32 TKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYA-ELVV---------- 100 (303)
T ss_dssp HHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHHHHHHHHTCEEEEEEE-EEEE----------
T ss_pred HHHHhcCCCEEEeccccccCCCccccccchhhhHHHHhhcCCCHHHHHHHHHHHHhCeEEEEeee-EecC----------
Confidence 34567899999998543 11 0 1223466778889999876421 1100
Q ss_pred cCcccCCCCCCccccceeEEECCCCceee
Q 031270 63 SGIEEDLTPDSVVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 63 ~~~e~~~~~~~~~~~G~S~Iv~P~G~~la 91 (162)
+..+..++-.+.+++|+|+++.
T Consensus 101 -------~~~~~~~yNs~~~i~~~G~i~~ 122 (303)
T 1uf5_A 101 -------EGGVKRRFNTSILVDKSGKIVG 122 (303)
T ss_dssp -------ETTEEEEEEEEEEECTTSCEEE
T ss_pred -------CCCCcceeeEEEEECCCCCEee
Confidence 0001134566788999998765
No 25
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=56.34 E-value=20 Score=27.08 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=37.9
Q ss_pred hCCCcEEEEeCCC--C--h----------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcc
Q 031270 10 GKGIEIYCAPTAD--S--R----------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVV 75 (162)
Q Consensus 10 ~~Gaei~v~p~a~--~--~----------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~ 75 (162)
.+|++|+|-|=.+ + . ..+...++..|.+++++++.-...- + ++ .
T Consensus 33 ~~gadlvv~PE~~~~gy~~~~~~~a~~~~~~~~~~l~~~a~~~~~~iv~G~~~~-~--------------------~~-~ 90 (266)
T 2e11_A 33 AGQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAARLGAAITGSVQLR-T--------------------EH-G 90 (266)
T ss_dssp TTTCSEEECCTTTTTCSCSGGGGGCEETTSHHHHHHHHHHHHHTSEEEEEEEEE-E--------------------TT-E
T ss_pred cCCCCEEECCCCccccCChhHHHhhccCCCHHHHHHHHHHHHhCCEEEEeeeEc-c--------------------CC-c
Confidence 5799999998543 1 1 1244456677888999887643211 1 11 2
Q ss_pred ccceeEEECCCCcee
Q 031270 76 CAGGSVIISPSGTVL 90 (162)
Q Consensus 76 ~~G~S~Iv~P~G~~l 90 (162)
++-.+.+++|+|+++
T Consensus 91 ~yNs~~~i~~~G~i~ 105 (266)
T 2e11_A 91 VFNRLLWATPDGALQ 105 (266)
T ss_dssp EEEEEEEECTTSCEE
T ss_pred EEEEEEEECCCCCEE
Confidence 446678899999876
No 26
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=56.26 E-value=36 Score=27.04 Aligned_cols=64 Identities=9% Similarity=0.096 Sum_probs=37.6
Q ss_pred CCCcEEEEeCCC--C--h-------------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCC
Q 031270 11 KGIEIYCAPTAD--S--R-------------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDS 73 (162)
Q Consensus 11 ~Gaei~v~p~a~--~--~-------------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~ 73 (162)
+|++|+|-|=.+ + . ..+...++..|.+++++++.. ..|... ...++
T Consensus 50 ~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~~~~~~~l~~~a~~~~i~iv~G-~~ge~~----------------~~~~~ 112 (341)
T 2uxy_A 50 PGMDLVVFPEYSLQGIMYDPAEMMETAVAIPGEETEIFSRACRKANVWGVFS-LTGERH----------------EEHPR 112 (341)
T ss_dssp TTEEEEECCTTTTTBCCCSHHHHHHHCBCSSSHHHHHHHHHHHHHTCEEEEE-EEEECC----------------TTTTS
T ss_pred CCCcEEEeCCCcccccCCCHHHHHHHhccCCCHHHHHHHHHHHHhCcEEEEE-eeeeEc----------------CCCCC
Confidence 799999998543 1 1 112233567788999988752 222110 00001
Q ss_pred ccccceeEEECCCCceee
Q 031270 74 VVCAGGSVIISPSGTVLA 91 (162)
Q Consensus 74 ~~~~G~S~Iv~P~G~~la 91 (162)
..++-.+.+++|+|+++.
