Query 031271
Match_columns 162
No_of_seqs 153 out of 1851
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 11:44:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0907 Thioredoxin [Posttrans 99.9 6.4E-25 1.4E-29 149.8 12.0 103 24-160 3-105 (106)
2 KOG0910 Thioredoxin-like prote 99.9 4.8E-25 1E-29 156.7 10.8 83 79-162 65-149 (150)
3 cd02985 TRX_CDSP32 TRX family, 99.9 6.1E-23 1.3E-27 139.5 13.2 98 27-160 2-102 (103)
4 cd02954 DIM1 Dim1 family; Dim1 99.9 6.1E-23 1.3E-27 141.4 10.4 81 79-160 18-110 (114)
5 PHA02278 thioredoxin-like prot 99.9 3.2E-22 6.9E-27 136.1 12.0 77 79-156 18-100 (103)
6 cd02948 TRX_NDPK TRX domain, T 99.9 7.5E-22 1.6E-26 133.9 12.5 80 79-160 21-102 (102)
7 PLN00410 U5 snRNP protein, DIM 99.9 6.5E-22 1.4E-26 141.1 12.4 105 21-161 4-120 (142)
8 PF00085 Thioredoxin: Thioredo 99.9 2.7E-21 5.8E-26 129.9 14.0 81 79-160 21-103 (103)
9 KOG0908 Thioredoxin-like prote 99.9 3.9E-22 8.4E-27 151.6 10.3 105 21-161 2-106 (288)
10 cd02989 Phd_like_TxnDC9 Phosdu 99.9 2.4E-21 5.1E-26 133.9 12.2 93 18-148 2-94 (113)
11 cd02986 DLP Dim1 family, Dim1- 99.9 3.4E-21 7.3E-26 132.1 12.0 97 28-160 2-110 (114)
12 cd03065 PDI_b_Calsequestrin_N 99.9 8.9E-21 1.9E-25 132.1 12.7 106 17-161 6-119 (120)
13 PTZ00051 thioredoxin; Provisio 99.9 9.9E-21 2.2E-25 126.8 12.1 97 21-155 1-97 (98)
14 cd02957 Phd_like Phosducin (Ph 99.9 1.4E-20 3E-25 129.9 12.7 93 19-148 3-95 (113)
15 cd02956 ybbN ybbN protein fami 99.9 9.3E-21 2E-25 126.6 11.4 79 79-158 16-96 (96)
16 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.2E-20 2.5E-25 130.4 11.9 77 79-156 33-112 (113)
17 COG3118 Thioredoxin domain-con 99.9 6.2E-21 1.4E-25 148.8 11.4 110 16-161 19-130 (304)
18 cd02999 PDI_a_ERp44_like PDIa 99.9 5.6E-21 1.2E-25 129.3 9.7 78 78-157 21-100 (100)
19 cd02984 TRX_PICOT TRX domain, 99.9 1.7E-20 3.7E-25 125.3 11.6 78 79-157 18-96 (97)
20 cd02963 TRX_DnaJ TRX domain, D 99.8 1.4E-20 3.1E-25 129.5 11.3 81 79-160 28-111 (111)
21 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1.8E-20 3.9E-25 127.0 11.0 78 79-157 23-104 (104)
22 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 2E-20 4.4E-25 126.3 10.7 77 79-156 22-100 (101)
23 PRK10996 thioredoxin 2; Provis 99.8 1.7E-20 3.7E-25 134.0 10.3 82 79-161 56-139 (139)
24 PRK09381 trxA thioredoxin; Pro 99.8 1.2E-19 2.6E-24 124.0 13.6 83 79-162 25-109 (109)
25 cd02987 Phd_like_Phd Phosducin 99.8 8.7E-20 1.9E-24 135.1 13.1 80 79-160 87-174 (175)
26 cd02996 PDI_a_ERp44 PDIa famil 99.8 1.6E-19 3.4E-24 123.4 10.8 78 79-157 22-108 (108)
27 cd02994 PDI_a_TMX PDIa family, 99.8 3.4E-19 7.3E-24 120.1 12.1 79 79-159 20-101 (101)
28 cd02949 TRX_NTR TRX domain, no 99.8 5.1E-19 1.1E-23 118.7 11.0 82 76-158 14-97 (97)
29 cd02965 HyaE HyaE family; HyaE 99.8 4.9E-19 1.1E-23 121.3 10.9 75 79-154 31-109 (111)
30 cd02950 TxlA TRX-like protein 99.8 6.5E-19 1.4E-23 126.3 12.1 84 77-161 22-110 (142)
31 TIGR01068 thioredoxin thioredo 99.8 1.3E-18 2.8E-23 116.3 12.3 82 79-161 18-101 (101)
32 cd02962 TMX2 TMX2 family; comp 99.8 2E-18 4.2E-23 125.0 12.9 93 19-148 27-127 (152)
33 PTZ00443 Thioredoxin domain-co 99.8 1.8E-18 3.9E-23 132.4 13.4 108 19-161 29-139 (224)
34 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.4E-18 3.1E-23 118.3 11.0 78 79-157 22-108 (109)
35 cd02975 PfPDO_like_N Pyrococcu 99.8 2E-18 4.3E-23 119.2 11.6 82 79-161 26-110 (113)
36 cd03005 PDI_a_ERp46 PDIa famil 99.8 1.1E-18 2.4E-23 117.3 9.8 78 79-157 20-102 (102)
37 cd02997 PDI_a_PDIR PDIa family 99.8 3.6E-18 7.8E-23 115.1 11.6 78 79-157 21-104 (104)
38 TIGR01126 pdi_dom protein disu 99.8 1.1E-18 2.4E-23 116.9 8.6 83 78-161 16-102 (102)
39 cd02953 DsbDgamma DsbD gamma f 99.8 9.1E-19 2E-23 118.7 8.2 79 79-158 15-104 (104)
40 cd02951 SoxW SoxW family; SoxW 99.8 4.5E-18 9.7E-23 119.0 11.1 82 79-161 18-119 (125)
41 PTZ00062 glutaredoxin; Provisi 99.8 4E-18 8.6E-23 128.7 11.6 74 79-161 21-94 (204)
42 cd03000 PDI_a_TMX3 PDIa family 99.8 4.4E-18 9.5E-23 115.5 10.2 80 79-160 19-103 (104)
43 cd02988 Phd_like_VIAF Phosduci 99.8 1.1E-17 2.3E-22 125.5 12.7 77 79-159 106-190 (192)
44 cd03001 PDI_a_P5 PDIa family, 99.8 1.3E-17 2.7E-22 112.3 11.7 78 79-157 22-102 (103)
45 TIGR01295 PedC_BrcD bacterioci 99.7 3.6E-17 7.7E-22 114.5 11.9 79 79-158 27-121 (122)
46 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 4.6E-17 1E-21 109.5 10.3 77 79-157 22-104 (104)
47 cd02993 PDI_a_APS_reductase PD 99.7 7.7E-17 1.7E-21 110.4 10.8 78 79-157 25-109 (109)
48 cd02947 TRX_family TRX family; 99.7 1.3E-16 2.9E-21 103.8 11.1 80 77-157 12-92 (93)
49 cd02998 PDI_a_ERp38 PDIa famil 99.7 6.9E-17 1.5E-21 108.7 9.8 78 79-157 22-105 (105)
50 cd02952 TRP14_like Human TRX-r 99.7 1.4E-16 2.9E-21 110.8 10.2 98 24-157 5-118 (119)
51 cd02961 PDI_a_family Protein D 99.7 1.3E-16 2.8E-21 105.8 9.6 78 79-157 19-101 (101)
52 PRK14018 trifunctional thiored 99.7 5.2E-16 1.1E-20 131.0 13.6 103 56-159 36-171 (521)
53 PRK00293 dipZ thiol:disulfide 99.7 5E-16 1.1E-20 133.4 12.9 109 19-161 451-570 (571)
54 cd02959 ERp19 Endoplasmic reti 99.7 8.3E-17 1.8E-21 111.8 5.7 96 29-158 6-110 (117)
55 TIGR00411 redox_disulf_1 small 99.7 1.5E-15 3.3E-20 98.2 10.7 77 79-160 3-81 (82)
56 cd02982 PDI_b'_family Protein 99.7 7.8E-16 1.7E-20 103.7 8.6 84 76-160 13-102 (103)
57 cd02992 PDI_a_QSOX PDIa family 99.6 5.8E-16 1.2E-20 107.1 7.9 61 79-140 23-89 (114)
58 TIGR00385 dsbE periplasmic pro 99.6 4.3E-15 9.2E-20 109.7 11.5 103 56-161 38-171 (173)
59 PTZ00102 disulphide isomerase; 99.6 3.3E-15 7.2E-20 125.4 12.0 89 72-161 372-465 (477)
60 TIGR01130 ER_PDI_fam protein d 99.6 4.5E-15 9.8E-20 123.5 12.2 82 79-161 22-109 (462)
61 TIGR02187 GlrX_arch Glutaredox 99.6 5.1E-15 1.1E-19 112.9 11.3 82 79-161 23-111 (215)
62 PLN02309 5'-adenylylsulfate re 99.6 5.6E-15 1.2E-19 123.3 12.3 81 79-160 369-456 (457)
63 TIGR00424 APS_reduc 5'-adenyly 99.6 6.5E-15 1.4E-19 123.0 12.3 85 75-160 371-462 (463)
64 PRK03147 thiol-disulfide oxido 99.6 1.4E-14 3.1E-19 106.1 12.7 108 53-161 36-172 (173)
65 PTZ00102 disulphide isomerase; 99.6 6.9E-15 1.5E-19 123.4 12.4 81 79-161 53-138 (477)
66 KOG0190 Protein disulfide isom 99.6 1.8E-15 3.8E-20 126.2 8.5 98 63-161 30-132 (493)
67 PRK15412 thiol:disulfide inter 99.6 1.1E-14 2.5E-19 108.5 11.7 103 56-161 43-176 (185)
68 cd03010 TlpA_like_DsbE TlpA-li 99.6 6.8E-15 1.5E-19 102.9 9.6 94 58-153 3-126 (127)
69 PHA02125 thioredoxin-like prot 99.6 1.2E-14 2.6E-19 93.2 9.9 70 79-157 2-73 (75)
70 cd02955 SSP411 TRX domain, SSP 99.6 1.1E-14 2.3E-19 102.2 9.4 69 79-148 19-100 (124)
71 PF13098 Thioredoxin_2: Thiore 99.6 9.1E-15 2E-19 100.0 8.1 83 74-157 4-112 (112)
72 TIGR02738 TrbB type-F conjugat 99.6 4.1E-14 8.8E-19 102.6 11.4 84 76-161 51-153 (153)
73 cd03007 PDI_a_ERp29_N PDIa fam 99.6 1E-14 2.3E-19 100.8 6.6 81 76-160 19-115 (116)
74 cd02958 UAS UAS family; UAS is 99.5 7.6E-14 1.7E-18 96.2 10.7 99 29-161 4-111 (114)
75 cd03009 TryX_like_TryX_NRX Try 99.5 2.6E-14 5.6E-19 100.5 8.4 81 64-145 4-116 (131)
76 PF08534 Redoxin: Redoxin; In 99.5 7.5E-14 1.6E-18 99.7 10.4 91 57-148 5-134 (146)
77 TIGR02187 GlrX_arch Glutaredox 99.5 9.3E-14 2E-18 105.9 11.5 77 79-159 137-214 (215)
78 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 8.4E-14 1.8E-18 96.6 10.3 96 59-156 1-121 (123)
79 PTZ00056 glutathione peroxidas 99.5 9.7E-14 2.1E-18 104.8 10.5 106 56-161 17-178 (199)
80 TIGR00412 redox_disulf_2 small 99.5 1.5E-13 3.2E-18 88.4 9.7 71 79-157 2-75 (76)
81 cd02966 TlpA_like_family TlpA- 99.5 1.3E-13 2.9E-18 92.9 9.9 85 62-147 3-116 (116)
82 TIGR02661 MauD methylamine deh 99.5 3.7E-13 8.1E-18 100.7 13.2 106 53-160 47-178 (189)
83 KOG4277 Uncharacterized conser 99.5 2.6E-14 5.7E-19 112.0 7.0 83 77-160 45-131 (468)
84 PLN02399 phospholipid hydroper 99.5 2.4E-13 5.1E-18 104.9 12.1 109 54-162 75-235 (236)
85 PLN02919 haloacid dehalogenase 99.5 2.2E-13 4.7E-18 124.1 13.8 104 57-161 396-536 (1057)
86 cd03008 TryX_like_RdCVF Trypar 99.5 1.8E-13 3.8E-18 98.5 10.2 70 74-144 24-128 (146)
87 PRK13728 conjugal transfer pro 99.5 4.6E-13 9.9E-18 99.2 11.9 100 58-161 55-171 (181)
88 cd02967 mauD Methylamine utili 99.5 3.8E-13 8.2E-18 92.1 10.6 85 59-144 1-111 (114)
89 cd02973 TRX_GRX_like Thioredox 99.5 2.2E-13 4.7E-18 85.1 8.6 61 79-142 3-63 (67)
90 TIGR02740 TraF-like TraF-like 99.5 4.6E-13 1E-17 105.5 12.1 84 75-160 166-263 (271)
91 PF13905 Thioredoxin_8: Thiore 99.5 3E-13 6.6E-18 89.8 9.2 65 76-141 2-95 (95)
92 cd03026 AhpF_NTD_C TRX-GRX-lik 99.5 5.6E-13 1.2E-17 88.2 10.2 70 79-153 16-86 (89)
93 KOG0912 Thiol-disulfide isomer 99.5 7.6E-14 1.7E-18 109.3 6.9 87 74-161 12-106 (375)
94 TIGR01130 ER_PDI_fam protein d 99.5 3.3E-13 7.3E-18 112.3 10.9 87 72-161 361-454 (462)
95 PLN02412 probable glutathione 99.4 1.7E-12 3.6E-17 95.4 11.7 107 55-162 6-165 (167)
96 cd02964 TryX_like_family Trypa 99.4 7.9E-13 1.7E-17 93.3 8.8 69 76-145 18-116 (132)
97 cd00340 GSH_Peroxidase Glutath 99.4 1.7E-12 3.7E-17 93.8 8.8 98 58-156 2-151 (152)
98 cd02960 AGR Anterior Gradient 99.4 1E-12 2.3E-17 92.4 7.0 89 25-148 6-99 (130)
99 TIGR02540 gpx7 putative glutat 99.4 5E-12 1.1E-16 91.4 10.5 101 60-160 4-152 (153)
100 KOG0190 Protein disulfide isom 99.4 1.5E-12 3.3E-17 108.8 8.7 98 61-161 369-473 (493)
101 PRK11509 hydrogenase-1 operon 99.4 1E-11 2.2E-16 87.5 11.5 82 79-161 38-124 (132)
102 cd03012 TlpA_like_DipZ_like Tl 99.4 4.6E-12 1E-16 88.6 9.7 72 76-148 24-125 (126)
103 COG4232 Thiol:disulfide interc 99.4 2.3E-12 4.9E-17 108.9 9.0 114 12-161 445-568 (569)
104 smart00594 UAS UAS domain. 99.4 1.1E-11 2.4E-16 86.6 10.4 95 29-157 14-121 (122)
105 cd02969 PRX_like1 Peroxiredoxi 99.3 2.4E-11 5.3E-16 89.2 11.6 104 57-161 3-152 (171)
106 TIGR01626 ytfJ_HI0045 conserve 99.3 2.3E-11 5E-16 90.5 11.1 78 75-155 59-174 (184)
107 KOG0191 Thioredoxin/protein di 99.3 1.7E-11 3.6E-16 101.0 9.5 88 72-160 44-133 (383)
108 cd03014 PRX_Atyp2cys Peroxired 99.3 4.2E-11 9.2E-16 85.2 10.3 100 57-157 5-141 (143)
109 cd03017 PRX_BCP Peroxiredoxin 99.3 2.8E-11 6.1E-16 85.5 9.3 99 58-157 3-139 (140)
110 PRK00522 tpx lipid hydroperoxi 99.3 8.8E-11 1.9E-15 86.2 12.1 105 53-158 19-166 (167)
111 PTZ00256 glutathione peroxidas 99.3 3.7E-11 8E-16 89.5 10.0 105 57-162 19-182 (183)
112 PF00578 AhpC-TSA: AhpC/TSA fa 99.3 3.2E-11 6.9E-16 83.4 8.9 86 57-143 4-123 (124)
113 PF02114 Phosducin: Phosducin; 99.3 3.6E-11 7.9E-16 94.3 9.1 81 78-160 149-237 (265)
114 PF13899 Thioredoxin_7: Thiore 99.2 1.7E-11 3.7E-16 79.7 5.8 74 29-137 4-81 (82)
115 PRK09437 bcp thioredoxin-depen 99.2 3.7E-10 8E-15 81.4 11.2 103 56-159 8-151 (154)
116 TIGR02196 GlrX_YruB Glutaredox 99.2 2.4E-10 5.3E-15 71.6 8.5 69 79-158 2-74 (74)
117 COG0526 TrxA Thiol-disulfide i 99.1 5.3E-10 1.1E-14 74.5 8.2 82 75-157 32-120 (127)
118 KOG0191 Thioredoxin/protein di 99.1 2.7E-10 5.8E-15 93.8 8.1 101 60-161 146-252 (383)
119 cd03018 PRX_AhpE_like Peroxire 99.1 1.3E-09 2.9E-14 77.8 10.5 93 56-149 5-134 (149)
120 cd03015 PRX_Typ2cys Peroxiredo 99.1 1.7E-09 3.7E-14 79.7 11.2 102 58-160 5-156 (173)
121 cd02970 PRX_like2 Peroxiredoxi 99.1 1.3E-09 2.7E-14 77.6 9.8 58 58-115 2-66 (149)
122 KOG1672 ATP binding protein [P 99.1 5.7E-10 1.2E-14 82.5 7.6 69 79-148 88-156 (211)
123 PF06110 DUF953: Eukaryotic pr 99.0 1.4E-09 3E-14 75.5 8.0 100 25-158 2-118 (119)
124 TIGR03137 AhpC peroxiredoxin. 99.0 3.6E-09 7.8E-14 79.0 10.8 102 57-159 7-154 (187)
125 cd02971 PRX_family Peroxiredox 99.0 2.4E-09 5.1E-14 75.5 9.3 91 58-149 2-130 (140)
126 COG2143 Thioredoxin-related pr 99.0 4.6E-09 1E-13 75.3 10.5 79 79-158 46-146 (182)
127 PF14595 Thioredoxin_9: Thiore 99.0 1.3E-09 2.8E-14 76.9 7.7 80 79-160 45-128 (129)
128 TIGR02200 GlrX_actino Glutared 99.0 2.7E-09 5.9E-14 67.7 8.4 70 79-158 2-76 (77)
129 PRK10606 btuE putative glutath 99.0 2.1E-09 4.5E-14 80.2 8.7 58 57-115 4-66 (183)
130 KOG3414 Component of the U4/U6 99.0 8.7E-09 1.9E-13 71.2 10.3 102 22-159 5-118 (142)
131 cd02968 SCO SCO (an acronym fo 99.0 2.9E-09 6.4E-14 75.3 8.2 58 58-115 2-68 (142)
132 PF03190 Thioredox_DsbH: Prote 99.0 3.6E-09 7.9E-14 77.1 8.7 84 29-146 23-120 (163)
133 KOG0914 Thioredoxin-like prote 99.0 7.5E-10 1.6E-14 83.3 4.3 102 12-148 116-224 (265)
134 KOG1731 FAD-dependent sulfhydr 98.9 6.8E-10 1.5E-14 93.5 2.5 60 77-137 59-124 (606)
135 cd01659 TRX_superfamily Thiore 98.9 1.6E-08 3.5E-13 60.1 7.4 60 79-139 1-63 (69)
136 cd02991 UAS_ETEA UAS family, E 98.9 4.2E-08 9.2E-13 68.0 10.2 96 30-161 5-113 (116)
137 PRK13190 putative peroxiredoxi 98.9 3.7E-08 8.1E-13 74.5 10.8 102 57-160 7-153 (202)
138 PF13728 TraF: F plasmid trans 98.8 7.2E-08 1.6E-12 73.7 12.0 77 79-157 124-214 (215)
139 KOG2501 Thioredoxin, nucleored 98.8 1E-08 2.2E-13 73.9 6.5 68 76-144 34-131 (157)
140 PF13192 Thioredoxin_3: Thiore 98.8 7.7E-08 1.7E-12 61.6 9.4 69 83-158 6-76 (76)
141 PRK11200 grxA glutaredoxin 1; 98.8 7.1E-08 1.5E-12 62.9 9.2 75 79-161 3-83 (85)
142 KOG0911 Glutaredoxin-related p 98.8 6.3E-09 1.4E-13 78.7 3.9 80 79-159 21-100 (227)
143 PF11009 DUF2847: Protein of u 98.8 1.8E-07 3.9E-12 63.4 10.2 96 23-153 2-104 (105)
144 PRK13599 putative peroxiredoxi 98.7 1.4E-07 2.9E-12 72.1 10.6 103 57-160 7-155 (215)
145 PF02966 DIM1: Mitosis protein 98.7 2.5E-07 5.4E-12 64.7 10.6 101 22-159 2-115 (133)
146 cd02976 NrdH NrdH-redoxin (Nrd 98.7 1.3E-07 2.8E-12 58.9 8.5 68 79-157 2-73 (73)
147 PRK10382 alkyl hydroperoxide r 98.7 3.2E-07 7E-12 68.7 12.0 83 76-159 32-154 (187)
148 PRK13191 putative peroxiredoxi 98.7 2.9E-07 6.3E-12 70.3 12.0 105 55-160 10-160 (215)
149 PRK15000 peroxidase; Provision 98.7 2.5E-07 5.4E-12 69.9 11.5 102 57-159 7-160 (200)
150 TIGR02180 GRX_euk Glutaredoxin 98.7 7.2E-08 1.6E-12 62.1 6.9 59 79-142 1-65 (84)
151 TIGR02739 TraF type-F conjugat 98.7 6.9E-07 1.5E-11 69.8 12.4 80 79-160 154-247 (256)
152 cd03016 PRX_1cys Peroxiredoxin 98.6 5.1E-07 1.1E-11 68.3 10.8 101 58-160 5-153 (203)
153 PRK13189 peroxiredoxin; Provis 98.6 5.7E-07 1.2E-11 69.0 11.1 104 56-160 13-162 (222)
154 KOG3425 Uncharacterized conser 98.6 1.4E-07 3.1E-12 64.7 6.6 60 79-138 29-104 (128)
155 TIGR02183 GRXA Glutaredoxin, G 98.6 3.9E-07 8.5E-12 59.7 8.4 75 79-161 2-82 (86)
156 PTZ00137 2-Cys peroxiredoxin; 98.6 1.3E-06 2.9E-11 68.5 11.8 106 53-159 69-223 (261)
157 PRK13703 conjugal pilus assemb 98.6 1.9E-06 4E-11 67.1 12.4 80 79-160 147-240 (248)
158 PTZ00253 tryparedoxin peroxida 98.5 1.9E-06 4.2E-11 64.9 10.7 102 57-159 11-162 (199)
159 TIGR02194 GlrX_NrdH Glutaredox 98.5 8.7E-07 1.9E-11 55.9 7.5 67 80-156 2-71 (72)
160 PRK10877 protein disulfide iso 98.5 1.1E-06 2.4E-11 67.9 9.4 78 76-160 108-230 (232)
161 PRK10329 glutaredoxin-like pro 98.5 3.7E-06 8.1E-11 54.5 10.1 71 79-160 3-76 (81)
162 TIGR03143 AhpF_homolog putativ 98.5 1.7E-06 3.7E-11 74.6 10.8 77 76-157 476-554 (555)
163 COG1225 Bcp Peroxiredoxin [Pos 98.4 6.5E-06 1.4E-10 59.8 11.5 106 55-161 7-156 (157)
164 PF00462 Glutaredoxin: Glutare 98.4 1.9E-06 4.2E-11 52.3 7.3 56 79-142 1-60 (60)
165 KOG0913 Thiol-disulfide isomer 98.4 1.3E-07 2.8E-12 72.0 1.9 78 79-158 43-123 (248)
166 cd03023 DsbA_Com1_like DsbA fa 98.3 6E-06 1.3E-10 58.6 9.0 37 76-112 6-42 (154)
167 PRK15317 alkyl hydroperoxide r 98.3 9.5E-06 2.1E-10 69.4 10.8 76 79-159 120-196 (517)
168 cd03020 DsbA_DsbC_DsbG DsbA fa 98.3 5.1E-06 1.1E-10 62.4 7.9 74 76-157 78-197 (197)
169 cd03419 GRX_GRXh_1_2_like Glut 98.2 6.4E-06 1.4E-10 52.7 6.8 58 79-142 2-64 (82)
170 TIGR02189 GlrX-like_plant Glut 98.2 6E-06 1.3E-10 55.5 6.7 56 79-142 10-72 (99)
171 TIGR02190 GlrX-dom Glutaredoxi 98.2 9E-06 1.9E-10 52.2 7.2 56 79-142 10-68 (79)
172 PF05768 DUF836: Glutaredoxin- 98.2 1.8E-05 3.9E-10 51.1 8.5 75 79-158 2-81 (81)
173 cd02066 GRX_family Glutaredoxi 98.1 1.7E-05 3.7E-10 48.8 7.2 57 79-143 2-62 (72)
174 KOG3171 Conserved phosducin-li 98.1 1E-05 2.2E-10 61.2 7.1 106 19-160 137-250 (273)
175 PRK11657 dsbG disulfide isomer 98.1 2.5E-05 5.5E-10 61.0 9.5 81 76-158 118-249 (251)
176 PHA03050 glutaredoxin; Provisi 98.1 1.3E-05 2.8E-10 54.8 6.7 62 79-143 15-81 (108)
177 TIGR02181 GRX_bact Glutaredoxi 98.1 1.5E-05 3.3E-10 50.9 6.4 55 80-142 2-60 (79)
178 cd03029 GRX_hybridPRX5 Glutare 98.1 5.9E-05 1.3E-09 47.3 8.7 66 79-157 3-71 (72)
179 cd03027 GRX_DEP Glutaredoxin ( 98.1 3.2E-05 7E-10 48.7 7.4 57 79-143 3-63 (73)
180 cd03418 GRX_GRXb_1_3_like Glut 98.0 3.4E-05 7.4E-10 48.5 7.4 56 79-142 2-62 (75)
181 PF13848 Thioredoxin_6: Thiore 98.0 0.00026 5.6E-09 51.8 13.0 89 70-159 89-184 (184)
182 PF01216 Calsequestrin: Calseq 98.0 0.00021 4.6E-09 57.7 13.1 116 6-161 20-144 (383)
183 TIGR03140 AhpF alkyl hydropero 98.0 6.1E-05 1.3E-09 64.4 10.9 76 79-159 121-197 (515)
184 PF13462 Thioredoxin_4: Thiore 98.0 7.7E-05 1.7E-09 53.5 9.3 78 76-159 13-162 (162)
185 KOG3170 Conserved phosducin-li 97.9 3.4E-05 7.4E-10 57.8 6.5 105 16-159 87-199 (240)
186 cd03019 DsbA_DsbA DsbA family, 97.9 9E-05 2E-09 54.1 8.5 36 75-110 15-51 (178)
187 TIGR00365 monothiol glutaredox 97.9 0.00013 2.7E-09 48.9 7.7 50 85-142 25-78 (97)
188 COG0695 GrxC Glutaredoxin and 97.8 0.00017 3.7E-09 46.6 8.0 66 79-155 3-75 (80)
189 PF07449 HyaE: Hydrogenase-1 e 97.8 0.00011 2.3E-09 50.1 6.4 68 79-148 30-101 (107)
190 cd03028 GRX_PICOT_like Glutare 97.7 0.00023 5.1E-09 46.8 7.6 50 85-142 21-74 (90)
191 PRK10638 glutaredoxin 3; Provi 97.7 0.00026 5.6E-09 45.7 7.2 57 79-143 4-64 (83)
192 KOG2603 Oligosaccharyltransfer 97.7 0.0004 8.7E-09 55.3 9.0 82 79-161 64-166 (331)
193 PRK10954 periplasmic protein d 97.7 0.00034 7.4E-09 53.0 8.4 38 76-113 38-79 (207)
194 cd02981 PDI_b_family Protein D 97.6 0.00084 1.8E-08 44.1 9.1 73 79-159 21-96 (97)
195 cd03013 PRX5_like Peroxiredoxi 97.6 0.00067 1.5E-08 49.1 8.8 91 57-148 4-140 (155)
196 PF00837 T4_deiodinase: Iodoth 97.6 0.0013 2.8E-08 50.8 10.5 100 58-160 79-236 (237)
197 COG1331 Highly conserved prote 97.6 0.00021 4.5E-09 62.2 6.6 79 32-144 33-124 (667)
198 TIGR03143 AhpF_homolog putativ 97.5 0.00079 1.7E-08 58.2 10.0 81 79-160 370-453 (555)
199 PRK10824 glutaredoxin-4; Provi 97.5 0.00044 9.5E-09 47.8 6.7 51 85-143 28-82 (115)
200 cd02983 P5_C P5 family, C-term 97.4 0.0016 3.4E-08 45.9 8.1 69 92-161 41-115 (130)
201 cd03073 PDI_b'_ERp72_ERp57 PDI 97.3 0.0025 5.4E-08 43.7 8.1 72 88-160 31-110 (111)
202 cd03072 PDI_b'_ERp44 PDIb' fam 97.2 0.0032 7E-08 43.1 8.1 81 79-162 20-109 (111)
203 cd02972 DsbA_family DsbA famil 97.2 0.0018 3.8E-08 41.7 6.4 57 79-136 1-90 (98)
204 PRK12759 bifunctional gluaredo 97.2 0.0016 3.5E-08 54.4 7.3 56 79-142 4-71 (410)
205 PTZ00062 glutaredoxin; Provisi 97.1 0.0041 9E-08 47.2 8.5 50 85-142 126-179 (204)
206 KOG1752 Glutaredoxin and relat 97.1 0.0034 7.4E-08 42.6 6.8 58 79-142 16-78 (104)
207 COG1999 Uncharacterized protei 96.9 0.033 7.2E-07 42.3 12.0 104 57-161 46-204 (207)
208 COG0386 BtuE Glutathione perox 96.7 0.023 4.9E-07 41.1 8.9 103 59-162 6-161 (162)
209 PF07912 ERp29_N: ERp29, N-ter 96.5 0.018 3.9E-07 40.1 7.0 83 76-160 22-118 (126)
210 PF02630 SCO1-SenC: SCO1/SenC; 96.4 0.015 3.1E-07 42.9 6.8 62 54-115 28-97 (174)
211 PF13848 Thioredoxin_6: Thiore 96.4 0.038 8.2E-07 40.2 8.9 65 92-161 7-75 (184)
212 COG1651 DsbG Protein-disulfide 96.4 0.034 7.4E-07 42.8 8.8 34 76-109 85-118 (244)
213 KOG0855 Alkyl hydroperoxide re 96.3 0.074 1.6E-06 39.1 9.7 101 45-149 56-196 (211)
214 cd03066 PDI_b_Calsequestrin_mi 96.3 0.084 1.8E-06 35.2 9.4 75 79-161 23-101 (102)
215 cd02990 UAS_FAF1 UAS family, F 96.2 0.21 4.5E-06 35.5 11.2 96 30-161 5-133 (136)
216 KOG2792 Putative cytochrome C 96.1 0.049 1.1E-06 42.6 8.4 104 57-161 118-275 (280)
217 cd03031 GRX_GRX_like Glutaredo 95.9 0.058 1.3E-06 38.8 7.3 58 79-143 2-72 (147)
218 COG4545 Glutaredoxin-related p 95.9 0.033 7.2E-07 35.4 5.2 57 80-143 5-77 (85)
219 PF01323 DSBA: DSBA-like thior 95.8 0.16 3.5E-06 37.2 9.9 34 79-112 2-37 (193)
220 PF13743 Thioredoxin_5: Thiore 95.6 0.045 9.8E-07 40.4 6.1 26 81-106 2-27 (176)
221 cd02977 ArsC_family Arsenate R 95.5 0.011 2.3E-07 39.8 2.2 75 80-160 2-86 (105)
222 KOG1651 Glutathione peroxidase 95.3 0.13 2.8E-06 37.7 7.3 105 57-161 13-169 (171)
223 cd03041 GST_N_2GST_N GST_N fam 95.0 0.36 7.8E-06 30.2 8.3 70 80-160 3-76 (77)
224 cd03036 ArsC_like Arsenate Red 95.0 0.02 4.3E-07 39.1 2.4 75 80-160 2-87 (111)
225 cd02978 KaiB_like KaiB-like fa 94.8 0.11 2.4E-06 32.8 5.3 56 79-135 4-61 (72)
226 PF06764 DUF1223: Protein of u 94.4 0.43 9.2E-06 36.2 8.5 78 79-161 2-98 (202)
227 PF06053 DUF929: Domain of unk 94.3 0.15 3.2E-06 39.9 5.9 61 69-136 52-112 (249)
228 COG0450 AhpC Peroxiredoxin [Po 94.3 1.4 3E-05 33.2 10.8 104 56-160 7-160 (194)
229 cd03060 GST_N_Omega_like GST_N 94.2 0.36 7.8E-06 29.6 6.7 57 81-142 3-60 (71)
230 KOG2507 Ubiquitin regulatory p 94.0 0.46 1E-05 39.8 8.5 81 79-160 22-110 (506)
231 KOG2640 Thioredoxin [Function 93.9 0.021 4.5E-07 45.7 0.6 83 77-161 78-162 (319)
232 PF09673 TrbC_Ftype: Type-F co 93.1 0.95 2.1E-05 31.0 7.8 25 113-138 56-80 (113)
233 TIGR02742 TrbC_Ftype type-F co 93.1 0.98 2.1E-05 31.8 7.9 43 115-158 58-112 (130)
234 PRK01655 spxA transcriptional 92.9 0.21 4.5E-06 35.1 4.3 34 79-117 2-35 (131)
235 TIGR01617 arsC_related transcr 92.7 0.26 5.6E-06 33.8 4.5 34 80-118 2-35 (117)
236 PHA03075 glutaredoxin-like pro 92.3 0.24 5.3E-06 34.1 3.9 29 76-104 2-30 (123)
237 cd03035 ArsC_Yffb Arsenate Red 92.0 0.24 5.3E-06 33.4 3.6 33 80-117 2-34 (105)
238 cd03040 GST_N_mPGES2 GST_N fam 91.9 1.9 4.2E-05 26.6 8.9 71 79-161 2-76 (77)
239 TIGR02654 circ_KaiB circadian 91.8 0.58 1.3E-05 30.6 5.0 68 79-148 6-75 (87)
240 cd03037 GST_N_GRX2 GST_N famil 91.3 1.1 2.3E-05 27.4 5.8 56 81-141 3-58 (71)
241 PF00255 GSHPx: Glutathione pe 91.1 1.3 2.8E-05 30.2 6.5 55 60-115 3-62 (108)
242 PRK09301 circadian clock prote 91.1 0.74 1.6E-05 31.1 5.1 75 79-155 9-87 (103)
243 cd03069 PDI_b_ERp57 PDIb famil 91.0 3.3 7.1E-05 27.5 8.7 73 79-160 22-103 (104)
244 cd03051 GST_N_GTT2_like GST_N 90.7 0.59 1.3E-05 28.4 4.2 57 81-142 3-63 (74)
245 COG5429 Uncharacterized secret 90.3 1 2.2E-05 34.9 5.9 80 77-160 43-140 (261)
246 PRK15317 alkyl hydroperoxide r 90.2 3.5 7.5E-05 35.4 9.8 70 79-160 22-93 (517)
247 cd03032 ArsC_Spx Arsenate Redu 90.1 0.65 1.4E-05 31.7 4.4 34 79-117 2-35 (115)
248 COG3019 Predicted metal-bindin 90.0 2.4 5.3E-05 30.2 7.1 71 79-158 28-101 (149)
249 PRK12559 transcriptional regul 89.9 0.56 1.2E-05 33.0 4.0 32 79-115 2-33 (131)
250 cd03059 GST_N_SspA GST_N famil 89.6 1.7 3.6E-05 26.4 5.6 69 80-159 2-71 (73)
251 cd00570 GST_N_family Glutathio 89.6 0.39 8.5E-06 28.2 2.7 56 81-142 3-60 (71)
252 TIGR03140 AhpF alkyl hydropero 89.6 4.3 9.3E-05 34.9 9.9 71 79-160 22-94 (515)
253 cd02974 AhpF_NTD_N Alkyl hydro 89.6 4.4 9.5E-05 26.8 9.7 68 79-159 23-92 (94)
254 cd03045 GST_N_Delta_Epsilon GS 89.2 2.7 5.9E-05 25.5 6.4 56 81-142 3-62 (74)
255 cd03067 PDI_b_PDIR_N PDIb fami 89.1 5.3 0.00011 27.0 8.5 78 79-158 23-109 (112)
256 PF13778 DUF4174: Domain of un 89.1 5.6 0.00012 27.3 9.1 80 79-159 13-110 (118)
257 cd03068 PDI_b_ERp72 PDIb famil 88.1 6.1 0.00013 26.5 9.8 74 79-160 23-107 (107)
258 PRK13344 spxA transcriptional 88.0 1 2.3E-05 31.6 4.3 32 79-115 2-33 (132)
259 PF07689 KaiB: KaiB domain; I 87.2 0.28 6E-06 31.8 0.9 52 82-134 3-56 (82)
260 PF13417 GST_N_3: Glutathione 87.0 5.2 0.00011 24.6 9.5 68 82-160 2-70 (75)
261 COG2761 FrnE Predicted dithiol 86.6 1.5 3.4E-05 33.7 4.8 38 119-161 175-213 (225)
262 COG3531 Predicted protein-disu 85.6 1.8 3.9E-05 32.7 4.5 42 119-161 165-209 (212)
263 PF06953 ArsD: Arsenical resis 85.2 6.5 0.00014 27.4 6.9 51 105-158 39-99 (123)
264 COG0278 Glutaredoxin-related p 84.4 6.2 0.00014 26.6 6.2 56 84-143 27-83 (105)
265 COG2077 Tpx Peroxiredoxin [Pos 83.7 8.2 0.00018 28.0 7.0 63 53-115 19-85 (158)
266 PF04592 SelP_N: Selenoprotein 83.6 6.6 0.00014 30.5 7.0 38 77-114 28-70 (238)
267 cd03055 GST_N_Omega GST_N fami 83.6 4.6 0.0001 25.9 5.4 59 79-142 19-78 (89)
268 cd03024 DsbA_FrnE DsbA family, 82.0 1.8 4E-05 31.8 3.4 36 117-157 164-200 (201)
269 cd03056 GST_N_4 GST_N family, 80.1 10 0.00022 22.6 6.5 56 81-142 3-62 (73)
270 COG3634 AhpF Alkyl hydroperoxi 77.5 14 0.00031 30.8 7.3 75 79-158 120-195 (520)
271 cd03052 GST_N_GDAP1 GST_N fami 77.1 14 0.00031 22.6 6.3 57 80-142 2-62 (73)
272 cd03033 ArsC_15kD Arsenate Red 76.1 4.8 0.00011 27.4 3.8 31 79-114 2-32 (113)
273 PF09695 YtfJ_HI0045: Bacteria 76.0 28 0.0006 25.4 8.2 63 92-158 90-155 (160)
274 cd03022 DsbA_HCCA_Iso DsbA fam 74.2 4.6 0.0001 29.3 3.5 34 118-157 157-191 (192)
275 KOG0852 Alkyl hydroperoxide re 72.4 36 0.00077 25.5 7.6 95 57-158 22-158 (196)
276 PRK13730 conjugal transfer pil 69.3 10 0.00022 28.9 4.3 33 117-151 151-184 (212)
277 cd03025 DsbA_FrnE_like DsbA fa 69.2 7.9 0.00017 28.1 3.8 27 79-105 3-29 (193)
278 KOG0911 Glutaredoxin-related p 68.6 19 0.00042 27.7 5.8 55 84-143 151-206 (227)
279 TIGR00014 arsC arsenate reduct 68.5 8.4 0.00018 26.2 3.6 31 80-115 2-32 (114)
280 cd03034 ArsC_ArsC Arsenate Red 67.2 9.4 0.0002 25.8 3.6 31 80-115 2-32 (112)
281 COG5494 Predicted thioredoxin/ 66.0 42 0.0009 25.9 7.0 72 80-159 14-86 (265)
282 PF04134 DUF393: Protein of un 65.3 9.5 0.00021 25.5 3.3 57 82-140 2-61 (114)
283 cd03061 GST_N_CLIC GST_N famil 65.2 36 0.00078 22.3 6.0 65 85-160 20-85 (91)
284 KOG2244 Highly conserved prote 63.2 7 0.00015 34.2 2.7 63 79-142 116-191 (786)
285 PRK00366 ispG 4-hydroxy-3-meth 62.6 13 0.00028 30.7 4.0 40 121-160 316-356 (360)
286 PRK09481 sspA stringent starva 60.3 41 0.00089 24.9 6.3 58 79-142 11-69 (211)
287 COG3011 Predicted thiol-disulf 58.4 56 0.0012 23.3 6.2 67 76-143 7-74 (137)
288 cd03030 GRX_SH3BGR Glutaredoxi 57.7 41 0.00089 22.0 5.2 35 105-142 29-71 (92)
289 PF07315 DUF1462: Protein of u 57.2 53 0.0012 21.6 7.1 67 86-157 8-92 (93)
290 TIGR01616 nitro_assoc nitrogen 57.0 22 0.00048 24.7 4.0 31 79-114 3-33 (126)
291 PF03960 ArsC: ArsC family; I 56.2 24 0.00052 23.5 4.0 31 82-117 1-31 (110)
292 cd03053 GST_N_Phi GST_N family 55.0 44 0.00096 20.0 6.6 58 79-142 2-63 (76)
293 PRK10853 putative reductase; P 54.9 20 0.00043 24.6 3.5 31 79-114 2-32 (118)
294 cd03049 GST_N_3 GST_N family, 50.2 54 0.0012 19.6 5.8 59 81-142 3-62 (73)
295 COG1393 ArsC Arsenate reductas 50.1 20 0.00043 24.6 2.9 22 79-100 3-24 (117)
296 COG0821 gcpE 1-hydroxy-2-methy 49.8 29 0.00062 28.5 4.1 76 86-161 263-351 (361)
297 PRK10026 arsenate reductase; P 48.9 32 0.0007 24.5 3.9 31 79-114 4-34 (141)
298 PF08806 Sep15_SelM: Sep15/Sel 47.1 28 0.00061 22.1 3.0 33 128-160 40-75 (78)
299 cd03025 DsbA_FrnE_like DsbA fa 46.7 29 0.00062 25.1 3.5 22 118-140 159-180 (193)
300 PF14424 Toxin-deaminase: The 45.5 77 0.0017 22.3 5.3 31 80-113 101-131 (133)
301 PF09822 ABC_transp_aux: ABC-t 45.1 1.4E+02 0.0031 23.1 11.4 41 88-129 43-88 (271)
302 cd03054 GST_N_Metaxin GST_N fa 44.1 69 0.0015 19.1 5.0 47 84-142 13-59 (72)
303 PF00352 TBP: Transcription fa 43.5 43 0.00094 21.4 3.6 72 79-160 6-78 (86)
304 COG3411 Ferredoxin [Energy pro 41.6 74 0.0016 19.5 4.1 29 130-161 17-45 (64)
305 PF04551 GcpE: GcpE protein; 41.3 33 0.00071 28.4 3.2 73 87-160 271-358 (359)
306 cd03021 DsbA_GSTK DsbA family, 41.2 25 0.00054 26.2 2.5 37 119-157 170-208 (209)
307 PF07700 HNOB: Heme NO binding 41.1 1.1E+02 0.0024 22.1 5.8 49 58-113 117-167 (171)
308 PF07511 DUF1525: Protein of u 39.7 86 0.0019 21.6 4.6 37 120-161 75-112 (114)
309 cd07973 Spt4 Transcription elo 37.2 42 0.00092 22.4 2.8 70 81-159 17-93 (98)
310 PF11287 DUF3088: Protein of u 37.0 68 0.0015 22.0 3.8 74 86-159 23-105 (112)
311 KOG1364 Predicted ubiquitin re 37.0 46 0.00099 27.4 3.4 54 107-161 133-189 (356)
312 cd03062 TRX_Fd_Sucrase TRX-lik 36.8 77 0.0017 20.8 4.0 31 128-161 51-83 (97)
313 PRK10387 glutaredoxin 2; Provi 36.0 1.1E+02 0.0024 22.3 5.3 56 82-142 4-59 (210)
314 PF05176 ATP-synt_10: ATP10 pr 35.5 2.2E+02 0.0047 22.3 8.9 107 51-158 94-247 (252)
315 KOG4277 Uncharacterized conser 34.1 2.4E+02 0.0053 23.1 7.0 72 86-159 266-349 (468)
316 cd03074 PDI_b'_Calsequestrin_C 32.9 1.6E+02 0.0036 20.2 9.7 82 79-160 24-119 (120)
317 PRK11752 putative S-transferas 32.8 1.8E+02 0.0039 22.6 6.2 53 82-135 47-106 (264)
318 TIGR02182 GRXB Glutaredoxin, G 32.1 1.8E+02 0.0038 21.6 5.8 54 82-142 3-58 (209)
319 PRK01045 ispH 4-hydroxy-3-meth 32.0 2.3E+02 0.0049 22.9 6.7 76 80-160 187-278 (298)
320 PF10865 DUF2703: Domain of un 31.7 1.5E+02 0.0033 20.5 5.0 56 85-146 13-76 (120)
321 cd03058 GST_N_Tau GST_N family 31.7 1.2E+02 0.0025 18.1 5.8 68 81-159 3-72 (74)
322 COG2761 FrnE Predicted dithiol 31.4 1.3E+02 0.0029 23.2 5.0 28 79-106 8-35 (225)
323 PRK13669 hypothetical protein; 30.3 1E+02 0.0023 19.7 3.6 54 96-161 19-72 (78)
324 KOG0868 Glutathione S-transfer 29.8 22 0.00047 26.7 0.5 61 75-143 4-69 (217)
325 cd03044 GST_N_EF1Bgamma GST_N 29.7 83 0.0018 19.0 3.1 56 82-142 4-62 (75)
326 COG5309 Exo-beta-1,3-glucanase 29.6 1.3E+02 0.0029 24.1 4.8 78 79-161 78-162 (305)
327 TIGR00216 ispH_lytB (E)-4-hydr 29.2 2.2E+02 0.0047 22.8 6.1 76 80-160 185-276 (280)
328 KOG1422 Intracellular Cl- chan 28.8 2.7E+02 0.0059 21.4 7.0 65 85-160 19-84 (221)
329 cd06353 PBP1_BmpA_Med_like Per 27.1 1.7E+02 0.0036 22.6 5.1 26 89-114 64-89 (258)
330 cd03050 GST_N_Theta GST_N fami 26.9 1.5E+02 0.0032 17.7 6.6 56 81-142 3-62 (76)
331 PF07293 DUF1450: Protein of u 26.1 1.3E+02 0.0029 19.1 3.6 56 94-161 17-72 (78)
332 PF13409 GST_N_2: Glutathione 25.9 1.5E+02 0.0033 17.6 4.9 63 86-158 1-68 (70)
333 TIGR03757 conj_TIGR03757 integ 25.5 1.9E+02 0.0041 19.8 4.5 34 121-159 77-111 (113)
334 TIGR00612 ispG_gcpE 1-hydroxy- 25.2 1.2E+02 0.0027 24.9 4.1 25 122-147 308-334 (346)
335 TIGR00862 O-ClC intracellular 25.2 3.2E+02 0.007 21.0 6.4 52 85-142 17-69 (236)
336 cd05863 Ig2_VEGFR-3 Second imm 25.0 55 0.0012 19.8 1.7 15 129-143 11-25 (67)
337 PF02401 LYTB: LytB protein; 24.1 75 0.0016 25.4 2.6 75 79-160 185-277 (281)
338 PRK15113 glutathione S-transfe 24.1 1.9E+02 0.0042 21.3 4.8 58 79-142 6-69 (214)
339 cd04518 TBP_archaea archaeal T 23.6 1.7E+02 0.0037 21.6 4.3 27 132-160 140-167 (174)
340 PRK08573 phosphomethylpyrimidi 23.5 4.5E+02 0.0099 22.2 7.8 56 106-161 376-447 (448)
341 COG1744 Med Uncharacterized AB 23.5 1.6E+02 0.0035 24.1 4.5 23 92-114 107-129 (345)
342 PF06122 TraH: Conjugative rel 22.6 30 0.00065 28.5 0.1 67 5-105 48-115 (361)
343 cd00652 TBP_TLF TATA box bindi 22.4 1.8E+02 0.0039 21.4 4.2 28 132-161 141-169 (174)
344 PF06858 NOG1: Nucleolar GTP-b 22.3 1.9E+02 0.0041 17.4 4.7 32 79-110 17-51 (58)
345 cd03039 GST_N_Sigma_like GST_N 21.5 1.4E+02 0.003 17.6 3.0 55 82-142 4-60 (72)
346 cd05855 Ig_TrkB_d5 Fifth domai 21.0 61 0.0013 20.4 1.3 14 130-143 12-25 (79)
347 COG2101 SPT15 TATA-box binding 20.9 1.7E+02 0.0036 21.8 3.7 28 132-161 55-83 (185)
348 PRK00394 transcription factor; 20.8 2.1E+02 0.0045 21.2 4.3 27 132-160 141-168 (179)
349 PF14421 LmjF365940-deam: A di 20.6 1.2E+02 0.0027 22.7 3.0 29 86-117 156-184 (193)
350 PF10262 Rdx: Rdx family; Int 20.4 2.2E+02 0.0048 17.5 7.9 63 85-160 9-76 (76)
No 1
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.4e-25 Score=149.83 Aligned_cols=103 Identities=45% Similarity=0.785 Sum_probs=95.5
Q ss_pred EeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHHHh
Q 031271 24 ELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAM 103 (162)
Q Consensus 24 ~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~ 103 (162)
.+.+.++|+.....+..+++++ +++|||+||+||+.+.|.+++++.+
T Consensus 3 ~v~~~~~~~~~~~~~~~~~kli---------------------------------VvdF~a~wCgPCk~i~P~~~~La~~ 49 (106)
T KOG0907|consen 3 EVETVSDLDLVLSAAEAGDKLV---------------------------------VVDFYATWCGPCKAIAPKFEKLAEK 49 (106)
T ss_pred eEEehhhHHHHHHHhhCCCCeE---------------------------------EEEEECCCCcchhhhhhHHHHHHHH
Confidence 3456677888888877778998 9999999999999999999999999
Q ss_pred cCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHH
Q 031271 104 YTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR 160 (162)
Q Consensus 104 ~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~ 160 (162)
|+++.|++||+|++.++++.|+| ..+|||++|++|+.+.++.|.++++|++.+.++
T Consensus 50 y~~v~Flkvdvde~~~~~~~~~V-~~~PTf~f~k~g~~~~~~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 50 YPDVVFLKVDVDELEEVAKEFNV-KAMPTFVFYKGGEEVDEVVGANKAELEKKIAKH 105 (106)
T ss_pred CCCCEEEEEecccCHhHHHhcCc-eEeeEEEEEECCEEEEEEecCCHHHHHHHHHhc
Confidence 99999999999999999999999 999999999999999999999999999998875
No 2
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.8e-25 Score=156.66 Aligned_cols=83 Identities=33% Similarity=0.755 Sum_probs=80.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK 156 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~ 156 (162)
+|+|||+||+||+.+.|.|+++..+|.+ +.|+++|+|++++++.+|+| ..+||+++|+||+.++++.|. +.+.|+++
T Consensus 65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I-~avPtvlvfknGe~~d~~vG~~~~~~l~~~ 143 (150)
T KOG0910|consen 65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEI-SAVPTVLVFKNGEKVDRFVGAVPKEQLRSL 143 (150)
T ss_pred EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcce-eeeeEEEEEECCEEeeeecccCCHHHHHHH
Confidence 9999999999999999999999999988 99999999999999999999 999999999999999999999 89999999
Q ss_pred HHHHhC
Q 031271 157 TEKRRN 162 (162)
Q Consensus 157 l~~~~~ 162 (162)
|+++++
T Consensus 144 i~k~l~ 149 (150)
T KOG0910|consen 144 IKKFLK 149 (150)
T ss_pred HHHHhc
Confidence 998763
No 3
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.90 E-value=6.1e-23 Score=139.53 Aligned_cols=98 Identities=23% Similarity=0.306 Sum_probs=88.3
Q ss_pred chhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC
Q 031271 27 SKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD 106 (162)
Q Consensus 27 s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~ 106 (162)
+.++|++.+.++ .++++ +|+||++||++|+.+.|.|+++++++++
T Consensus 2 ~~~~~~~~i~~~--~~k~v---------------------------------vv~F~a~wC~~C~~~~p~l~~la~~~~~ 46 (103)
T cd02985 2 SVEELDEALKKA--KGRLV---------------------------------VLEFALKHSGPSVKIYPTMVKLSRTCND 46 (103)
T ss_pred CHHHHHHHHHHc--CCCEE---------------------------------EEEEECCCCHhHHHHhHHHHHHHHHCCC
Confidence 567888888653 37778 9999999999999999999999999988
Q ss_pred cEEEEEECCCcH---HHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHH
Q 031271 107 VQFIKIDVDWLP---EAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR 160 (162)
Q Consensus 107 v~f~~vd~d~~~---~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~ 160 (162)
+.|+.||+|+++ +++++|+| .++||+++|++|+.+.++.|..+.+|++.+..+
T Consensus 47 v~~~~vd~d~~~~~~~l~~~~~V-~~~Pt~~~~~~G~~v~~~~G~~~~~l~~~~~~~ 102 (103)
T cd02985 47 VVFLLVNGDENDSTMELCRREKI-IEVPHFLFYKDGEKIHEEEGIGPDELIGDVLYY 102 (103)
T ss_pred CEEEEEECCCChHHHHHHHHcCC-CcCCEEEEEeCCeEEEEEeCCCHHHHHHHHHhc
Confidence 999999999874 79999999 999999999999999999999999998887654
No 4
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.89 E-value=6.1e-23 Score=141.37 Aligned_cols=81 Identities=22% Similarity=0.357 Sum_probs=73.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-C-------
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-K------- 149 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~------- 149 (162)
+|+|||+||++|+.|.|.|++++.++++ +.|++||+|++++++++|+| .++||+++|++|+.+.+..|. +
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V-~~iPTf~~fk~G~~v~~~~G~~~~~~~~~~ 96 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYEL-YDPPTVMFFFRNKHMKIDLGTGNNNKINWV 96 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCC-CCCCEEEEEECCEEEEEEcCCCCCceEEEe
Confidence 9999999999999999999999999998 79999999999999999999 999999999999999999875 3
Q ss_pred ---HHHHHHHHHHH
Q 031271 150 ---KDELQMKTEKR 160 (162)
Q Consensus 150 ---~~~l~~~l~~~ 160 (162)
.+.+++.++.+
T Consensus 97 ~~~~~~~~~~~~~~ 110 (114)
T cd02954 97 FEDKQEFIDIIETI 110 (114)
T ss_pred cCcHHHHHHHHHHH
Confidence 45566665543
No 5
>PHA02278 thioredoxin-like protein
Probab=99.89 E-value=3.2e-22 Score=136.11 Aligned_cols=77 Identities=19% Similarity=0.350 Sum_probs=70.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCc----HHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWL----PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDE 152 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~----~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~ 152 (162)
+|+|||+||++|+.+.|.++++++++. .+.|+++|+|.+ ++++++|+| .++||+++|++|+.+.++.|. +.+.
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I-~~iPT~i~fk~G~~v~~~~G~~~~~~ 96 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI-MSTPVLIGYKDGQLVKKYEDQVTPMQ 96 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC-ccccEEEEEECCEEEEEEeCCCCHHH
Confidence 999999999999999999999998754 378999999976 689999999 999999999999999999997 7877
Q ss_pred HHHH
Q 031271 153 LQMK 156 (162)
Q Consensus 153 l~~~ 156 (162)
|.++
T Consensus 97 l~~~ 100 (103)
T PHA02278 97 LQEL 100 (103)
T ss_pred HHhh
Confidence 7654
No 6
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.88 E-value=7.5e-22 Score=133.87 Aligned_cols=80 Identities=25% Similarity=0.471 Sum_probs=75.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMK 156 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~ 156 (162)
+|+|||+||++|+.+.|.++++++.+++ +.|+.+|+| +++++++|+| ..+||+++|++|+.+.+..|.+++.|+++
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~G~~~~~~~~~ 98 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRG-KCEPTFLFYKNGELVAVIRGANAPLLNKT 98 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCC-CcCcEEEEEECCEEEEEEecCChHHHHHH
Confidence 9999999999999999999999999964 789999999 7899999999 99999999999999999999999999999
Q ss_pred HHHH
Q 031271 157 TEKR 160 (162)
Q Consensus 157 l~~~ 160 (162)
|+++
T Consensus 99 i~~~ 102 (102)
T cd02948 99 ITEL 102 (102)
T ss_pred HhhC
Confidence 8763
No 7
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.88 E-value=6.5e-22 Score=141.08 Aligned_cols=105 Identities=21% Similarity=0.278 Sum_probs=92.6
Q ss_pred ceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHH
Q 031271 21 LVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDF 100 (162)
Q Consensus 21 ~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~ 100 (162)
.+.++.|.++|++.+... +++++ +|.|||+||++|+.+.|.|+++
T Consensus 4 ~l~~l~s~~e~d~~I~~~--~~~lV---------------------------------VvdF~A~WCgpCk~m~p~l~~l 48 (142)
T PLN00410 4 LLPHLHSGWAVDQAILAE--EERLV---------------------------------VIRFGHDWDETCMQMDEVLASV 48 (142)
T ss_pred hHhhhCCHHHHHHHHHhc--CCCEE---------------------------------EEEEECCCChhHHHHHHHHHHH
Confidence 456788999999999853 57888 9999999999999999999999
Q ss_pred HHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEE-EEcCCe-EEEEEcC--------C-CHHHHHHHHHHHh
Q 031271 101 AAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFV-LVKRGK-EIDRVVG--------A-KKDELQMKTEKRR 161 (162)
Q Consensus 101 ~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv-~~~~Gk-~i~~~~g--------~-~~~~l~~~l~~~~ 161 (162)
++++++ +.|++||+|++++++..|+| ...|+++ +|++|+ .+++..| . +.++|++.++.++
T Consensus 49 a~~~~~~~~~~kVDVDe~~dla~~y~I-~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 49 AETIKNFAVIYLVDITEVPDFNTMYEL-YDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred HHHcCCceEEEEEECCCCHHHHHHcCc-cCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 999998 88899999999999999999 8777655 889998 9999999 5 7788888887654
No 8
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.88 E-value=2.7e-21 Score=129.88 Aligned_cols=81 Identities=36% Similarity=0.716 Sum_probs=79.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK 156 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~ 156 (162)
+|+||++||++|+.+.|.|+++++.++ ++.|+.||+++++.++++|++ ..+||+++|++|+...++.|. +.+.|.++
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 99 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGV-KSVPTIIFFKNGKEVKRYNGPRNAESLIEF 99 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTC-SSSSEEEEEETTEEEEEEESSSSHHHHHHH
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCC-CCCCEEEEEECCcEEEEEECCCCHHHHHHH
Confidence 999999999999999999999999998 699999999999999999999 999999999999999999999 99999999
Q ss_pred HHHH
Q 031271 157 TEKR 160 (162)
Q Consensus 157 l~~~ 160 (162)
|++|
T Consensus 100 i~~~ 103 (103)
T PF00085_consen 100 IEKH 103 (103)
T ss_dssp HHHH
T ss_pred HHcC
Confidence 9986
No 9
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.9e-22 Score=151.56 Aligned_cols=105 Identities=34% Similarity=0.661 Sum_probs=100.4
Q ss_pred ceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHH
Q 031271 21 LVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDF 100 (162)
Q Consensus 21 ~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~ 100 (162)
.|+.|+++.+|+..|..+ +.+++ +|+|+|+||+||++..|.++.+
T Consensus 2 ~Vi~v~~d~df~~~ls~a--g~k~v---------------------------------~Vdfta~wCGPCk~IaP~Fs~l 46 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAA--GGKLV---------------------------------VVDFTASWCGPCKRIAPIFSDL 46 (288)
T ss_pred CeEEecCcHHHHHhhhcc--CceEE---------------------------------EEEEEecccchHHhhhhHHHHh
Confidence 488999999999999864 68889 9999999999999999999999
Q ss_pred HHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271 101 AAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR 161 (162)
Q Consensus 101 ~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~ 161 (162)
+.+|++..|++||+|++...+..+|| ...|||++|+||+.++++.|.++..|++.+.+|.
T Consensus 47 ankYp~aVFlkVdVd~c~~taa~~gV-~amPTFiff~ng~kid~~qGAd~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 47 ANKYPGAVFLKVDVDECRGTAATNGV-NAMPTFIFFRNGVKIDQIQGADASGLEEKVAKYA 106 (288)
T ss_pred hhhCcccEEEEEeHHHhhchhhhcCc-ccCceEEEEecCeEeeeecCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999 9999999999999999999999999999999886
No 10
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.87 E-value=2.4e-21 Score=133.92 Aligned_cols=93 Identities=24% Similarity=0.380 Sum_probs=86.0
Q ss_pred CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271 18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV 97 (162)
Q Consensus 18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l 97 (162)
+.+.+..|++.++|.+.+.+ ++++ +|+||++||++|+.+.|.+
T Consensus 2 ~~g~v~~i~~~~~~~~~i~~----~~~v---------------------------------vV~f~a~~c~~C~~~~p~l 44 (113)
T cd02989 2 GHGKYREVSDEKEFFEIVKS----SERV---------------------------------VCHFYHPEFFRCKIMDKHL 44 (113)
T ss_pred CCCCeEEeCCHHHHHHHHhC----CCcE---------------------------------EEEEECCCCccHHHHHHHH
Confidence 46789999999999999853 4677 9999999999999999999
Q ss_pred HHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC
Q 031271 98 KDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA 148 (162)
Q Consensus 98 ~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~ 148 (162)
++++++++++.|++||++++++++++|+| ..+||+++|++|+.+.++.|.
T Consensus 45 ~~la~~~~~i~f~~Vd~~~~~~l~~~~~v-~~vPt~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 45 EILAKKHLETKFIKVNAEKAPFLVEKLNI-KVLPTVILFKNGKTVDRIVGF 94 (113)
T ss_pred HHHHHHcCCCEEEEEEcccCHHHHHHCCC-ccCCEEEEEECCEEEEEEECc
Confidence 99999999999999999999999999999 999999999999999988765
No 11
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.87 E-value=3.4e-21 Score=132.06 Aligned_cols=97 Identities=14% Similarity=0.279 Sum_probs=84.0
Q ss_pred hhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC-
Q 031271 28 KHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD- 106 (162)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~- 106 (162)
.++|++.+..+ +++++ ||.|+++||++|+.+.|.|++++++|++
T Consensus 2 ~~~~d~~i~~~--~~klV---------------------------------VVdF~a~WC~pCk~mdp~l~ela~~~~~~ 46 (114)
T cd02986 2 KKEVDQAIKST--AEKVL---------------------------------VLRFGRDEDAVCLQLDDILSKTSHDLSKM 46 (114)
T ss_pred HHHHHHHHHhc--CCCEE---------------------------------EEEEeCCCChhHHHHHHHHHHHHHHccCc
Confidence 57888888864 58888 9999999999999999999999999999
Q ss_pred cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-----------CHHHHHHHHHHH
Q 031271 107 VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-----------KKDELQMKTEKR 160 (162)
Q Consensus 107 v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-----------~~~~l~~~l~~~ 160 (162)
+.|++||+|+.+++++.|+| ...||+++|++|+.+.--.|. +.++++..++..
T Consensus 47 ~~f~kVDVDev~dva~~y~I-~amPtfvffkngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 47 ASIYLVDVDKVPVYTQYFDI-SYIPSTIFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred eEEEEEeccccHHHHHhcCc-eeCcEEEEEECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 99999999999999999999 999999999999987644332 356677776644
No 12
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.86 E-value=8.9e-21 Score=132.12 Aligned_cols=106 Identities=20% Similarity=0.199 Sum_probs=91.9
Q ss_pred cCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChh--hh--h
Q 031271 17 AKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGP--CK--F 92 (162)
Q Consensus 17 ~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~--C~--~ 92 (162)
.+...|..+++ ++|++.+.+ ++.++ |++||+.||++ |+ +
T Consensus 6 ~~~~~v~~lt~-~nF~~~v~~---~~~~v---------------------------------vv~f~a~wc~p~~Ck~~~ 48 (120)
T cd03065 6 DGKDRVIDLNE-KNYKQVLKK---YDVLC---------------------------------LLYHEPVESDKEAQKQFQ 48 (120)
T ss_pred CCCcceeeCCh-hhHHHHHHh---CCceE---------------------------------EEEECCCcCChhhChhhc
Confidence 34456777754 888888854 46677 99999999988 99 8
Q ss_pred hhHHHHHHHHhc--CC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 93 IEPYVKDFAAMY--TD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 93 ~~~~l~~~~~~~--~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
+.|.+++++.++ ++ +.|++||+|++++++++|+| .++||+++|+||+.+. +.|. +.+.|.++|++..
T Consensus 49 ~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I-~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 49 MEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL-DEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred chhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC-ccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 999999999887 54 99999999999999999999 9999999999999887 8888 8999999999875
No 13
>PTZ00051 thioredoxin; Provisional
Probab=99.86 E-value=9.9e-21 Score=126.77 Aligned_cols=97 Identities=34% Similarity=0.712 Sum_probs=88.6
Q ss_pred ceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHH
Q 031271 21 LVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDF 100 (162)
Q Consensus 21 ~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~ 100 (162)
+|..+++.++|++.+. .++++ +|+||++||++|+.+.|.++++
T Consensus 1 ~v~~i~~~~~~~~~~~----~~~~v---------------------------------li~f~~~~C~~C~~~~~~l~~l 43 (98)
T PTZ00051 1 MVHIVTSQAEFESTLS----QNELV---------------------------------IVDFYAEWCGPCKRIAPFYEEC 43 (98)
T ss_pred CeEEecCHHHHHHHHh----cCCeE---------------------------------EEEEECCCCHHHHHHhHHHHHH
Confidence 4678888888888774 36777 9999999999999999999999
Q ss_pred HHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHH
Q 031271 101 AAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQM 155 (162)
Q Consensus 101 ~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~ 155 (162)
++.++++.|+.+|.++++.++++|++ .++||+++|++|+.+.++.|..++.|++
T Consensus 44 ~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 44 SKEYTKMVFVKVDVDELSEVAEKENI-TSMPTFKVFKNGSVVDTLLGANDEALKQ 97 (98)
T ss_pred HHHcCCcEEEEEECcchHHHHHHCCC-ceeeEEEEEeCCeEEEEEeCCCHHHhhc
Confidence 99999999999999999999999999 9999999999999999999998888764
No 14
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.86 E-value=1.4e-20 Score=129.86 Aligned_cols=93 Identities=26% Similarity=0.449 Sum_probs=83.7
Q ss_pred CCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHH
Q 031271 19 TPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVK 98 (162)
Q Consensus 19 ~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~ 98 (162)
.+.+.++++ ++|.+.+.... .++++ +|+||++||++|+.+.|.++
T Consensus 3 ~g~v~~i~~-~~f~~~i~~~~-~~~~v---------------------------------vv~F~a~~c~~C~~l~~~l~ 47 (113)
T cd02957 3 FGEVREISS-KEFLEEVTKAS-KGTRV---------------------------------VVHFYEPGFPRCKILDSHLE 47 (113)
T ss_pred CceEEEEcH-HHHHHHHHccC-CCCEE---------------------------------EEEEeCCCCCcHHHHHHHHH
Confidence 567888888 89998886521 24677 99999999999999999999
Q ss_pred HHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC
Q 031271 99 DFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA 148 (162)
Q Consensus 99 ~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~ 148 (162)
+++++|+++.|++||++++ +++++|+| ..+||+++|++|+.+.++.|.
T Consensus 48 ~la~~~~~v~f~~vd~~~~-~l~~~~~i-~~~Pt~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 48 ELAAKYPETKFVKINAEKA-FLVNYLDI-KVLPTLLVYKNGELIDNIVGF 95 (113)
T ss_pred HHHHHCCCcEEEEEEchhh-HHHHhcCC-CcCCEEEEEECCEEEEEEecH
Confidence 9999999999999999999 99999999 999999999999999999874
No 15
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.86 E-value=9.3e-21 Score=126.56 Aligned_cols=79 Identities=27% Similarity=0.466 Sum_probs=74.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK 156 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~ 156 (162)
+|+||++||++|+++.|.++++++.+++ +.|+.||++.+++++++|++ .++|++++|++|+.+.++.|. +.+.|+.+
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 94 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGV-QALPTVYLFAAGQPVDGFQGAQPEEQLRQM 94 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCC-CCCCEEEEEeCCEEeeeecCCCCHHHHHHH
Confidence 9999999999999999999999999976 88999999999999999999 999999999999999999998 89999888
Q ss_pred HH
Q 031271 157 TE 158 (162)
Q Consensus 157 l~ 158 (162)
|+
T Consensus 95 l~ 96 (96)
T cd02956 95 LD 96 (96)
T ss_pred hC
Confidence 74
No 16
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.85 E-value=1.2e-20 Score=130.40 Aligned_cols=77 Identities=18% Similarity=0.275 Sum_probs=71.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHH-HhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAA-KAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM 155 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~-~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~ 155 (162)
+|.|||+||++|+.+.|.++++++.+++ +.|++||++++..++ ++|+| .++||+++|++|+...++.|. +.+.|..
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I-~~~PTl~lf~~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHF-FYFPVIHLYYRSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCC-cccCEEEEEECCccceEEeCCCCHHHHHh
Confidence 9999999999999999999999999987 899999999999998 59999 999999999999988888888 8888877
Q ss_pred H
Q 031271 156 K 156 (162)
Q Consensus 156 ~ 156 (162)
|
T Consensus 112 ~ 112 (113)
T cd03006 112 F 112 (113)
T ss_pred h
Confidence 5
No 17
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.2e-21 Score=148.76 Aligned_cols=110 Identities=25% Similarity=0.495 Sum_probs=96.5
Q ss_pred ccCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhH
Q 031271 16 HAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEP 95 (162)
Q Consensus 16 ~~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~ 95 (162)
....+.+..+++ .+|.+.+-.. ...++| +|+||+|||++|+.+.|
T Consensus 19 ~~~a~~I~dvT~-anfe~~V~~~-S~~~PV---------------------------------lV~fWap~~~~c~qL~p 63 (304)
T COG3118 19 AMAAPGIKDVTE-ANFEQEVIQS-SREVPV---------------------------------LVDFWAPWCGPCKQLTP 63 (304)
T ss_pred ccccccceechH-hHHHHHHHHH-ccCCCe---------------------------------EEEecCCCCchHHHHHH
Confidence 334555777765 7888887763 234566 99999999999999999
Q ss_pred HHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 96 YVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 96 ~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
.|++++.+|.+ +.+.+||+|..+.++.+||| .++||++.|++|+.++.+.|. ..++|++||.++.
T Consensus 64 ~Lekla~~~~G~f~LakvN~D~~p~vAaqfgi-qsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 64 TLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGV-QSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred HHHHHHHHhCCceEEEEecCCcchhHHHHhCc-CcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhc
Confidence 99999999988 99999999999999999999 999999999999999999999 5669999999875
No 18
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.85 E-value=5.6e-21 Score=129.30 Aligned_cols=78 Identities=18% Similarity=0.365 Sum_probs=72.6
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC-CcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271 78 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM 155 (162)
Q Consensus 78 vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d-~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~ 155 (162)
|+|+|||+||++|+.+.|.|+++++.++++.|+.||.+ +.+.++++|+| .++||+++|++| .+.++.|. +.+.|.+
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V-~~~PT~~lf~~g-~~~~~~G~~~~~~l~~ 98 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGV-VGFPTILLFNST-PRVRYNGTRTLDSLAA 98 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCC-eecCEEEEEcCC-ceeEecCCCCHHHHHh
Confidence 39999999999999999999999999999999999999 88999999999 999999999999 77888898 8888887
Q ss_pred HH
Q 031271 156 KT 157 (162)
Q Consensus 156 ~l 157 (162)
||
T Consensus 99 f~ 100 (100)
T cd02999 99 FY 100 (100)
T ss_pred hC
Confidence 74
No 19
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.85 E-value=1.7e-20 Score=125.32 Aligned_cols=78 Identities=35% Similarity=0.711 Sum_probs=74.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHh-cCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAM-YTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKT 157 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~-~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l 157 (162)
+|+||++||++|+.+.|.|++++++ ++++.|+.+|.++.++++++|++ .++||+++|++|+.+.++.|.++++|.+.|
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i-~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI-TAVPTFVFFRNGTIVDRVSGADPKELAKKV 96 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC-ccccEEEEEECCEEEEEEeCCCHHHHHHhh
Confidence 9999999999999999999999998 55699999999999999999999 999999999999999999999999988876
No 20
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.85 E-value=1.4e-20 Score=129.49 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=76.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM 155 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~ 155 (162)
+|+||++||++|+.+.|.++++++.++ ++.|+.||++.++.++++|+| .++||+++|++|+.+.+..|. +.+.|.+
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V-~~~Pt~~i~~~g~~~~~~~G~~~~~~l~~ 106 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGA-HSVPAIVGIINGQVTFYHDSSFTKQHVVD 106 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCC-ccCCEEEEEECCEEEEEecCCCCHHHHHH
Confidence 999999999999999999999999996 489999999999999999999 999999999999999999997 8999999
Q ss_pred HHHHH
Q 031271 156 KTEKR 160 (162)
Q Consensus 156 ~l~~~ 160 (162)
+|+++
T Consensus 107 ~i~~~ 111 (111)
T cd02963 107 FVRKL 111 (111)
T ss_pred HHhcC
Confidence 99863
No 21
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.85 E-value=1.8e-20 Score=126.99 Aligned_cols=78 Identities=19% Similarity=0.385 Sum_probs=72.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCC-eEEEEEcCC-C-HHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG-KEIDRVVGA-K-KDELQ 154 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~G-k~i~~~~g~-~-~~~l~ 154 (162)
+|+||++||++|+.+.|.++++++++.+ +.|+.+|++++++++++|+| .++||+++|++| +.+.++.|. + .++|.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i-~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~ 101 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANI-RAYPTIRLYPGNASKYHSYNGWHRDADSIL 101 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCC-CcccEEEEEcCCCCCceEccCCCCCHHHHH
Confidence 9999999999999999999999999865 99999999999999999999 999999999887 889999997 6 88888
Q ss_pred HHH
Q 031271 155 MKT 157 (162)
Q Consensus 155 ~~l 157 (162)
+||
T Consensus 102 ~~i 104 (104)
T cd03004 102 EFI 104 (104)
T ss_pred hhC
Confidence 764
No 22
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.84 E-value=2e-20 Score=126.26 Aligned_cols=77 Identities=13% Similarity=0.292 Sum_probs=72.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK 156 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~ 156 (162)
+|+||++||++|+.+.|.++++++.+++ +.|+.||+++++.++++|+| ..+||+++|++|+.+.++.|. +.+.|.++
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGV-NSYPSLYVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCC-CccCEEEEEcCCCCcccCCCCCCHHHHHhh
Confidence 9999999999999999999999999976 89999999999999999999 999999999999998889888 78887765
No 23
>PRK10996 thioredoxin 2; Provisional
Probab=99.84 E-value=1.7e-20 Score=134.03 Aligned_cols=82 Identities=30% Similarity=0.597 Sum_probs=77.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK 156 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~ 156 (162)
+|+||++||++|+.+.|.|+++++++.+ +.|+++|++.+++++++|+| .++||+++|++|+.+.++.|. +.+.|+++
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V-~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~ 134 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRI-RSIPTIMIFKNGQVVDMLNGAVPKAPFDSW 134 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCC-CccCEEEEEECCEEEEEEcCCCCHHHHHHH
Confidence 9999999999999999999999998865 99999999999999999999 999999999999999999998 89999999
Q ss_pred HHHHh
Q 031271 157 TEKRR 161 (162)
Q Consensus 157 l~~~~ 161 (162)
|++++
T Consensus 135 l~~~~ 139 (139)
T PRK10996 135 LNEAL 139 (139)
T ss_pred HHHhC
Confidence 99864
No 24
>PRK09381 trxA thioredoxin; Provisional
Probab=99.84 E-value=1.2e-19 Score=123.99 Aligned_cols=83 Identities=30% Similarity=0.625 Sum_probs=78.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK 156 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~ 156 (162)
+|+||++||++|+.+.|.|+++++.+++ +.|+.+|++..+.++++|++ ..+||+++|++|+.+.+..|. +.+.|+.+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~ 103 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI-RGIPTLLLFKNGEVAATKVGALSKGQLKEF 103 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC-CcCCEEEEEeCCeEEEEecCCCCHHHHHHH
Confidence 9999999999999999999999999966 89999999999999999999 999999999999999999998 89999999
Q ss_pred HHHHhC
Q 031271 157 TEKRRN 162 (162)
Q Consensus 157 l~~~~~ 162 (162)
|.+++.
T Consensus 104 i~~~~~ 109 (109)
T PRK09381 104 LDANLA 109 (109)
T ss_pred HHHhcC
Confidence 998763
No 25
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.83 E-value=8.7e-20 Score=135.11 Aligned_cols=80 Identities=25% Similarity=0.331 Sum_probs=72.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--------CH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--------KK 150 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--------~~ 150 (162)
||+||++||++|+.+.|.|++++++|+.+.|++||++.+ .++.+|++ ..+||+++|++|+.+.++.|. +.
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v-~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~ 164 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDT-DALPALLVYKGGELIGNFVRVTEDLGEDFDA 164 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCC-CCCCEEEEEECCEEEEEEechHHhcCCCCCH
Confidence 999999999999999999999999999999999999988 89999999 999999999999999988765 35
Q ss_pred HHHHHHHHHH
Q 031271 151 DELQMKTEKR 160 (162)
Q Consensus 151 ~~l~~~l~~~ 160 (162)
+.|+.+|.++
T Consensus 165 ~~le~~L~~~ 174 (175)
T cd02987 165 EDLESFLVEY 174 (175)
T ss_pred HHHHHHHHhc
Confidence 6677777653
No 26
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.82 E-value=1.6e-19 Score=123.38 Aligned_cols=78 Identities=22% Similarity=0.397 Sum_probs=69.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhc----C---CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCe-EEEEEcCC-C
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMY----T---DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGK-EIDRVVGA-K 149 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~----~---~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk-~i~~~~g~-~ 149 (162)
+|+||++||++|+++.|.++++++.+ + .+.|+.||++++++++++|+| .++||+++|++|+ ...++.|. +
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v-~~~Ptl~~~~~g~~~~~~~~g~~~ 100 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI-NKYPTLKLFRNGMMMKREYRGQRS 100 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC-CcCCEEEEEeCCcCcceecCCCCC
Confidence 99999999999999999999988764 2 388999999999999999999 9999999999998 44677787 8
Q ss_pred HHHHHHHH
Q 031271 150 KDELQMKT 157 (162)
Q Consensus 150 ~~~l~~~l 157 (162)
.+.|.+||
T Consensus 101 ~~~l~~fi 108 (108)
T cd02996 101 VEALAEFV 108 (108)
T ss_pred HHHHHhhC
Confidence 88888775
No 27
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.82 E-value=3.4e-19 Score=120.10 Aligned_cols=79 Identities=29% Similarity=0.497 Sum_probs=72.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM 155 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~ 155 (162)
+|+||++||++|+.+.|.|+++++.++ ++.|..+|+++++.++++|+| .++||+++|++|+. .++.|. +.+.|..
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i-~~~Pt~~~~~~g~~-~~~~G~~~~~~l~~ 97 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFV-TALPTIYHAKDGVF-RRYQGPRDKEDLIS 97 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCC-cccCEEEEeCCCCE-EEecCCCCHHHHHH
Confidence 899999999999999999999998875 489999999999999999999 99999999999985 677887 8999999
Q ss_pred HHHH
Q 031271 156 KTEK 159 (162)
Q Consensus 156 ~l~~ 159 (162)
+|++
T Consensus 98 ~i~~ 101 (101)
T cd02994 98 FIEE 101 (101)
T ss_pred HHhC
Confidence 8864
No 28
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.81 E-value=5.1e-19 Score=118.71 Aligned_cols=82 Identities=27% Similarity=0.490 Sum_probs=75.7
Q ss_pred ceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271 76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL 153 (162)
Q Consensus 76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l 153 (162)
++|+++||++||+.|+.+.|.++++.+++++ +.++.+|+++.++++.++++ .++|++++|++|+.+.++.|. +.+.|
T Consensus 14 ~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v-~~vPt~~i~~~g~~v~~~~g~~~~~~~ 92 (97)
T cd02949 14 RLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGI-MGTPTVQFFKDKELVKEISGVKMKSEY 92 (97)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCC-eeccEEEEEECCeEEEEEeCCccHHHH
Confidence 4449999999999999999999999999975 99999999999999999999 999999999999999999998 78888
Q ss_pred HHHHH
Q 031271 154 QMKTE 158 (162)
Q Consensus 154 ~~~l~ 158 (162)
.++|+
T Consensus 93 ~~~l~ 97 (97)
T cd02949 93 REFIE 97 (97)
T ss_pred HHhhC
Confidence 88763
No 29
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.81 E-value=4.9e-19 Score=121.28 Aligned_cols=75 Identities=11% Similarity=0.130 Sum_probs=70.9
Q ss_pred EEEEecCC--ChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHH
Q 031271 79 VIYYTAAW--CGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQ 154 (162)
Q Consensus 79 vv~F~a~w--C~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~ 154 (162)
+|.||++| |++|+.+.|.|++++++|++ +.|+++|++++++++.+|+| .++||+++|++|+.+.++.|. +.+++.