T Consensus 113 ~~~yNsa~vi~p~G~i~~ 130 (341)
T 2uxy_A 113 KAPYNTLVLIDNNGEIVQ 130 (341)
T ss_dssp SCCEEEEEEECTTSCEEE
T ss_pred CceEEEEEEECCCCcEEE
Confidence 124566889999998765
No 27
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=30.63 E-value=1e+02 Score=23.91 Aligned_cols=49 Identities=10% Similarity=-0.108 Sum_probs=32.9
Q ss_pred cHHHHHHHhCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEcCcccc
Q 031270 2 PLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCR 50 (162)
Q Consensus 2 P~~~r~la~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~aN~~g~ 50 (162)
|.+...+...|...+++-+..-.+.....+...|.++++.++..|..|-
T Consensus 78 ~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~vigPNc~Gi 126 (288)
T 1oi7_A 78 ADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLIGGNCPGI 126 (288)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEESSSCEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCeE
Confidence 4556777888988555433321233345567778889999999998875
No 28
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=30.58 E-value=65 Score=20.92 Aligned_cols=15 Identities=7% Similarity=0.031 Sum_probs=12.1
Q ss_pred ceeEEECCCCceeec
Q 031270 78 GGSVIISPSGTVLAG 92 (162)
Q Consensus 78 G~S~Iv~P~G~~la~ 92 (162)
-...++|++|+++..
T Consensus 111 P~~~lid~~G~i~~~ 125 (142)
T 3ewl_A 111 PTIYLLDGRKRVILK 125 (142)
T ss_dssp SEEEEECTTCBEEEC
T ss_pred CeEEEECCCCCEEec
Confidence 357899999998774
No 29
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=30.49 E-value=89 Score=24.33 Aligned_cols=48 Identities=13% Similarity=-0.025 Sum_probs=32.8
Q ss_pred cHHHHHHHhCCCcEEEE-eCCCChhhHHHHHHHHhHhcCceEEEcCcccc
Q 031270 2 PLLRTALYGKGIEIYCA-PTADSRDVWQASMTHIALEGGCFVLSANQFCR 50 (162)
Q Consensus 2 P~~~r~la~~Gaei~v~-p~a~~~~~w~~~~~arA~En~~fVv~aN~~g~ 50 (162)
+++...+...|...+++ +...+ +.....+...|.++++.++..|..|-
T Consensus 84 ~~~v~ea~~~Gi~~vVi~t~G~~-~~~~~~l~~~A~~~gi~viGPNc~Gi 132 (294)
T 2yv1_A 84 KDAVFEAIDAGIELIVVITEHIP-VHDTMEFVNYAEDVGVKIIGPNTPGI 132 (294)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCC-HHHHHHHHHHHHHHTCEEECSSCCEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCC-HHHHHHHHHHHHHcCCEEEcCCCcee
Confidence 45567778889995554 33333 23345566778889999999998875
No 30
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=30.08 E-value=93 Score=24.25 Aligned_cols=48 Identities=15% Similarity=0.031 Sum_probs=32.4
Q ss_pred cHHHHHHHhCCCcEEEEeC-CCChhhHHHHHHHHhHhcCceEEEcCcccc
Q 031270 2 PLLRTALYGKGIEIYCAPT-ADSRDVWQASMTHIALEGGCFVLSANQFCR 50 (162)
Q Consensus 2 P~~~r~la~~Gaei~v~p~-a~~~~~w~~~~~arA~En~~fVv~aN~~g~ 50 (162)
+++...+...|...+++-+ ..+ +.....+...|.++++.++..|..|-
T Consensus 85 ~~~v~ea~~~Gi~~vVi~t~G~~-~~~~~~l~~~A~~~gi~viGPNc~Gi 133 (297)
T 2yv2_A 85 PDAVYEAVDAGIRLVVVITEGIP-VHDTMRFVNYARQKGATIIGPNCPGA 133 (297)
T ss_dssp HHHHHHHHHTTCSEEEECCCCCC-HHHHHHHHHHHHHHTCEEECSSSCEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCC-HHHHHHHHHHHHHcCCEEEcCCCCee
Confidence 4556677888988555433 333 23344566777889999999998875
No 31
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=28.30 E-value=84 Score=24.35 Aligned_cols=49 Identities=12% Similarity=-0.031 Sum_probs=32.1
Q ss_pred cHHHHHHHhCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEcCcccc