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V-~sIPTli~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGV-LRTPALLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCC-CcCCEEEEEECCEEEEEEeCccCHHHHh
Confidence 89999997 99999999999999999988 88999999999999999999 999999999999999999998 666664
No 30
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.81 E-value=6.5e-19 Score=126.32 Aligned_cols=84 Identities=25% Similarity=0.525 Sum_probs=75.4
Q ss_pred eEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCc--HHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHH
Q 031271 77 KVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWL--PEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKD 151 (162)
Q Consensus 77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~--~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~ 151 (162)
+++|+||++||++|+.+.|.++++++.|.+ +.|+.|+++.. ..++++|+| .++||+++| ++|+++.++.|. +.+
T Consensus 22 ~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V-~~iPt~v~~~~~G~~v~~~~G~~~~~ 100 (142)
T cd02950 22 PTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV-DGIPHFVFLDREGNEEGQSIGLQPKQ 100 (142)
T ss_pred EEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC-CCCCEEEEECCCCCEEEEEeCCCCHH
Confidence 339999999999999999999999999975 78888888854 588999999 999999999 589999999999 788
Q ss_pred HHHHHHHHHh
Q 031271 152 ELQMKTEKRR 161 (162)
Q Consensus 152 ~l~~~l~~~~ 161 (162)
.|+++|++++
T Consensus 101 ~l~~~l~~l~ 110 (142)
T cd02950 101 VLAQNLDALV 110 (142)
T ss_pred HHHHHHHHHH
Confidence 8999998875
No 31
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.80 E-value=1.3e-18 Score=116.25 Aligned_cols=82 Identities=40% Similarity=0.808 Sum_probs=77.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK 156 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~ 156 (162)
+|+||++||++|+.+.+.++++.+.+++ +.|+.+|++.++.++++|++ ..+|++++|++|+.+.+..|. +.+.|..+
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~ 96 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI-RSIPTLLLFKNGKEVDRSVGALPKAALKQL 96 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC-CcCCEEEEEeCCcEeeeecCCCCHHHHHHH
Confidence 9999999999999999999999988875 99999999999999999999 999999999999999999898 78999999
Q ss_pred HHHHh
Q 031271 157 TEKRR 161 (162)
Q Consensus 157 l~~~~ 161 (162)
|++++
T Consensus 97 l~~~~ 101 (101)
T TIGR01068 97 INKNL 101 (101)
T ss_pred HHhhC
Confidence 98763
No 32
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.79 E-value=2e-18 Score=125.01 Aligned_cols=93 Identities=22% Similarity=0.431 Sum_probs=80.8
Q ss_pred CCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHH
Q 031271 19 TPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVK 98 (162)
Q Consensus 19 ~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~ 98 (162)
...+..++ .++|++.+.. ..++++ +|+||++||++|+.+.|.++
T Consensus 27 ~~~v~~l~-~~~f~~~l~~--~~~~~v---------------------------------vV~Fya~wC~~Ck~l~p~l~ 70 (152)
T cd02962 27 PEHIKYFT-PKTLEEELER--DKRVTW---------------------------------LVEFFTTWSPECVNFAPVFA 70 (152)
T ss_pred CCccEEcC-HHHHHHHHHh--cCCCEE---------------------------------EEEEECCCCHHHHHHHHHHH
Confidence 45666665 4778887754 235677 99999999999999999999
Q ss_pred HHHHhcC--CcEEEEEECCCcHHHHHhcCCCCC------ccEEEEEcCCeEEEEEcCC
Q 031271 99 DFAAMYT--DVQFIKIDVDWLPEAAKAFDLIDV------LPTFVLVKRGKEIDRVVGA 148 (162)
Q Consensus 99 ~~~~~~~--~v~f~~vd~d~~~~l~~~~~i~~~------~Ptiv~~~~Gk~i~~~~g~ 148 (162)
+++++++ ++.|++||++++++++++|+| .. +||+++|++|+.+.++.|+
T Consensus 71 ~la~~~~~~~v~f~~VDvd~~~~la~~~~V-~~~~~v~~~PT~ilf~~Gk~v~r~~G~ 127 (152)
T cd02962 71 ELSLKYNNNNLKFGKIDIGRFPNVAEKFRV-STSPLSKQLPTIILFQGGKEVARRPYY 127 (152)
T ss_pred HHHHHcccCCeEEEEEECCCCHHHHHHcCc-eecCCcCCCCEEEEEECCEEEEEEecc
Confidence 9999986 399999999999999999999 88 9999999999999999973
No 33
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.79 E-value=1.8e-18 Score=132.39 Aligned_cols=108 Identities=19% Similarity=0.322 Sum_probs=93.1
Q ss_pred CCceeEeechhhHHHHHHhhh-cccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271 19 TPLVMELQSKHQWRSQYEASK-QSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV 97 (162)
Q Consensus 19 ~~~v~~i~s~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l 97 (162)
.+.|..++ .++|++.+.... ..++++ +|+||++||++|+.+.|.+
T Consensus 29 ~~~Vv~Lt-~~nF~~~v~~~~~~~~~~v---------------------------------lV~FyApWC~~Ck~~~P~~ 74 (224)
T PTZ00443 29 ANALVLLN-DKNFEKLTQASTGATTGPW---------------------------------FVKFYAPWCSHCRKMAPAW 74 (224)
T ss_pred CCCcEECC-HHHHHHHHhhhcccCCCCE---------------------------------EEEEECCCChHHHHHHHHH
Confidence 45677774 578888775432 124566 9999999999999999999
Q ss_pred HHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 98 KDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 98 ~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
+++++++++ +.|..+|++++++++++|+| .++||+++|++|+.+.+..|. +.+.|.+++.+..
T Consensus 75 e~la~~~~~~v~~~~VD~~~~~~l~~~~~I-~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 75 ERLAKALKGQVNVADLDATRALNLAKRFAI-KGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred HHHHHHcCCCeEEEEecCcccHHHHHHcCC-CcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence 999999987 89999999999999999999 999999999999999988886 8999999988764
No 34
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.79 E-value=1.4e-18 Score=118.28 Aligned_cols=78 Identities=21% Similarity=0.385 Sum_probs=70.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCC--cHHHHHhcCCCCCccEEEEEcCCe-----EEEEEcCC-C
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDW--LPEAAKAFDLIDVLPTFVLVKRGK-----EIDRVVGA-K 149 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~--~~~l~~~~~i~~~~Ptiv~~~~Gk-----~i~~~~g~-~ 149 (162)
+|+||++||++|+.+.|.++++++.+.+ +.|+.+|++. +++++++|++ .++||+++|++|+ ....+.|. +
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i-~~~Pt~~~~~~~~~~~~~~~~~~~G~~~ 100 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV-QGFPTLKVFRPPKKASKHAVEDYNGERS 100 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC-CcCCEEEEEeCCCcccccccccccCccC
Confidence 9999999999999999999999999876 8899999998 8899999999 9999999998775 45666777 8
Q ss_pred HHHHHHHH
Q 031271 150 KDELQMKT 157 (162)
Q Consensus 150 ~~~l~~~l 157 (162)
.+.|.+||
T Consensus 101 ~~~l~~fi 108 (109)
T cd03002 101 AKAIVDFV 108 (109)
T ss_pred HHHHHHHh
Confidence 88998887
No 35
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.79 E-value=2e-18 Score=119.24 Aligned_cols=82 Identities=17% Similarity=0.316 Sum_probs=73.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEE--EEcCC-CHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEID--RVVGA-KKDELQM 155 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~--~~~g~-~~~~l~~ 155 (162)
+|+||++||++|+.+.|.+++++..++.+.|..+|++++++++.+|++ ..+||+++|++|+... ++.|. +..+|.+
T Consensus 26 vv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v-~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~ 104 (113)
T cd02975 26 VVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGV-ERVPTTIFLQDGGKDGGIRYYGLPAGYEFAS 104 (113)
T ss_pred EEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCC-CcCCEEEEEeCCeecceEEEEecCchHHHHH
Confidence 899999999999999999999999887799999999999999999999 9999999998765443 67787 7889999
Q ss_pred HHHHHh
Q 031271 156 KTEKRR 161 (162)
Q Consensus 156 ~l~~~~ 161 (162)
+|...+
T Consensus 105 ~i~~i~ 110 (113)
T cd02975 105 LIEDIV 110 (113)
T ss_pred HHHHHH
Confidence 988765
No 36
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.79 E-value=1.1e-18 Score=117.32 Aligned_cols=78 Identities=28% Similarity=0.574 Sum_probs=72.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL 153 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l 153 (162)
+|+||++||++|+.+.|.++++++++. ++.|+.+|++.++.++++|++ ..+||+++|++|+.+.++.|. +.+.|
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~G~~~~~~l 98 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV-RGYPTLLLFKDGEKVDKYKGTRDLDSL 98 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC-CcCCEEEEEeCCCeeeEeeCCCCHHHH
Confidence 999999999999999999999998885 489999999999999999999 999999999999998889998 88888
Q ss_pred HHHH
Q 031271 154 QMKT 157 (162)
Q Consensus 154 ~~~l 157 (162)
+++|
T Consensus 99 ~~~i 102 (102)
T cd03005 99 KEFV 102 (102)
T ss_pred HhhC
Confidence 7764
No 37
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.78 E-value=3.6e-18 Score=115.08 Aligned_cols=78 Identities=19% Similarity=0.437 Sum_probs=71.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcC--C-cEEEEEECCC--cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYT--D-VQFIKIDVDW--LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDE 152 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~--~-v~f~~vd~d~--~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~ 152 (162)
+|+||++||++|+.+.|.++++++.++ + +.++.+|++. ++.++++|++ .++||+++|++|+.+.++.|. +.+.
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i-~~~Pt~~~~~~g~~~~~~~g~~~~~~ 99 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV-KGFPTFKYFENGKFVEKYEGERTAED 99 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC-ccccEEEEEeCCCeeEEeCCCCCHHH
Confidence 999999999999999999999998875 3 8899999998 9999999999 999999999999999999988 8888
Q ss_pred HHHHH
Q 031271 153 LQMKT 157 (162)
Q Consensus 153 l~~~l 157 (162)
|.+||
T Consensus 100 l~~~l 104 (104)
T cd02997 100 IIEFM 104 (104)
T ss_pred HHhhC
Confidence 88764
No 38
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.78 E-value=1.1e-18 Score=116.94 Aligned_cols=83 Identities=22% Similarity=0.434 Sum_probs=75.5
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHhcCC---cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271 78 VVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL 153 (162)
Q Consensus 78 vvv~F~a~wC~~C~~~~~~l~~~~~~~~~---v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l 153 (162)
++|+||++||++|+.+.+.++++++.+.+ +.++.+|++.++.++++|++ .++|++++|++|+.+.++.|. +.++|
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i-~~~P~~~~~~~~~~~~~~~g~~~~~~l 94 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGV-SGFPTIKFFPKGKKPVDYEGGRDLEAI 94 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCC-CcCCEEEEecCCCcceeecCCCCHHHH
Confidence 39999999999999999999999998874 99999999999999999999 999999999877757778887 89999
Q ss_pred HHHHHHHh
Q 031271 154 QMKTEKRR 161 (162)
Q Consensus 154 ~~~l~~~~ 161 (162)
+.+|++++
T Consensus 95 ~~~i~~~~ 102 (102)
T TIGR01126 95 VEFVNEKS 102 (102)
T ss_pred HHHHHhcC
Confidence 99999863
No 39
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.78 E-value=9.1e-19 Score=118.74 Aligned_cols=79 Identities=28% Similarity=0.407 Sum_probs=71.1
Q ss_pred EEEEecCCChhhhhhhHHH---HHHHHhcC-CcEEEEEECCC----cHHHHHhcCCCCCccEEEEEc--CCeEEEEEcCC
Q 031271 79 VIYYTAAWCGPCKFIEPYV---KDFAAMYT-DVQFIKIDVDW----LPEAAKAFDLIDVLPTFVLVK--RGKEIDRVVGA 148 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l---~~~~~~~~-~v~f~~vd~d~----~~~l~~~~~i~~~~Ptiv~~~--~Gk~i~~~~g~ 148 (162)
+|+||++||++|+++.+.+ +++.+.+. ++.++.+|+++ .++++++|++ .++||+++|+ +|+.+.++.|.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i-~~~Pti~~~~~~~g~~~~~~~G~ 93 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGV-FGPPTYLFYGPGGEPEPLRLPGF 93 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCC-CCCCEEEEECCCCCCCCcccccc
Confidence 9999999999999999987 67887777 59999999987 6789999999 9999999996 89999999998
Q ss_pred -CHHHHHHHHH
Q 031271 149 -KKDELQMKTE 158 (162)
Q Consensus 149 -~~~~l~~~l~ 158 (162)
+.++|+++|+
T Consensus 94 ~~~~~l~~~l~ 104 (104)
T cd02953 94 LTADEFLEALE 104 (104)
T ss_pred cCHHHHHHHhC
Confidence 8999988874
No 40
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.77 E-value=4.5e-18 Score=119.02 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=70.2
Q ss_pred EEEEecCCChhhhhhhHHHH---HHHHhcC-CcEEEEEECCCc-------------HHHHHhcCCCCCccEEEEEc-C-C
Q 031271 79 VIYYTAAWCGPCKFIEPYVK---DFAAMYT-DVQFIKIDVDWL-------------PEAAKAFDLIDVLPTFVLVK-R-G 139 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~---~~~~~~~-~v~f~~vd~d~~-------------~~l~~~~~i~~~~Ptiv~~~-~-G 139 (162)
+|+||++||++|+.+.+.+. .+.+.+. ++.++.+|++.. .+++.+|++ .++||++++. + |
T Consensus 18 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v-~~~Pt~~~~~~~gg 96 (125)
T cd02951 18 LLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV-RFTPTVIFLDPEGG 96 (125)
T ss_pred EEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC-ccccEEEEEcCCCC
Confidence 99999999999999999874 5555554 488999999864 689999999 9999999995 5 7
Q ss_pred eEEEEEcCC-CHHHHHHHHHHHh
Q 031271 140 KEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 140 k~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
+++.++.|. +.+.+.++|+...
T Consensus 97 ~~~~~~~G~~~~~~~~~~l~~~~ 119 (125)
T cd02951 97 KEIARLPGYLPPDEFLAYLEYVQ 119 (125)
T ss_pred ceeEEecCCCCHHHHHHHHHHHH
Confidence 999999998 7888988888764
No 41
>PTZ00062 glutaredoxin; Provisional
Probab=99.77 E-value=4e-18 Score=128.69 Aligned_cols=74 Identities=9% Similarity=0.139 Sum_probs=71.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE 158 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~ 158 (162)
+++|||+||++|+.+.|.+++++++|+++.|+.||.+ |+| .++||+++|++|+.+.|+.|.++.+|...++
T Consensus 21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V-~~vPtfv~~~~g~~i~r~~G~~~~~~~~~~~ 91 (204)
T PTZ00062 21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DAN-NEYGVFEFYQNSQLINSLEGCNTSTLVSFIR 91 (204)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCc-ccceEEEEEECCEEEeeeeCCCHHHHHHHHH
Confidence 8999999999999999999999999999999999988 999 9999999999999999999999999999998
Q ss_pred HHh
Q 031271 159 KRR 161 (162)
Q Consensus 159 ~~~ 161 (162)
++.
T Consensus 92 ~~~ 94 (204)
T PTZ00062 92 GWA 94 (204)
T ss_pred HHc
Confidence 875
No 42
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.77 E-value=4.4e-18 Score=115.49 Aligned_cols=80 Identities=26% Similarity=0.441 Sum_probs=71.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL 153 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l 153 (162)
+|+||++||++|+.+.|.|+++++.+. ++.+..+|++..+.++++|+| .++||+++|++|.. .++.|. +.+.|
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I-~~~Pt~~l~~~~~~-~~~~G~~~~~~l 96 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGV-RGYPTIKLLKGDLA-YNYRGPRTKDDI 96 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCC-ccccEEEEEcCCCc-eeecCCCCHHHH
Confidence 999999999999999999999999873 388999999999999999999 99999999987754 557777 89999
Q ss_pred HHHHHHH
Q 031271 154 QMKTEKR 160 (162)
Q Consensus 154 ~~~l~~~ 160 (162)
..++++.
T Consensus 97 ~~~~~~~ 103 (104)
T cd03000 97 VEFANRV 103 (104)
T ss_pred HHHHHhh
Confidence 9998864
No 43
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.76 E-value=1.1e-17 Score=125.55 Aligned_cols=77 Identities=17% Similarity=0.337 Sum_probs=69.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--------CH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--------KK 150 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--------~~ 150 (162)
||+||++||++|+.+.|.|++++++|+++.|++||++.. ...|++ ..+||+++|++|+.+.++.|. +.
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i-~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~ 181 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPD-KNLPTILVYRNGDIVKQFIGLLEFGGMNTTM 181 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCC-CCCCEEEEEECCEEEEEEeCchhhCCCCCCH
Confidence 999999999999999999999999999999999999864 579999 999999999999999999864 46
Q ss_pred HHHHHHHHH
Q 031271 151 DELQMKTEK 159 (162)
Q Consensus 151 ~~l~~~l~~ 159 (162)
+.|+.+|.+
T Consensus 182 ~~lE~~L~~ 190 (192)
T cd02988 182 EDLEWLLVQ 190 (192)
T ss_pred HHHHHHHHh
Confidence 777777764
No 44
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.76 E-value=1.3e-17 Score=112.31 Aligned_cols=78 Identities=22% Similarity=0.407 Sum_probs=70.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCC-eEEEEEcCC-CHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG-KEIDRVVGA-KKDELQM 155 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~G-k~i~~~~g~-~~~~l~~ 155 (162)
+|+||++||++|+.+.|.|.++++.+++ +.|+.+|++++++++++|++ .++|++++|++| +....+.|. +.+.|.+
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i-~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~ 100 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGV-RGFPTIKVFGAGKNSPQDYQGGRTAKAIVS 100 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCC-CccCEEEEECCCCcceeecCCCCCHHHHHH
Confidence 9999999999999999999999998865 99999999999999999999 999999999888 445566666 8888888
Q ss_pred HH
Q 031271 156 KT 157 (162)
Q Consensus 156 ~l 157 (162)
|+
T Consensus 101 ~~ 102 (103)
T cd03001 101 AA 102 (103)
T ss_pred Hh
Confidence 75
No 45
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.74 E-value=3.6e-17 Score=114.49 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=66.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH-----------HHHHhcCC---CCCccEEEEEcCCeEEEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-----------EAAKAFDL---IDVLPTFVLVKRGKEIDR 144 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~-----------~l~~~~~i---~~~~Ptiv~~~~Gk~i~~ 144 (162)
+|+|+++|||+|+.+.|.|+++.++ .++.++.||++.+. ++.++|++ ..++||+++|++|+.+.+
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~ 105 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVSV 105 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEEE
Confidence 8999999999999999999999998 45778888887542 56677664 055999999999999999
Q ss_pred EcCC--CHHHHHHHHH
Q 031271 145 VVGA--KKDELQMKTE 158 (162)
Q Consensus 145 ~~g~--~~~~l~~~l~ 158 (162)
..|. +.++|.+++.
T Consensus 106 ~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 106 RCGSSTTAQELQDIAA 121 (122)
T ss_pred EeCCCCCHHHHHHHhh
Confidence 9994 6888888763
No 46
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.73 E-value=4.6e-17 Score=109.53 Aligned_cols=77 Identities=23% Similarity=0.466 Sum_probs=68.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC---cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCe--EEEEEcCC-CHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGK--EIDRVVGA-KKDE 152 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~---v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk--~i~~~~g~-~~~~ 152 (162)
+|+||++||++|+.+.|.++++++.+++ +.|+.+|++.+ +++..+++ .++|++++|++|+ ...++.|. +.+.
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~-~~~Pt~~~~~~~~~~~~~~~~g~~~~~~ 99 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVV-DGFPTILFFPAGDKSNPIKYEGDRTLED 99 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccC-CCCCEEEEEcCCCcCCceEccCCcCHHH
Confidence 9999999999999999999999998865 89999999987 68889999 9999999998887 56667777 8888
Q ss_pred HHHHH
Q 031271 153 LQMKT 157 (162)
Q Consensus 153 l~~~l 157 (162)
|.+||
T Consensus 100 l~~fi 104 (104)
T cd02995 100 LIKFI 104 (104)
T ss_pred HHhhC
Confidence 87764
No 47
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.72 E-value=7.7e-17 Score=110.39 Aligned_cols=78 Identities=23% Similarity=0.400 Sum_probs=66.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC-cHHHHH-hcCCCCCccEEEEEcCC-eEEEEEcC-C-CHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW-LPEAAK-AFDLIDVLPTFVLVKRG-KEIDRVVG-A-KKD 151 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~-~~~l~~-~~~i~~~~Ptiv~~~~G-k~i~~~~g-~-~~~ 151 (162)
+|.||++||++|+++.|.|+++++.+.+ +.++.||++. ...++. .|++ ..+||+++|++| +....+.| . +.+
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v-~~~Pti~~f~~~~~~~~~y~g~~~~~~ 103 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL-KSFPTILFFPKNSRQPIKYPSEQRDVD 103 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC-CcCCEEEEEcCCCCCceeccCCCCCHH
Confidence 9999999999999999999999998864 8999999997 567776 5999 999999999654 56666777 3 788
Q ss_pred HHHHHH
Q 031271 152 ELQMKT 157 (162)
Q Consensus 152 ~l~~~l 157 (162)
.|..||
T Consensus 104 ~l~~f~ 109 (109)
T cd02993 104 SLLMFV 109 (109)
T ss_pred HHHhhC
Confidence 887764
No 48
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.72 E-value=1.3e-16 Score=103.80 Aligned_cols=80 Identities=48% Similarity=0.888 Sum_probs=74.4
Q ss_pred eEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271 77 KVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM 155 (162)
Q Consensus 77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~ 155 (162)
+++|+||++||++|+.+.+.++++.+..+++.|+.+|++..+.+++.|++ .++|++++|++|+.+..+.|. +.+.|.+
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v-~~~P~~~~~~~g~~~~~~~g~~~~~~l~~ 90 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGV-RSIPTFLFFKNGKEVDRVVGADPKEELEE 90 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCc-ccccEEEEEECCEEEEEEecCCCHHHHHH
Confidence 34999999999999999999999999877899999999999999999999 999999999999999999998 6788888
Q ss_pred HH
Q 031271 156 KT 157 (162)
Q Consensus 156 ~l 157 (162)
+|
T Consensus 91 ~i 92 (93)
T cd02947 91 FL 92 (93)
T ss_pred Hh
Confidence 76
No 49
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.72 E-value=6.9e-17 Score=108.74 Aligned_cols=78 Identities=28% Similarity=0.551 Sum_probs=69.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcC---CcEEEEEECCC-cHHHHHhcCCCCCccEEEEEcCC-eEEEEEcCC-CHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDW-LPEAAKAFDLIDVLPTFVLVKRG-KEIDRVVGA-KKDE 152 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~---~v~f~~vd~d~-~~~l~~~~~i~~~~Ptiv~~~~G-k~i~~~~g~-~~~~ 152 (162)
+|+||++||++|+.+.|.++++++.++ ++.|+.+|++. ++.++++|++ .++|++++|++| +....+.|. +.++
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i-~~~P~~~~~~~~~~~~~~~~g~~~~~~ 100 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGV-SGFPTLKFFPKGSTEPVKYEGGRDLED 100 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCC-CCcCEEEEEeCCCCCccccCCccCHHH
Confidence 999999999999999999999999886 39999999999 9999999999 999999999655 666677776 8888
Q ss_pred HHHHH
Q 031271 153 LQMKT 157 (162)
Q Consensus 153 l~~~l 157 (162)
|.+||
T Consensus 101 l~~~i 105 (105)
T cd02998 101 LVKFV 105 (105)
T ss_pred HHhhC
Confidence 88774
No 50
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.70 E-value=1.4e-16 Score=110.84 Aligned_cols=98 Identities=18% Similarity=0.258 Sum_probs=79.4
Q ss_pred EeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEec-------CCChhhhhhhHH
Q 031271 24 ELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTA-------AWCGPCKFIEPY 96 (162)
Q Consensus 24 ~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a-------~wC~~C~~~~~~ 96 (162)
.+.+.++|.+.+... +++++ +|+||| +||++|+.+.|.
T Consensus 5 ~~~~~~~f~~~i~~~--~~~~v---------------------------------vV~F~A~~~~~~~~WC~pCr~~~P~ 49 (119)
T cd02952 5 AVRGYEEFLKLLKSH--EGKPI---------------------------------FILFYGDKDPDGQSWCPDCVKAEPV 49 (119)
T ss_pred cccCHHHHHHHHHhc--CCCeE---------------------------------EEEEEccCCCCCCCCCHhHHhhchh
Confidence 456777888887652 35677 999999 999999999999
Q ss_pred HHHHHHhcC-CcEEEEEECCC-------cHHHHHhcCCCC-CccEEEEEcCCeEEEEEcCCCHHHHHHHH
Q 031271 97 VKDFAAMYT-DVQFIKIDVDW-------LPEAAKAFDLID-VLPTFVLVKRGKEIDRVVGAKKDELQMKT 157 (162)
Q Consensus 97 l~~~~~~~~-~v~f~~vd~d~-------~~~l~~~~~i~~-~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l 157 (162)
++++..+++ ++.|+.||+++ +.+++..|+| . ++||+++|++|+.+....-.+.+.+..++
T Consensus 50 l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 50 VREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-TTGVPTLLRWKTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred HHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-ccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence 999999998 59999999976 4689999999 9 99999999888655443333666666554
No 51
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.70 E-value=1.3e-16 Score=105.83 Aligned_cols=78 Identities=24% Similarity=0.415 Sum_probs=70.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhc---CCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCC-eEEEEEcCC-CHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMY---TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG-KEIDRVVGA-KKDEL 153 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~---~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~G-k~i~~~~g~-~~~~l 153 (162)
+|+||++||++|+.+.+.++++++.+ .++.|+.+|++.++.++++|++ ..+|++++|++| +...++.|. +.+.+
T Consensus 19 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i-~~~Pt~~~~~~~~~~~~~~~g~~~~~~i 97 (101)
T cd02961 19 LVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGV-RGYPTIKLFPNGSKEPVKYEGPRTLESL 97 (101)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCC-CCCCEEEEEcCCCcccccCCCCcCHHHH
Confidence 99999999999999999999999988 3599999999999999999999 999999999766 788888887 78888
Q ss_pred HHHH
Q 031271 154 QMKT 157 (162)
Q Consensus 154 ~~~l 157 (162)
.+|+
T Consensus 98 ~~~~ 101 (101)
T cd02961 98 VEFI 101 (101)
T ss_pred HhhC
Confidence 7764
No 52
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.69 E-value=5.2e-16 Score=131.04 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=87.7
Q ss_pred ccccceeEEecCCCeeeeeC-ceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEE-------------------
Q 031271 56 YCINEMVLNINDGGNVVFWV-LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKID------------------- 113 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~-k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd------------------- 113 (162)
...|++.+.+.+|+.+..+. |+|+|+|||+||++|+.+.|.|+++.++++ ++.|+.|.
T Consensus 36 ~~lP~f~l~D~dG~~v~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~ 115 (521)
T PRK14018 36 HTLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAG 115 (521)
T ss_pred CCCCCeEeecCCCceeeccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHh
Confidence 35789999999999776544 899999999999999999999999999886 46665543
Q ss_pred ---------CCCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHH
Q 031271 114 ---------VDWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEK 159 (162)
Q Consensus 114 ---------~d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~ 159 (162)
.|.+..+++.|++ .++|+++++ ++|+++.++.|. +.++|+++|+.
T Consensus 116 ~~y~~~pV~~D~~~~lak~fgV-~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 116 LDYPKLPVLTDNGGTLAQSLNI-SVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred CCCcccceeccccHHHHHHcCC-CCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 3456678999999 999998666 899999999998 89999998883
No 53
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.68 E-value=5e-16 Score=133.37 Aligned_cols=109 Identities=20% Similarity=0.346 Sum_probs=95.5
Q ss_pred CCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH-
Q 031271 19 TPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV- 97 (162)
Q Consensus 19 ~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l- 97 (162)
....+.+++.+++++.+++++.++|++ +|+||++||++|+.+.+..
T Consensus 451 ~~~~~~i~s~~~l~~~l~~a~~~gK~V---------------------------------lVdF~A~WC~~Ck~~e~~~~ 497 (571)
T PRK00293 451 HLNFQRIKTVAELDQALAEAKGKGKPV---------------------------------MLDLYADWCVACKEFEKYTF 497 (571)
T ss_pred CCCceecCCHHHHHHHHHHHHhcCCcE---------------------------------EEEEECCcCHhHHHHHHHhc
Confidence 446778889999999999988888999 9999999999999998875
Q ss_pred --HHHHHhcCCcEEEEEECCCc----HHHHHhcCCCCCccEEEEEc-CCeEE--EEEcCC-CHHHHHHHHHHHh
Q 031271 98 --KDFAAMYTDVQFIKIDVDWL----PEAAKAFDLIDVLPTFVLVK-RGKEI--DRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 98 --~~~~~~~~~v~f~~vd~d~~----~~l~~~~~i~~~~Ptiv~~~-~Gk~i--~~~~g~-~~~~l~~~l~~~~ 161 (162)
+++.+.++++.++++|++++ .+++++|++ .++||+++|+ +|+++ .++.|. +++++.+++++..
T Consensus 498 ~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v-~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 498 SDPQVQQALADTVLLQADVTANNAEDVALLKHYNV-LGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC-CCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 77888888899999999853 678999999 9999999994 89884 688898 9999999999865
No 54
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.67 E-value=8.3e-17 Score=111.82 Aligned_cols=96 Identities=15% Similarity=0.373 Sum_probs=73.4
Q ss_pred hhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcC-Cc
Q 031271 29 HQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT-DV 107 (162)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~-~v 107 (162)
.+|++.++.++.+++++ +|+||++||++|+.+.|.+.+...... +.
T Consensus 6 ~~~~~al~~A~~~~kpV---------------------------------lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~ 52 (117)
T cd02959 6 VTLEDGIKEAKDSGKPL---------------------------------MLLIHKTWCGACKALKPKFAESKEISELSH 52 (117)
T ss_pred eeHHHHHHHHHHcCCcE---------------------------------EEEEeCCcCHHHHHHHHHHhhhHHHHhhcC
Confidence 46889999998889999 999999999999999999988766432 35
Q ss_pred EEEEEECCCcH-HHHHhcCCCCC--ccEEEEE-cCCeEEEEEc---CC-CHHHHHHHHH
Q 031271 108 QFIKIDVDWLP-EAAKAFDLIDV--LPTFVLV-KRGKEIDRVV---GA-KKDELQMKTE 158 (162)
Q Consensus 108 ~f~~vd~d~~~-~l~~~~~i~~~--~Ptiv~~-~~Gk~i~~~~---g~-~~~~l~~~l~ 158 (162)
.|+.++++... .....|++ .+ +||++++ ++|+.+.++. |. +.+.+.+.|.
T Consensus 53 ~fv~v~vd~~~~~~~~~~~~-~g~~vPt~~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~ 110 (117)
T cd02959 53 NFVMVNLEDDEEPKDEEFSP-DGGYIPRILFLDPSGDVHPEIINKKGNPNYKYFYSSAA 110 (117)
T ss_pred cEEEEEecCCCCchhhhccc-CCCccceEEEECCCCCCchhhccCCCCccccccCCCHH
Confidence 67777777654 45678888 76 9999999 5999988544 44 4444444443
No 55
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.66 E-value=1.5e-15 Score=98.18 Aligned_cols=77 Identities=27% Similarity=0.428 Sum_probs=69.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK 156 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~ 156 (162)
+..||++||++|+.+.|.+++++++++. +.++.||.++.++++++|++ .++||+++ +|+. ++.|. +.++|.++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v-~~vPt~~~--~g~~--~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGI-MAVPAIVI--NGDV--EFIGAPTKEELVEA 77 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCC-ccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence 6789999999999999999999998864 99999999999999999999 99999986 7763 67787 89999999
Q ss_pred HHHH
Q 031271 157 TEKR 160 (162)
Q Consensus 157 l~~~ 160 (162)
|++.
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 9875
No 56
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.65 E-value=7.8e-16 Score=103.69 Aligned_cols=84 Identities=15% Similarity=0.208 Sum_probs=76.4
Q ss_pred ceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCC--CccEEEEEcC--CeEEEEEcCC-C
Q 031271 76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLID--VLPTFVLVKR--GKEIDRVVGA-K 149 (162)
Q Consensus 76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~--~~Ptiv~~~~--Gk~i~~~~g~-~ 149 (162)
+++++.|+++||++|..+.|.+++++++|.+ +.|+.+|+++++.+++.||+ . .+|+++++++ |+......+. +
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i-~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGL-KEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCC-ChhhCCEEEEEecccccccCCCccccC
Confidence 4559999999999999999999999999977 99999999999999999999 9 9999999987 7777666676 8
Q ss_pred HHHHHHHHHHH
Q 031271 150 KDELQMKTEKR 160 (162)
Q Consensus 150 ~~~l~~~l~~~ 160 (162)
.+.|.+||+++
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 57
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.65 E-value=5.8e-16 Score=107.06 Aligned_cols=61 Identities=21% Similarity=0.399 Sum_probs=55.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcC---C-cEEEEEECC--CcHHHHHhcCCCCCccEEEEEcCCe
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYT---D-VQFIKIDVD--WLPEAAKAFDLIDVLPTFVLVKRGK 140 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~---~-v~f~~vd~d--~~~~l~~~~~i~~~~Ptiv~~~~Gk 140 (162)
+|+||++||++|+.+.|.|+++++.+. + +.|..+|++ .+++++++|++ .++||+++|++|+
T Consensus 23 vV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i-~~~Pt~~lf~~~~ 89 (114)
T cd02992 23 LVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGV-TGYPTLRYFPPFS 89 (114)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCC-CCCCEEEEECCCC
Confidence 999999999999999999999998764 3 888899965 57789999999 9999999998887
No 58
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.63 E-value=4.3e-15 Score=109.67 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=82.2
Q ss_pred ccccceeEEecCCC--eee----eeCceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC--------------
Q 031271 56 YCINEMVLNINDGG--NVV----FWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-------------- 115 (162)
Q Consensus 56 ~~~~~~~~~~~~~~--~~~----~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d-------------- 115 (162)
...|++++.+.+|+ .+. ..+|+|+|+||++||++|+.+.|.++++.+. ++.++.|+.+
T Consensus 38 ~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~ 115 (173)
T TIGR00385 38 KPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELG 115 (173)
T ss_pred CCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcC
Confidence 34688998888886 333 2458999999999999999999999998764 4666666643
Q ss_pred ---------CcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 116 ---------WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 116 ---------~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
....+++.|++ .++|+.+++ ++|+++.++.|. +.++++++|.+++
T Consensus 116 ~~f~~v~~D~~~~~~~~~~v-~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 116 NPYQAILIDPNGKLGLDLGV-YGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CCCceEEECCCCchHHhcCC-eeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 33356778999 999975555 899999999998 8999999999875
No 59
>PTZ00102 disulphide isomerase; Provisional
Probab=99.63 E-value=3.3e-15 Score=125.35 Aligned_cols=89 Identities=22% Similarity=0.390 Sum_probs=79.2
Q ss_pred eeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC---cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE-EEEcC
Q 031271 72 VFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI-DRVVG 147 (162)
Q Consensus 72 ~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~---v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i-~~~~g 147 (162)
..++++|+|+||++||++|+.+.|.|+++++.+++ +.++.+|++.+...++.|++ .++||+++|++|+.+ .++.|
T Consensus 372 ~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v-~~~Pt~~~~~~~~~~~~~~~G 450 (477)
T PTZ00102 372 FKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSW-SAFPTILFVKAGERTPIPYEG 450 (477)
T ss_pred hcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCC-cccCeEEEEECCCcceeEecC
Confidence 56679999999999999999999999999988763 88999999999999999999 999999999766544 57888
Q ss_pred C-CHHHHHHHHHHHh
Q 031271 148 A-KKDELQMKTEKRR 161 (162)
Q Consensus 148 ~-~~~~l~~~l~~~~ 161 (162)
. +.+.|.++|+++.
T Consensus 451 ~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 451 ERTVEGFKEFVNKHA 465 (477)
T ss_pred cCCHHHHHHHHHHcC
Confidence 7 9999999999875
No 60
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.62 E-value=4.5e-15 Score=123.54 Aligned_cols=82 Identities=21% Similarity=0.471 Sum_probs=74.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeE-EEEEcCC-CHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE-IDRVVGA-KKDE 152 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~-i~~~~g~-~~~~ 152 (162)
+|+|||+||++|+++.|.+.++++.+. ++.|+.||++.+++++++|+| .++||+++|++|+. +.++.|. +.+.
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i-~~~Pt~~~~~~g~~~~~~~~g~~~~~~ 100 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGV-SGYPTLKIFRNGEDSVSDYNGPRDADG 100 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCC-ccccEEEEEeCCccceeEecCCCCHHH
Confidence 999999999999999999999887663 399999999999999999999 99999999999987 7777887 8999
Q ss_pred HHHHHHHHh
Q 031271 153 LQMKTEKRR 161 (162)
Q Consensus 153 l~~~l~~~~ 161 (162)
|.+++.+..
T Consensus 101 l~~~i~~~~ 109 (462)
T TIGR01130 101 IVKYMKKQS 109 (462)
T ss_pred HHHHHHHhc
Confidence 999998764
No 61
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.62 E-value=5.1e-15 Score=112.87 Aligned_cols=82 Identities=20% Similarity=0.356 Sum_probs=71.1
Q ss_pred EEEEec---CCChhhhhhhHHHHHHHHhcCCc--EEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEE-EEcCC-CHH
Q 031271 79 VIYYTA---AWCGPCKFIEPYVKDFAAMYTDV--QFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEID-RVVGA-KKD 151 (162)
Q Consensus 79 vv~F~a---~wC~~C~~~~~~l~~~~~~~~~v--~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~-~~~g~-~~~ 151 (162)
++.|++ +||++|+.+.|.++++++.++++ .++.+|.+++++++++|+| .++||+++|++|+.+. ++.|. +.+
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V-~~~Pt~~~f~~g~~~~~~~~G~~~~~ 101 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGV-ERVPTTIILEEGKDGGIRYTGIPAGY 101 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCC-CccCEEEEEeCCeeeEEEEeecCCHH
Confidence 455777 99999999999999999999774 4666666799999999999 9999999999999984 88888 788
Q ss_pred HHHHHHHHHh
Q 031271 152 ELQMKTEKRR 161 (162)
Q Consensus 152 ~l~~~l~~~~ 161 (162)
+|.++|+.++
T Consensus 102 ~l~~~i~~~~ 111 (215)
T TIGR02187 102 EFAALIEDIV 111 (215)
T ss_pred HHHHHHHHHH
Confidence 8988888764
No 62
>PLN02309 5'-adenylylsulfate reductase
Probab=99.62 E-value=5.6e-15 Score=123.28 Aligned_cols=81 Identities=22% Similarity=0.327 Sum_probs=69.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECC-CcHHHHH-hcCCCCCccEEEEEcCCe-EEEEEc-C-CCHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD-WLPEAAK-AFDLIDVLPTFVLVKRGK-EIDRVV-G-AKKD 151 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d-~~~~l~~-~~~i~~~~Ptiv~~~~Gk-~i~~~~-g-~~~~ 151 (162)
+|+||++||++|+.+.|.|+++++.|.+ +.|+++|++ .+.+++. +|+| .++||+++|++|. ....+. + .+.+
T Consensus 369 lV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I-~~~PTil~f~~g~~~~v~Y~~~~R~~~ 447 (457)
T PLN02309 369 LVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL-GSFPTILLFPKNSSRPIKYPSEKRDVD 447 (457)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC-ceeeEEEEEeCCCCCeeecCCCCcCHH
Confidence 9999999999999999999999999854 999999999 7778886 6999 9999999997664 223344 3 3899
Q ss_pred HHHHHHHHH
Q 031271 152 ELQMKTEKR 160 (162)
Q Consensus 152 ~l~~~l~~~ 160 (162)
.|..||+..
T Consensus 448 ~L~~fv~~~ 456 (457)
T PLN02309 448 SLLSFVNSL 456 (457)
T ss_pred HHHHHHHHh
Confidence 999999875
No 63
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.62 E-value=6.5e-15 Score=122.98 Aligned_cols=85 Identities=18% Similarity=0.229 Sum_probs=69.7
Q ss_pred CceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCcH-HH-HHhcCCCCCccEEEEEcCCe-EEEEEc-CC
Q 031271 75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLP-EA-AKAFDLIDVLPTFVLVKRGK-EIDRVV-GA 148 (162)
Q Consensus 75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~~-~l-~~~~~i~~~~Ptiv~~~~Gk-~i~~~~-g~ 148 (162)
+++|+|+||++||++|+.+.|.|++++++|.+ +.|+.||+|.+. .+ .++|+| ..+||+++|++|. ....+. |.
T Consensus 371 ~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I-~~~PTii~Fk~g~~~~~~Y~~g~ 449 (463)
T TIGR00424 371 KEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL-GSFPTILFFPKHSSRPIKYPSEK 449 (463)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC-CccceEEEEECCCCCceeCCCCC
Confidence 34459999999999999999999999999864 899999998753 44 478999 9999999998875 223354 44
Q ss_pred -CHHHHHHHHHHH
Q 031271 149 -KKDELQMKTEKR 160 (162)
Q Consensus 149 -~~~~l~~~l~~~ 160 (162)
+.+.|..||+.+
T Consensus 450 R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 450 RDVDSLMSFVNLL 462 (463)
T ss_pred CCHHHHHHHHHhh
Confidence 899999999864
No 64
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.61 E-value=1.4e-14 Score=106.11 Aligned_cols=108 Identities=25% Similarity=0.449 Sum_probs=90.7
Q ss_pred eeeccccceeEEecCCCeeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC-----------
Q 031271 53 CLIYCINEMVLNINDGGNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW----------- 116 (162)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~----------- 116 (162)
......|++.+.+.+|+.+..+ +++++|+||++||++|+...+.+.++.+++++ +.++.|+.+.
T Consensus 36 ~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~ 115 (173)
T PRK03147 36 QVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNR 115 (173)
T ss_pred CCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHH
Confidence 3445678899999999987543 48899999999999999999999999998864 8888888753
Q ss_pred -----------cHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 117 -----------LPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 117 -----------~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
+.++.+.|++ ..+|+++++ ++|+++..+.|. +.+++.+++++..
T Consensus 116 ~~~~~~~~~d~~~~~~~~~~v-~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~~ 172 (173)
T PRK03147 116 YGLTFPVAIDKGRQVIDAYGV-GPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKIK 172 (173)
T ss_pred hCCCceEEECCcchHHHHcCC-CCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHhc
Confidence 3567899999 999988777 799999888887 8899999888653
No 65
>PTZ00102 disulphide isomerase; Provisional
Probab=99.61 E-value=6.9e-15 Score=123.42 Aligned_cols=81 Identities=25% Similarity=0.472 Sum_probs=73.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhc----CCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMY----TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL 153 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~----~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l 153 (162)
+|+||++||++|+++.|.++++++.+ +++.|+.||++.+.+++++|+| .++||+++|++|+.+ ++.|. +.+.|
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i-~~~Pt~~~~~~g~~~-~y~g~~~~~~l 130 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGV-RGYPTIKFFNKGNPV-NYSGGRTADGI 130 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCC-CcccEEEEEECCceE-EecCCCCHHHH
Confidence 99999999999999999999988765 2499999999999999999999 999999999999887 77777 89999
Q ss_pred HHHHHHHh
Q 031271 154 QMKTEKRR 161 (162)
Q Consensus 154 ~~~l~~~~ 161 (162)
.+|+.++.
T Consensus 131 ~~~l~~~~ 138 (477)
T PTZ00102 131 VSWIKKLT 138 (477)
T ss_pred HHHHHHhh
Confidence 99999874
No 66
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.8e-15 Score=126.20 Aligned_cols=98 Identities=20% Similarity=0.361 Sum_probs=81.7
Q ss_pred EEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcC
Q 031271 63 LNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR 138 (162)
Q Consensus 63 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~ 138 (162)
++..+...+...+.-++|.||||||++|+.+.|.+++.+..+. .+..++||++.+.+++.+|+| .++||+.+|+|
T Consensus 30 Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v-~gyPTlkiFrn 108 (493)
T KOG0190|consen 30 LTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEV-RGYPTLKIFRN 108 (493)
T ss_pred EecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcC-CCCCeEEEEec
Confidence 3333333444444444999999999999999999999998774 399999999999999999999 99999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 139 GKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 139 Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
|+....+.|. ..+.+..|+++..
T Consensus 109 G~~~~~Y~G~r~adgIv~wl~kq~ 132 (493)
T KOG0190|consen 109 GRSAQDYNGPREADGIVKWLKKQS 132 (493)
T ss_pred CCcceeccCcccHHHHHHHHHhcc
Confidence 9986667777 8999999998753
No 67
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.61 E-value=1.1e-14 Score=108.54 Aligned_cols=103 Identities=13% Similarity=0.140 Sum_probs=80.2
Q ss_pred ccccceeEEecCC--Ceee----eeCceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH-----------
Q 031271 56 YCINEMVLNINDG--GNVV----FWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP----------- 118 (162)
Q Consensus 56 ~~~~~~~~~~~~~--~~~~----~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~----------- 118 (162)
...|++.+.+.+| +.+. ...|+|+|+||++||++|+.+.|.+.++.+. ++.++.|+.++.+
T Consensus 43 ~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~ 120 (185)
T PRK15412 43 KPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELG 120 (185)
T ss_pred CCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcC
Confidence 3467788887774 4332 2468999999999999999999999998763 6888888875432
Q ss_pred ------------HHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 119 ------------EAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 119 ------------~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
.+...|++ .++|+.+++ ++|+++.++.|. +.+.|++.|+.++
T Consensus 121 ~~~~~~~~D~~~~~~~~~gv-~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 121 NPYALSLFDGDGMLGLDLGV-YGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CCCceEEEcCCccHHHhcCC-CcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 24557899 999976665 799999999998 8888888887654
No 68
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.60 E-value=6.8e-15 Score=102.90 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=72.4
Q ss_pred ccceeEEecCC--Ceeee---eCceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC------------------
Q 031271 58 INEMVLNINDG--GNVVF---WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV------------------ 114 (162)
Q Consensus 58 ~~~~~~~~~~~--~~~~~---~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~------------------ 114 (162)
.|++.+.+.+| ..+.. .+++++|+||++||++|+.+.|.++++.+.+ ++.++.|+.
T Consensus 3 ~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~ 81 (127)
T cd03010 3 APAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPY 81 (127)
T ss_pred CCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCC
Confidence 35666666666 44432 3488999999999999999999999998877 466666663
Q ss_pred -----CCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHH
Q 031271 115 -----DWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDEL 153 (162)
Q Consensus 115 -----d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l 153 (162)
|....+++.|++ ..+|+.+++ ++|+++.++.|. +.+.|
T Consensus 82 ~~~~~D~~~~~~~~~~v-~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 82 AAVGFDPDGRVGIDLGV-YGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred ceEEECCcchHHHhcCC-CCCCeEEEECCCceEEEEEeccCChHhc
Confidence 445578889999 999965555 899999999998 65543
No 69
>PHA02125 thioredoxin-like protein
Probab=99.60 E-value=1.2e-14 Score=93.16 Aligned_cols=70 Identities=27% Similarity=0.608 Sum_probs=60.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--CHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--KKDELQMK 156 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--~~~~l~~~ 156 (162)
+++||++||++|+.+.|.|+++ .+.++.||.+.+++++++|++ .++||++ +|+.+.+..|. +..+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~-----~~~~~~vd~~~~~~l~~~~~v-~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV-----EYTYVDVDTDEGVELTAKHHI-RSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH-----hheEEeeeCCCCHHHHHHcCC-ceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 6899999999999999999765 256899999999999999999 9999987 78888999998 34666665
Q ss_pred H
Q 031271 157 T 157 (162)
Q Consensus 157 l 157 (162)
|
T Consensus 73 ~ 73 (75)
T PHA02125 73 L 73 (75)
T ss_pred h
Confidence 4
No 70
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.59 E-value=1.1e-14 Score=102.15 Aligned_cols=69 Identities=19% Similarity=0.149 Sum_probs=57.3
Q ss_pred EEEEecCCChhhhhhhHH-H--HHHHHhc-CCcEEEEEECCCcHHHHH--------hcCCCCCccEEEEE-cCCeEEEEE
Q 031271 79 VIYYTAAWCGPCKFIEPY-V--KDFAAMY-TDVQFIKIDVDWLPEAAK--------AFDLIDVLPTFVLV-KRGKEIDRV 145 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~-l--~~~~~~~-~~v~f~~vd~d~~~~l~~--------~~~i~~~~Ptiv~~-~~Gk~i~~~ 145 (162)
+|+|+++||++|+.|.+. + .++.+.+ .++.++++|.++.+++.+ .|++ .++|+++++ ++|+++.+.
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~-~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQ-GGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCC-CCCCEEEEECCCCCEEeee
Confidence 999999999999999874 3 4666654 469999999999887765 3589 999999999 789999877
Q ss_pred cCC
Q 031271 146 VGA 148 (162)
Q Consensus 146 ~g~ 148 (162)
.+.
T Consensus 98 ~~~ 100 (124)
T cd02955 98 TYF 100 (124)
T ss_pred eec
Confidence 665
No 71
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.58 E-value=9.1e-15 Score=99.95 Aligned_cols=83 Identities=29% Similarity=0.437 Sum_probs=63.8
Q ss_pred eCceEEEEEecCCChhhhhhhHHHHH---HHHhcC-CcEEEEEECCCc--------------------HHHHHhcCCCCC
Q 031271 74 WVLKVVIYYTAAWCGPCKFIEPYVKD---FAAMYT-DVQFIKIDVDWL--------------------PEAAKAFDLIDV 129 (162)
Q Consensus 74 ~~k~vvv~F~a~wC~~C~~~~~~l~~---~~~~~~-~v~f~~vd~d~~--------------------~~l~~~~~i~~~ 129 (162)
++++++++||++||++|+.+.+.+.+ +.+.+. ++.++.++++.. .+++++||| .+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v-~g 82 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV-NG 82 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT---S
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC-Cc
Confidence 34566999999999999999998875 444443 488888888643 358999999 99
Q ss_pred ccEEEEE-cCCeEEEEEcCC-CHHHHHHHH
Q 031271 130 LPTFVLV-KRGKEIDRVVGA-KKDELQMKT 157 (162)
Q Consensus 130 ~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l 157 (162)
+||++++ .+|+.+.++.|+ ++++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999999 589999999999 899998875
No 72
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.57 E-value=4.1e-14 Score=102.61 Aligned_cols=84 Identities=20% Similarity=0.354 Sum_probs=65.5
Q ss_pred ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc------------HHHH-Hhc---CCCCCccEEEEE-cC
Q 031271 76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL------------PEAA-KAF---DLIDVLPTFVLV-KR 138 (162)
Q Consensus 76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~------------~~l~-~~~---~i~~~~Ptiv~~-~~ 138 (162)
+.++|+||++||++|+++.|.+++++++| ++.++.|++|.. .... ..| ++ .++||.+++ ++
T Consensus 51 ~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v-~~iPTt~LID~~ 128 (153)
T TIGR02738 51 DYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRP-VVTPATFLVNVN 128 (153)
T ss_pred CCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCC-CCCCeEEEEeCC
Confidence 44599999999999999999999999988 566766666642 2333 445 88 999998888 56
Q ss_pred CeE-EEEEcCC-CHHHHHHHHHHHh
Q 031271 139 GKE-IDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 139 Gk~-i~~~~g~-~~~~l~~~l~~~~ 161 (162)
|+. ..++.|. +.+++++.|.+++
T Consensus 129 G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 129 TRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCEEEEEeecccCHHHHHHHHHHhC
Confidence 664 5577888 8999999888753
No 73
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.55 E-value=1e-14 Score=100.76 Aligned_cols=81 Identities=14% Similarity=0.179 Sum_probs=63.7
Q ss_pred ceEEEEEec--CCCh---hhhhhhHHHHHHHHhcCCcEEEEEEC-----CCcHHHHHhcCCCC--CccEEEEEcCCe--E
Q 031271 76 LKVVIYYTA--AWCG---PCKFIEPYVKDFAAMYTDVQFIKIDV-----DWLPEAAKAFDLID--VLPTFVLVKRGK--E 141 (162)
Q Consensus 76 k~vvv~F~a--~wC~---~C~~~~~~l~~~~~~~~~v~f~~vd~-----d~~~~l~~~~~i~~--~~Ptiv~~~~Gk--~ 141 (162)
+.++|.||| |||+ .|..+.|.+.+.+. .+.+.+||+ .++.+|+++|+| . ++||+.+|++|. .
T Consensus 19 ~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y~I-~~~gyPTl~lF~~g~~~~ 94 (116)
T cd03007 19 KYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERYKL-DKESYPVIYLFHGGDFEN 94 (116)
T ss_pred CcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHhCC-CcCCCCEEEEEeCCCcCC
Confidence 334999999 8888 77777666655443 388999999 467889999999 9 999999999884 3
Q ss_pred EEEEcC--CCHHHHHHHHHHH
Q 031271 142 IDRVVG--AKKDELQMKTEKR 160 (162)
Q Consensus 142 i~~~~g--~~~~~l~~~l~~~ 160 (162)
...+.| .+.+.|.+||.++
T Consensus 95 ~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 95 PVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CccCCCCcccHHHHHHHHHhc
Confidence 234555 5899999999875
No 74
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.55 E-value=7.6e-14 Score=96.20 Aligned_cols=99 Identities=10% Similarity=0.186 Sum_probs=84.4
Q ss_pred hhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHH-H--HHHHHhcC
Q 031271 29 HQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPY-V--KDFAAMYT 105 (162)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~-l--~~~~~~~~ 105 (162)
.+|++.++.|+.++|++ +|+|+++||++|+.+... | +++.+.+.
T Consensus 4 gs~~~a~~~Ak~~~K~l---------------------------------lv~~~~~~c~~c~~~~~~vl~~~~v~~~l~ 50 (114)
T cd02958 4 GSFEDAKQEAKSEKKWL---------------------------------LVYLQSEDEFDSQVLNRDLWSNESVKEFIR 50 (114)
T ss_pred CCHHHHHHHHHhhCceE---------------------------------EEEEecCCcchHHHHHHHHcCCHHHHHHHH
Confidence 46888999999999999 999999999999999764 4 56666554
Q ss_pred -CcEEEEEECC--CcHHHHHhcCCCCCccEEEEE-c-CCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 106 -DVQFIKIDVD--WLPEAAKAFDLIDVLPTFVLV-K-RGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 106 -~v~f~~vd~d--~~~~l~~~~~i~~~~Ptiv~~-~-~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
++.++.+|++ +...+++.|++ .++|+++++ + +|+.+.++.|. +++.|.+.|+++.
T Consensus 51 ~~~v~~~~d~~~~e~~~~~~~~~~-~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 51 ENFIFWQCDIDSSEGQRFLQSYKV-DKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred hCEEEEEecCCCccHHHHHHHhCc-cCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 4888888887 45678999999 999999998 5 79999999999 8999999998764
No 75
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.55 E-value=2.6e-14 Score=100.53 Aligned_cols=81 Identities=25% Similarity=0.549 Sum_probs=63.0
Q ss_pred EecCCCeeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCc-------------------
Q 031271 64 NINDGGNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWL------------------- 117 (162)
Q Consensus 64 ~~~~~~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~------------------- 117 (162)
.+.+|+.+..+ +|+|+|+||++||++|+.+.|.+.++.+++. ++.++.|++|..
T Consensus 4 ~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T cd03009 4 LRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFS 83 (131)
T ss_pred cccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccC
Confidence 34566655443 3788999999999999999999998877763 467777777633
Q ss_pred -----HHHHHhcCCCCCccEEEEE-cCCeEEEEE
Q 031271 118 -----PEAAKAFDLIDVLPTFVLV-KRGKEIDRV 145 (162)
Q Consensus 118 -----~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~ 145 (162)
..++++|++ ..+|+++++ ++|+++.+.
T Consensus 84 ~~~~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 84 DRERRSRLNRTFKI-EGIPTLIILDADGEVVTTD 116 (131)
T ss_pred CHHHHHHHHHHcCC-CCCCEEEEECCCCCEEccc
Confidence 357789999 999999999 599887653
No 76
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.54 E-value=7.5e-14 Score=99.75 Aligned_cols=91 Identities=31% Similarity=0.491 Sum_probs=74.9
Q ss_pred cccceeEEe--cCCCeeeeeC---ceEEEEEecC-CChhhhhhhHHHHHHHHhcC--CcEEEEEECCC------------
Q 031271 57 CINEMVLNI--NDGGNVVFWV---LKVVIYYTAA-WCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW------------ 116 (162)
Q Consensus 57 ~~~~~~~~~--~~~~~~~~~~---k~vvv~F~a~-wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~------------ 116 (162)
..|++.+.+ .+|+.+..++ |+++|+||++ ||++|+...|.+.++.+.|. ++.++.|..+.
T Consensus 5 ~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~ 84 (146)
T PF08534_consen 5 KAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYG 84 (146)
T ss_dssp B--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTT
T ss_pred CCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhC
Confidence 457888855 9999887766 9999999999 99999999999999988864 38888877653
Q ss_pred ---------cHHHHHhcCCCC---------CccEEEEE-cCCeEEEEEcCC
Q 031271 117 ---------LPEAAKAFDLID---------VLPTFVLV-KRGKEIDRVVGA 148 (162)
Q Consensus 117 ---------~~~l~~~~~i~~---------~~Ptiv~~-~~Gk~i~~~~g~ 148 (162)
...+.+.|++ . .+|+++++ ++|+++.+..|.
T Consensus 85 ~~~~~~~D~~~~~~~~~~~-~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 85 INFPVLSDPDGALAKALGV-TIMEDPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp TTSEEEEETTSHHHHHTTC-EEECCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred CCceEEechHHHHHHHhCC-ccccccccCCeecEEEEEECCCEEEEEEeCC
Confidence 3468888998 7 99987666 899999999998
No 77
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.54 E-value=9.3e-14 Score=105.92 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=69.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT 157 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l 157 (162)
++.||++||++|..+.+.+++++.+++++.+..+|.+..++++++|+| .++||++++++|+. +.|. ..++|.++|
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V-~~vPtl~i~~~~~~---~~G~~~~~~l~~~l 212 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGV-MSVPKIVINKGVEE---FVGAYPEEQFLEYI 212 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCC-ccCCEEEEecCCEE---EECCCCHHHHHHHH
Confidence 555999999999999999999999888899999999999999999999 99999999988864 6687 788999888
Q ss_pred HH
Q 031271 158 EK 159 (162)
Q Consensus 158 ~~ 159 (162)
.+
T Consensus 213 ~~ 214 (215)
T TIGR02187 213 LS 214 (215)
T ss_pred Hh
Confidence 75
No 78
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.54 E-value=8.4e-14 Score=96.59 Aligned_cols=96 Identities=24% Similarity=0.399 Sum_probs=72.3
Q ss_pred cceeEEecCCCeeee---eCceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC---------------------
Q 031271 59 NEMVLNINDGGNVVF---WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV--------------------- 114 (162)
Q Consensus 59 ~~~~~~~~~~~~~~~---~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~--------------------- 114 (162)
|++.+.+.+|+.+.. ..++++|+||++||++|+.+.|.+.++++++. +..+.+|-
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVIN 79 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEE
Confidence 456777777776643 23789999999999999999999999987742 22222221
Q ss_pred CCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271 115 DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK 156 (162)
Q Consensus 115 d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~ 156 (162)
|.+.+++++|++ .++|+++++.+|++..+..|. +++.|.+.
T Consensus 80 d~~~~~~~~~~i-~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 80 DPDGVISARWGV-SVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred CCCcHHHHhCCC-CcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 344579999999 999999999544488888998 88888764
No 79
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.53 E-value=9.7e-14 Score=104.76 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=80.7
Q ss_pred ccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECC-------Cc----HH
Q 031271 56 YCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD-------WL----PE 119 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d-------~~----~~ 119 (162)
...|++.+.+.+|+.+..++ |+|+|+||++||++|+...|.|.++.++|.+ +.++.|+++ .. ..
T Consensus 17 ~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~ 96 (199)
T PTZ00056 17 KSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRK 96 (199)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHH
Confidence 35788999999999886554 9999999999999999999999999999864 888888753 11 22
Q ss_pred HHHhcCC----C---------------------------C----Ccc----EEEEEcCCeEEEEEcCC-CHHHHHHHHHH
Q 031271 120 AAKAFDL----I---------------------------D----VLP----TFVLVKRGKEIDRVVGA-KKDELQMKTEK 159 (162)
Q Consensus 120 l~~~~~i----~---------------------------~----~~P----tiv~~~~Gk~i~~~~g~-~~~~l~~~l~~ 159 (162)
+++++++ . . .+| ++++-++|+++.++.|. +++.|++.|++
T Consensus 97 f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ 176 (199)
T PTZ00056 97 FNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAE 176 (199)
T ss_pred HHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHH
Confidence 3344433 0 1 122 34555899999999998 78888888887
Q ss_pred Hh
Q 031271 160 RR 161 (162)
Q Consensus 160 ~~ 161 (162)
++
T Consensus 177 ll 178 (199)
T PTZ00056 177 LL 178 (199)
T ss_pred HH
Confidence 65
No 80
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.52 E-value=1.5e-13 Score=88.39 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=58.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--CHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--KKDELQM 155 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--~~~~l~~ 155 (162)
.|.||++||++|+.+.|.+++++++++. +.|+.+| +++.+.+|++ .++|++++ ||+.+ +.|. +.++|.+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v-~~vPti~i--~G~~~--~~G~~~~~~~l~~ 73 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGV-TATPGVAV--DGELV--IMGKIPSKEEIKE 73 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCC-CcCCEEEE--CCEEE--EEeccCCHHHHHH
Confidence 3789999999999999999999999975 7777766 3445788999 99999998 99888 5564 5577777
Q ss_pred HH
Q 031271 156 KT 157 (162)
Q Consensus 156 ~l 157 (162)
++
T Consensus 74 ~l 75 (76)
T TIGR00412 74 IL 75 (76)
T ss_pred Hh
Confidence 65
No 81
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.52 E-value=1.3e-13 Score=92.86 Aligned_cols=85 Identities=33% Similarity=0.506 Sum_probs=70.4
Q ss_pred eEEecCCCeeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhc--CCcEEEEEECCCc-------------------
Q 031271 62 VLNINDGGNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMY--TDVQFIKIDVDWL------------------- 117 (162)
Q Consensus 62 ~~~~~~~~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~--~~v~f~~vd~d~~------------------- 117 (162)
.+.+.+|+.+... .++++|+||++||++|+...+.+.++.+++ +++.++.|+.|..
T Consensus 3 ~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~ 82 (116)
T cd02966 3 SLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVL 82 (116)
T ss_pred cccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceE
Confidence 3444555554333 377899999999999999999999999999 5699999999885
Q ss_pred ----HHHHHhcCCCCCccEEEEE-cCCeEEEEEcC
Q 031271 118 ----PEAAKAFDLIDVLPTFVLV-KRGKEIDRVVG 147 (162)
Q Consensus 118 ----~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g 147 (162)
..+.+.|++ ..+|+++++ ++|+++.++.|
T Consensus 83 ~~~~~~~~~~~~~-~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 83 LDPDGELAKAYGV-RGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred EcCcchHHHhcCc-CccceEEEECCCCcEEEEecC
Confidence 678999999 999998888 68999988765
No 82
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.52 E-value=3.7e-13 Score=100.75 Aligned_cols=106 Identities=21% Similarity=0.212 Sum_probs=79.6
Q ss_pred eeeccccceeEEecCCCeeee-----eCceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC------------
Q 031271 53 CLIYCINEMVLNINDGGNVVF-----WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD------------ 115 (162)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~-----~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d------------ 115 (162)
......|++.+.+.+|+.+.. ..|+++|+||++||++|+.+.|.+.++.+++ ++.++.|..+
T Consensus 47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~ 125 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDH 125 (189)
T ss_pred CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhc
Confidence 344457889999999998765 3489999999999999999999999988765 4444444422
Q ss_pred --------CcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCCCHHHHHHHHHHH
Q 031271 116 --------WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGAKKDELQMKTEKR 160 (162)
Q Consensus 116 --------~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~~~~~l~~~l~~~ 160 (162)
...++.+.|++ ..+|+.+++ ++|+++.+......+.++++++..
T Consensus 126 ~~~~~~~~~~~~i~~~y~v-~~~P~~~lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 126 ELGGERYVVSAEIGMAFQV-GKIPYGVLLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred CCCcceeechhHHHHhccC-CccceEEEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 13467889999 999986666 789888763323667777777654
No 83
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.52 E-value=2.6e-14 Score=112.03 Aligned_cols=83 Identities=25% Similarity=0.450 Sum_probs=75.8
Q ss_pred eEEEEEecCCChhhhhhhHHHHHHHHhcCC----cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHH
Q 031271 77 KVVIYYTAAWCGPCKFIEPYVKDFAAMYTD----VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDE 152 (162)
Q Consensus 77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~----v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~ 152 (162)
.++|.||||||++|+++.|.|.++..++++ +++.++|++.-+.++..|+| +++||+.++++|-.+++-.|...+.
T Consensus 45 iW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgi-qGYPTIk~~kgd~a~dYRG~R~Kd~ 123 (468)
T KOG4277|consen 45 IWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGI-QGYPTIKFFKGDHAIDYRGGREKDA 123 (468)
T ss_pred eEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhcc-CCCceEEEecCCeeeecCCCccHHH
Confidence 349999999999999999999999888865 89999999999999999999 9999999999999999887778999
Q ss_pred HHHHHHHH
Q 031271 153 LQMKTEKR 160 (162)
Q Consensus 153 l~~~l~~~ 160 (162)
++++..+.
T Consensus 124 iieFAhR~ 131 (468)
T KOG4277|consen 124 IIEFAHRC 131 (468)
T ss_pred HHHHHHhc
Confidence 98887654
No 84
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.52 E-value=2.4e-13 Score=104.94 Aligned_cols=109 Identities=16% Similarity=0.146 Sum_probs=83.9
Q ss_pred eeccccceeEEecCCCeeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECC--------Cc---
Q 031271 54 LIYCINEMVLNINDGGNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD--------WL--- 117 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d--------~~--- 117 (162)
+....|++.+.+.+|+.+..+ .|++||+||++||++|+...|.|+++.++|.+ +.++.|+++ ..
T Consensus 75 ~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei 154 (236)
T PLN02399 75 TEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 154 (236)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHH
Confidence 334578899999999988654 38999999999999999999999999999964 888888863 11
Q ss_pred HHHH-HhcCC----C-----------------------------CCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 118 PEAA-KAFDL----I-----------------------------DVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 118 ~~l~-~~~~i----~-----------------------------~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
..++ +++++ . ...|+.+++ ++|+++.++.|. ++++|++.|++++
T Consensus 155 ~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 155 KQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred HHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 1222 22222 0 124766666 899999999999 8999999999876
Q ss_pred C
Q 031271 162 N 162 (162)
Q Consensus 162 ~ 162 (162)
+
T Consensus 235 ~ 235 (236)
T PLN02399 235 A 235 (236)
T ss_pred c
Confidence 3
No 85
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.52 E-value=2.2e-13 Score=124.05 Aligned_cols=104 Identities=18% Similarity=0.264 Sum_probs=84.2
Q ss_pred cccceeEEe--cCCCeeee----eCceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEEC--------------
Q 031271 57 CINEMVLNI--NDGGNVVF----WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDV-------------- 114 (162)
Q Consensus 57 ~~~~~~~~~--~~~~~~~~----~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~-------------- 114 (162)
..|++.... .+|..+.. ..|+|||+|||+||++|+...|.|+++.++|++ +.++.|..
T Consensus 396 ~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~ 475 (1057)
T PLN02919 396 KVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRN 475 (1057)
T ss_pred cCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHH
Confidence 456766543 56765543 358999999999999999999999999999975 67777631
Q ss_pred -------------CCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 115 -------------DWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 115 -------------d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
|....++++|++ .++|+++++ ++|+++.++.|. ..+.|.++|++++
T Consensus 476 ~~~~~~i~~pvv~D~~~~~~~~~~V-~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 476 AVLRYNISHPVVNDGDMYLWRELGV-SSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred HHHHhCCCccEEECCchHHHHhcCC-CccceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence 224467889999 999999999 799999999998 7888988888764
No 86
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.51 E-value=1.8e-13 Score=98.47 Aligned_cols=70 Identities=21% Similarity=0.425 Sum_probs=57.1
Q ss_pred eCceEEEEEecCCChhhhhhhHHHHHHHHhcC---------CcEEEEEECCCc-------------------------HH
Q 031271 74 WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT---------DVQFIKIDVDWL-------------------------PE 119 (162)
Q Consensus 74 ~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~---------~v~f~~vd~d~~-------------------------~~ 119 (162)
..|+|+|+|||+||++|+...|.|.++.+++. ++.++.|+.|.. ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 34777999999999999999999998776442 478888887632 24
Q ss_pred HHHhcCCCCCccEEEEE-cCCeEEEE
Q 031271 120 AAKAFDLIDVLPTFVLV-KRGKEIDR 144 (162)
Q Consensus 120 l~~~~~i~~~~Ptiv~~-~~Gk~i~~ 144 (162)
++++|++ .++|+.+++ ++|+++.+
T Consensus 104 l~~~y~v-~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSV-EELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCC-CCCCEEEEECCCCcEEee
Confidence 7788999 999998888 69999875
No 87
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.50 E-value=4.6e-13 Score=99.22 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=77.8
Q ss_pred ccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc-------------HHHHHhc
Q 031271 58 INEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-------------PEAAKAF 124 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~-------------~~l~~~~ 124 (162)
.+++.+ .+|+.+..++-. +|+||++||++|++..|.+.+++++| ++.++.|++|.. ..+...|
T Consensus 55 ~~~f~l--~dG~~v~lsd~~-lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~ 130 (181)
T PRK13728 55 PRWFRL--SNGRQVNLADWK-VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFF 130 (181)
T ss_pred CCccCC--CCCCEeehhHce-EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHh
Confidence 344555 488888777744 77899999999999999999999998 577777776632 2366788
Q ss_pred CC-CCCccEEEEE-cCCeEE-EEEcCC-CHHHHHHHHHHHh
Q 031271 125 DL-IDVLPTFVLV-KRGKEI-DRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 125 ~i-~~~~Ptiv~~-~~Gk~i-~~~~g~-~~~~l~~~l~~~~ 161 (162)
++ ...+|+.+++ ++|+++ ..+.|. +.++|++.|.+.+
T Consensus 131 g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll 171 (181)
T PRK13728 131 PNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTVL 171 (181)
T ss_pred CCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHHH
Confidence 83 1599987777 899886 578888 8999998888765
No 88
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.50 E-value=3.8e-13 Score=92.08 Aligned_cols=85 Identities=20% Similarity=0.302 Sum_probs=64.7
Q ss_pred cceeEEecCCCeeeee----CceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECC---C--------------
Q 031271 59 NEMVLNINDGGNVVFW----VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD---W-------------- 116 (162)
Q Consensus 59 ~~~~~~~~~~~~~~~~----~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d---~-------------- 116 (162)
|++.+.+.+|+.+..+ .++++|+||++||++|+.+.|.++++.+++.+ +.++.+.-+ +
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p 80 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFP 80 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCc
Confidence 5677888888877432 57899999999999999999999999888754 666655211 0
Q ss_pred ---cHHHHHhcCCCCCccEEEEE-cCCeEEEE
Q 031271 117 ---LPEAAKAFDLIDVLPTFVLV-KRGKEIDR 144 (162)
Q Consensus 117 ---~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~ 144 (162)
..++.++|++ ..+|+.+++ ++|+++.+
T Consensus 81 ~~~~~~~~~~~~~-~~~P~~~vid~~G~v~~~ 111 (114)
T cd02967 81 YVLSAELGMAYQV-SKLPYAVLLDEAGVIAAK 111 (114)
T ss_pred EEecHHHHhhcCC-CCcCeEEEECCCCeEEec
Confidence 1346778888 999998777 68887754
No 89
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.49 E-value=2.2e-13 Score=85.05 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=55.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
+..|+++||++|+.+.+.+++++..++++.|..+|++++++++++||+ .++|++++ +|+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i-~~vPti~i--~~~~~ 63 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGV-MSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCC-cccCEEEE--CCEEE
Confidence 678999999999999999999998888899999999999999999999 99999876 66654
No 90
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.49 E-value=4.6e-13 Score=105.49 Aligned_cols=84 Identities=17% Similarity=0.304 Sum_probs=68.3
Q ss_pred CceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-----------cHHHHHhcCCCCCccEEEEEcC-CeEE
Q 031271 75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-----------LPEAAKAFDLIDVLPTFVLVKR-GKEI 142 (162)
Q Consensus 75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-----------~~~l~~~~~i~~~~Ptiv~~~~-Gk~i 142 (162)
+++++|+||++||++|+.+.|.|++++++| ++.++.|++|. +..++++||| ..+|+++++++ |+.+
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~y-g~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV-~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRY-GIEVLPVSVDGGPLPGFPNARPDAGQAQQLKI-RTVPAVFLADPDPNQF 243 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHc-CcEEEEEeCCCCccccCCcccCCHHHHHHcCC-CcCCeEEEEECCCCEE
Confidence 366699999999999999999999999998 47777777764 3578999999 99999999953 5544
Q ss_pred E-EEcCC-CHHHHHHHHHHH
Q 031271 143 D-RVVGA-KKDELQMKTEKR 160 (162)
Q Consensus 143 ~-~~~g~-~~~~l~~~l~~~ 160 (162)
. ...|. +.++|.+.|...
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLA 263 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHH
Confidence 4 45587 899998887654
No 91
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.49 E-value=3e-13 Score=89.80 Aligned_cols=65 Identities=35% Similarity=0.692 Sum_probs=53.8
Q ss_pred ceEEEEEecCCChhhhhhhHHHHHHHHhcC---CcEEEEEECCCc-------------------------HHHHHhcCCC
Q 031271 76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDWL-------------------------PEAAKAFDLI 127 (162)
Q Consensus 76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~---~v~f~~vd~d~~-------------------------~~l~~~~~i~ 127 (162)
|+++|+||++||++|++..|.|.++.+.|+ ++.|+.|..|.. ..+.+.|++
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i- 80 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI- 80 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT--
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC-
Confidence 567999999999999999999999999999 499999988743 258889999
Q ss_pred CCccEEEEE-cCCeE
Q 031271 128 DVLPTFVLV-KRGKE 141 (162)
Q Consensus 128 ~~~Ptiv~~-~~Gk~ 141 (162)
..+|+++++ ++|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 999998888 77864
No 92
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.48 E-value=5.6e-13 Score=88.24 Aligned_cols=70 Identities=16% Similarity=0.281 Sum_probs=62.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL 153 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l 153 (162)
+..|+++||++|....+.+++++..++++.+..+|+++.++++.+|+| .++|++++ ||+.+.. |. +.+++
T Consensus 16 i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V-~~vPt~vi--dG~~~~~--G~~~~~e~ 86 (89)
T cd03026 16 FETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGI-MSVPAIFL--NGELFGF--GRMTLEEI 86 (89)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCC-ccCCEEEE--CCEEEEe--CCCCHHHH
Confidence 788999999999999999999999999999999999999999999999 99999975 8887764 65 55554
No 93
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.48 E-value=7.6e-14 Score=109.27 Aligned_cols=87 Identities=22% Similarity=0.391 Sum_probs=75.5
Q ss_pred eCceEEEEEecCCChhhhhhhHHHHHHHH----hcCC--cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEE-EEc
Q 031271 74 WVLKVVIYYTAAWCGPCKFIEPYVKDFAA----MYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEID-RVV 146 (162)
Q Consensus 74 ~~k~vvv~F~a~wC~~C~~~~~~l~~~~~----~~~~--v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~-~~~ 146 (162)
+...|+|.|||+||+.++++.|.+++.+. ++|+ +.+..||++++..++.+|.| ..+||+-+|+||.... .+-
T Consensus 12 s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I-~KyPTlKvfrnG~~~~rEYR 90 (375)
T KOG0912|consen 12 SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHI-NKYPTLKVFRNGEMMKREYR 90 (375)
T ss_pred cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhcc-ccCceeeeeeccchhhhhhc
Confidence 33445999999999999999999987765 4564 99999999999999999999 9999999999999887 445
Q ss_pred CC-CHHHHHHHHHHHh
Q 031271 147 GA-KKDELQMKTEKRR 161 (162)
Q Consensus 147 g~-~~~~l~~~l~~~~ 161 (162)
|. +.+.|.++|++..
T Consensus 91 g~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 91 GQRSVEALIEFIEKQL 106 (375)
T ss_pred cchhHHHHHHHHHHHh
Confidence 65 8999999998764
No 94
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.48 E-value=3.3e-13 Score=112.32 Aligned_cols=87 Identities=25% Similarity=0.448 Sum_probs=73.6
Q ss_pred eeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC----cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE--EEE
Q 031271 72 VFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD----VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI--DRV 145 (162)
Q Consensus 72 ~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~----v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i--~~~ 145 (162)
...+++|+|+||++||++|+.+.|.++++++.+.+ +.|+.+|++.+. +.. +++ .++||+++|++|+.. ..+
T Consensus 361 ~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i-~~~Pt~~~~~~~~~~~~~~~ 437 (462)
T TIGR01130 361 LDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEV-EGFPTIKFVPAGKKSEPVPY 437 (462)
T ss_pred ccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCc-cccCEEEEEeCCCCcCceEe
Confidence 34568999999999999999999999999998864 889999999874 444 999 999999999877653 456
Q ss_pred cCC-CHHHHHHHHHHHh
Q 031271 146 VGA-KKDELQMKTEKRR 161 (162)
Q Consensus 146 ~g~-~~~~l~~~l~~~~ 161 (162)
.|. +.+.|.++|.++.
T Consensus 438 ~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 438 DGDRTLEDFSKFIAKHA 454 (462)
T ss_pred cCcCCHHHHHHHHHhcC
Confidence 666 8999999998864
No 95
>PLN02412 probable glutathione peroxidase
Probab=99.45 E-value=1.7e-12 Score=95.40 Aligned_cols=107 Identities=16% Similarity=0.150 Sum_probs=82.9
Q ss_pred eccccceeEEecCCCeeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECC--------CcHHH-
Q 031271 55 IYCINEMVLNINDGGNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD--------WLPEA- 120 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d--------~~~~l- 120 (162)
....|++.+.+.+|+.+..+ .|++||+||++||++|+...|.|.++.++|.+ +.++.|+.+ ...++
T Consensus 6 ~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~ 85 (167)
T PLN02412 6 PKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQ 85 (167)
T ss_pred CCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHH
Confidence 35678899999999987654 48999999999999999999999999999974 888888753 21121
Q ss_pred ---HHhcC----------------------------------CCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 121 ---AKAFD----------------------------------LIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 121 ---~~~~~----------------------------------i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
.++++ + ...|+.+++ ++|+++.++.|. +++.|++.|++++
T Consensus 86 ~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v-~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 86 QTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAI-KWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred HHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCc-CCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 22222 2 335776666 899999999999 8889999998876
Q ss_pred C
Q 031271 162 N 162 (162)
Q Consensus 162 ~ 162 (162)
+
T Consensus 165 ~ 165 (167)
T PLN02412 165 G 165 (167)
T ss_pred h
Confidence 3
No 96
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.43 E-value=7.9e-13 Score=93.28 Aligned_cols=69 Identities=23% Similarity=0.564 Sum_probs=55.9
Q ss_pred ceEEEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCc-------------------------HHHHHhcCC
Q 031271 76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWL-------------------------PEAAKAFDL 126 (162)
Q Consensus 76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~-------------------------~~l~~~~~i 126 (162)
|+|+|+||++||++|+.+.|.++++.+++. ++.++.|++|.. ..+++.|++
T Consensus 18 k~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v 97 (132)
T cd02964 18 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKV 97 (132)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCC
Confidence 566999999999999999999999887664 467777777643 245678999
Q ss_pred CCCccEEEEE-cCCeEEEEE
Q 031271 127 IDVLPTFVLV-KRGKEIDRV 145 (162)
Q Consensus 127 ~~~~Ptiv~~-~~Gk~i~~~ 145 (162)
.++|+++++ ++|+++.+.
T Consensus 98 -~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 98 -EGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred -CCCCEEEEECCCCCEEchh
Confidence 999999988 589887654
No 97
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.40 E-value=1.7e-12 Score=93.76 Aligned_cols=98 Identities=18% Similarity=0.271 Sum_probs=73.5
Q ss_pred ccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-----------cHHHH
Q 031271 58 INEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-----------LPEAA 121 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-----------~~~l~ 121 (162)
.+++.+.+.+|+.+..++ |+|+|+||++||+ |....|.|+++.++|. ++.++.|..+. ...++
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~ 80 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFC 80 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHH
Confidence 578899999999886544 8999999999999 9999999999999996 38888886531 11233
Q ss_pred Hh-cCC----------------------CCCcc-----------EEEEE-cCCeEEEEEcCC-CHHHHHHH
Q 031271 122 KA-FDL----------------------IDVLP-----------TFVLV-KRGKEIDRVVGA-KKDELQMK 156 (162)
Q Consensus 122 ~~-~~i----------------------~~~~P-----------tiv~~-~~Gk~i~~~~g~-~~~~l~~~ 156 (162)
+. +++ ...+| +.+++ ++|+++.++.|. +++.|++.
T Consensus 81 ~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 81 ETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred HHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 32 331 03456 44445 899999999998 78777654
No 98
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.39 E-value=1e-12 Score=92.45 Aligned_cols=89 Identities=9% Similarity=0.139 Sum_probs=65.8
Q ss_pred eechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH---HHHH
Q 031271 25 LQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV---KDFA 101 (162)
Q Consensus 25 i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l---~~~~ 101 (162)
|+-..+|++.++.|++++|++ +|+|+++||++|+.|...+ .++.
T Consensus 6 i~W~~~~eeal~~Ak~~~Kpv---------------------------------mv~f~sdwC~~Ck~l~k~~f~~~eV~ 52 (130)
T cd02960 6 IIWVQTYEEGLYKAKKSNKPL---------------------------------MVIHHLEDCPHSQALKKAFAEHKEIQ 52 (130)
T ss_pred ccchhhHHHHHHHHHHCCCeE---------------------------------EEEEeCCcCHhHHHHHHHhhCCHHHH
Confidence 334458999999999999999 9999999999999998865 5555
Q ss_pred HhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC
Q 031271 102 AMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA 148 (162)
Q Consensus 102 ~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~ 148 (162)
+... ++..+.++.+....-....+ .++||++|+ ++|+++.++.|.
T Consensus 53 ~~l~~~Fv~V~l~~d~td~~~~~~g--~~vPtivFld~~g~vi~~i~Gy 99 (130)
T cd02960 53 KLAQEDFIMLNLVHETTDKNLSPDG--QYVPRIMFVDPSLTVRADITGR 99 (130)
T ss_pred HHHHhCeEEEEEEeccCCCCcCccC--cccCeEEEECCCCCCccccccc
Confidence 5442 46666676652211111234 589999999 799999888776
No 99
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.39 E-value=5e-12 Score=91.36 Aligned_cols=101 Identities=10% Similarity=0.103 Sum_probs=76.7
Q ss_pred ceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEEC--------CCc---HHHHHh
Q 031271 60 EMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDV--------DWL---PEAAKA 123 (162)
Q Consensus 60 ~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~--------d~~---~~l~~~ 123 (162)
++.+.+.+|+.+..++ |+++|+||++||++|+...|.+.++.++|. ++.++.|+. +.. ..++++
T Consensus 4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~ 83 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARR 83 (153)
T ss_pred cceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHH
Confidence 4678888888876544 888999999999999999999999999986 488888874 211 122322
Q ss_pred -cCC-------------------------CCCcc-----EEEEEcCCeEEEEEcCC-CHHHHHHHHHHH
Q 031271 124 -FDL-------------------------IDVLP-----TFVLVKRGKEIDRVVGA-KKDELQMKTEKR 160 (162)
Q Consensus 124 -~~i-------------------------~~~~P-----tiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~ 160 (162)
+++ ...+| ++++-++|+++.++.|. +.+.|.+.|++.