Q 031270 2 PLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCR 50 (162)
Q Consensus 2 P~~~r~la~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~aN~~g~ 50 (162)
+++...+...|..+++.-+..-.......+...|.++++.++..|..|-
T Consensus 78 ~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~liGPNc~Gi 126 (288)
T 2nu8_A 78 KDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNTPGV 126 (288)
T ss_dssp HHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEECSSCCEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCcce
Confidence 4566777888888766533321122233556677889999999998664
No 32
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=25.62 E-value=1e+02 Score=21.26 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=12.1
Q ss_pred eeEEECCCCceeecC
Q 031270 79 GSVIISPSGTVLAGP 93 (162)
Q Consensus 79 ~S~Iv~P~G~~la~~ 93 (162)
..+++|++|+++..-
T Consensus 135 ~~~lid~~G~i~~~~ 149 (176)
T 3kh7_A 135 ETYLIDKQGIIRHKI 149 (176)
T ss_dssp EEEEECTTCBEEEEE
T ss_pred eEEEECCCCeEEEEE
Confidence 488999999987653
No 33
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=24.47 E-value=36 Score=16.36 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=14.3
Q ss_pred ceeEEECCCCceeecCC
Q 031270 78 GGSVIISPSGTVLAGPN 94 (162)
Q Consensus 78 G~S~Iv~P~G~~la~~~ 94 (162)
..|.|+|-+|+++.+..
T Consensus 5 ~ss~IYD~~g~~i~~lg 21 (26)
T 2v2f_A 5 TSSKIYDNKNQLIADLG 21 (26)
T ss_pred CCCEEEeCCCCEeeecc
Confidence 56899999999998763
No 34
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=23.37 E-value=1.5e+02 Score=19.20 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=12.7
Q ss_pred eeEEECCCCceeecC
Q 031270 79 GSVIISPSGTVLAGP 93 (162)
Q Consensus 79 ~S~Iv~P~G~~la~~ 93 (162)
..+++|++|+++...
T Consensus 116 ~~~lid~~G~i~~~~ 130 (143)
T 4fo5_A 116 KNFLINDEGVIIAAN 130 (143)
T ss_dssp CEEEECTTSBEEEES
T ss_pred cEEEECCCCEEEEcc
Confidence 489999999988765
No 35
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=22.25 E-value=1e+02 Score=24.68 Aligned_cols=46 Identities=7% Similarity=0.018 Sum_probs=31.8
Q ss_pred HHHHHhCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEcCcccc
Q 031270 5 RTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCR 50 (162)
Q Consensus 5 ~r~la~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~aN~~g~ 50 (162)
..++...|...+++.+..-.+.....+...|.++++-++..|..|-
T Consensus 97 ~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~rliGPNc~Gi 142 (334)
T 3mwd_B 97 METMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIGPATVGG 142 (334)
T ss_dssp HHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEECSSCCCE
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEccCCccc
Confidence 3444457887777755543334445567778899999999999884
No 36
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=21.94 E-value=1.7e+02 Score=18.91 Aligned_cols=15 Identities=20% Similarity=0.177 Sum_probs=11.9
Q ss_pred eeEEECCCCceeecC
Q 031270 79 GSVIISPSGTVLAGP 93 (162)
Q Consensus 79 ~S~Iv~P~G~~la~~ 93 (162)
..+++|++|+++...
T Consensus 116 ~~~lid~~G~i~~~~ 130 (142)
T 3eur_A 116 TLYLLDKNKTVLLKD 130 (142)
T ss_dssp EEEEECTTCBEEEEE
T ss_pred eEEEECCCCcEEecC
Confidence 478999999987653
Done!