T Consensus 84 ~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 84 NYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred hcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 222 02478 45555999999999998 889999988875
No 100
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.5e-12 Score=108.81 Aligned_cols=98 Identities=23% Similarity=0.351 Sum_probs=75.1
Q ss_pred eeEEecCCC-eeeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC---cEEEEEECCCcHHHHHhcCCCCCccEEEEE
Q 031271 61 MVLNINDGG-NVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136 (162)
Q Consensus 61 ~~~~~~~~~-~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~---v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~ 136 (162)
..+-..+.+ .+....|.|+|.||||||++|+++.|.++++++.|.+ +.+.++|.+.|.- ....+ .++||+.++
T Consensus 369 kvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~~~~~-~~fPTI~~~ 445 (493)
T KOG0190|consen 369 KVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--PSLKV-DGFPTILFF 445 (493)
T ss_pred EEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--ccccc-cccceEEEe
Confidence 333344444 3355669999999999999999999999999999864 9999999998842 34567 889999999
Q ss_pred cCCe--EEEEEcCC-CHHHHHHHHHHHh
Q 031271 137 KRGK--EIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 137 ~~Gk--~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
+.|. ..-.+.|. +.+.|..+++++.
T Consensus 446 pag~k~~pv~y~g~R~le~~~~fi~~~a 473 (493)
T KOG0190|consen 446 PAGHKSNPVIYNGDRTLEDLKKFIKKSA 473 (493)
T ss_pred cCCCCCCCcccCCCcchHHHHhhhccCC
Confidence 7654 23334555 8999999988653
No 101
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.38 E-value=1e-11 Score=87.53 Aligned_cols=82 Identities=11% Similarity=0.046 Sum_probs=74.4
Q ss_pred EEEEecC--CChhhhhhhHHHHHHHHhcC-C-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271 79 VIYYTAA--WCGPCKFIEPYVKDFAAMYT-D-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL 153 (162)
Q Consensus 79 vv~F~a~--wC~~C~~~~~~l~~~~~~~~-~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l 153 (162)
+|+|-.+ -++.+....-+|++++++|+ + +.|++||+|++++++.+||| .++||+++|+||+.+.++.|. +.+.+
T Consensus 38 vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV-~siPTLl~FkdGk~v~~i~G~~~k~~l 116 (132)
T PRK11509 38 VVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGV-FRFPATLVFTGGNYRGVLNGIHPWAEL 116 (132)
T ss_pred EEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCC-ccCCEEEEEECCEEEEEEeCcCCHHHH
Confidence 5666544 67888888889999999998 3 89999999999999999999 999999999999999999998 89999
Q ss_pred HHHHHHHh
Q 031271 154 QMKTEKRR 161 (162)
Q Consensus 154 ~~~l~~~~ 161 (162)
.++|++++
T Consensus 117 ~~~I~~~L 124 (132)
T PRK11509 117 INLMRGLV 124 (132)
T ss_pred HHHHHHHh
Confidence 99999876
No 102
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.38 E-value=4.6e-12 Score=88.60 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=59.9
Q ss_pred ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECC---------------------------CcHHHHHhcCC
Q 031271 76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD---------------------------WLPEAAKAFDL 126 (162)
Q Consensus 76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d---------------------------~~~~l~~~~~i 126 (162)
|+++|+||++||++|+...|.|+++.++|.+ +.++.|+.+ ....+.+.|++
T Consensus 24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v 103 (126)
T cd03012 24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYGN 103 (126)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhCC
Confidence 5569999999999999999999999999974 777777541 22357778999
Q ss_pred CCCccEEEEE-cCCeEEEEEcCC
Q 031271 127 IDVLPTFVLV-KRGKEIDRVVGA 148 (162)
Q Consensus 127 ~~~~Ptiv~~-~~Gk~i~~~~g~ 148 (162)
..+|+++++ ++|+++.++.|.
T Consensus 104 -~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 104 -QYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred -CcCCeEEEECCCCcEEEEEecC
Confidence 999998888 799999988774
No 103
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.37 E-value=2.3e-12 Score=108.88 Aligned_cols=114 Identities=18% Similarity=0.293 Sum_probs=93.4
Q ss_pred CCCcccCCCce-eEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhh
Q 031271 12 HGFIHAKTPLV-MELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPC 90 (162)
Q Consensus 12 ~~~~~~~~~~v-~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C 90 (162)
+..+..+++.. +.+++..++++.+++++ +|+| +|+|||+||-.|
T Consensus 445 ~~~~~~~~~~~~q~~s~~~~L~~~la~~~--~~pV---------------------------------mlDfyAdWCvtC 489 (569)
T COG4232 445 EAAQSVSHGEFWQPISPLAELDQALAEAK--AKPV---------------------------------MLDFYADWCVTC 489 (569)
T ss_pred ccCCCCccchhhhccCCHHHHHHHHHhCC--CCcE---------------------------------EEeeehhHHHHh
Confidence 34444455555 67777779999998754 3688 999999999999
Q ss_pred hhhhHHH---HHHHHhcCCcEEEEEECCCc----HHHHHhcCCCCCccEEEEEc-CCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 91 KFIEPYV---KDFAAMYTDVQFIKIDVDWL----PEAAKAFDLIDVLPTFVLVK-RGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 91 ~~~~~~l---~~~~~~~~~v~f~~vd~d~~----~~l~~~~~i~~~~Ptiv~~~-~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
+.+++.. .+.+.+.+++..+++|++++ .++.++|++ -++|++++|. +|++.....|. +.+.+++++++..
T Consensus 490 K~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~-~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 490 KENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGV-FGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred HhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCC-CCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 9999977 55666778999999999865 468899999 9999999995 88888778898 9999999998764
No 104
>smart00594 UAS UAS domain.
Probab=99.36 E-value=1.1e-11 Score=86.59 Aligned_cols=95 Identities=18% Similarity=0.266 Sum_probs=77.8
Q ss_pred hhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH---HHHHHhcC
Q 031271 29 HQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV---KDFAAMYT 105 (162)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l---~~~~~~~~ 105 (162)
..|++.+++|+..+|++ +|+|+++||++|..+.... .++.+.+.
T Consensus 14 gs~~~a~~~Ak~~~K~~---------------------------------lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~ 60 (122)
T smart00594 14 GSLEAAKQEASRQRRLL---------------------------------WLYLHSQDSPDSQVFNRDVLCNEAVKSLIR 60 (122)
T ss_pred CCHHHHHHHHHhhcCCE---------------------------------EEEEeCCCCchHHHHHHHHccCHHHHHHHH
Confidence 57899999999999999 9999999999999987754 55555554
Q ss_pred -CcEEEEEECC--CcHHHHHhcCCCCCccEEEEE-cCC-----eEEEEEcCC-CHHHHHHHH
Q 031271 106 -DVQFIKIDVD--WLPEAAKAFDLIDVLPTFVLV-KRG-----KEIDRVVGA-KKDELQMKT 157 (162)
Q Consensus 106 -~v~f~~vd~d--~~~~l~~~~~i~~~~Ptiv~~-~~G-----k~i~~~~g~-~~~~l~~~l 157 (162)
++.+..+|++ +...++.+|++ .++|+++++ ++| +.+.++.|. ++++|...|
T Consensus 61 ~~fv~~~~dv~~~eg~~l~~~~~~-~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 61 ENFIFWQVDVDTSEGQRVSQFYKL-DSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred cCEEEEEecCCChhHHHHHHhcCc-CCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 4777778876 44578999999 999999988 565 467788898 899998776
No 105
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.33 E-value=2.4e-11 Score=89.20 Aligned_cols=104 Identities=22% Similarity=0.258 Sum_probs=81.0
Q ss_pred cccceeEEecCCCeeee----eCceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC--------------
Q 031271 57 CINEMVLNINDGGNVVF----WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-------------- 116 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~~----~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-------------- 116 (162)
..|++.+.+.+|+.+.. .++++||+||++||+.|....+.+.++.++|+ ++.|+.|..|.
T Consensus 3 ~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~ 82 (171)
T cd02969 3 PAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKA 82 (171)
T ss_pred cCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHH
Confidence 35678888888887743 34789999999999999999999999999997 48888887753
Q ss_pred ---------------cHHHHHhcCCCCCccEEEEE-cCCeEEEEEc---------C-CCHHHHHHHHHHHh
Q 031271 117 ---------------LPEAAKAFDLIDVLPTFVLV-KRGKEIDRVV---------G-AKKDELQMKTEKRR 161 (162)
Q Consensus 117 ---------------~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~---------g-~~~~~l~~~l~~~~ 161 (162)
...+++.|++ ..+|+++++ ++|+++.+.. + .+...+.+.|+..+
T Consensus 83 ~~~~~~~~~~~l~D~~~~~~~~~~v-~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 152 (171)
T cd02969 83 KAKEHGYPFPYLLDETQEVAKAYGA-ACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALL 152 (171)
T ss_pred HHHHCCCCceEEECCchHHHHHcCC-CcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHH
Confidence 1246778999 999988888 6898886531 1 14577888887664
No 106
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.33 E-value=2.3e-11 Score=90.52 Aligned_cols=78 Identities=17% Similarity=0.101 Sum_probs=60.4
Q ss_pred CceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEE------EEEECCC-----------------------------cHH
Q 031271 75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQF------IKIDVDW-----------------------------LPE 119 (162)
Q Consensus 75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f------~~vd~d~-----------------------------~~~ 119 (162)
.|+++|+|||+||++|+...|.++++..+ ++.+ ..||.|+ ...
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~ 136 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGA 136 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcch
Confidence 48899999999999999999999999653 3444 5555542 234
Q ss_pred HHHhcCCCCCccEE-EEE-cCCeEEEEEcCC-CHHHHHH
Q 031271 120 AAKAFDLIDVLPTF-VLV-KRGKEIDRVVGA-KKDELQM 155 (162)
Q Consensus 120 l~~~~~i~~~~Pti-v~~-~~Gk~i~~~~g~-~~~~l~~ 155 (162)
++..|++ .++|+. +++ ++|+++.++.|. +.+++++
T Consensus 137 v~~~~gv-~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 137 VKNAWQL-NSEDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred HHHhcCC-CCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 6678999 999855 444 899999999998 7766655
No 107
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.7e-11 Score=100.96 Aligned_cols=88 Identities=22% Similarity=0.350 Sum_probs=74.6
Q ss_pred eeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-C
Q 031271 72 VFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-K 149 (162)
Q Consensus 72 ~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~ 149 (162)
...+++++|.||++||++|+.+.|.+.+++..+.+ +.+..||++.+.+++..|+| .++||+.+|..|.....+.|. +
T Consensus 44 ~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i-~gfPtl~~f~~~~~~~~~~~~~~ 122 (383)
T KOG0191|consen 44 LKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGI-QGFPTLKVFRPGKKPIDYSGPRN 122 (383)
T ss_pred hccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCC-ccCcEEEEEcCCCceeeccCccc
Confidence 34446669999999999999999999999999988 99999999999999999999 999999999888444444555 7
Q ss_pred HHHHHHHHHHH
Q 031271 150 KDELQMKTEKR 160 (162)
Q Consensus 150 ~~~l~~~l~~~ 160 (162)
.+.+..++...
T Consensus 123 ~~~~~~~~~~~ 133 (383)
T KOG0191|consen 123 AESLAEFLIKE 133 (383)
T ss_pred HHHHHHHHHHh
Confidence 88887776653
No 108
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.29 E-value=4.2e-11 Score=85.22 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=77.7
Q ss_pred cccceeEEecCCCeeeee---CceEEEEEecCC-ChhhhhhhHHHHHHHHhcCCcEEEEEECCCc---------------
Q 031271 57 CINEMVLNINDGGNVVFW---VLKVVIYYTAAW-CGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL--------------- 117 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~---~k~vvv~F~a~w-C~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~--------------- 117 (162)
..|++.+.+.+|+.+..+ .|+++|+||+.| |++|+...+.|.++.++++++.++.|+.|..
T Consensus 5 ~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~ 84 (143)
T cd03014 5 KAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNV 84 (143)
T ss_pred CCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCc
Confidence 457889999999877654 489999999998 6999999999999999998899998888521
Q ss_pred --------HHHHHhcCCCCC------ccEEEEE-cCCeEEEEEcCC---CHHHHHHHH
Q 031271 118 --------PEAAKAFDLIDV------LPTFVLV-KRGKEIDRVVGA---KKDELQMKT 157 (162)
Q Consensus 118 --------~~l~~~~~i~~~------~Ptiv~~-~~Gk~i~~~~g~---~~~~l~~~l 157 (162)
..+++.||+ .. .|+.+++ ++|+++....|. +...+++.|
T Consensus 85 ~~l~D~~~~~~~~~~gv-~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 85 TTLSDFRDHSFGKAYGV-LIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred eEeecCcccHHHHHhCC-eeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 346677777 43 6776666 799999988865 344555444
No 109
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.28 E-value=2.8e-11 Score=85.53 Aligned_cols=99 Identities=18% Similarity=0.136 Sum_probs=77.8
Q ss_pred ccceeEEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC---------------
Q 031271 58 INEMVLNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW--------------- 116 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~--------------- 116 (162)
.|++.+.+.+|+.+..++ |+++|+|| +.||+.|....+.|.++.+.+. ++.++.|..|.
T Consensus 3 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~ 82 (140)
T cd03017 3 APDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPF 82 (140)
T ss_pred CCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCc
Confidence 467888888888775544 88999999 5899999999999999988774 48888887652
Q ss_pred ------cHHHHHhcCCCCCc---------cEEEEE-cCCeEEEEEcCC-CHHHHHHHH
Q 031271 117 ------LPEAAKAFDLIDVL---------PTFVLV-KRGKEIDRVVGA-KKDELQMKT 157 (162)
Q Consensus 117 ------~~~l~~~~~i~~~~---------Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l 157 (162)
...+++.||+ ... |+++++ ++|+++..+.|. ....+.+.+
T Consensus 83 ~~l~D~~~~~~~~~gv-~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 83 PLLSDPDGKLAKAYGV-WGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred eEEECCccHHHHHhCC-ccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 3357788998 877 887777 689999999998 555555543
No 110
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.28 E-value=8.8e-11 Score=86.22 Aligned_cols=105 Identities=14% Similarity=0.082 Sum_probs=80.9
Q ss_pred eeeccccceeEEecCCCeeeeeC---ceEEEEEecCC-ChhhhhhhHHHHHHHHhcCCcEEEEEECCC------------
Q 031271 53 CLIYCINEMVLNINDGGNVVFWV---LKVVIYYTAAW-CGPCKFIEPYVKDFAAMYTDVQFIKIDVDW------------ 116 (162)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~w-C~~C~~~~~~l~~~~~~~~~v~f~~vd~d~------------ 116 (162)
......|++.+.+.+|+.+..++ |+++|+||++| |++|....|.|.++.+++.++.++.|..|.
T Consensus 19 ~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~ 98 (167)
T PRK00522 19 QVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEG 98 (167)
T ss_pred CCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCC
Confidence 34455788999999998775544 89999999999 999999999999999998778888887752
Q ss_pred -----------cHHHHHhcCCCCCcc---------EEEEE-cCCeEEEEEcCC------CHHHHHHHHH
Q 031271 117 -----------LPEAAKAFDLIDVLP---------TFVLV-KRGKEIDRVVGA------KKDELQMKTE 158 (162)
Q Consensus 117 -----------~~~l~~~~~i~~~~P---------tiv~~-~~Gk~i~~~~g~------~~~~l~~~l~ 158 (162)
...+++.||+ ...| +.+++ ++|+++..+.+. +.++++++|+
T Consensus 99 ~~~~~~lsD~~~~~~~~~~gv-~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 99 LENVITLSDFRDHSFGKAYGV-AIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred CCCceEeecCCccHHHHHhCC-eecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 1267888998 7777 76666 799998887543 3455555543
No 111
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.28 E-value=3.7e-11 Score=89.48 Aligned_cols=105 Identities=20% Similarity=0.226 Sum_probs=78.7
Q ss_pred cccceeEEecCCCeeeeeC---ceE-EEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-------c-H---H
Q 031271 57 CINEMVLNINDGGNVVFWV---LKV-VIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-------L-P---E 119 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~---k~v-vv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-------~-~---~ 119 (162)
..|++.+.+.+|+.+..++ |+| ++.+|++||++|+...|.|+++.++|. ++.++.|++++ . . .
T Consensus 19 ~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~ 98 (183)
T PTZ00256 19 SFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKE 98 (183)
T ss_pred cccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHH
Confidence 4688999999999886654 655 456699999999999999999999886 48888887531 0 1 1
Q ss_pred H-HHhc------------------------------------CCCCCccE----EEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271 120 A-AKAF------------------------------------DLIDVLPT----FVLVKRGKEIDRVVGA-KKDELQMKT 157 (162)
Q Consensus 120 l-~~~~------------------------------------~i~~~~Pt----iv~~~~Gk~i~~~~g~-~~~~l~~~l 157 (162)
+ .+++ ++ ..+|+ +++-++|+++.++.|. +.+.+++.|
T Consensus 99 f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~-~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I 177 (183)
T PTZ00256 99 YVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEA-RQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDI 177 (183)
T ss_pred HHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccC-cccCcceEEEEECCCCCEEEEECCCCCHHHHHHHH
Confidence 1 1121 33 46783 5555899999999998 888898888
Q ss_pred HHHhC
Q 031271 158 EKRRN 162 (162)
Q Consensus 158 ~~~~~ 162 (162)
.+.++
T Consensus 178 ~~ll~ 182 (183)
T PTZ00256 178 EKLLN 182 (183)
T ss_pred HHHhc
Confidence 87753
No 112
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.28 E-value=3.2e-11 Score=83.39 Aligned_cols=86 Identities=30% Similarity=0.457 Sum_probs=73.0
Q ss_pred cccceeEEecCCCeeeeeC---ceEEEEEecC-CChhhhhhhHHHHHHHHhcC--CcEEEEEECCC--------------
Q 031271 57 CINEMVLNINDGGNVVFWV---LKVVIYYTAA-WCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-------------- 116 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~-wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-------------- 116 (162)
..|++.+.+.+|+.+..++ ++++|.||++ ||+.|....+.|.++.++|+ ++.++.|..|.
T Consensus 4 ~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~ 83 (124)
T PF00578_consen 4 KAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLP 83 (124)
T ss_dssp BGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCS
T ss_pred CCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccc
Confidence 4688999999999887765 8999999999 99999999999999999886 59999998863
Q ss_pred -------cHHHHHhcCCCC------CccEEEEE-cCCeEEE
Q 031271 117 -------LPEAAKAFDLID------VLPTFVLV-KRGKEID 143 (162)
Q Consensus 117 -------~~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~ 143 (162)
...+.+.|++ . .+|+++++ ++|+++.
T Consensus 84 ~~~~~D~~~~~~~~~~~-~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 84 FPVLSDPDGELAKAFGI-EDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp SEEEEETTSHHHHHTTC-EETTTSEESEEEEEEETTSBEEE
T ss_pred cccccCcchHHHHHcCC-ccccCCceEeEEEEECCCCEEEe
Confidence 3367888998 7 89987777 7888765
No 113
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.25 E-value=3.6e-11 Score=94.29 Aligned_cols=81 Identities=26% Similarity=0.400 Sum_probs=68.2
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--------C
Q 031271 78 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--------K 149 (162)
Q Consensus 78 vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--------~ 149 (162)
|||+||.+.++.|..|...|..++++|+.+.|++|..+..+ +..+|.+ ..+||+++|++|..+..++|. +
T Consensus 149 VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~-~~LPtllvYk~G~l~~~~V~l~~~~g~df~ 226 (265)
T PF02114_consen 149 VVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPD-KNLPTLLVYKNGDLIGNFVGLTDLLGDDFF 226 (265)
T ss_dssp EEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-T-TC-SEEEEEETTEEEEEECTGGGCT-TT--
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcc-cCCCEEEEEECCEEEEeEEehHHhcCCCCC
Confidence 39999999999999999999999999999999999998775 7889999 999999999999999998765 2
Q ss_pred HHHHHHHHHHH
Q 031271 150 KDELQMKTEKR 160 (162)
Q Consensus 150 ~~~l~~~l~~~ 160 (162)
...|+.+|.++
T Consensus 227 ~~dlE~~L~~~ 237 (265)
T PF02114_consen 227 TEDLEAFLIEY 237 (265)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHc
Confidence 55788777654
No 114
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.24 E-value=1.7e-11 Score=79.66 Aligned_cols=74 Identities=27% Similarity=0.543 Sum_probs=59.7
Q ss_pred hhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH---HHHHHhc-
Q 031271 29 HQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV---KDFAAMY- 104 (162)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l---~~~~~~~- 104 (162)
.++++.++.|++++|++ +|+|+++||++|+.+...+ .++.+.+
T Consensus 4 ~d~~~al~~A~~~~kpv---------------------------------lv~f~a~wC~~C~~l~~~~~~~~~v~~~~~ 50 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPV---------------------------------LVDFGADWCPPCKKLEREVFSDPEVQEALN 50 (82)
T ss_dssp SSHHHHHHHHHHHTSEE---------------------------------EEEEETTTTHHHHHHHHHTTTSHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCE---------------------------------EEEEECCCCHhHHHHHHHHcCCHHHHHHHH
Confidence 47889999999999999 9999999999999998877 5555523
Q ss_pred CCcEEEEEECCCcHHHHHhcCCCCCccEEEEEc
Q 031271 105 TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137 (162)
Q Consensus 105 ~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~ 137 (162)
.++.++.+|.+...... .+.. .++|+++++.
T Consensus 51 ~~fv~v~vd~~~~~~~~-~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 51 KNFVLVKVDVDDEDPNA-QFDR-QGYPTFFFLD 81 (82)
T ss_dssp HCSEEEEEETTTHHHHH-HHHH-CSSSEEEEEE
T ss_pred CCEEEEEEEcCCCChhH-HhCC-ccCCEEEEeC
Confidence 56999999998776544 3333 5799999874
No 115
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.19 E-value=3.7e-10 Score=81.43 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=76.8
Q ss_pred ccccceeEEecCCCeeeeeC---ceEEEEEecC-CChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-------------
Q 031271 56 YCINEMVLNINDGGNVVFWV---LKVVIYYTAA-WCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW------------- 116 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~-wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~------------- 116 (162)
...|++.+.+.+|+.+..++ |+++|+||+. ||+.|....+.|.++.+.+. ++.++.|..|.
T Consensus 8 ~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~ 87 (154)
T PRK09437 8 DIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELL 87 (154)
T ss_pred CcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Confidence 34678999999999775543 8899999976 78889999999998888874 48888887752
Q ss_pred --------cHHHHHhcCCCCCc------------cEEEEE-cCCeEEEEEcCC-CHHHHHHHHHH
Q 031271 117 --------LPEAAKAFDLIDVL------------PTFVLV-KRGKEIDRVVGA-KKDELQMKTEK 159 (162)
Q Consensus 117 --------~~~l~~~~~i~~~~------------Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~ 159 (162)
...+++.||+ ... |+.+++ ++|+++..+.|. ..+.+.+.++.
T Consensus 88 ~~~~l~D~~~~~~~~~gv-~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~~ 151 (154)
T PRK09437 88 NFTLLSDEDHQVAEQFGV-WGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLDY 151 (154)
T ss_pred CCeEEECCCchHHHHhCC-CcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHHH
Confidence 2357778887 554 555555 799999999988 34444444443
No 116
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.18 E-value=2.4e-10 Score=71.57 Aligned_cols=69 Identities=30% Similarity=0.537 Sum_probs=56.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 154 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~ 154 (162)
+..|+++||++|+++.+.|++ .++.+..+|++.++. +.+.+++ ..+|++++. |+. +.|.+++.|.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~--~~~---~~g~~~~~i~ 70 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIG--HKI---IVGFDPEKLD 70 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEEC--CEE---EeeCCHHHHH
Confidence 567999999999999988876 368899999987654 4567999 999999874 654 6688888888
Q ss_pred HHHH
Q 031271 155 MKTE 158 (162)
Q Consensus 155 ~~l~ 158 (162)
++|+
T Consensus 71 ~~i~ 74 (74)
T TIGR02196 71 QLLE 74 (74)
T ss_pred HHhC
Confidence 8763
No 117
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.11 E-value=5.3e-10 Score=74.52 Aligned_cols=82 Identities=34% Similarity=0.667 Sum_probs=67.4
Q ss_pred CceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECC-CcHHHHHhcC--CCCCccEEEEEcCCeEEEEEcC--C
Q 031271 75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD-WLPEAAKAFD--LIDVLPTFVLVKRGKEIDRVVG--A 148 (162)
Q Consensus 75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d-~~~~l~~~~~--i~~~~Ptiv~~~~Gk~i~~~~g--~ 148 (162)
++++++.||++||++|+.+.|.+.++.++++. +.++.++.. ....+...|+ + ..+|+++++.+|..+....+ .
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~ 110 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAV-RSIPTLLLFKDGKEVDRLVGGKV 110 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhh-ccCCeEEEEeCcchhhhhhhccc
Confidence 45669999999999999999999999999985 999999997 8889999999 8 99999998888876665555 3
Q ss_pred -CHHHHHHHH
Q 031271 149 -KKDELQMKT 157 (162)
Q Consensus 149 -~~~~l~~~l 157 (162)
....+....
T Consensus 111 ~~~~~~~~~~ 120 (127)
T COG0526 111 LPKEALIDAL 120 (127)
T ss_pred CCHHHHHHHh
Confidence 444444433
No 118
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.7e-10 Score=93.81 Aligned_cols=101 Identities=25% Similarity=0.355 Sum_probs=82.7
Q ss_pred ceeEEecCCCe-eeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcC---CcEEEEEECCCcHHHHHhcCCCCCccEEEE
Q 031271 60 EMVLNINDGGN-VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDWLPEAAKAFDLIDVLPTFVL 135 (162)
Q Consensus 60 ~~~~~~~~~~~-~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~---~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~ 135 (162)
.+.+...+... +...+.++++.||+|||++|+.+.|.++++++.+. .+.+..+|++....+++++++ ..+||+++
T Consensus 146 v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v-~~~Pt~~~ 224 (383)
T KOG0191|consen 146 VFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEV-RGYPTLKL 224 (383)
T ss_pred eEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcc-cCCceEEE
Confidence 34444444443 44566778999999999999999999999999874 399999999999999999999 99999999
Q ss_pred EcCCeE-EEEEcCC-CHHHHHHHHHHHh
Q 031271 136 VKRGKE-IDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 136 ~~~Gk~-i~~~~g~-~~~~l~~~l~~~~ 161 (162)
|++|.. .....+. +.+.+..++.+..
T Consensus 225 f~~~~~~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 225 FPPGEEDIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred ecCCCcccccccccccHHHHHHHHHhhc
Confidence 987777 5556665 8999999988653
No 119
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.10 E-value=1.3e-09 Score=77.76 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=71.4
Q ss_pred ccccceeEEecCCCeeeeeC----ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECC-------------
Q 031271 56 YCINEMVLNINDGGNVVFWV----LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD------------- 115 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~----k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d------------- 115 (162)
...|++.+.+.+|+.+..++ ++++|.|| ++||+.|....|.+.++.+++. ++.++.|..+
T Consensus 5 ~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~ 84 (149)
T cd03018 5 DKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENG 84 (149)
T ss_pred CcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcC
Confidence 34678888888999775543 77888887 8999999999999999998885 4888887664
Q ss_pred --------Cc--HHHHHhcCCCCC----cc--EEEEE-cCCeEEEEEcCCC
Q 031271 116 --------WL--PEAAKAFDLIDV----LP--TFVLV-KRGKEIDRVVGAK 149 (162)
Q Consensus 116 --------~~--~~l~~~~~i~~~----~P--tiv~~-~~Gk~i~~~~g~~ 149 (162)
.. ..+++.|++ .. +| +++++ ++|+++.++.|.+
T Consensus 85 ~~~~~~~D~~~~~~~~~~~g~-~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 85 LTFPLLSDFWPHGEVAKAYGV-FDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred CCceEecCCCchhHHHHHhCC-ccccCCCccceEEEECCCCEEEEEEecCC
Confidence 22 467788888 63 33 65666 7999999888763
No 120
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.10 E-value=1.7e-09 Score=79.67 Aligned_cols=102 Identities=10% Similarity=0.065 Sum_probs=74.2
Q ss_pred ccceeEEecCC----Ceeeee---CceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc----------
Q 031271 58 INEMVLNINDG----GNVVFW---VLKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL---------- 117 (162)
Q Consensus 58 ~~~~~~~~~~~----~~~~~~---~k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~---------- 117 (162)
.|++.+.+.+| +.+..+ .|++||+|| ++||+.|....+.|.++.++|. ++.++.|..|..
T Consensus 5 aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~ 84 (173)
T cd03015 5 APDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTP 84 (173)
T ss_pred CCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhh
Confidence 46777777666 444433 388899999 8999999999999999998885 477777766532
Q ss_pred ------------------HHHHHhcCCCC------CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHHH
Q 031271 118 ------------------PEAAKAFDLID------VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEKR 160 (162)
Q Consensus 118 ------------------~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~~ 160 (162)
..+++.|++ . .+|+.+++ ++|++...+.+. +.+++.+.|++.
T Consensus 85 ~~~~~~~~~~f~~l~D~~~~~~~~~gv-~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 85 RKEGGLGKINFPLLADPKKKISRDYGV-LDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred hhhCCccCcceeEEECCchhHHHHhCC-ccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 245567776 5 56777777 799998888543 356677777643
No 121
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.09 E-value=1.3e-09 Score=77.59 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=45.6
Q ss_pred ccceeEEecCCCeeeee----CceEEEEE-ecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECC
Q 031271 58 INEMVLNINDGGNVVFW----VLKVVIYY-TAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD 115 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~~~----~k~vvv~F-~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d 115 (162)
.|++.+.+.+|+.+..+ .++++|.| |++||++|+...|.|.++.+++. ++.++.|..+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~ 66 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE 66 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC
Confidence 46788888888877542 35555555 69999999999999999999884 5888888775
No 122
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.07 E-value=5.7e-10 Score=82.49 Aligned_cols=69 Identities=29% Similarity=0.450 Sum_probs=67.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA 148 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~ 148 (162)
|+.||-+.-..|+-|...|+.+++.+.+..|++|++...|-++.+++| ..+|++++|+||+.+++++|+
T Consensus 88 VcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~I-kVLP~v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 88 VCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNI-KVLPTVALFKNGKTVDYVVGF 156 (211)
T ss_pred EEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeee-eEeeeEEEEEcCEEEEEEeeH
Confidence 799999999999999999999999999999999999999999999999 999999999999999999887
No 123
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.03 E-value=1.4e-09 Score=75.50 Aligned_cols=100 Identities=17% Similarity=0.319 Sum_probs=63.8
Q ss_pred eechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecC-------CChhhhhhhHHH
Q 031271 25 LQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAA-------WCGPCKFIEPYV 97 (162)
Q Consensus 25 i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~-------wC~~C~~~~~~l 97 (162)
+..-+++.+.++.....++++ +|+|+++ |||.|....|.+
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~---------------------------------fl~F~gs~d~~g~sWCPDC~~aep~v 48 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPL---------------------------------FLLFTGSKDETGQSWCPDCVAAEPVV 48 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEE---------------------------------EEEEE--B-TTS-BSSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeE---------------------------------EEEEEccCCCCCCcccHHHHHHHHHH
Confidence 345678888888766666777 8888865 999999999999
Q ss_pred HHHHHhcCC-cEEEEEECCC-------cHHHHH--hcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHH
Q 031271 98 KDFAAMYTD-VQFIKIDVDW-------LPEAAK--AFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE 158 (162)
Q Consensus 98 ~~~~~~~~~-v~f~~vd~d~-------~~~l~~--~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~ 158 (162)
++.....++ ..|+.|.+.. +..+.. ++++ .++||++-+.+++.+....-.+.+.|+.+++
T Consensus 49 ~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l-~~IPTLi~~~~~~rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 49 EKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL-KGIPTLIRWETGERLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp HHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC----SSSEEEECTSS-EEEHHHHH-HHHHHHHHH
T ss_pred HHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee-eecceEEEECCCCccchhhhccHHHHHHHhc
Confidence 998887764 8888888743 234555 6999 9999999998774432111115666666654
No 124
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.03 E-value=3.6e-09 Score=79.04 Aligned_cols=102 Identities=15% Similarity=0.072 Sum_probs=74.5
Q ss_pred cccceeEEe-cCCC--eeee---eCceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-----------
Q 031271 57 CINEMVLNI-NDGG--NVVF---WVLKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW----------- 116 (162)
Q Consensus 57 ~~~~~~~~~-~~~~--~~~~---~~k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~----------- 116 (162)
..|+|.+.+ .+|+ .+.. ..|+|||+|| ++||+.|....+.|.++.+++. ++.++.|..|.
T Consensus 7 ~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~ 86 (187)
T TIGR03137 7 EIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTS 86 (187)
T ss_pred cCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhh
Confidence 468888887 5666 3432 3488999999 9999999999999999888874 57777777653
Q ss_pred --------------cHHHHHhcCCCC------CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHH
Q 031271 117 --------------LPEAAKAFDLID------VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEK 159 (162)
Q Consensus 117 --------------~~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~ 159 (162)
...+++.||+ . ..|+.+++ ++|++.....+. +.+++.+.|++
T Consensus 87 ~~~~~l~fpllsD~~~~~a~~~gv-~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 87 EAIGKITYPMLGDPTGVLTRNFGV-LIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred hhccCcceeEEECCccHHHHHhCC-cccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 2356778887 5 35866666 799988876432 56777777654
No 125
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.03 E-value=2.4e-09 Score=75.55 Aligned_cols=91 Identities=21% Similarity=0.247 Sum_probs=71.7
Q ss_pred ccceeEEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhc--CCcEEEEEECCC---------------
Q 031271 58 INEMVLNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMY--TDVQFIKIDVDW--------------- 116 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~--~~v~f~~vd~d~--------------- 116 (162)
.|++.+.+.+|+.+..++ ++++|+|| +.||+.|....+.|.++.+++ .++.|+.|..+.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~ 81 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLN 81 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCC
Confidence 477888888888876654 88999999 789999999999999998887 358888887752
Q ss_pred -------cHHHHHhcCCCCCcc---------EEEEE-cCCeEEEEEcCCC
Q 031271 117 -------LPEAAKAFDLIDVLP---------TFVLV-KRGKEIDRVVGAK 149 (162)
Q Consensus 117 -------~~~l~~~~~i~~~~P---------tiv~~-~~Gk~i~~~~g~~ 149 (162)
...+++.||+ ...| +++++ ++|+++.++.|..
T Consensus 82 ~~~l~D~~~~~~~~~g~-~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 82 FPLLSDPDGEFAKAYGV-LIEKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred ceEEECCChHHHHHcCC-ccccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 2357778887 6665 55555 6899999988874
No 126
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.6e-09 Score=75.34 Aligned_cols=79 Identities=19% Similarity=0.354 Sum_probs=65.9
Q ss_pred EEEEecCCChhhhhhhHHH---HHHHHhcCC-cEEEEEECC----------------CcHHHHHhcCCCCCccEEEEE-c
Q 031271 79 VIYYTAAWCGPCKFIEPYV---KDFAAMYTD-VQFIKIDVD----------------WLPEAAKAFDLIDVLPTFVLV-K 137 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l---~~~~~~~~~-v~f~~vd~d----------------~~~~l~~~~~i~~~~Ptiv~~-~ 137 (162)
++.|.++.|++|.++...+ +++++-+.. +.++.+++. ...+|++.|++ +++||+++| +
T Consensus 46 llmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v-rstPtfvFfdk 124 (182)
T COG2143 46 LLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV-RSTPTFVFFDK 124 (182)
T ss_pred EEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc-ccCceEEEEcC
Confidence 9999999999999998877 555555543 888888774 23489999999 999999999 6
Q ss_pred CCeEEEEEcCC-CHHHHHHHHH
Q 031271 138 RGKEIDRVVGA-KKDELQMKTE 158 (162)
Q Consensus 138 ~Gk~i~~~~g~-~~~~l~~~l~ 158 (162)
+|+.+..+.|+ .++++...++
T Consensus 125 ~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 125 TGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred CCCEEEecCCCCCHHHHHHHHH
Confidence 89999999999 8998877664
No 127
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.02 E-value=1.3e-09 Score=76.89 Aligned_cols=80 Identities=25% Similarity=0.435 Sum_probs=54.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhc---CCCCCccEEEEE-cCCeEEEEEcCCCHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF---DLIDVLPTFVLV-KRGKEIDRVVGAKKDELQ 154 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~---~i~~~~Ptiv~~-~~Gk~i~~~~g~~~~~l~ 154 (162)
++.|..+|||.|++..|.+.++++..|++.+-.+..|.++++..+| |. ..+|+++++ .+|+.+.++. ..|..+.
T Consensus 45 ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~-~~IP~~I~~d~~~~~lg~wg-erP~~~~ 122 (129)
T PF14595_consen 45 ILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGG-RSIPTFIFLDKDGKELGRWG-ERPKEVQ 122 (129)
T ss_dssp EEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS---SSEEEEE-TT--EEEEEE-SS-HHHH
T ss_pred EEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCC-eecCEEEEEcCCCCEeEEEc-CCCHHHh
Confidence 7889999999999999999999999999888888888888877665 56 899999999 5788888774 4466666
Q ss_pred HHHHHH
Q 031271 155 MKTEKR 160 (162)
Q Consensus 155 ~~l~~~ 160 (162)
+++.++
T Consensus 123 ~~~~~~ 128 (129)
T PF14595_consen 123 ELVDEY 128 (129)
T ss_dssp ------
T ss_pred hccccC
Confidence 666543
No 128
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.02 E-value=2.7e-09 Score=67.69 Aligned_cols=70 Identities=17% Similarity=0.341 Sum_probs=53.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHh-----cCCCCCccEEEEEcCCeEEEEEcCCCHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKA-----FDLIDVLPTFVLVKRGKEIDRVVGAKKDEL 153 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~-----~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l 153 (162)
+..||++||++|+++.+.|.+. ++.|-.+|+++.+..... +++ ..+|++ ++.+|+.+. ..+..++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i-~~~~g~~l~---~~~~~~~ 71 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTV-KFADGSFLT---NPSAAQV 71 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEE-EECCCeEec---CCCHHHH
Confidence 5779999999999999998775 455667888877766555 388 999997 467886543 5566777
Q ss_pred HHHHH
Q 031271 154 QMKTE 158 (162)
Q Consensus 154 ~~~l~ 158 (162)
.+.|+
T Consensus 72 ~~~l~ 76 (77)
T TIGR02200 72 KAKLQ 76 (77)
T ss_pred HHHhh
Confidence 76664
No 129
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.01 E-value=2.1e-09 Score=80.16 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=48.2
Q ss_pred cccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECC
Q 031271 57 CINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD 115 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d 115 (162)
+..++.+.+.+|+.+..++ |+|||.|||+||++|.. .+.|+++.++|. ++.++.+.++
T Consensus 4 ~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 4 SILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 4567888899999886655 89999999999999974 889999999986 4888888763
No 130
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=8.7e-09 Score=71.22 Aligned_cols=102 Identities=22% Similarity=0.330 Sum_probs=84.1
Q ss_pred eeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHH
Q 031271 22 VMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFA 101 (162)
Q Consensus 22 v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~ 101 (162)
+..+.|.++.++.+.. +..+++ +|.|...|-+.|.+|...|.+++
T Consensus 5 Lp~L~s~~~VdqaI~~--t~~rlv---------------------------------ViRFGr~~Dp~C~~mD~~L~~i~ 49 (142)
T KOG3414|consen 5 LPTLHSGWEVDQAILS--TEERLV---------------------------------VIRFGRDWDPTCMKMDELLSSIA 49 (142)
T ss_pred ccccccHHHHHHHHhc--ccceEE---------------------------------EEEecCCCCchHhhHHHHHHHHH
Confidence 4567788888888874 567888 99999999999999999999999
Q ss_pred HhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEE---------EEcCC--CHHHHHHHHHH
Q 031271 102 AMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEID---------RVVGA--KKDELQMKTEK 159 (162)
Q Consensus 102 ~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~---------~~~g~--~~~~l~~~l~~ 159 (162)
+...+ +.++.||+|+-+++.+.|++ ...|++++|-+++.+. ++.+. +..++++.++-
T Consensus 50 ~~vsnfa~IylvdideV~~~~~~~~l-~~p~tvmfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 50 EDVSNFAVIYLVDIDEVPDFVKMYEL-YDPPTVMFFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIET 118 (142)
T ss_pred HHHhhceEEEEEecchhhhhhhhhcc-cCCceEEEEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHH
Confidence 99988 88889999999999999999 9999999887776554 23333 45666666654
No 131
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.98 E-value=2.9e-09 Score=75.31 Aligned_cols=58 Identities=22% Similarity=0.297 Sum_probs=48.6
Q ss_pred ccceeEEecCCCeeeee---CceEEEEEecCCChh-hhhhhHHHHHHHHhcCC-----cEEEEEECC
Q 031271 58 INEMVLNINDGGNVVFW---VLKVVIYYTAAWCGP-CKFIEPYVKDFAAMYTD-----VQFIKIDVD 115 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~~~---~k~vvv~F~a~wC~~-C~~~~~~l~~~~~~~~~-----v~f~~vd~d 115 (162)
.|++.+.+.+|+.+..+ .++++|+||++||++ |....+.+.++.+++.+ +.++.|..|
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 47788999999877553 488999999999998 99999999999888743 788888764
No 132
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.98 E-value=3.6e-09 Score=77.08 Aligned_cols=84 Identities=19% Similarity=0.382 Sum_probs=59.0
Q ss_pred hhH-HHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhH-HH--HHHHHhc
Q 031271 29 HQW-RSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEP-YV--KDFAAMY 104 (162)
Q Consensus 29 ~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~-~l--~~~~~~~ 104 (162)
..| ++.++.|++++|++ +|.++.+||..|+.|.. .| .++++.+
T Consensus 23 ~~w~~ea~~~Ak~e~KpI---------------------------------fl~ig~~~C~wChvM~~esf~d~eVa~~l 69 (163)
T PF03190_consen 23 QPWGEEALEKAKKENKPI---------------------------------FLSIGYSWCHWCHVMERESFSDPEVAEYL 69 (163)
T ss_dssp B-SSHHHHHHHHHHT--E---------------------------------EEEEE-TT-HHHHHHHHHTTT-HHHHHHH
T ss_pred ccCCHHHHHHHHhcCCcE---------------------------------EEEEEecCCcchhhhcccCcCCHHHHHHH
Confidence 445 47888888999999 99999999999999875 34 5555555
Q ss_pred C-CcEEEEEECCCcHHHHHhc--------CCCCCccEEEEE-cCCeEEEEEc
Q 031271 105 T-DVQFIKIDVDWLPEAAKAF--------DLIDVLPTFVLV-KRGKEIDRVV 146 (162)
Q Consensus 105 ~-~v~f~~vd~d~~~~l~~~~--------~i~~~~Ptiv~~-~~Gk~i~~~~ 146 (162)
. ++.-++||.++.|++...| |. .++|+.+|. ++|+++....
T Consensus 70 N~~FI~VkvDree~Pdid~~y~~~~~~~~~~-gGwPl~vfltPdg~p~~~~t 120 (163)
T PF03190_consen 70 NRNFIPVKVDREERPDIDKIYMNAVQAMSGS-GGWPLTVFLTPDGKPFFGGT 120 (163)
T ss_dssp HHH-EEEEEETTT-HHHHHHHHHHHHHHHS----SSEEEEE-TTS-EEEEES
T ss_pred hCCEEEEEeccccCccHHHHHHHHHHHhcCC-CCCCceEEECCCCCeeeeee
Confidence 3 3888899999999999888 78 999988877 8999987643
No 133
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=7.5e-10 Score=83.34 Aligned_cols=102 Identities=20% Similarity=0.403 Sum_probs=84.1
Q ss_pred CCCcccCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhh
Q 031271 12 HGFIHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCK 91 (162)
Q Consensus 12 ~~~~~~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~ 91 (162)
+.+...+...++-.+..+.+++.+.. +..+.+ +|.|++.|.+.|+
T Consensus 116 ~eP~y~gpe~ikyf~~~q~~deel~r--nk~t~W---------------------------------lIeFfa~ws~~Cv 160 (265)
T KOG0914|consen 116 PEPAYSGPETIKYFTNMQLEDEELDR--NKRTYW---------------------------------LIEFFACWSPKCV 160 (265)
T ss_pred CccccCCchheeeecchhhHHHHhcc--CCceEE---------------------------------EEEEEeecChhhc
Confidence 34455567777777777777777764 335556 9999999999999
Q ss_pred hhhHHHHHHHHhcCC--cEEEEEECCCcHHHHHhcCC-----CCCccEEEEEcCCeEEEEEcCC
Q 031271 92 FIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDL-----IDVLPTFVLVKRGKEIDRVVGA 148 (162)
Q Consensus 92 ~~~~~l~~~~~~~~~--v~f~~vd~d~~~~l~~~~~i-----~~~~Ptiv~~~~Gk~i~~~~g~ 148 (162)
...|.+.++..+|.. ..|.+||+..-++.+.+|+| .+.+||+++|.+|+++.|....
T Consensus 161 ~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE~~RrP~v 224 (265)
T KOG0914|consen 161 RFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKEVSRRPDV 224 (265)
T ss_pred ccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchhhhcCccc
Confidence 999999999999964 99999999999999999987 3589999999999998876433
No 134
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=6.8e-10 Score=93.50 Aligned_cols=60 Identities=22% Similarity=0.476 Sum_probs=53.0
Q ss_pred eEEEEEecCCChhhhhhhHHHHHHHHhcCC----cEEEEEECC--CcHHHHHhcCCCCCccEEEEEc
Q 031271 77 KVVIYYTAAWCGPCKFIEPYVKDFAAMYTD----VQFIKIDVD--WLPEAAKAFDLIDVLPTFVLVK 137 (162)
Q Consensus 77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~----v~f~~vd~d--~~~~l~~~~~i~~~~Ptiv~~~ 137 (162)
-.+|.||++||++|+++.|.++++++.... +.+..||+- .|..+|+.|+| ..+|++.+|+
T Consensus 59 ~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V-~~~Ptlryf~ 124 (606)
T KOG1731|consen 59 AKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSV-SGYPTLRYFP 124 (606)
T ss_pred hHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCC-CCCceeeecC
Confidence 338999999999999999999999997754 788888874 67899999999 9999999994
No 135
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.87 E-value=1.6e-08 Score=60.07 Aligned_cols=60 Identities=28% Similarity=0.630 Sum_probs=51.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHH---hcCCCCCccEEEEEcCC
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAK---AFDLIDVLPTFVLVKRG 139 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~---~~~i~~~~Ptiv~~~~G 139 (162)
++.||++||+.|..+.+.+.++....+++.+..++++....... .+++ ..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV-GGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC-ccccEEEEEeCC
Confidence 47899999999999999999984444569999999998876654 8899 999999999776
No 136
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.86 E-value=4.2e-08 Score=67.95 Aligned_cols=96 Identities=17% Similarity=0.242 Sum_probs=75.1
Q ss_pred hHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecC----CChhhhhh--hHHHHHHHHh
Q 031271 30 QWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAA----WCGPCKFI--EPYVKDFAAM 103 (162)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~----wC~~C~~~--~~~l~~~~~~ 103 (162)
.|++.+..++++.|++ +|++|++ ||..|+.. .|.+.++..
T Consensus 5 s~~eAl~~ak~e~K~l---------------------------------lVylhs~~~~~~~~fc~~~l~~~~v~~~ln- 50 (116)
T cd02991 5 TYSQALNDAKQELRFL---------------------------------LVYLHGDDHQDTDEFCRNTLCAPEVIEYIN- 50 (116)
T ss_pred cHHHHHHHHHhhCCEE---------------------------------EEEEeCCCCccHHHHHHHHcCCHHHHHHHH-
Confidence 5788899999999999 9999999 89999755 233333333
Q ss_pred cCCcEEEEEECCCc--HHHHHhcCCCCCccEEEEE--cC--CeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 104 YTDVQFIKIDVDWL--PEAAKAFDLIDVLPTFVLV--KR--GKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 104 ~~~v~f~~vd~d~~--~~l~~~~~i~~~~Ptiv~~--~~--Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
.++.+...|++.. ..++..+++ ..+|+++++ ++ .+++.++.|. ++++|...|+...
T Consensus 51 -~~fv~w~~dv~~~eg~~la~~l~~-~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 51 -TRMLFWACSVAKPEGYRVSQALRE-RTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred -cCEEEEEEecCChHHHHHHHHhCC-CCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 2488888888743 468899999 999998887 23 3568899999 9999999888754
No 137
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.86 E-value=3.7e-08 Score=74.49 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=72.7
Q ss_pred cccceeEEecCCCeeeee---CceEEE-EEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC--------------
Q 031271 57 CINEMVLNINDGGNVVFW---VLKVVI-YYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-------------- 116 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~---~k~vvv-~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-------------- 116 (162)
..|+|.+.+.+| .+..+ +|.++| +||++||+.|....+.|.++.+++. ++.++.|.+|.
T Consensus 7 ~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~ 85 (202)
T PRK13190 7 KAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEER 85 (202)
T ss_pred CCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHh
Confidence 356777777666 34333 355555 6899999999999999999888885 47777776652
Q ss_pred -------------cHHHHHhcCCCC------CccEEEEE-cCCeEEEEE-----cCCCHHHHHHHHHHH
Q 031271 117 -------------LPEAAKAFDLID------VLPTFVLV-KRGKEIDRV-----VGAKKDELQMKTEKR 160 (162)
Q Consensus 117 -------------~~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~-----~g~~~~~l~~~l~~~ 160 (162)
...+++.||+ . .+|+.+++ ++|++.... .|.+.+++...|+.+
T Consensus 86 ~g~~~~fPll~D~~~~ia~~ygv-~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 86 FGIKIPFPVIADIDKELAREYNL-IDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred cCCCceEEEEECCChHHHHHcCC-ccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 2356677776 4 47987777 688877655 244788888888754
No 138
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.85 E-value=7.2e-08 Score=73.66 Aligned_cols=77 Identities=26% Similarity=0.417 Sum_probs=65.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC-----------CcHHHHHhcCCCCCccEEEEE-cCC-eEEEEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-----------WLPEAAKAFDLIDVLPTFVLV-KRG-KEIDRV 145 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d-----------~~~~l~~~~~i~~~~Ptiv~~-~~G-k~i~~~ 145 (162)
+++||.+.|++|+.+.|.+..++++| ++.++.|++| .+..+++++|+ ..+|+++++ +++ +...-.
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v-~~~Pal~Lv~~~~~~~~pv~ 201 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV-KVTPALFLVNPNTKKWYPVS 201 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC-CcCCEEEEEECCCCeEEEEe
Confidence 89999999999999999999999999 8888888887 35789999999 999998877 555 555555
Q ss_pred cCC-CHHHHHHHH
Q 031271 146 VGA-KKDELQMKT 157 (162)
Q Consensus 146 ~g~-~~~~l~~~l 157 (162)
.|. +.++|.+-|
T Consensus 202 ~G~~s~~~L~~ri 214 (215)
T PF13728_consen 202 QGFMSLDELEDRI 214 (215)
T ss_pred eecCCHHHHHHhh
Confidence 677 888887654
No 139
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.83 E-value=1e-08 Score=73.90 Aligned_cols=68 Identities=22% Similarity=0.572 Sum_probs=53.2
Q ss_pred ceEEEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCc-------------------------HHHHHhcCC
Q 031271 76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWL-------------------------PEAAKAFDL 126 (162)
Q Consensus 76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~-------------------------~~l~~~~~i 126 (162)
|.|.++|.|.||++|+.+.|.|.++.++.. .+.++.|+-|.. .++.++|++
T Consensus 34 KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v 113 (157)
T KOG2501|consen 34 KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEV 113 (157)
T ss_pred cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhccc
Confidence 555999999999999999999977766543 366666666532 368889999
Q ss_pred CCCccEEEEE-cCCeEEEE
Q 031271 127 IDVLPTFVLV-KRGKEIDR 144 (162)
Q Consensus 127 ~~~~Ptiv~~-~~Gk~i~~ 144 (162)
..+|++++. ++|..+..
T Consensus 114 -~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 114 -KGIPALVILKPDGTVVTE 131 (157)
T ss_pred -CcCceeEEecCCCCEehH
Confidence 999998877 78977754
No 140
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.81 E-value=7.7e-08 Score=61.57 Aligned_cols=69 Identities=25% Similarity=0.417 Sum_probs=56.3
Q ss_pred ecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcC-C-CHHHHHHHHH
Q 031271 83 TAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVG-A-KKDELQMKTE 158 (162)
Q Consensus 83 ~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g-~-~~~~l~~~l~ 158 (162)
++++|+.|..+...++++...+ ++.+-.+|....+++ .+||+ .++|++++ ||+.+ +.| . +.++|+++|+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~-~i~~ei~~~~~~~~~-~~ygv-~~vPalvI--ng~~~--~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEEL-GIEVEIIDIEDFEEI-EKYGV-MSVPALVI--NGKVV--FVGRVPSKEELKELLE 76 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHT-TEEEEEEETTTHHHH-HHTT--SSSSEEEE--TTEEE--EESS--HHHHHHHHHH
T ss_pred eCCCCCCcHHHHHHHHHHHHhc-CCeEEEEEccCHHHH-HHcCC-CCCCEEEE--CCEEE--EEecCCCHHHHHHHhC
Confidence 6788999999999999999988 577777788666666 99999 99999976 88765 457 4 7899998875
No 141
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.80 E-value=7.1e-08 Score=62.92 Aligned_cols=75 Identities=13% Similarity=0.295 Sum_probs=58.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH----HHHHhcC--CCCCccEEEEEcCCeEEEEEcCCCHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP----EAAKAFD--LIDVLPTFVLVKRGKEIDRVVGAKKDE 152 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~----~l~~~~~--i~~~~Ptiv~~~~Gk~i~~~~g~~~~~ 152 (162)
+..|+.+||++|.++.+.|+++..++.++.+..+|++..+ ++...++ . ..+|++++ +|+.+. | .++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~-~~vP~ifi--~g~~ig---g--~~~ 74 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPV-ETVPQIFV--DQKHIG---G--CTD 74 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCC-CcCCEEEE--CCEEEc---C--HHH
Confidence 6789999999999999999999988778999999998653 5555554 5 68999864 887653 2 466
Q ss_pred HHHHHHHHh
Q 031271 153 LQMKTEKRR 161 (162)
Q Consensus 153 l~~~l~~~~ 161 (162)
|.+++++++
T Consensus 75 ~~~~~~~~~ 83 (85)
T PRK11200 75 FEAYVKENL 83 (85)
T ss_pred HHHHHHHhc
Confidence 777777664
No 142
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=6.3e-09 Score=78.67 Aligned_cols=80 Identities=28% Similarity=0.509 Sum_probs=72.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE 158 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~ 158 (162)
+++||++||.+|.++...++.+++..+++.|++.+.++.++++..+.+ ...|.++++.+|+.+.+..|.++..+...+.
T Consensus 21 ~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v-~~vp~~~~~~~~~~v~~l~~~~~~~~~~~~~ 99 (227)
T KOG0911|consen 21 VLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAV-EAVPYFVFFFLGEKVDRLSGADPPFLVSKVE 99 (227)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHH-hcCceeeeeecchhhhhhhccCcHHHHHHHH
Confidence 999999999999999999999999888899999999999999999999 9999999999999999999986655555544
Q ss_pred H
Q 031271 159 K 159 (162)
Q Consensus 159 ~ 159 (162)
.
T Consensus 100 ~ 100 (227)
T KOG0911|consen 100 K 100 (227)
T ss_pred H
Confidence 3
No 143
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.75 E-value=1.8e-07 Score=63.40 Aligned_cols=96 Identities=20% Similarity=0.247 Sum_probs=69.6
Q ss_pred eEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHHH
Q 031271 23 MELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAA 102 (162)
Q Consensus 23 ~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~ 102 (162)
..+++.++|+++++.+ ..+++ +|+=+++.|+-+.+....|++...
T Consensus 2 ~~L~t~eql~~i~~~S--~~~~~---------------------------------~iFKHSt~C~IS~~a~~~~e~~~~ 46 (105)
T PF11009_consen 2 KPLTTEEQLEEILEES--KEKPV---------------------------------LIFKHSTRCPISAMALREFEKFWE 46 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEE---------------------------------EEEEE-TT-HHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHhc--ccCcE---------------------------------EEEEeCCCChhhHHHHHHHHHHhh
Confidence 3678899999999874 36677 888899999999999999999999
Q ss_pred hcCC-cEEEEEECCCcH----HHHHhcCCCCCccEEEEEcCCeEEEEEcCC--CHHHH
Q 031271 103 MYTD-VQFIKIDVDWLP----EAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--KKDEL 153 (162)
Q Consensus 103 ~~~~-v~f~~vd~d~~~----~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--~~~~l 153 (162)
..++ +.++.+|+-+.. .++.+|||...-|.+++++||+.+...... +.+.|
T Consensus 47 ~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 47 ESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp HHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred cCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEEEECccccCCHHhc
Confidence 8887 999999987653 678999997899999999999999866544 66655
No 144
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.75 E-value=1.4e-07 Score=72.14 Aligned_cols=103 Identities=13% Similarity=0.083 Sum_probs=76.2
Q ss_pred cccceeEEecCCCeeeee---CceE-EEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc-------------
Q 031271 57 CINEMVLNINDGGNVVFW---VLKV-VIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL------------- 117 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~---~k~v-vv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~------------- 117 (162)
..|+|.+.+.+|.....+ ++.+ |+.|+++||+.|....+.|.++.++|. ++.++.|++|..
T Consensus 7 ~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~ 86 (215)
T PRK13599 7 KFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDN 86 (215)
T ss_pred CCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHh
Confidence 457888888888866532 3554 678999999999999999999999884 588888877632
Q ss_pred --------------HHHHHhcCCCC-------CccEEEEE-cCCeEEEEEc-----CCCHHHHHHHHHHH
Q 031271 118 --------------PEAAKAFDLID-------VLPTFVLV-KRGKEIDRVV-----GAKKDELQMKTEKR 160 (162)
Q Consensus 118 --------------~~l~~~~~i~~-------~~Ptiv~~-~~Gk~i~~~~-----g~~~~~l~~~l~~~ 160 (162)
..+++.||+ . .+|+++++ ++|++...+. |.+.+++.+.|+.+
T Consensus 87 ~~~~i~fPil~D~~~~va~~yg~-~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 87 TNIAIPFPVIADDLGKVSNQLGM-IHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCCceeEEECCCchHHHHcCC-CccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 246677776 3 57877777 7898877653 33577887777653
No 145
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.73 E-value=2.5e-07 Score=64.70 Aligned_cols=101 Identities=21% Similarity=0.321 Sum_probs=79.1
Q ss_pred eeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHH
Q 031271 22 VMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFA 101 (162)
Q Consensus 22 v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~ 101 (162)
+..+++..+.++++.. +.++++ +|.|..+|-+.|.++...|.+++
T Consensus 2 L~~L~s~~~VDqAI~~--e~drvv---------------------------------ViRFG~d~d~~Cm~mDeiL~~~a 46 (133)
T PF02966_consen 2 LPHLHSGWHVDQAILS--EEDRVV---------------------------------VIRFGRDWDPVCMQMDEILYKIA 46 (133)
T ss_dssp SEEE-SHHHHHHHHHH---SSSEE---------------------------------EEEEE-TTSHHHHHHHHHHHHHH
T ss_pred CcccCccchHHHHHhc--cCceEE---------------------------------EEEeCCCCCccHHHHHHHHHHHH
Confidence 4577888899999974 678988 99999999999999999999999
Q ss_pred HhcCC-cEEEEEECCCcHHHHHhcCCCCCccE-EEEEcCCeEEEEEcCC-----------CHHHHHHHHHH
Q 031271 102 AMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPT-FVLVKRGKEIDRVVGA-----------KKDELQMKTEK 159 (162)
Q Consensus 102 ~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Pt-iv~~~~Gk~i~~~~g~-----------~~~~l~~~l~~ 159 (162)
++.++ ..++.||+++-|++.+.|.+ . .|. +++|-+++.+.--.|. +..+++..++.
T Consensus 47 ~~v~~~a~IY~vDi~~Vpdfn~~yel-~-dP~tvmFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 47 EKVKNFAVIYLVDIDEVPDFNQMYEL-Y-DPCTVMFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp HHHTTTEEEEEEETTTTHCCHHHTTS---SSEEEEEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred HHhhcceEEEEEEcccchhhhccccc-C-CCeEEEEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence 99988 88999999999999999999 6 885 5555577766543332 35666666653
No 146
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.73 E-value=1.3e-07 Score=58.86 Aligned_cols=68 Identities=26% Similarity=0.477 Sum_probs=51.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhc----CCCCCccEEEEEcCCeEEEEEcCCCHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF----DLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 154 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~----~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~ 154 (162)
++.|+++||++|..+...|.+ .++.+..++++..+...+.+ +. ..+|++++ +|+ .+.|.++..|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-----~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~--~~~---~i~g~~~~~l~ 70 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-----RGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVI--GDE---HLSGFRPDKLR 70 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-----CCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEE--CCE---EEecCCHHHHH
Confidence 577999999999999888876 36777788888766544443 68 89999876 553 55678888887
Q ss_pred HHH
Q 031271 155 MKT 157 (162)
Q Consensus 155 ~~l 157 (162)
++|
T Consensus 71 ~~~ 73 (73)
T cd02976 71 ALL 73 (73)
T ss_pred hhC
Confidence 764
No 147
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.73 E-value=3.2e-07 Score=68.65 Aligned_cols=83 Identities=18% Similarity=0.117 Sum_probs=63.8
Q ss_pred ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-------------------------cHHHHHhcCCC
Q 031271 76 LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-------------------------LPEAAKAFDLI 127 (162)
Q Consensus 76 k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-------------------------~~~l~~~~~i~ 127 (162)
|+|+|+|| +.||+.|....+.|.+..+++. ++.++.|+.|. ...+++.||+
T Consensus 32 k~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv- 110 (187)
T PRK10382 32 RWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN- 110 (187)
T ss_pred CeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC-
Confidence 77899999 9999999999999999998884 47888887753 2357788887
Q ss_pred C----Cc--cEEEEE-cCCeEEEEEcC-----CCHHHHHHHHHH
Q 031271 128 D----VL--PTFVLV-KRGKEIDRVVG-----AKKDELQMKTEK 159 (162)
Q Consensus 128 ~----~~--Ptiv~~-~~Gk~i~~~~g-----~~~~~l~~~l~~ 159 (162)
. ++ |+.+++ ++|++...+.. .+.+++.+.|+.
T Consensus 111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 111 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred CcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 3 45 876666 79998776532 367777777764
No 148
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.73 E-value=2.9e-07 Score=70.32 Aligned_cols=105 Identities=14% Similarity=0.054 Sum_probs=75.8
Q ss_pred eccccceeEEecCCCeeee---eCceEEE-EEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc-----------
Q 031271 55 IYCINEMVLNINDGGNVVF---WVLKVVI-YYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL----------- 117 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~---~~k~vvv-~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~----------- 117 (162)
....|+|.+.+.+|+.... .+|.++| +|+++||+.|....+.|.+..++|. ++.++.|++|..
T Consensus 10 G~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~ 89 (215)
T PRK13191 10 GEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIE 89 (215)
T ss_pred CCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHH
Confidence 3456889988888875442 2365555 8889999999999999999999884 588888887632
Q ss_pred ----------------HHHHHhcCCCC-------CccEEEEE-cCCeEEEEEc-----CCCHHHHHHHHHHH
Q 031271 118 ----------------PEAAKAFDLID-------VLPTFVLV-KRGKEIDRVV-----GAKKDELQMKTEKR 160 (162)
Q Consensus 118 ----------------~~l~~~~~i~~-------~~Ptiv~~-~~Gk~i~~~~-----g~~~~~l~~~l~~~ 160 (162)
..+++.||+ . ..|+.+++ ++|++...+. |.+.+++...|+.+
T Consensus 90 ~~~~~~i~fPllsD~~~~ia~~ygv-~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 90 KNLKVEVPFPIIADPMGNVAKRLGM-IHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HhcCCCCceEEEECCchHHHHHcCC-cccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 246667776 3 36766666 7898877653 33678887777653
No 149
>PRK15000 peroxidase; Provisional
Probab=98.73 E-value=2.5e-07 Score=69.92 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=73.6
Q ss_pred cccceeEEec--CCCe---eee----eCceEEEEEecC-CChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc-------
Q 031271 57 CINEMVLNIN--DGGN---VVF----WVLKVVIYYTAA-WCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL------- 117 (162)
Q Consensus 57 ~~~~~~~~~~--~~~~---~~~----~~k~vvv~F~a~-wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~------- 117 (162)
..|+|.+... +|+. +.. .+|.++|+||+. ||+.|....+.|.+..++|. ++.++.|.+|..
T Consensus 7 ~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~ 86 (200)
T PRK15000 7 QAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWR 86 (200)
T ss_pred cCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
Confidence 4577777764 3342 222 367899999994 99999999999999998885 488888877621
Q ss_pred ---------------------HHHHHhcCCCC------CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHH
Q 031271 118 ---------------------PEAAKAFDLID------VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEK 159 (162)
Q Consensus 118 ---------------------~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~ 159 (162)
..+++.||+ . .+|+.+++ ++|++.....+. +.+++.+.|+.
T Consensus 87 ~~~~~~~g~~~i~fpllsD~~~~ia~~ygv-~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 87 NTPVDKGGIGPVKYAMVADVKREIQKAYGI-EHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred hhHHHhCCccccCceEEECCCcHHHHHcCC-ccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 246667787 6 68876666 699988876552 56777777764
No 150
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.71 E-value=7.2e-08 Score=62.12 Aligned_cols=59 Identities=15% Similarity=0.296 Sum_probs=46.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcH-----HHHHhcCCCCCccEEEEEcCCeEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLP-----EAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~-----~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
++.|+++||++|..+.+.|+++. .+ .+.++.++.+.+. .+.+.+++ ..+|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEE--CCEEE
Confidence 36799999999999999999976 33 3788888877554 36677899 99999854 77654
No 151
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.66 E-value=6.9e-07 Score=69.79 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=65.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc-----------HHHHHhcCCCCCccEEEEE-cC-CeEEEEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-----------PEAAKAFDLIDVLPTFVLV-KR-GKEIDRV 145 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~-----------~~l~~~~~i~~~~Ptiv~~-~~-Gk~i~~~ 145 (162)
+++||.+.|++|.++.|.+..+++.| ++.++.|++|.. ...++++|+ ..+|+++++ ++ ++...-.
T Consensus 154 L~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v-~~~Pal~Lv~~~t~~~~pv~ 231 (256)
T TIGR02739 154 LFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGV-KYFPALYLVNPKSQKMSPLA 231 (256)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCC-ccCceEEEEECCCCcEEEEe
Confidence 89999999999999999999999999 688888888744 458899999 999987776 55 5555555
Q ss_pred cCC-CHHHHHHHHHHH
Q 031271 146 VGA-KKDELQMKTEKR 160 (162)
Q Consensus 146 ~g~-~~~~l~~~l~~~ 160 (162)
.|. +.++|.+.|-..
T Consensus 232 ~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 232 YGFISQDELKERILNV 247 (256)
T ss_pred eccCCHHHHHHHHHHH
Confidence 677 888888776543
No 152
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.64 E-value=5.1e-07 Score=68.32 Aligned_cols=101 Identities=15% Similarity=0.084 Sum_probs=70.6
Q ss_pred ccceeEEecCCCeeeee---C-ceE-EEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC--------------
Q 031271 58 INEMVLNINDGGNVVFW---V-LKV-VIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-------------- 116 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~~~---~-k~v-vv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-------------- 116 (162)
.|+|.+.+.+|. +..+ . +.+ +++||++||+.|....+.|.++.++|. ++.++.|.+|.
T Consensus 5 aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~ 83 (203)
T cd03016 5 APNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEY 83 (203)
T ss_pred CCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHh
Confidence 467777777764 3222 2 434 558899999999999999999998885 48888887763
Q ss_pred -------------cHHHHHhcCCCC----Ccc----EEEEE-cCCeEEEEEcC-----CCHHHHHHHHHHH
Q 031271 117 -------------LPEAAKAFDLID----VLP----TFVLV-KRGKEIDRVVG-----AKKDELQMKTEKR 160 (162)
Q Consensus 117 -------------~~~l~~~~~i~~----~~P----tiv~~-~~Gk~i~~~~g-----~~~~~l~~~l~~~ 160 (162)
...+++.||+ . ..| +.+++ ++|++...+.+ .+.+++.+.|+.+
T Consensus 84 ~~~~~~fpil~D~~~~ia~~yg~-~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 84 TGVEIPFPIIADPDREVAKLLGM-IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cCCCCceeEEECchHHHHHHcCC-ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 2356778887 4 233 44555 79988877653 3677888877654
No 153
>PRK13189 peroxiredoxin; Provisional
Probab=98.63 E-value=5.7e-07 Score=69.04 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=73.4
Q ss_pred ccccceeEEecCCCeeee---eCceE-EEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-------------
Q 031271 56 YCINEMVLNINDGGNVVF---WVLKV-VIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW------------- 116 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~---~~k~v-vv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~------------- 116 (162)
...|+|.+.+.+|..... ..|.+ |++||++||+.|....+.|.++.++|. ++.++.|.+|.
T Consensus 13 ~~aPdF~~~~~~g~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~ 92 (222)
T PRK13189 13 DKFPEFEVKTTHGPIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKE 92 (222)
T ss_pred CcCCCcEeEcCCCCEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHH
Confidence 345778888777764432 23544 557789999999999999999988884 57888877752
Q ss_pred --------------cHHHHHhcCCCC-------CccEEEEE-cCCeEEEEEc-----CCCHHHHHHHHHHH
Q 031271 117 --------------LPEAAKAFDLID-------VLPTFVLV-KRGKEIDRVV-----GAKKDELQMKTEKR 160 (162)
Q Consensus 117 --------------~~~l~~~~~i~~-------~~Ptiv~~-~~Gk~i~~~~-----g~~~~~l~~~l~~~ 160 (162)
...+++.||+ . .+|+.+++ ++|++..... |.+.+++...|+.+
T Consensus 93 ~~g~~i~fPllsD~~~~ia~~ygv-~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 93 KLGVEIEFPIIADDRGEIAKKLGM-ISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hcCcCcceeEEEcCccHHHHHhCC-CccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 2246777886 4 46766666 7898876654 44677887777653
No 154
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=1.4e-07 Score=64.71 Aligned_cols=60 Identities=22% Similarity=0.465 Sum_probs=47.2
Q ss_pred EEEEecC--------CChhhhhhhHHHHHHHHhcCC-cEEEEEECCCc-------HHHHHhcCCCCCccEEEEEcC
Q 031271 79 VIYYTAA--------WCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWL-------PEAAKAFDLIDVLPTFVLVKR 138 (162)
Q Consensus 79 vv~F~a~--------wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~-------~~l~~~~~i~~~~Ptiv~~~~ 138 (162)
+++|+++ |||.|.+..|.+.+..+..+. +.|+.|++... ..+....++..++||++-+++
T Consensus 29 fvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 29 FVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred EEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcC
Confidence 8889865 999999999999998887765 99999998643 244444443389999998874
No 155
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.61 E-value=3.9e-07 Score=59.67 Aligned_cols=75 Identities=16% Similarity=0.302 Sum_probs=56.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc----HHHHHhcC--CCCCccEEEEEcCCeEEEEEcCCCHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL----PEAAKAFD--LIDVLPTFVLVKRGKEIDRVVGAKKDE 152 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~----~~l~~~~~--i~~~~Ptiv~~~~Gk~i~~~~g~~~~~ 152 (162)
++.|+.+||++|.++...|+++..+++++.+..+|++.. .++.+.++ . ..+|++++ +|+.+ .| .++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~-~tVP~ifi--~g~~i---gG--~~d 73 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPV-ETVPQIFV--DEKHV---GG--CTD 73 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCC-CCcCeEEE--CCEEe---cC--HHH
Confidence 577999999999999999999887777788888888753 35666666 4 68999854 77654 23 466
Q ss_pred HHHHHHHHh
Q 031271 153 LQMKTEKRR 161 (162)
Q Consensus 153 l~~~l~~~~ 161 (162)
|+++++++.
T Consensus 74 l~~~~~~~~ 82 (86)
T TIGR02183 74 FEQLVKENF 82 (86)
T ss_pred HHHHHHhcc
Confidence 777776654
No 156
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.57 E-value=1.3e-06 Score=68.46 Aligned_cols=106 Identities=16% Similarity=0.046 Sum_probs=76.3
Q ss_pred eeeccccceeEEe-cCCC--eeee----eCceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC------
Q 031271 53 CLIYCINEMVLNI-NDGG--NVVF----WVLKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW------ 116 (162)
Q Consensus 53 ~~~~~~~~~~~~~-~~~~--~~~~----~~k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~------ 116 (162)
......|+|.+.+ .+|+ .+.. .++++||+|| ++||+.|....+.|.+..++|. ++.++.|.+|.
T Consensus 69 ~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~a 148 (261)
T PTZ00137 69 LVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKA 148 (261)
T ss_pred cCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
Confidence 4455678898876 4554 3332 2367888888 8999999999999999988884 47788777753
Q ss_pred ----------------------cHHHHHhcCCCC-----CccEEEEE-cCCeEEEEEc-----CCCHHHHHHHHHH
Q 031271 117 ----------------------LPEAAKAFDLID-----VLPTFVLV-KRGKEIDRVV-----GAKKDELQMKTEK 159 (162)
Q Consensus 117 ----------------------~~~l~~~~~i~~-----~~Ptiv~~-~~Gk~i~~~~-----g~~~~~l~~~l~~ 159 (162)
+..+++.||+ . ..|+.+++ ++|++..... |.+.+++...|+.
T Consensus 149 w~~~~~~~~g~~~l~fPlLsD~~~~iakayGv-~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 149 WKELDVRQGGVSPLKFPLFSDISREVSKSFGL-LRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred HHhhhhhhccccCcceEEEEcCChHHHHHcCC-CCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 2357778887 5 47877777 6998887663 3367777777764
No 157
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.57 E-value=1.9e-06 Score=67.07 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=64.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-----------cHHHHHhcCCCCCccEEEEE-cC-CeEEEEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-----------LPEAAKAFDLIDVLPTFVLV-KR-GKEIDRV 145 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-----------~~~l~~~~~i~~~~Ptiv~~-~~-Gk~i~~~ 145 (162)
+++||.+.|++|.++.|.+..+++.| ++.++.|++|. +...+.++|+ ..+|+++++ ++ ++...-.
T Consensus 147 L~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v-~~~PAl~Lv~~~t~~~~pv~ 224 (248)
T PRK13703 147 LMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGV-KYFPALMLVDPKSGSVRPLS 224 (248)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCC-cccceEEEEECCCCcEEEEe
Confidence 89999999999999999999999998 77777777763 2346789999 999998777 44 4665556
Q ss_pred cCC-CHHHHHHHHHHH
Q 031271 146 VGA-KKDELQMKTEKR 160 (162)
Q Consensus 146 ~g~-~~~~l~~~l~~~ 160 (162)
.|. +.++|.+.|-..
T Consensus 225 ~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 225 YGFITQDDLAKRFLNV 240 (248)
T ss_pred eccCCHHHHHHHHHHH
Confidence 687 898888776543
No 158
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.50 E-value=1.9e-06 Score=64.90 Aligned_cols=102 Identities=10% Similarity=0.077 Sum_probs=70.9
Q ss_pred cccceeEEe----cCCCeeeee---CceEEEEEec-CCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc---------
Q 031271 57 CINEMVLNI----NDGGNVVFW---VLKVVIYYTA-AWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL--------- 117 (162)
Q Consensus 57 ~~~~~~~~~----~~~~~~~~~---~k~vvv~F~a-~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~--------- 117 (162)
..|+|.+.. .++..+..+ +|.++|+||. .||+.|....+.|.++.++|. ++.++.|+.|..
T Consensus 11 ~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~ 90 (199)
T PTZ00253 11 PAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQ 90 (199)
T ss_pred cCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhC
Confidence 356676543 344555544 3788999995 789999998899999988886 588888877621
Q ss_pred -------------------HHHHHhcCCCC------CccEEEEE-cCCeEEEEEcC-----CCHHHHHHHHHH
Q 031271 118 -------------------PEAAKAFDLID------VLPTFVLV-KRGKEIDRVVG-----AKKDELQMKTEK 159 (162)
Q Consensus 118 -------------------~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~~g-----~~~~~l~~~l~~ 159 (162)
.++++.||+ . .+|+.+++ ++|++.....+ .+.+++++.|..
T Consensus 91 ~~~~~~~~~~~fpll~D~~~~ia~~ygv-~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 91 ERKKGGLGTMAIPMLADKTKSIARSYGV-LEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred hHhhCCccccccceEECcHhHHHHHcCC-cccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 256778887 5 35776666 78888776654 255666666654
No 159
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.50 E-value=8.7e-07 Score=55.91 Aligned_cols=67 Identities=24% Similarity=0.427 Sum_probs=52.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhc---CCCCCccEEEEEcCCeEEEEEcCCCHHHHHHH
Q 031271 80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF---DLIDVLPTFVLVKRGKEIDRVVGAKKDELQMK 156 (162)
Q Consensus 80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~---~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~ 156 (162)
..|+.++|++|++....|++ .++.|-.+|++++++....+ |. ..+|++++ +|+ ..+.|++++.|.++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~--~g~--~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-----HGIAFEEINIDEQPEAIDYVKAQGF-RQVPVIVA--DGD--LSWSGFRPDKLKAL 71 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCC-cccCEEEE--CCC--cEEeccCHHHHHhc
Confidence 45889999999999999976 37888889999887666555 87 89999765 453 24678899988764
No 160
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.50 E-value=1.1e-06 Score=67.87 Aligned_cols=78 Identities=18% Similarity=0.309 Sum_probs=59.5
Q ss_pred ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEE--EC---------------------------------------
Q 031271 76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKI--DV--------------------------------------- 114 (162)
Q Consensus 76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~v--d~--------------------------------------- 114 (162)
+.+++.|+-+.||+|+++.+.+.++.+. ++.+..+ ..
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~ 185 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCD 185 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccccc
Confidence 5668999999999999999999887542 3333222 21
Q ss_pred ---CCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHH
Q 031271 115 ---DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKR 160 (162)
Q Consensus 115 ---d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~ 160 (162)
+++.++++++|+ .++|+++ +.||+.+ .|. ++++|+++|++.
T Consensus 186 ~~v~~~~~la~~lgi-~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 186 VDIADHYALGVQFGV-QGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred chHHHhHHHHHHcCC-ccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 123468899999 9999998 6899766 688 899999999865
No 161
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.47 E-value=3.7e-06 Score=54.50 Aligned_cols=71 Identities=24% Similarity=0.354 Sum_probs=56.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHH---HhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA---KAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQM 155 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~---~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~ 155 (162)
+..|+.+||++|.++...|++ .++.|-.+|+++.++.+ ...|. ..+|++++ ++. .+.|++++.|.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i--~~~---~~~Gf~~~~l~~ 71 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIA--GDL---SWSGFRPDMINR 71 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEE--CCE---EEecCCHHHHHH
Confidence 567899999999999988865 37899999999877643 34577 89999865 553 456999999999
Q ss_pred HHHHH
Q 031271 156 KTEKR 160 (162)
Q Consensus 156 ~l~~~ 160 (162)
++..+
T Consensus 72 ~~~~~ 76 (81)
T PRK10329 72 LHPAP 76 (81)
T ss_pred HHHhh
Confidence 88765
No 162
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.46 E-value=1.7e-06 Score=74.56 Aligned_cols=77 Identities=17% Similarity=0.297 Sum_probs=66.9
Q ss_pred ceE-EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271 76 LKV-VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL 153 (162)
Q Consensus 76 k~v-vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l 153 (162)
+++ +-.|.+++|++|..+...+++++.+.|++..-.+|....++++++|+| .++|++++ ||+.+ +.|. +.+++
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v-~~vP~~~i--~~~~~--~~G~~~~~~~ 550 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGI-MSVPAIVV--DDQQV--YFGKKTIEEM 550 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCc-eecCEEEE--CCEEE--EeeCCCHHHH
Confidence 444 556789999999999999999999999999999999999999999999 99999987 77755 3465 88888
Q ss_pred HHHH
Q 031271 154 QMKT 157 (162)
Q Consensus 154 ~~~l 157 (162)
.++|
T Consensus 551 ~~~~ 554 (555)
T TIGR03143 551 LELI 554 (555)
T ss_pred HHhh
Confidence 8876
No 163
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=6.5e-06 Score=59.76 Aligned_cols=106 Identities=21% Similarity=0.145 Sum_probs=80.8
Q ss_pred eccccceeEEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECC-------------
Q 031271 55 IYCINEMVLNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD------------- 115 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d------------- 115 (162)
....|+|++.+.+|+.+..++ ++|||+|| ..+++-|-...-.|.+...++. ++.++.|..|
T Consensus 7 G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~ 86 (157)
T COG1225 7 GDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHG 86 (157)
T ss_pred CCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhC
Confidence 345788999999999988777 88999999 6799999988888877777775 4888888875
Q ss_pred --------CcHHHHHhcCCCCC------------cc-EEEEEcCCeEEEEEcCC----CHHHHHHHHHHHh
Q 031271 116 --------WLPEAAKAFDLIDV------------LP-TFVLVKRGKEIDRVVGA----KKDELQMKTEKRR 161 (162)
Q Consensus 116 --------~~~~l~~~~~i~~~------------~P-tiv~~~~Gk~i~~~~g~----~~~~l~~~l~~~~ 161 (162)
...++++.||+ .. .+ |+++-++|++...+... ..+++++.|+++.
T Consensus 87 L~f~LLSD~~~~v~~~ygv-~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l~ 156 (157)
T COG1225 87 LTFPLLSDEDGEVAEAYGV-WGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKLA 156 (157)
T ss_pred CCceeeECCcHHHHHHhCc-ccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHhc
Confidence 34568888887 33 23 45555889988877444 3677888877654
No 164
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.42 E-value=1.9e-06 Score=52.27 Aligned_cols=56 Identities=25% Similarity=0.436 Sum_probs=43.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCCCccEEEEEcCCeEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
++.|+.+||++|+++...|++. ++.+-.+|++..++ +.+..|. ..+|++++ ||+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGV-RTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCC-CccCEEEE--CCEEC
Confidence 4679999999999999888553 68888888887754 3344599 99999876 77654
No 165
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.39 E-value=1.3e-07 Score=72.02 Aligned_cols=78 Identities=33% Similarity=0.548 Sum_probs=67.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM 155 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~ 155 (162)
++.|+++||+.|....|.|+.++.--.+ +.+.+||++.++-|.-+|=+ ...|||.=.++|.. .|+.|. +...++.
T Consensus 43 mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~v-taLptIYHvkDGeF-rrysgaRdk~dfis 120 (248)
T KOG0913|consen 43 MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLV-TALPTIYHVKDGEF-RRYSGARDKNDFIS 120 (248)
T ss_pred HHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEE-EecceEEEeecccc-ccccCcccchhHHH
Confidence 6889999999999999999998874434 99999999999999999999 99999987788865 456676 8888888
Q ss_pred HHH
Q 031271 156 KTE 158 (162)
Q Consensus 156 ~l~ 158 (162)
+++
T Consensus 121 f~~ 123 (248)
T KOG0913|consen 121 FEE 123 (248)
T ss_pred HHH
Confidence 876
No 166
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.31 E-value=6e-06 Score=58.56 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=30.3
Q ss_pred ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEE
Q 031271 76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKI 112 (162)
Q Consensus 76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~v 112 (162)
+++|+.|+.++||+|+.+.|.+.++...++++.+...
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~ 42 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFK 42 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEE
Confidence 4458999999999999999999998887876555443
No 167
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.27 E-value=9.5e-06 Score=69.40 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=66.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT 157 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l 157 (162)
+..|.+++|++|......+++++...|++.+-.+|....++++.+|++ .++|++++ ||+.+ +.|. +.++|.+.+
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v-~~VP~~~i--~~~~~--~~g~~~~~~~~~~~ 194 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNI-MAVPTVFL--NGEEF--GQGRMTLEEILAKL 194 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCC-cccCEEEE--CCcEE--EecCCCHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999 99999976 66544 3465 777777776
Q ss_pred HH
Q 031271 158 EK 159 (162)
Q Consensus 158 ~~ 159 (162)
.+
T Consensus 195 ~~ 196 (517)
T PRK15317 195 DT 196 (517)
T ss_pred hc
Confidence 54
No 168
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.26 E-value=5.1e-06 Score=62.38 Aligned_cols=74 Identities=20% Similarity=0.317 Sum_probs=53.2
Q ss_pred ceEEEEEecCCChhhhhhhHHHHHHHHhcCCc--EEEEEEC---------------------------------------
Q 031271 76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDV--QFIKIDV--------------------------------------- 114 (162)
Q Consensus 76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v--~f~~vd~--------------------------------------- 114 (162)
+++++.|+.+.|++|+++.+.+.+ ...++ .++.+.+
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~ 154 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASC 154 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcccc
Confidence 566999999999999999998876 12232 2222221
Q ss_pred ----CCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271 115 ----DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT 157 (162)
Q Consensus 115 ----d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l 157 (162)
+++..+++++|+ .++|+++ +.+|+.+ .|. ++++|.++|
T Consensus 155 ~~~i~~~~~l~~~~gi-~gtPtii-~~~G~~~---~G~~~~~~l~~~L 197 (197)
T cd03020 155 DNPVAANLALGRQLGV-NGTPTIV-LADGRVV---PGAPPAAQLEALL 197 (197)
T ss_pred CchHHHHHHHHHHcCC-CcccEEE-ECCCeEe---cCCCCHHHHHhhC
Confidence 123468889999 9999997 7888764 577 778887764
No 169
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.23 E-value=6.4e-06 Score=52.74 Aligned_cols=58 Identities=17% Similarity=0.314 Sum_probs=44.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH-----HHHHhcCCCCCccEEEEEcCCeEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-----EAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~-----~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
++.|+++|||+|..+.+.|+++.. .+.++.++.+... .+.+.+|. ..+|++ |.+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeE--EECCEEE
Confidence 577999999999999999998755 4677778777552 35566788 999997 4477654
No 170
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.21 E-value=6e-06 Score=55.53 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=40.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH-------HHHhcCCCCCccEEEEEcCCeEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE-------AAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~-------l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
++.|..+|||+|.++...|.+. ++.|..+|+|..++ +.+..|. ..+|.++ -+|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vf--i~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVF--VGGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEE--ECCEEE
Confidence 5679999999999999888775 45555666665432 3444577 8999974 477655
No 171
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.21 E-value=9e-06 Score=52.23 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=43.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc---HHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL---PEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~---~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
|+.|+.+||++|.+....|++. ++.|..+|++.. .++....|. ..+|.+++ +|+.+
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i--~g~~i 68 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFI--GGKLI 68 (79)
T ss_pred EEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCC-CCcCeEEE--CCEEE
Confidence 6779999999999999998753 677777888765 345566788 99999864 77654
No 172
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.20 E-value=1.8e-05 Score=51.14 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=57.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcC--C--eEEEEEcCC-CHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR--G--KEIDRVVGA-KKDEL 153 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~--G--k~i~~~~g~-~~~~l 153 (162)
++.|+.+.|+-|..+...+.++.... .+.+-.||+++++++..+|+. .+|.+.+-.. . ... ..+. +.++|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~--~IPVl~~~~~~~~~~~~~--~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY--RIPVLHIDGIRQFKEQEE--LKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT--STSEEEETT-GGGCTSEE--EESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC--CCCEEEEcCcccccccce--eCCCCCHHHH
Confidence 68899999999999999999876654 399999999999999999997 8998765320 0 222 2344 99999
Q ss_pred HHHHH
Q 031271 154 QMKTE 158 (162)
Q Consensus 154 ~~~l~ 158 (162)
.++|+
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99885
No 173
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.14 E-value=1.7e-05 Score=48.78 Aligned_cols=57 Identities=19% Similarity=0.325 Sum_probs=43.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCCCccEEEEEcCCeEEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEID 143 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~~i~~~~Ptiv~~~~Gk~i~ 143 (162)
++.|+++||++|+.+.+.|.+. ++.+..+|++.+++ +.+..+. ..+|+++ .+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~--~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-----GIEFEEIDILEDGELREELKELSGW-PTVPQIF--INGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEE--ECCEEEe
Confidence 4678999999999999998876 37778888887654 3445577 7889774 4786664
No 174
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.14 E-value=1e-05 Score=61.15 Aligned_cols=106 Identities=24% Similarity=0.316 Sum_probs=85.0
Q ss_pred CCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHH
Q 031271 19 TPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVK 98 (162)
Q Consensus 19 ~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~ 98 (162)
.+.|.++.+..+|.+.+... .+..++ +|..|-+.-.-|-.+...+.
T Consensus 137 ~~~V~El~~gkqfld~idke-~ks~~i---------------------------------~VhIYEdgi~gcealn~~~~ 182 (273)
T KOG3171|consen 137 YGFVYELETGKQFLDTIDKE-LKSTTI---------------------------------VVHIYEDGIKGCEALNSSLT 182 (273)
T ss_pred cceEEEeccchhHHHHHhcc-cceEEE---------------------------------EEEEecCCCchHHHHhhhHH
Confidence 46788888888888888752 234555 89999999999999999999
Q ss_pred HHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--------CHHHHHHHHHHH
Q 031271 99 DFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--------KKDELQMKTEKR 160 (162)
Q Consensus 99 ~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--------~~~~l~~~l~~~ 160 (162)
=++.+||-+.|+++-.+.. ...++|.. ..+|++++|++|..|..++.. ....|.++|+++
T Consensus 183 cLAAeyP~vKFckikss~~-gas~~F~~-n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 183 CLAAEYPIVKFCKIKSSNT-GASDRFSL-NVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred HhhccCCceeEEEeeeccc-cchhhhcc-cCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 9999999999999876544 66889999 999999999999988655422 355666666653
No 175
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.13 E-value=2.5e-05 Score=61.01 Aligned_cols=81 Identities=17% Similarity=0.251 Sum_probs=57.3
Q ss_pred ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC-----C-----------------------------------
Q 031271 76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV-----D----------------------------------- 115 (162)
Q Consensus 76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~-----d----------------------------------- 115 (162)
+.+|+.|+-+.|++|+++.+.+.++.+. .++.+..+-. +
T Consensus 118 k~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~~~ 196 (251)
T PRK11657 118 PRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPPAS 196 (251)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcccc
Confidence 5668899999999999999988877654 2333332211 0
Q ss_pred ----------CcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHH
Q 031271 116 ----------WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTE 158 (162)
Q Consensus 116 ----------~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~ 158 (162)
++..+++++|+ .++|++++-.+...+..+.|+ .+++|.+.|.
T Consensus 197 ~~~~~~~~i~~n~~l~~~lGv-~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 197 IPAAVRKQLADNQKLMDDLGA-NATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred CCHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 11247788999 999999987532344566788 7899988875
No 176
>PHA03050 glutaredoxin; Provisional
Probab=98.11 E-value=1.3e-05 Score=54.78 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=43.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC-Cc----HHHHHhcCCCCCccEEEEEcCCeEEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-WL----PEAAKAFDLIDVLPTFVLVKRGKEID 143 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d-~~----~~l~~~~~i~~~~Ptiv~~~~Gk~i~ 143 (162)
++.|..+|||+|.++...|++..-.++.+..+.++-. .. .++.+..|. ..+|++++ +|+.+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI--~g~~iG 81 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFF--GKTSIG 81 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEE--CCEEEe
Confidence 5779999999999999999887544444444444421 12 346667788 99999855 787653
No 177
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.09 E-value=1.5e-05 Score=50.87 Aligned_cols=55 Identities=20% Similarity=0.356 Sum_probs=41.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHH----HhcCCCCCccEEEEEcCCeEE
Q 031271 80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA----KAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~----~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
..|+.+||++|.++...|++. ++.|-.+|++.+++.. +..|. ..+|++++ +|+.+
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i--~g~~i 60 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFI--GDVHV 60 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEE--CCEEE
Confidence 568899999999999999864 5677777887766543 44577 89999854 77654
No 178
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.07 E-value=5.9e-05 Score=47.32 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=47.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH---HHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE---AAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQM 155 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~---l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~ 155 (162)
++.|..+||++|.+....|++. ++.|..+|++.+.. +....|. ..+|.++ -+|+.+. | .++|.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~if--i~g~~ig---g--~~~l~~ 69 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGA-MTVPQVF--IDGELIG---G--SDDLEK 69 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCC-CCcCeEE--ECCEEEe---C--HHHHHH
Confidence 6779999999999998888753 67777778776543 3344688 8999974 4776552 3 455555
Q ss_pred HH
Q 031271 156 KT 157 (162)
Q Consensus 156 ~l 157 (162)
+|
T Consensus 70 ~l 71 (72)
T cd03029 70 YF 71 (72)
T ss_pred Hh
Confidence 44
No 179
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.06 E-value=3.2e-05 Score=48.71 Aligned_cols=57 Identities=19% Similarity=0.505 Sum_probs=44.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCCCccEEEEEcCCeEEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEID 143 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~~i~~~~Ptiv~~~~Gk~i~ 143 (162)
++.|+.+||++|+++...|++. ++.|..+|++..++ +.+..+. ..+|++++ ||+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i--~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGS-SVVPQIFF--NEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEE--CCEEEe
Confidence 5678899999999999988873 67788888887664 5556677 89999854 776553
No 180
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.05 E-value=3.4e-05 Score=48.53 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=42.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHH----HhcCCCC-CccEEEEEcCCeEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA----KAFDLID-VLPTFVLVKRGKEI 142 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~----~~~~i~~-~~Ptiv~~~~Gk~i 142 (162)
+..|+.+||++|.++...|++. ++.|-.+|++.+++.. +.++. . .+|+++ -+|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~-~~~vP~v~--i~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGG-RRTVPQIF--IGDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCC-CCccCEEE--ECCEEE
Confidence 5679999999999999888763 6788888888765543 34576 6 899875 477655
No 181
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.04 E-value=0.00026 Score=51.76 Aligned_cols=89 Identities=19% Similarity=0.302 Sum_probs=69.8
Q ss_pred eeeeeCce-EEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCC--CccEEEEEc--CCeEEE
Q 031271 70 NVVFWVLK-VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLID--VLPTFVLVK--RGKEID 143 (162)
Q Consensus 70 ~~~~~~k~-vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~--~~Ptiv~~~--~Gk~i~ 143 (162)
.+...+++ +++.|..........+...+.++++++++ +.|+.+|.+..+.+++.||+ . .+|+++++. +++...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i-~~~~~P~~vi~~~~~~~~~~ 167 (184)
T PF13848_consen 89 KLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGI-DEDDLPALVIFDSNKGKYYY 167 (184)
T ss_dssp HHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTT-TTSSSSEEEEEETTTSEEEE
T ss_pred HHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCC-CCccCCEEEEEECCCCcEEc
Confidence 33344444 57778777788888999999999999988 99999999999999999999 7 999999885 454332
Q ss_pred EEcCC-CHHHHHHHHHH
Q 031271 144 RVVGA-KKDELQMKTEK 159 (162)
Q Consensus 144 ~~~g~-~~~~l~~~l~~ 159 (162)
...+. +.+.|.+|++.
T Consensus 168 ~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 168 LPEGEITPESIEKFLND 184 (184)
T ss_dssp --SSCGCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHhcC
Confidence 23566 89999999864
No 182
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.03 E-value=0.00021 Score=57.66 Aligned_cols=116 Identities=15% Similarity=0.108 Sum_probs=73.6
Q ss_pred cCCCCCCCCcccCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecC
Q 031271 6 SSLENPHGFIHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAA 85 (162)
Q Consensus 6 ~~~~~~~~~~~~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~ 85 (162)
...++-....+-+.-+|..++. .+|.+.++. -..+ +|+||.+
T Consensus 20 ~aeegLefP~YDGkDRVi~Lne-KNfk~~lKk----yd~l---------------------------------~l~yh~p 61 (383)
T PF01216_consen 20 RAEEGLEFPEYDGKDRVIDLNE-KNFKRALKK----YDVL---------------------------------VLYYHEP 61 (383)
T ss_dssp ------SSSS-SSS--CEEE-T-TTHHHHHHH-----SEE---------------------------------EEEEE--
T ss_pred chhhccCCccCCCccceEEcch-hHHHHHHHh----hcEE---------------------------------EEEEecC
Confidence 3444555556777888888854 788888764 3455 7888877
Q ss_pred CChhhhhhhHHH------HHH-HHhc--CCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHH
Q 031271 86 WCGPCKFIEPYV------KDF-AAMY--TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMK 156 (162)
Q Consensus 86 wC~~C~~~~~~l------~~~-~~~~--~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~ 156 (162)
-- ..+..+..+ -++ ++-+ .++-|..||..+...+++++|+ ...+++.+|++|+.+....-.+++.|..|
T Consensus 62 ~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv-~E~~SiyVfkd~~~IEydG~~saDtLVeF 139 (383)
T PF01216_consen 62 VE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV-EEEGSIYVFKDGEVIEYDGERSADTLVEF 139 (383)
T ss_dssp ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT---STTEEEEEETTEEEEE-S--SHHHHHHH
T ss_pred Cc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc-cccCcEEEEECCcEEEecCccCHHHHHHH
Confidence 53 333322222 222 2322 4699999999999999999999 99999999999999998733499999999
Q ss_pred HHHHh
Q 031271 157 TEKRR 161 (162)
Q Consensus 157 l~~~~ 161 (162)
|-...
T Consensus 140 l~dl~ 144 (383)
T PF01216_consen 140 LLDLL 144 (383)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 97664
No 183
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.03 E-value=6.1e-05 Score=64.44 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=65.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT 157 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l 157 (162)
+..|.++.||+|......+++++...|++..-.+|....++++.+|++ .++|++++ ||+.+ +.|. +.+++.+.+
T Consensus 121 i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v-~~VP~~~i--~~~~~--~~g~~~~~~~~~~l 195 (515)
T TIGR03140 121 FETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGI-QGVPAVFL--NGEEF--HNGRMDLAELLEKL 195 (515)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCC-cccCEEEE--CCcEE--EecCCCHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999 99999976 66544 3465 777776666
Q ss_pred HH
Q 031271 158 EK 159 (162)
Q Consensus 158 ~~ 159 (162)
.+
T Consensus 196 ~~ 197 (515)
T TIGR03140 196 EE 197 (515)
T ss_pred hh
Confidence 54
No 184
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.99 E-value=7.7e-05 Score=53.53 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=59.4
Q ss_pred ceEEEEEecCCChhhhhhhHHHHHHHHhc--CC-cEEEEEECCC------------------------------------
Q 031271 76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMY--TD-VQFIKIDVDW------------------------------------ 116 (162)
Q Consensus 76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~--~~-v~f~~vd~d~------------------------------------ 116 (162)
+++|+.|+...|++|.++.+.+.++.+++ ++ +.|...++-.
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQENF 92 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCHST
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 55699999999999999999999998888 44 7777765510
Q ss_pred --------------------------------cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHH
Q 031271 117 --------------------------------LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEK 159 (162)
Q Consensus 117 --------------------------------~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~ 159 (162)
....++++|| .++||+++ ||+.+ .+. +.++|.++|++
T Consensus 93 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 93 ENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGI-TGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp SSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT--SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred chhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCC-ccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 0124567788 99999988 99885 455 99999999875
No 185
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.93 E-value=3.4e-05 Score=57.77 Aligned_cols=105 Identities=14% Similarity=0.254 Sum_probs=82.6
Q ss_pred ccCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhH
Q 031271 16 HAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEP 95 (162)
Q Consensus 16 ~~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~ 95 (162)
.++++.|.+|+. .+|.+.+..|.+ +-.| +|..|...-+.|.-+..
T Consensus 87 k~kfG~V~~ISg-~dyv~EVT~As~-gvwV---------------------------------vvhLy~~gvp~c~Ll~~ 131 (240)
T KOG3170|consen 87 KAKFGEVFPISG-PDYVKEVTKASE-GVWV---------------------------------VVHLYKQGVPLCALLSH 131 (240)
T ss_pred Hhcccceeeccc-hHHHHHHHhccC-ccEE---------------------------------EEEeeccccHHHHHHHH
Confidence 457888888855 677777776643 4555 89999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcC------C--CHHHHHHHHHH
Q 031271 96 YVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVG------A--KKDELQMKTEK 159 (162)
Q Consensus 96 ~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g------~--~~~~l~~~l~~ 159 (162)
.|+.++..||.+.|+++-.+.+.+ .|-- ...||+++|..|.+...+.| . +.+.+..++-+
T Consensus 132 ~l~~la~kfp~iKFVki~at~cIp---NYPe-~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 132 HLQSLACKFPQIKFVKIPATTCIP---NYPE-SNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred HHHHHhhcCCcceEEecccccccC---CCcc-cCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 999999999999999998776633 5666 89999999988876665543 3 57777776654
No 186
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.91 E-value=9e-05 Score=54.05 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=30.0
Q ss_pred CceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEE
Q 031271 75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFI 110 (162)
Q Consensus 75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~ 110 (162)
.+++|+.|+...||+|+.+.+.+.++.+++++ +.|.
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 35559999999999999999999999888875 4443
No 187
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.85 E-value=0.00013 Score=48.87 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=38.2
Q ss_pred CCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHH----HHhcCCCCCccEEEEEcCCeEE
Q 031271 85 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEA----AKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 85 ~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l----~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
+|||+|.++...|.+. ++.|..+|++.++++ .+..|. ..+|.+++ +|+.+
T Consensus 25 ~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi--~g~~i 78 (97)
T TIGR00365 25 PQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYV--KGEFV 78 (97)
T ss_pred CCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEE--CCEEE
Confidence 8999999999988774 567778888776643 445677 89998854 77655
No 188
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00017 Score=46.55 Aligned_cols=66 Identities=29% Similarity=0.402 Sum_probs=46.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH-----HHHHhc-CCCCCccEEEEEcCCeEEEEEcCC-CHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-----EAAKAF-DLIDVLPTFVLVKRGKEIDRVVGA-KKD 151 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~-----~l~~~~-~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~ 151 (162)
+..|..+|||+|++....|.+ .++.|..++++... +..++. |. ..+|++++ +|+.+ .|. +.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-----~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i--~~~~i---gg~~d~~ 71 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-----KGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFI--GGKHV---GGCDDLD 71 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-----cCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEE--CCEEE---eCcccHH
Confidence 577999999999999988885 36777777776544 344455 78 99999876 66533 343 666
Q ss_pred HHHH
Q 031271 152 ELQM 155 (162)
Q Consensus 152 ~l~~ 155 (162)
.+..
T Consensus 72 ~~~~ 75 (80)
T COG0695 72 ALEA 75 (80)
T ss_pred HHHh
Confidence 6644
No 189
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.77 E-value=0.00011 Score=50.10 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=53.6
Q ss_pred EEEEecCCC---hhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC
Q 031271 79 VIYYTAAWC---GPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA 148 (162)
Q Consensus 79 vv~F~a~wC---~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~ 148 (162)
++ |++..| +.|....=++.++.+.+++ .....+..+...++..+||+ ..+|+++++++|+.+..+.|.
T Consensus 30 vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv-~~~PaLvf~R~g~~lG~i~gi 101 (107)
T PF07449_consen 30 VL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGV-RRWPALVFFRDGRYLGAIEGI 101 (107)
T ss_dssp EE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT--TSSSEEEEEETTEEEEEEESS
T ss_pred EE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCC-ccCCeEEEEECCEEEEEecCe
Confidence 45 444444 5555555588999999988 66667777788899999999 999999999999999998887
No 190
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.75 E-value=0.00023 Score=46.80 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=37.4
Q ss_pred CCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCCCccEEEEEcCCeEE
Q 031271 85 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 85 ~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
+||++|.++...|.+. ++.|-.+|++.+++ +.+..|. ..+|+++ .+|+.+
T Consensus 21 ~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vf--i~g~~i 74 (90)
T cd03028 21 PRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLY--VNGELV 74 (90)
T ss_pred CCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEE--ECCEEE
Confidence 6999999999888875 46677777776654 3455677 8999974 478654
No 191
>PRK10638 glutaredoxin 3; Provisional
Probab=97.71 E-value=0.00026 Score=45.72 Aligned_cols=57 Identities=23% Similarity=0.314 Sum_probs=42.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCCCccEEEEEcCCeEEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEID 143 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~~i~~~~Ptiv~~~~Gk~i~ 143 (162)
+..|..+||++|+++...|++. ++.+..+|++..++ +.+..|. ..+|++++ +|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~--~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFI--DAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEE--CCEEEe
Confidence 5678899999999999888864 56677778876653 4455678 89998744 786653
No 192
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0004 Score=55.28 Aligned_cols=82 Identities=21% Similarity=0.375 Sum_probs=62.8
Q ss_pred EEEEecC----CChhhhhhhHHHHHHHHhcC----C-----cEEEEEECCCcHHHHHhcCCCCCccEEEEEc--CCeEE-
Q 031271 79 VIYYTAA----WCGPCKFIEPYVKDFAAMYT----D-----VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK--RGKEI- 142 (162)
Q Consensus 79 vv~F~a~----wC~~C~~~~~~l~~~~~~~~----~-----v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~--~Gk~i- 142 (162)
++.|.|. .|.-|+.....+.-++..+. + +-|..||.|+.|++.+++++ ..+|++++|+ .|...
T Consensus 64 IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~l-n~~P~l~~f~P~~~n~~~ 142 (331)
T KOG2603|consen 64 IVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLNL-NNVPHLVLFSPAKGNKKR 142 (331)
T ss_pred EEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhcc-cCCCeEEEeCCCcccccc
Confidence 7888865 89999999999988877542 1 67899999999999999999 9999999992 23222
Q ss_pred -----EEEcCCCHHHHHHHHHHHh
Q 031271 143 -----DRVVGAKKDELQMKTEKRR 161 (162)
Q Consensus 143 -----~~~~g~~~~~l~~~l~~~~ 161 (162)
..-.|...|++.+++++..
T Consensus 143 s~~~d~~~~g~~Ae~iaqfv~~~t 166 (331)
T KOG2603|consen 143 SDQMDQQDLGFEAEQIAQFVADRT 166 (331)
T ss_pred CccchhhhcchhHHHHHHHHHHhh
Confidence 1122445788888887653
No 193
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.66 E-value=0.00034 Score=52.95 Aligned_cols=38 Identities=13% Similarity=0.271 Sum_probs=30.4
Q ss_pred ceEEEEEecCCChhhhhhhHHH---HHHHHhcCC-cEEEEEE
Q 031271 76 LKVVIYYTAAWCGPCKFIEPYV---KDFAAMYTD-VQFIKID 113 (162)
Q Consensus 76 k~vvv~F~a~wC~~C~~~~~~l---~~~~~~~~~-v~f~~vd 113 (162)
++.|+.|+.-.||+|..+.+.+ +.+.+.+++ +.|+.+.
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 5558999999999999999876 788888874 6665543
No 194
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.63 E-value=0.00084 Score=44.15 Aligned_cols=73 Identities=18% Similarity=0.040 Sum_probs=53.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCC-eEEEEEcCC-CHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG-KEIDRVVGA-KKDELQM 155 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~G-k~i~~~~g~-~~~~l~~ 155 (162)
+|-|+.++|. .....+.+++..++ ++.|..+. +.+++..+++ ..|++++|+.. .....+.|. +.+.|.+
T Consensus 21 vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~--~~~~i~l~~~~~~~~~~y~g~~~~~~l~~ 92 (97)
T cd02981 21 VVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKV--KPGSVVLFKPFEEEPVEYDGEFTEESLVE 92 (97)
T ss_pred EEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCC--CCCceEEeCCcccCCccCCCCCCHHHHHH
Confidence 7888899887 45667888888886 48776655 4677888887 45899998653 333335565 7899999
Q ss_pred HHHH
Q 031271 156 KTEK 159 (162)
Q Consensus 156 ~l~~ 159 (162)
||..
T Consensus 93 fi~~ 96 (97)
T cd02981 93 FIKD 96 (97)
T ss_pred HHHh
Confidence 9875
No 195
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.59 E-value=0.00067 Score=49.11 Aligned_cols=91 Identities=23% Similarity=0.153 Sum_probs=59.5
Q ss_pred cccceeEEecC---CCeeeeeC----ceEEEEEe-cCCChhhhhh-hHHHHHHHHhcC--Cc-EEEEEECC---------
Q 031271 57 CINEMVLNIND---GGNVVFWV----LKVVIYYT-AAWCGPCKFI-EPYVKDFAAMYT--DV-QFIKIDVD--------- 115 (162)
Q Consensus 57 ~~~~~~~~~~~---~~~~~~~~----k~vvv~F~-a~wC~~C~~~-~~~l~~~~~~~~--~v-~f~~vd~d--------- 115 (162)
..|+|.+.+.+ |+.+..++ ++++|+|| +.||+.|... .+.|.+..+++. ++ .++.|..|
T Consensus 4 ~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~ 83 (155)
T cd03013 4 KLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWG 83 (155)
T ss_pred cCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHH
Confidence 35777777764 77665433 55666555 7899999998 888988888774 46 57777664
Q ss_pred --------------CcHHHHHhcCCCCC-----------ccEEEEEcCCeEEEEEcCC
Q 031271 116 --------------WLPEAAKAFDLIDV-----------LPTFVLVKRGKEIDRVVGA 148 (162)
Q Consensus 116 --------------~~~~l~~~~~i~~~-----------~Ptiv~~~~Gk~i~~~~g~ 148 (162)
...++++.||+ .. ...++++.+|++...+...
T Consensus 84 ~~~~~~~~f~lLsD~~~~~~~~ygv-~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~ 140 (155)
T cd03013 84 KALGAKDKIRFLADGNGEFTKALGL-TLDLSAAGGGIRSKRYALIVDDGKVKYLFVEE 140 (155)
T ss_pred HhhCCCCcEEEEECCCHHHHHHcCC-CccccccCCcceeeeEEEEECCCEEEEEEEec
Confidence 23467778886 31 1234445678777655433
No 196
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.58 E-value=0.0013 Score=50.78 Aligned_cols=100 Identities=19% Similarity=0.241 Sum_probs=69.8
Q ss_pred ccceeEEecCCCe------eeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECC---------------
Q 031271 58 INEMVLNINDGGN------VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD--------------- 115 (162)
Q Consensus 58 ~~~~~~~~~~~~~------~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d--------------- 115 (162)
-|+..+-..+|+. +.+.++|.||+|.+-.||+=+.-.+.+++++++|++ +.|+.|=+.
T Consensus 79 APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~ 158 (237)
T PF00837_consen 79 APNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPY 158 (237)
T ss_pred CCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCce
Confidence 3444444444443 466789999999999999999999999999999987 566655321
Q ss_pred ---C----------------------------cHHHHHhcCCCCCccE-EEEEcCCeEEEEEc-C---CCHHHHHHHHHH
Q 031271 116 ---W----------------------------LPEAAKAFDLIDVLPT-FVLVKRGKEIDRVV-G---AKKDELQMKTEK 159 (162)
Q Consensus 116 ---~----------------------------~~~l~~~~~i~~~~Pt-iv~~~~Gk~i~~~~-g---~~~~~l~~~l~~ 159 (162)
+ +......|| .+|. +.++++||++.+-. | ++++++++||++
T Consensus 159 ~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Yg---A~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~ 235 (237)
T PF00837_consen 159 EIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYG---ALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEK 235 (237)
T ss_pred eecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhC---CCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHh
Confidence 0 012344454 4774 66668999776432 2 379999999998
Q ss_pred H
Q 031271 160 R 160 (162)
Q Consensus 160 ~ 160 (162)
+
T Consensus 236 ~ 236 (237)
T PF00837_consen 236 Y 236 (237)
T ss_pred c
Confidence 5
No 197
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00021 Score=62.23 Aligned_cols=79 Identities=16% Similarity=0.297 Sum_probs=62.1
Q ss_pred HHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhH-HH--HHHHHhcC-Cc
Q 031271 32 RSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEP-YV--KDFAAMYT-DV 107 (162)
Q Consensus 32 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~-~l--~~~~~~~~-~v 107 (162)
++.++.|++.+|++ +|-...+||..|..|.. .+ +++++-+. ++
T Consensus 33 ~eAf~~A~~edkPI---------------------------------flSIGys~CHWChVM~~ESf~d~eiA~~lN~~F 79 (667)
T COG1331 33 EEAFAKAKEEDKPI---------------------------------LLSIGYSTCHWCHVMAHESFEDPEIAAILNENF 79 (667)
T ss_pred HHHHHHHHHhCCCE---------------------------------EEEeccccccchHHHhhhcCCCHHHHHHHHhCc
Confidence 56788888889999 99999999999998865 33 56666553 48
Q ss_pred EEEEEECCCcHHHHHhcC--------CCCCccEEEEE-cCCeEEEE
Q 031271 108 QFIKIDVDWLPEAAKAFD--------LIDVLPTFVLV-KRGKEIDR 144 (162)
Q Consensus 108 ~f~~vd~d~~~~l~~~~~--------i~~~~Ptiv~~-~~Gk~i~~ 144 (162)
.-++||-++.|++.+.|. - .++|-.||. ++|+++.-
T Consensus 80 V~IKVDREERPDvD~~Ym~~~q~~tG~-GGWPLtVfLTPd~kPFfa 124 (667)
T COG1331 80 VPVKVDREERPDVDSLYMNASQAITGQ-GGWPLTVFLTPDGKPFFA 124 (667)
T ss_pred eeeeEChhhccCHHHHHHHHHHHhccC-CCCceeEEECCCCceeee
Confidence 888999999988777774 6 899965554 99998863
No 198
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.54 E-value=0.00079 Score=58.22 Aligned_cols=81 Identities=15% Similarity=0.207 Sum_probs=64.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEE-cCCeEE-EEEcCC-CHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV-KRGKEI-DRVVGA-KKDELQM 155 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i-~~~~g~-~~~~l~~ 155 (162)
++.|+.+.|..|..+...+++++..-+.+.+...|...+.+++.+|++ ...|++.++ .+|+.. -++.|. .-.+|..
T Consensus 370 l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v-~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s 448 (555)
T TIGR03143 370 LLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKI-TKLPTVALLDDDGNYTGLKFHGVPSGHELNS 448 (555)
T ss_pred EEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCC-CcCCEEEEEeCCCcccceEEEecCccHhHHH
Confidence 778888899999999999999997656688888899899999999999 999999998 465432 456666 5666666
Q ss_pred HHHHH
Q 031271 156 KTEKR 160 (162)
Q Consensus 156 ~l~~~ 160 (162)
+|...
T Consensus 449 ~i~~i 453 (555)
T TIGR03143 449 FILAL 453 (555)
T ss_pred HHHHH
Confidence 66544
No 199
>PRK10824 glutaredoxin-4; Provisional
Probab=97.53 E-value=0.00044 Score=47.77 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=36.0
Q ss_pred CCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHH----HHhcCCCCCccEEEEEcCCeEEE
Q 031271 85 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEA----AKAFDLIDVLPTFVLVKRGKEID 143 (162)
Q Consensus 85 ~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l----~~~~~i~~~~Ptiv~~~~Gk~i~ 143 (162)
||||+|.++...|.++ ++.|..+|++.++++ .+.-|- ..+|.+++ +|+.+.
T Consensus 28 p~Cpyc~~ak~lL~~~-----~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI--~G~~IG 82 (115)
T PRK10824 28 PSCGFSAQAVQALSAC-----GERFAYVDILQNPDIRAELPKYANW-PTFPQLWV--DGELVG 82 (115)
T ss_pred CCCchHHHHHHHHHHc-----CCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEE--CCEEEc
Confidence 5999999999988876 345555677666543 334466 78887755 887773
No 200
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.37 E-value=0.0016 Score=45.90 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHhcCC--cEEEEEECCCcHHHHHhcCCCCC--ccEEEEEcCCe-EEEEEcCC-CHHHHHHHHHHHh
Q 031271 92 FIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDV--LPTFVLVKRGK-EIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 92 ~~~~~l~~~~~~~~~--v~f~~vd~d~~~~l~~~~~i~~~--~Ptiv~~~~Gk-~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
.....|.+++++|++ +.|+.+|.++...+.+.||+ .. +|+++++...+ ....+.|. +.+.|.+|+++++
T Consensus 41 ~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl-~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l 115 (130)
T cd02983 41 KYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNI-GGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELS 115 (130)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCC-CccCCCEEEEEecccCccccccCccCHHHHHHHHHHHH
Confidence 567788999999975 89999999999899999998 54 99999884332 22214455 8999999999875
No 201
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.28 E-value=0.0025 Score=43.66 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=54.8
Q ss_pred hhhhhhhHHHHHHHHhcC-C-cEEEEEECCCcHHHHHhcCCCCC----ccEEEEEc-CCeEEEEEcCC-CHHHHHHHHHH
Q 031271 88 GPCKFIEPYVKDFAAMYT-D-VQFIKIDVDWLPEAAKAFDLIDV----LPTFVLVK-RGKEIDRVVGA-KKDELQMKTEK 159 (162)
Q Consensus 88 ~~C~~~~~~l~~~~~~~~-~-v~f~~vd~d~~~~l~~~~~i~~~----~Ptiv~~~-~Gk~i~~~~g~-~~~~l~~~l~~ 159 (162)
..-....+.+.++++.|+ + +.|+.+|.++.....+.||+ .. +|.+++.. +++....-... +.+.|.+++++
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl-~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGL-DFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLED 109 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCC-CcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHH
Confidence 334567888999999999 5 99999999988778999999 64 99998884 44222111234 78999999987
Q ss_pred H
Q 031271 160 R 160 (162)
Q Consensus 160 ~ 160 (162)
+
T Consensus 110 f 110 (111)
T cd03073 110 F 110 (111)
T ss_pred h
Confidence 5
No 202
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.22 E-value=0.0032 Score=43.06 Aligned_cols=81 Identities=10% Similarity=0.096 Sum_probs=59.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHh---cCC-cEEEEEECCCcHHHHHhcCCCCC--ccEEEEEcC-C-eEEEEEcCC-C
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAM---YTD-VQFIKIDVDWLPEAAKAFDLIDV--LPTFVLVKR-G-KEIDRVVGA-K 149 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~---~~~-v~f~~vd~d~~~~l~~~~~i~~~--~Ptiv~~~~-G-k~i~~~~g~-~ 149 (162)
.+.|+.+ ..-....+.+.+++++ +++ +.|+.+|.+......+.||+ .. +|.+.+... + +......+. +
T Consensus 20 ~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl-~~~~~P~i~i~~~~~~~Ky~~~~~~~t 96 (111)
T cd03072 20 LILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGK-TPADLPVIAIDSFRHMYLFPDFEDVYV 96 (111)
T ss_pred EEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCC-CHhHCCEEEEEcchhcCcCCCCccccC
Confidence 4455522 2336678889999999 987 99999999988779999999 76 899988743 2 222113344 8
Q ss_pred HHHHHHHHHHHhC
Q 031271 150 KDELQMKTEKRRN 162 (162)
Q Consensus 150 ~~~l~~~l~~~~~ 162 (162)
++.|.++++++.+
T Consensus 97 ~~~i~~Fv~~~~~ 109 (111)
T cd03072 97 PGKLKQFVLDLHS 109 (111)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998753
No 203
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.20 E-value=0.0018 Score=41.74 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=41.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEE--CCCc------------------------------HHHHHhcC
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKID--VDWL------------------------------PEAAKAFD 125 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd--~d~~------------------------------~~l~~~~~ 125 (162)
+..|+.+.|++|..+.+.++++....++ +.+.... .... ...+..+|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 3679999999999999999998755544 4444443 2221 23567889
Q ss_pred CCCCccEEEEE
Q 031271 126 LIDVLPTFVLV 136 (162)
Q Consensus 126 i~~~~Ptiv~~ 136 (162)
+ .++|++++.
T Consensus 81 ~-~g~Pt~v~~ 90 (98)
T cd02972 81 V-TGTPTFVVN 90 (98)
T ss_pred C-CCCCEEEEC
Confidence 9 999999874
No 204
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.16 E-value=0.0016 Score=54.38 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=43.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHH---Hh---------cCCCCCccEEEEEcCCeEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA---KA---------FDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~---~~---------~~i~~~~Ptiv~~~~Gk~i 142 (162)
|+.|+.+|||+|.++...|.+. ++.|-.+|+++.+... ++ .|. ..+|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEE--CCEEE
Confidence 6779999999999999888874 7888889998776322 22 477 89999866 67644
No 205
>PTZ00062 glutaredoxin; Provisional
Probab=97.12 E-value=0.0041 Score=47.17 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=36.8
Q ss_pred CCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHH----HhcCCCCCccEEEEEcCCeEE
Q 031271 85 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA----KAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 85 ~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~----~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
|||++|+++...|.+. ++.|..+|+++.+++. +..|. ..+|.+.+ +|+.+
T Consensus 126 p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI--~G~~I 179 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNW-PTYPQLYV--NGELI 179 (204)
T ss_pred CCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEE--CCEEE
Confidence 7999999998888864 5777788888766543 33466 67787754 78766
No 206
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0034 Score=42.57 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=40.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH-H----HHHhcCCCCCccEEEEEcCCeEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-E----AAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~-~----l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
+|.|.-+||++|+++...|.++ -....++.+|.+.+. + +.+.-+. +.+|.+++ +|+.+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI--~Gk~i 78 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFI--GGKFI 78 (104)
T ss_pred EEEEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEE--CCEEE
Confidence 4669999999999988777771 123667777766443 3 3333456 78998765 88877
No 207
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=96.93 E-value=0.033 Score=42.30 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=72.6
Q ss_pred cccceeEEecCCCeeeeeC---ceEEEEEecCCCh-hhhhhhHHHHHHHHhcC-----CcEEEEEECCC-----------
Q 031271 57 CINEMVLNINDGGNVVFWV---LKVVIYYTAAWCG-PCKFIEPYVKDFAAMYT-----DVQFIKIDVDW----------- 116 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~-~C~~~~~~l~~~~~~~~-----~v~f~~vd~d~----------- 116 (162)
....+.+.+.+|+.+...+ ++++|+|.-+.|+ -|-.+...+.++.++.. ++.++.|.+|.
T Consensus 46 ~~g~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y 125 (207)
T COG1999 46 IGGDFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKY 125 (207)
T ss_pred cCCceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHH
Confidence 3347999999999887655 9999999988886 68888888877777664 24444444431
Q ss_pred ------------------cHHHHHhcCCCCC--c-------------cEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 117 ------------------LPEAAKAFDLIDV--L-------------PTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 117 ------------------~~~l~~~~~i~~~--~-------------Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
..++++.|++ .. + ..++++ ++|+.+..+.+. .++.+.+.|+..+
T Consensus 126 ~~~~~~~~~~~ltg~~~~~~~~~k~~~V-~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~ 204 (207)
T COG1999 126 AELNFDPRWIGLTGTPEQIEEVAKAYGV-FYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLL 204 (207)
T ss_pred hcccCCCCeeeeeCCHHHHHHHHHHhcc-eeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHh
Confidence 1245666666 31 1 123334 699999888776 7899999888765
No 208
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.023 Score=41.09 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=69.3
Q ss_pred cceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC--------cHH---HH-
Q 031271 59 NEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW--------LPE---AA- 121 (162)
Q Consensus 59 ~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~--------~~~---l~- 121 (162)
=++++.+.+|+.+..++ |+++|.=.|+-|+.--+ ...|+.+.++|.+ +.++.+-+.+ +.+ +|
T Consensus 6 yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~ 84 (162)
T COG0386 6 YDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQ 84 (162)
T ss_pred ccceeeccCCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHH
Confidence 35778888888886655 88888888999998764 4567777777754 6665554421 111 11
Q ss_pred HhcCC-----------------------------------CCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 031271 122 KAFDL-----------------------------------IDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRRN 162 (162)
Q Consensus 122 ~~~~i-----------------------------------~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~~ 162 (162)
..||+ .-.+-.+++-++|+++.|+... .|+++...|++.++
T Consensus 85 ~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 85 LNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred hccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 23333 0112246666899999999888 79999999888763
No 209
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.48 E-value=0.018 Score=40.09 Aligned_cols=83 Identities=19% Similarity=0.179 Sum_probs=53.0
Q ss_pred ceEEEEEecCCChhhhhhhHHHHHHH-Hhc---CCcEEEEEECC-----CcHHHHHhcCCCC-CccEEEEEc-CCeEEEE
Q 031271 76 LKVVIYYTAAWCGPCKFIEPYVKDFA-AMY---TDVQFIKIDVD-----WLPEAAKAFDLID-VLPTFVLVK-RGKEIDR 144 (162)
Q Consensus 76 k~vvv~F~a~wC~~C~~~~~~l~~~~-~~~---~~v~f~~vd~d-----~~~~l~~~~~i~~-~~Ptiv~~~-~Gk~i~~ 144 (162)
+.++|.|=.. -|--.-...+.+++ +.. +++.+..|.+. .|.+|+++|++.. .+|.+.+|. +....-+
T Consensus 22 ~~~LVKFD~a--yPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~~~~~pv~ 99 (126)
T PF07912_consen 22 KYVLVKFDVA--YPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVGDKEEPVR 99 (126)
T ss_dssp SEEEEEEEES--S--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEESSTTSEEE
T ss_pred ceEEEEEecc--CCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecCCCCCCcc
Confidence 4458888443 33333455666666 332 45888888774 6789999999832 479999986 4444444
Q ss_pred E--cCC-CHHHHHHHHHHH
Q 031271 145 V--VGA-KKDELQMKTEKR 160 (162)
Q Consensus 145 ~--~g~-~~~~l~~~l~~~ 160 (162)
+ .|. +.+.|+.|++++
T Consensus 100 ~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 100 YPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp E-TCS-S-HHHHHHHHHHT
T ss_pred CCccCCccHHHHHHHHHhC
Confidence 4 454 899999999986
No 210
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=96.43 E-value=0.015 Score=42.93 Aligned_cols=62 Identities=23% Similarity=0.341 Sum_probs=45.7
Q ss_pred eeccccceeEEecCCCeeeee---CceEEEEEecCCC-hhhhhhhHHHHHHHHhc----CCcEEEEEECC
Q 031271 54 LIYCINEMVLNINDGGNVVFW---VLKVVIYYTAAWC-GPCKFIEPYVKDFAAMY----TDVQFIKIDVD 115 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~---~k~vvv~F~a~wC-~~C~~~~~~l~~~~~~~----~~v~f~~vd~d 115 (162)
.....+++.+.+.+|+.+... .|+++|+|.-+.| ..|-.+...+.++.+.+ .++.++.|.+|
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 334578899999999999776 4999999999999 47887777776666544 24777777776
No 211
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.41 E-value=0.038 Score=40.17 Aligned_cols=65 Identities=22% Similarity=0.137 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCC-eEEEEEcC--CCHHHHHHHHHHHh
Q 031271 92 FIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG-KEIDRVVG--AKKDELQMKTEKRR 161 (162)
Q Consensus 92 ~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~G-k~i~~~~g--~~~~~l~~~l~~~~ 161 (162)
.....+.++++.+.+ +.|+.+. ++++++.+++ .. |++++|+++ +....+.| .+.+.|.+||..+.
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~-~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGI-KE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTC-SS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCC-CC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhc
Confidence 345678889998884 8888877 6778999999 77 999999763 33344555 48999999998763
No 212
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.034 Score=42.75 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=26.0
Q ss_pred ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEE
Q 031271 76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQF 109 (162)
Q Consensus 76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f 109 (162)
+.+++.|....|++|+...+.+++.....+++.+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~ 118 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRL 118 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcCCCce
Confidence 5668889999999998888888776665555433
No 213
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.074 Score=39.09 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=62.4
Q ss_pred ccccCCceeeeccccceeEEecCCCeeeeeC----ceEEEEEe----cCCCh--hhhhhhHHHHHHHHhcCCcEEEEEEC
Q 031271 45 VMTNETGFCLIYCINEMVLNINDGGNVVFWV----LKVVIYYT----AAWCG--PCKFIEPYVKDFAAMYTDVQFIKIDV 114 (162)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----k~vvv~F~----a~wC~--~C~~~~~~l~~~~~~~~~v~f~~vd~ 114 (162)
++.+.+...+....|+++|.+.||+.+...+ ++||++|| +|.|. .| .++..++++.+.+ ..++.+..
T Consensus 56 ~Ssds~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaC-gFRDnY~k~kka~--aeV~GlS~ 132 (211)
T KOG0855|consen 56 VSSDSLKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQAC-GFRDNYEKFKKAG--AEVIGLSG 132 (211)
T ss_pred ccccceeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccc-cccccHHHHhhcC--ceEEeecc
Confidence 3444455566667899999999999886644 79999998 34552 23 3466777776644 55555554
Q ss_pred C---------------------CcHHHHHhcCCCCCcc--------EEEEEcCC-eEEEEEcCCC
Q 031271 115 D---------------------WLPEAAKAFDLIDVLP--------TFVLVKRG-KEIDRVVGAK 149 (162)
Q Consensus 115 d---------------------~~~~l~~~~~i~~~~P--------tiv~~~~G-k~i~~~~g~~ 149 (162)
| .-.++...+|. ...| +++|.++| +.+.+-..++
T Consensus 133 D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~lGa-~k~p~gg~~~Rsh~if~kg~~k~~ik~~~is 196 (211)
T KOG0855|consen 133 DDSASQKAFASKQNLPYHLLSDPKNEVIKDLGA-PKDPFGGLPGRSHYIFDKGGVKQLIKNNQIS 196 (211)
T ss_pred CchHHHHHhhhhccCCeeeecCcchhHHHHhCC-CCCCCCCcccceEEEEecCCeEEEEEecccC
Confidence 4 22366777776 5544 45555554 4444444443
No 214
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.28 E-value=0.084 Score=35.21 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=49.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhc-CCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcC-CeEEEEE-cCC-CHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMY-TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR-GKEIDRV-VGA-KKDELQ 154 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~-~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~-Gk~i~~~-~g~-~~~~l~ 154 (162)
+|-|+..--. .....+.+++..+ .+..|.. ....++...+++ ..|.++++++ ......+ .|. +.+.|.
T Consensus 23 Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~---~~~~~~~~~~~~--~~~~i~l~~~~~e~~~~y~~g~~~~~~l~ 94 (102)
T cd03066 23 LIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFA---TFDSKVAKKLGL--KMNEVDFYEPFMEEPVTIPDKPYSEEELV 94 (102)
T ss_pred EEEEECCCCC---HHHHHHHHHHHhhhcCCEEEE---ECcHHHHHHcCC--CCCcEEEeCCCCCCCcccCCCCCCHHHHH
Confidence 4555554333 3455678888888 4577744 444567788887 5799999954 3333334 555 899999
Q ss_pred HHHHHHh
Q 031271 155 MKTEKRR 161 (162)
Q Consensus 155 ~~l~~~~ 161 (162)
+||..+.
T Consensus 95 ~fi~~~~ 101 (102)
T cd03066 95 DFVEEHK 101 (102)
T ss_pred HHHHHhc
Confidence 9998753
No 215
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=96.17 E-value=0.21 Score=35.51 Aligned_cols=96 Identities=14% Similarity=0.274 Sum_probs=66.0
Q ss_pred hHHHHHHhh----hcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCCh----hhhhh--hHHHHH
Q 031271 30 QWRSQYEAS----KQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCG----PCKFI--EPYVKD 99 (162)
Q Consensus 30 ~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~----~C~~~--~~~l~~ 99 (162)
.+++++..| ++..|++ +|+.+++... .|+.. .+.+.+
T Consensus 5 s~~~Al~~A~~~~~~e~K~L---------------------------------~VYLH~~~~~~t~~Fc~~~L~se~Vi~ 51 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLL---------------------------------AIYLHHDESVLSNVFCSQLLCAESIVQ 51 (136)
T ss_pred cHHHHHHHHhhhhhhhcceE---------------------------------EEEEcCCCCccHHHHHHHHhcCHHHHH
Confidence 467778877 7778888 9999998764 45543 222233
Q ss_pred HHHhcCCcEEEEEECCCcH------------------HHHHhcCCCCCccEEEEE-cC-C--eEEEEEcCC-CHHHHHHH
Q 031271 100 FAAMYTDVQFIKIDVDWLP------------------EAAKAFDLIDVLPTFVLV-KR-G--KEIDRVVGA-KKDELQMK 156 (162)
Q Consensus 100 ~~~~~~~v~f~~vd~d~~~------------------~l~~~~~i~~~~Ptiv~~-~~-G--k~i~~~~g~-~~~~l~~~ 156 (162)
+.+ .++.+..-|++... ..++.++. ..+|.+.++ +. + .++.++.|. ++++|...
T Consensus 52 fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~-~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~ 128 (136)
T cd02990 52 YLS--QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKT-DQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMR 128 (136)
T ss_pred HHH--cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCc-CCCCeEEEEEecCCceEEEEEEECCCCHHHHHHH
Confidence 322 24777777876531 24566788 999987777 32 2 678899999 89999988
Q ss_pred HHHHh
Q 031271 157 TEKRR 161 (162)
Q Consensus 157 l~~~~ 161 (162)
|.+..
T Consensus 129 L~~~v 133 (136)
T cd02990 129 LIEAM 133 (136)
T ss_pred HHHHH
Confidence 87654
No 216
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=96.13 E-value=0.049 Score=42.58 Aligned_cols=104 Identities=19% Similarity=0.209 Sum_probs=70.8
Q ss_pred cccceeEEecCCCeeeeeC---ceEEEEEecCCChh-hhhhhHHHHHHHHhc---CCc----EEEEEECCC---------
Q 031271 57 CINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGP-CKFIEPYVKDFAAMY---TDV----QFIKIDVDW--------- 116 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~-C~~~~~~l~~~~~~~---~~v----~f~~vd~d~--------- 116 (162)
..-+|+|.+.+|+.+..++ |=++++|.-+.||. |-.....+.++.++. +++ .|+.||-..
T Consensus 118 iGGpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY 197 (280)
T KOG2792|consen 118 IGGPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEY 197 (280)
T ss_pred cCCceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHH
Confidence 3467999999999998887 88899999999984 766555554444433 232 566666632
Q ss_pred -----------------cHHHHHhcCCCCCc--c-----------EEEEE---cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 117 -----------------LPEAAKAFDLIDVL--P-----------TFVLV---KRGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 117 -----------------~~~l~~~~~i~~~~--P-----------tiv~~---~~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
-..+|+.|.| -.- | ++++| ++|+.++.+... +++++.+.|.++.
T Consensus 198 ~~eF~pkllGLTGT~eqvk~vak~yRV-Yfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 198 VSEFHPKLLGLTGTTEQVKQVAKKYRV-YFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHV 275 (280)
T ss_pred HHhcChhhhcccCCHHHHHHHHHHhEE-eeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHH
Confidence 1245666655 110 1 35555 789999877655 8999988887764
No 217
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.85 E-value=0.058 Score=38.83 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=39.8
Q ss_pred EEEEecC------CChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHH----HHhcCC---CCCccEEEEEcCCeEEE
Q 031271 79 VIYYTAA------WCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEA----AKAFDL---IDVLPTFVLVKRGKEID 143 (162)
Q Consensus 79 vv~F~a~------wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l----~~~~~i---~~~~Ptiv~~~~Gk~i~ 143 (162)
|+.|+++ +|++|.++...|+.+ ++.|-.+|++..+++ .+.++. ...+|.+++ +|+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG 72 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG 72 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence 3445666 999999999888775 688888999876543 344331 147787754 776653
No 218
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.033 Score=35.36 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=38.7
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC--------------CcHHH--HHhcCCCCCccEEEEEcCCeEEE
Q 031271 80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD--------------WLPEA--AKAFDLIDVLPTFVLVKRGKEID 143 (162)
Q Consensus 80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d--------------~~~~l--~~~~~i~~~~Ptiv~~~~Gk~i~ 143 (162)
+.|++..||.|.....+|+++. +.+=.|+++ +.+++ .+.+|- -++|.+++ .+|+++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~-----v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gy-iGIPall~-~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN-----VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGY-IGIPALLT-DDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC-----CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCc-ccceEEEe-CCCcEEE
Confidence 5699999999999888887763 333333332 33333 456777 79999876 6776664
No 219
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=95.83 E-value=0.16 Score=37.19 Aligned_cols=34 Identities=18% Similarity=0.504 Sum_probs=28.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKI 112 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~v 112 (162)
|.+|+..-||+|-...+.+.++.+.+++ +.+..+
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 7889999999999999999999999966 444444
No 220
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.57 E-value=0.045 Score=40.40 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=21.8
Q ss_pred EEecCCChhhhhhhHHHHHHHHhcCC
Q 031271 81 YYTAAWCGPCKFIEPYVKDFAAMYTD 106 (162)
Q Consensus 81 ~F~a~wC~~C~~~~~~l~~~~~~~~~ 106 (162)
+|..|.|+.|-...|.+.++..+|++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 58999999999999999999999986
No 221
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.47 E-value=0.011 Score=39.83 Aligned_cols=75 Identities=13% Similarity=0.099 Sum_probs=44.8
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc----HHHHHhcCCCCCccEEEEE-cCCeEEEE-----EcCCC
Q 031271 80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL----PEAAKAFDLIDVLPTFVLV-KRGKEIDR-----VVGAK 149 (162)
Q Consensus 80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~----~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~-----~~g~~ 149 (162)
..|+.++|+.|++....|++. ++.|-.+|+.+. .++.+.++. .+.+.--++ ++|..... ..+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~~l~~~~~~-~~~~~~~li~~~~~~~~~l~~~~~~~ls 75 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKEPPTKEELKELLAK-LGLGVEDLFNTRGTPYRKLGLADKDELS 75 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccCCCCHHHHHHHHHh-cCCCHHHHHhcCCchHHHcCCccccCCC
Confidence 468899999999998888773 666667776542 344444444 443322222 34433221 22446
Q ss_pred HHHHHHHHHHH
Q 031271 150 KDELQMKTEKR 160 (162)
Q Consensus 150 ~~~l~~~l~~~ 160 (162)
.+++.++|.++
T Consensus 76 ~~e~~~~l~~~ 86 (105)
T cd02977 76 DEEALELMAEH 86 (105)
T ss_pred HHHHHHHHHhC
Confidence 78888877654
No 222
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.13 Score=37.69 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=71.0
Q ss_pred cccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECC--------CcHH----
Q 031271 57 CINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD--------WLPE---- 119 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d--------~~~~---- 119 (162)
+.=+++..+.+|+.+..+. |++++.=-|+.|+.-......|..+.++|.+ +.++..-+. .+.+
T Consensus 13 siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f 92 (171)
T KOG1651|consen 13 SIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNF 92 (171)
T ss_pred ceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHH
Confidence 4456899999999887655 7777777799999988777788888888853 666555442 1111
Q ss_pred HHHhcCC----------------------------------CCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 120 AAKAFDL----------------------------------IDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 120 l~~~~~i----------------------------------~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
+..+|+. .-.+-.|++-++|+++.|+... ++..++.-|++++
T Consensus 93 ~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL 169 (171)
T KOG1651|consen 93 VKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLL 169 (171)
T ss_pred HHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHh
Confidence 2233332 0122246666999999999877 6777777777664
No 223
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.02 E-value=0.36 Score=30.23 Aligned_cols=70 Identities=10% Similarity=0.086 Sum_probs=43.0
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC----cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHH
Q 031271 80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW----LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQM 155 (162)
Q Consensus 80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~----~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~ 155 (162)
..|+.++|++|.+..-.|++. ++.|-.++++. .+++.+..+. ..+|+++.-.+|..+ .....+.+
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l-----~es~~I~~ 71 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQM-----FESADIVK 71 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEE-----EcHHHHHH
Confidence 457788999999987777664 44444455543 2345555566 899988542234322 24566767
Q ss_pred HHHHH
Q 031271 156 KTEKR 160 (162)
Q Consensus 156 ~l~~~ 160 (162)
+|.+.
T Consensus 72 yL~~~ 76 (77)
T cd03041 72 YLFKT 76 (77)
T ss_pred HHHHh
Confidence 66653
No 224
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=94.98 E-value=0.02 Score=39.08 Aligned_cols=75 Identities=19% Similarity=0.320 Sum_probs=44.6
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH----HHHHhcCCCCCccEEEEE-cCCeEEEE------EcCC
Q 031271 80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP----EAAKAFDLIDVLPTFVLV-KRGKEIDR------VVGA 148 (162)
Q Consensus 80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~----~l~~~~~i~~~~Ptiv~~-~~Gk~i~~------~~g~ 148 (162)
..|+.++|+.|++....|++- ++.|-.+|+.+.+ ++.+-++. .+.|..-++ ++|..... ..+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~el~~~~~~-~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 75 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEEPPSKEELKKWLEK-SGLPLKKFFNTSGKSYRELGLKDKLPSL 75 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCCcccHHHHHHHHHH-cCCCHHHHHhcCCchHHhCCcccccccC
Confidence 358899999999998888773 6777777775443 34444444 445533333 34432211 1233
Q ss_pred CHHHHHHHHHHH
Q 031271 149 KKDELQMKTEKR 160 (162)
Q Consensus 149 ~~~~l~~~l~~~ 160 (162)
+.+++.+++.++
T Consensus 76 s~~e~~~~l~~~ 87 (111)
T cd03036 76 SEEEALELLSSD 87 (111)
T ss_pred CHHHHHHHHHhC
Confidence 556677776654
No 225
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=94.83 E-value=0.11 Score=32.77 Aligned_cols=56 Identities=20% Similarity=0.127 Sum_probs=46.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcC-C-cEEEEEECCCcHHHHHhcCCCCCccEEEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-D-VQFIKIDVDWLPEAAKAFDLIDVLPTFVL 135 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~ 135 (162)
+..|-+...+.+.+....+.++-+++. + +.+-.||+.++|+++..+++ ..+||++-
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~i-vAtPtLvk 61 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKI-VATPTLVK 61 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCE-EEechhhh
Confidence 555666676889998888888877763 3 88899999999999999999 99999764
No 226
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=94.38 E-value=0.43 Score=36.20 Aligned_cols=78 Identities=26% Similarity=0.436 Sum_probs=52.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-----------c-------HHHHHhcCC-CCCccEEEEEcCC
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-----------L-------PEAAKAFDL-IDVLPTFVLVKRG 139 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-----------~-------~~l~~~~~i-~~~~Ptiv~~~~G 139 (162)
|=.|++..|..|-.....|.+++.+ +++..+...+|- . ..++++++. ..++|.+++ ||
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--nG 78 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--NG 78 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--TT
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--CC
Confidence 5678999999999999999999998 588888888861 1 235555653 047788776 88
Q ss_pred eEEEEEcCCCHHHHHHHHHHHh
Q 031271 140 KEIDRVVGAKKDELQMKTEKRR 161 (162)
Q Consensus 140 k~i~~~~g~~~~~l~~~l~~~~ 161 (162)
+.- ..|.+...+...|.+..
T Consensus 79 ~~~--~~g~~~~~~~~ai~~~~ 98 (202)
T PF06764_consen 79 REH--RVGSDRAAVEAAIQAAR 98 (202)
T ss_dssp TEE--EETT-HHHHHHHHHHHH
T ss_pred eee--eeccCHHHHHHHHHHhh
Confidence 654 46888888888887653
No 227
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=94.28 E-value=0.15 Score=39.92 Aligned_cols=61 Identities=13% Similarity=0.018 Sum_probs=39.8
Q ss_pred CeeeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEE
Q 031271 69 GNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136 (162)
Q Consensus 69 ~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~ 136 (162)
.++..+.|+.+++..+.|||.|...+=.|--...+|.++.+....-+. .+.-..+|+++|.
T Consensus 52 ~d~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~-------~d~~pn~Ptl~F~ 112 (249)
T PF06053_consen 52 QDLAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDP-------YDNYPNTPTLIFN 112 (249)
T ss_pred cccCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCc-------ccCCCCCCeEEEe
Confidence 556777789999999999999998765555555557776332222222 1111578887765
No 228
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=1.4 Score=33.19 Aligned_cols=104 Identities=18% Similarity=0.189 Sum_probs=65.0
Q ss_pred ccccceeEEec-CCC---eeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECC----------
Q 031271 56 YCINEMVLNIN-DGG---NVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD---------- 115 (162)
Q Consensus 56 ~~~~~~~~~~~-~~~---~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d---------- 115 (162)
...|+|..... .|. .+...+ |-++++|| ++.-+.|-.....+.+...+|. ++.++.+.+|
T Consensus 7 ~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~ 86 (194)
T COG0450 7 KKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKA 86 (194)
T ss_pred CcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHh
Confidence 34566666655 553 444433 55577777 5566778777767766666664 5888888775
Q ss_pred ------------------CcHHHHHhcCCCCC----cc---EEEEEcCCeEEEEE-----cCCCHHHHHHHHHHH
Q 031271 116 ------------------WLPEAAKAFDLIDV----LP---TFVLVKRGKEIDRV-----VGAKKDELQMKTEKR 160 (162)
Q Consensus 116 ------------------~~~~l~~~~~i~~~----~P---tiv~~~~Gk~i~~~-----~g~~~~~l~~~l~~~ 160 (162)
...++++.||+ .. .. +|++-++|++-... .|.+.+++...|+.+
T Consensus 87 ~~~~~~gi~~i~~PmiaD~~~~vs~~ygv-l~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 87 TIREAGGIGKIKFPMIADPKGEIARAYGV-LHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred cHHhcCCccceecceEEcCchhHHHHcCC-cccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 23478999998 32 11 34444788654433 266788888777643
No 229
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=94.23 E-value=0.36 Score=29.62 Aligned_cols=57 Identities=18% Similarity=0.171 Sum_probs=38.6
Q ss_pred EEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-cHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 81 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-LPEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 81 ~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-~~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
.|+.+||++|++..-.+++..- .+.+..++... .+++.+.... ..+|++.. .+|..+
T Consensus 3 ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~-~~g~~l 60 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPAEMLAASPK-GTVPVLVL-GNGTVI 60 (71)
T ss_pred EEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCHHHHHHCCC-CCCCEEEE-CCCcEE
Confidence 4778999999998777765422 25556666543 4566676777 89999864 346554
No 230
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=93.99 E-value=0.46 Score=39.77 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=55.2
Q ss_pred EEEEecCCChhhhhhh--HHHHHHHHhcCC--cEEEEEECC--CcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CH
Q 031271 79 VIYYTAAWCGPCKFIE--PYVKDFAAMYTD--VQFIKIDVD--WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KK 150 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~--~~l~~~~~~~~~--v~f~~vd~d--~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~ 150 (162)
+|.|-+........+. -.........-. +..++|+.. ....+..-|.+ ..+|.+.++ ..|..+..+.|. ..
T Consensus 22 fVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~-v~vPs~ffIg~sGtpLevitg~v~a 100 (506)
T KOG2507|consen 22 FVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPY-VSVPSIFFIGFSGTPLEVITGFVTA 100 (506)
T ss_pred EEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhccc-ccccceeeecCCCceeEEeeccccH
Confidence 5556666666666665 222333222222 444555543 44567888999 999998877 899999999999 88
Q ss_pred HHHHHHHHHH
Q 031271 151 DELQMKTEKR 160 (162)
Q Consensus 151 ~~l~~~l~~~ 160 (162)
++|...|++.
T Consensus 101 deL~~~i~Kv 110 (506)
T KOG2507|consen 101 DELASSIEKV 110 (506)
T ss_pred HHHHHHHHHH
Confidence 9998888765
No 231
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=93.93 E-value=0.021 Score=45.70 Aligned_cols=83 Identities=13% Similarity=0.287 Sum_probs=60.7
Q ss_pred eEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEE-CCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHH
Q 031271 77 KVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID-VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQ 154 (162)
Q Consensus 77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd-~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~ 154 (162)
+|-+.||++||+..+..+|.+.-....|+.+....++ .-..+.....|++ ...|++.+.. ..--.++-|. +...|+
T Consensus 78 ~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~-~~~ps~~~~n-~t~~~~~~~~r~l~sLv 155 (319)
T KOG2640|consen 78 YVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGI-HSEPSNLMLN-QTCPASYRGERDLASLV 155 (319)
T ss_pred cccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhcccc-ccCCcceeec-cccchhhcccccHHHHH
Confidence 3368899999999999999998887778755444443 2356778899999 9999988753 3333444555 788888
Q ss_pred HHHHHHh
Q 031271 155 MKTEKRR 161 (162)
Q Consensus 155 ~~l~~~~ 161 (162)
++..+..
T Consensus 156 ~fy~~i~ 162 (319)
T KOG2640|consen 156 NFYTEIT 162 (319)
T ss_pred HHHHhhc
Confidence 8776653
No 232
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=93.14 E-value=0.95 Score=30.98 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=21.1
Q ss_pred ECCCcHHHHHhcCCCCCccEEEEEcC
Q 031271 113 DVDWLPEAAKAFDLIDVLPTFVLVKR 138 (162)
Q Consensus 113 d~d~~~~l~~~~~i~~~~Ptiv~~~~ 138 (162)
.+.=+|.+.++|+| ..+|++++.++
T Consensus 56 ~v~IdP~~F~~y~I-~~VPa~V~~~~ 80 (113)
T PF09673_consen 56 GVQIDPRLFRQYNI-TAVPAFVVVKD 80 (113)
T ss_pred ceeEChhHHhhCCc-eEcCEEEEEcC
Confidence 34446889999999 99999999877
No 233
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=93.06 E-value=0.98 Score=31.82 Aligned_cols=43 Identities=33% Similarity=0.450 Sum_probs=30.8
Q ss_pred CCcHHHHHhcCCCCCccEEEEEcCCe-----------EEEEEcCC-CHHHHHHHHH
Q 031271 115 DWLPEAAKAFDLIDVLPTFVLVKRGK-----------EIDRVVGA-KKDELQMKTE 158 (162)
Q Consensus 115 d~~~~l~~~~~i~~~~Ptiv~~~~Gk-----------~i~~~~g~-~~~~l~~~l~ 158 (162)
.=+|.+.++|+| ..+|++++.+++. ...+..|- +.+.-.+.+.
T Consensus 58 ~IdP~lF~~f~I-~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 58 QIDPQWFKQFDI-TAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred EEChHHHhhcCc-eEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 346889999999 9999999998774 35556665 5544444443
No 234
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=92.86 E-value=0.21 Score=35.10 Aligned_cols=34 Identities=18% Similarity=0.479 Sum_probs=25.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL 117 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~ 117 (162)
+..|+.++|+.|++....|++. ++.|-.+|+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCC
Confidence 4568899999999998887763 666666776543
No 235
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=92.71 E-value=0.26 Score=33.77 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=26.8
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH
Q 031271 80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP 118 (162)
Q Consensus 80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~ 118 (162)
..|+.++|+.|++....|++ .++.|-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-----NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cCCceEEEecCCCh
Confidence 35889999999999888877 36777788876544
No 236
>PHA03075 glutaredoxin-like protein; Provisional
Probab=92.34 E-value=0.24 Score=34.07 Aligned_cols=29 Identities=24% Similarity=0.539 Sum_probs=25.2
Q ss_pred ceEEEEEecCCChhhhhhhHHHHHHHHhc
Q 031271 76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMY 104 (162)
Q Consensus 76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~ 104 (162)
|.|++.|.-|-|+-|......+.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 45699999999999999999998877766
No 237
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=91.98 E-value=0.24 Score=33.41 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=25.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc
Q 031271 80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL 117 (162)
Q Consensus 80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~ 117 (162)
..|+.++|+.|++....|++- ++.|-.+|+.+.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccC
Confidence 468899999999998888774 666666666543
No 238
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=91.87 E-value=1.9 Score=26.56 Aligned_cols=71 Identities=11% Similarity=0.213 Sum_probs=43.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC--CcHHHHHhcCCCCCccEEEEEc--CCeEEEEEcCCCHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD--WLPEAAKAFDLIDVLPTFVLVK--RGKEIDRVVGAKKDELQ 154 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d--~~~~l~~~~~i~~~~Ptiv~~~--~Gk~i~~~~g~~~~~l~ 154 (162)
+..|+.+.|++|++.+-.|... ++.|-.++++ ...++ +.-+. ..+|+++.-. +|+.+. ....+.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----gi~y~~~~~~~~~~~~~-~~~~~-~~vP~l~~~~~~~~~~l~-----eS~~I~ 69 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----GIPYEVVEVNPVSRKEI-KWSSY-KKVPILRVESGGDGQQLV-----DSSVII 69 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----CCceEEEECCchhHHHH-HHhCC-CccCEEEECCCCCccEEE-----cHHHHH
Confidence 4567889999999998777654 4444444443 22343 34556 7999987542 244332 355566
Q ss_pred HHHHHHh
Q 031271 155 MKTEKRR 161 (162)
Q Consensus 155 ~~l~~~~ 161 (162)
++|++++
T Consensus 70 ~yL~~~~ 76 (77)
T cd03040 70 STLKTYL 76 (77)
T ss_pred HHHHHHc
Confidence 6766654
No 239
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=91.81 E-value=0.58 Score=30.63 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=52.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhc-CC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMY-TD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA 148 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~-~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~ 148 (162)
+=.|.+..-+.++.....+.++-+.+ ++ +.+-.||+.++|+++..+++ ..+||++-. --....++.|-
T Consensus 6 LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~I-vATPtLIK~-~P~P~rriiGd 75 (87)
T TIGR02654 6 LKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKI-LATPTLSKI-LPPPVRKIIGD 75 (87)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCE-EEecHHhhc-CCCCcceeecc
Confidence 44566777888998888888886654 44 88888999999999999999 999997643 23445566665
No 240
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=91.32 E-value=1.1 Score=27.36 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=32.7
Q ss_pred EEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeE
Q 031271 81 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE 141 (162)
Q Consensus 81 ~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~ 141 (162)
.|+.++|++|.+.+-.|....-. +..+.++........+..+- ..+|+++. .+|..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~-~~vP~L~~-~~~~~ 58 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDEATPIRMIGA-KQVPILEK-DDGSF 58 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC---eEEEECCCCchHHHHHhcCC-CccCEEEe-CCCeE
Confidence 46679999999987776654221 33333443333333445556 78898753 34544
No 241
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=91.11 E-value=1.3 Score=30.16 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=44.8
Q ss_pred ceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECC
Q 031271 60 EMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD 115 (162)
Q Consensus 60 ~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d 115 (162)
++++.+.+|+.+..+. |+++|.=.|+-|+.-. ..+.|+++.++|. ++.++.+-+.
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcn 62 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCN 62 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBS
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehH
Confidence 4678889999887766 8888888899999998 7779999999996 4777777654
No 242
>PRK09301 circadian clock protein KaiB; Provisional
Probab=91.05 E-value=0.74 Score=31.09 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=56.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhc-CC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--CHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMY-TD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--KKDELQ 154 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~-~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--~~~~l~ 154 (162)
+=.|.+..-+.++.....+.++-+.+ ++ +.+-.||+.++|+++..+++ ..+||++-. --....|+.|- +.+.+.
T Consensus 9 LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~I-vATPTLIK~-~P~P~rriiGDlsd~~kVL 86 (103)
T PRK09301 9 LKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKI-LATPTLAKI-LPPPVRKIIGDLSDREKVL 86 (103)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCe-EEecHHhhc-CCCCcceeecccccHHHHH
Confidence 55566788888998888888886654 44 88888999999999999999 999996643 23455666665 455544
Q ss_pred H
Q 031271 155 M 155 (162)
Q Consensus 155 ~ 155 (162)
.
T Consensus 87 ~ 87 (103)
T PRK09301 87 I 87 (103)
T ss_pred H
Confidence 3
No 243
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=90.99 E-value=3.3 Score=27.54 Aligned_cols=73 Identities=8% Similarity=-0.001 Sum_probs=45.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcC------C-eEEEEEcCC-C
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR------G-KEIDRVVGA-K 149 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~------G-k~i~~~~g~-~ 149 (162)
+|-|+..--. .....+.+++..++ +..|... ...+++..+++ .|++++|+. - .....+.|. +
T Consensus 22 Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~---~~~ivl~~p~~~~~k~de~~~~y~g~~~ 92 (104)
T cd03069 22 VVGFFEDEDS---KLLSEFLKAADTLRESFRFAHT---SDKQLLEKYGY---GEGVVLFRPPRLSNKFEDSSVKFDGDLD 92 (104)
T ss_pred EEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEE---ChHHHHHhcCC---CCceEEEechhhhcccCcccccccCcCC
Confidence 5555555333 35567788888884 5877543 33466777765 577788821 1 111224564 7
Q ss_pred HHHHHHHHHHH
Q 031271 150 KDELQMKTEKR 160 (162)
Q Consensus 150 ~~~l~~~l~~~ 160 (162)
.+.|.+||..+
T Consensus 93 ~~~l~~fi~~~ 103 (104)
T cd03069 93 SSKIKKFIREN 103 (104)
T ss_pred HHHHHHHHHhh
Confidence 88999999865
No 244
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=90.68 E-value=0.59 Score=28.35 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=37.5
Q ss_pred EEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC----CcHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 81 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD----WLPEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 81 ~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d----~~~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
.|+.++|++|++..-.+....-. +....++.. ..+++.+.... ..+|+++. .+|..+
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~-~~~~~l 63 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLEL-DDGTVI 63 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCC-CCCCEEEe-CCCCEE
Confidence 57789999999998777665222 444455542 24566666777 89999864 355443
No 245
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=90.31 E-value=1 Score=34.88 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=56.7
Q ss_pred eEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC------------------CcHHHHHhcCCCCCccEEEEEcC
Q 031271 77 KVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD------------------WLPEAAKAFDLIDVLPTFVLVKR 138 (162)
Q Consensus 77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d------------------~~~~l~~~~~i~~~~Ptiv~~~~ 138 (162)
.||=.|++..|..|-.....|.+++++ +++.-+...+| ....+.+.|+. ..++|--.+-|
T Consensus 43 ~VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~-~~vyTPQavvn 120 (261)
T COG5429 43 GVVELFTSQGCSSCPPADANLAKLADD-PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGA-RGVYTPQAVVN 120 (261)
T ss_pred eEEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhcc-CCCCCchheee
Confidence 346778899999999999999998874 46666666554 22356777777 76666555558
Q ss_pred CeEEEEEcCCCHHHHHHHHHHH
Q 031271 139 GKEIDRVVGAKKDELQMKTEKR 160 (162)
Q Consensus 139 Gk~i~~~~g~~~~~l~~~l~~~ 160 (162)
|+... .|.++..+...|...
T Consensus 121 Gr~~~--~Gad~~~i~~~i~a~ 140 (261)
T COG5429 121 GRVHA--NGADPGAIEDAIAAM 140 (261)
T ss_pred chhhh--cCCCHHHHHHHHHHh
Confidence 86553 477888888877643
No 246
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=90.19 E-value=3.5 Score=35.44 Aligned_cols=70 Identities=11% Similarity=0.154 Sum_probs=46.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE-EEEcCC-CHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI-DRVVGA-KKDELQMK 156 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i-~~~~g~-~~~~l~~~ 156 (162)
-|.++.+.|..|..+...+++++..-+.+.+...+.+ ...|++.+..+|+.. -++.|. .-.+|..+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~------------~~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~ 89 (517)
T PRK15317 22 ELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD------------VRKPSFSITRPGEDTGVRFAGIPMGHEFTSL 89 (517)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC------------CCCCEEEEEcCCccceEEEEecCccHHHHHH
Confidence 4445555899999999999999987666666442211 247999888766432 456676 66666666
Q ss_pred HHHH
Q 031271 157 TEKR 160 (162)
Q Consensus 157 l~~~ 160 (162)
|...
T Consensus 90 i~~i 93 (517)
T PRK15317 90 VLAL 93 (517)
T ss_pred HHHH
Confidence 6544
No 247
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=90.14 E-value=0.65 Score=31.66 Aligned_cols=34 Identities=15% Similarity=0.430 Sum_probs=25.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL 117 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~ 117 (162)
+..|+.++|+.|++....|++. ++.|-.+|+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence 3468899999999998888773 566666666543
No 248
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=90.02 E-value=2.4 Score=30.22 Aligned_cols=71 Identities=14% Similarity=0.262 Sum_probs=50.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCC---CCCccEEEEEcCCeEEEEEcCCCHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDL---IDVLPTFVLVKRGKEIDRVVGAKKDELQM 155 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i---~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~ 155 (162)
++.|+.|.|+=|......++. .++.+-.+..+.-..+-++||| ..+-=|.++ +|+.+.-++ ..+.+..
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~vEGHV--Pa~aI~~ 98 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYYVEGHV--PAEAIAR 98 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEEEeccC--CHHHHHH
Confidence 788999999999987776663 3688888888888888889998 123335554 887776444 3444555
Q ss_pred HHH
Q 031271 156 KTE 158 (162)
Q Consensus 156 ~l~ 158 (162)
+++
T Consensus 99 ll~ 101 (149)
T COG3019 99 LLA 101 (149)
T ss_pred HHh
Confidence 444
No 249
>PRK12559 transcriptional regulator Spx; Provisional
Probab=89.93 E-value=0.56 Score=32.97 Aligned_cols=32 Identities=19% Similarity=0.606 Sum_probs=24.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD 115 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d 115 (162)
+..|+.++|+.|++....|++- ++.|-.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEee
Confidence 4568899999999998877764 5555555654
No 250
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=89.64 E-value=1.7 Score=26.40 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=41.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHH
Q 031271 80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE 158 (162)
Q Consensus 80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~ 158 (162)
..|+.++|+.|++..-.++...-. +....++... .+++.+.... ..+|++. .+|..+. ....+..+|.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~-~~vP~l~--~~~~~l~-----es~aI~~yL~ 70 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPY-GTVPTLV--DRDLVLY-----ESRIIMEYLD 70 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCC-CCCCEEE--ECCEEEE-----cHHHHHHHHH
Confidence 357889999999988777654222 3444455443 3456666667 8999774 3443321 3444555554
Q ss_pred H
Q 031271 159 K 159 (162)
Q Consensus 159 ~ 159 (162)
+
T Consensus 71 ~ 71 (73)
T cd03059 71 E 71 (73)
T ss_pred h
Confidence 3
No 251
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=89.63 E-value=0.39 Score=28.23 Aligned_cols=56 Identities=11% Similarity=0.021 Sum_probs=35.6
Q ss_pred EEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH--HHHHhcCCCCCccEEEEEcCCeEE
Q 031271 81 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP--EAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 81 ~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~--~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
.|+.++|+.|.+..-.++...-. +....++.+... ++....+. ..+|++.. +|..+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~--~~~~~ 60 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPL-GKVPVLED--GGLVL 60 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCC-CCCCEEEE--CCEEE
Confidence 47788999999988777665222 444445443322 35566777 89998764 46544
No 252
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=89.62 E-value=4.3 Score=34.89 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=47.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeE-EEEEcCC-CHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE-IDRVVGA-KKDELQMK 156 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~-i~~~~g~-~~~~l~~~ 156 (162)
-|.++.+.|..|..+...+++++..-+.+.+...+. +. ...|++.+..+|+. --++.|. .-.+|..+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~----------~~-~~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~ 90 (515)
T TIGR03140 22 TLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTA----------DT-LRKPSFTILRDGADTGIRFAGIPGGHEFTSL 90 (515)
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecC----------Cc-CCCCeEEEecCCcccceEEEecCCcHHHHHH
Confidence 444444479999999999999998766666654332 23 46799988877653 2455666 56666666
Q ss_pred HHHH
Q 031271 157 TEKR 160 (162)
Q Consensus 157 l~~~ 160 (162)
|...
T Consensus 91 i~~i 94 (515)
T TIGR03140 91 VLAI 94 (515)
T ss_pred HHHH
Confidence 6543
No 253
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=89.58 E-value=4.4 Score=26.77 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=44.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeE-EEEEcCC-CHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE-IDRVVGA-KKDELQMK 156 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~-i~~~~g~-~~~~l~~~ 156 (162)
++.|..+. ..|..+...+++++..-+.+.+...+.+ ...|++.+..+|+. --++.|. .-.++..+
T Consensus 23 l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~------------~~~P~~~i~~~~~~~gIrF~GiP~GhEf~Sl 89 (94)
T cd02974 23 LVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDD------------ERKPSFSINRPGEDTGIRFAGIPMGHEFTSL 89 (94)
T ss_pred EEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCC------------CCCCEEEEecCCCcccEEEEecCCchhHHHH
Confidence 45555544 9999999999999886665665443321 24799998877633 1455676 56666666
Q ss_pred HHH
Q 031271 157 TEK 159 (162)
Q Consensus 157 l~~ 159 (162)
|..
T Consensus 90 ila 92 (94)
T cd02974 90 VLA 92 (94)
T ss_pred HHH
Confidence 543
No 254
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=89.23 E-value=2.7 Score=25.52 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=37.2
Q ss_pred EEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC----CcHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 81 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD----WLPEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 81 ~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d----~~~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
.|+.++|+.|++..-.++...- .+....++.. ..+++.+.... ..+|+++. +|..+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi---~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~--~~~~l 62 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKALGL---ELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVD--NGFVL 62 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHcCC---CCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEE--CCEEE
Confidence 5788999999988777766522 2455555542 23667777677 89999963 45443
No 255
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=89.09 E-value=5.3 Score=27.05 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=52.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCC--cHHHHHhcCCCC----CccE-EEEEcCCeEEEEEcCC-C
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDW--LPEAAKAFDLID----VLPT-FVLVKRGKEIDRVVGA-K 149 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~--~~~l~~~~~i~~----~~Pt-iv~~~~Gk~i~~~~g~-~ 149 (162)
++.|..+- ..-......+.++++...+ -.++-||+.. ...||..+.+ . --|. +.=|++|..-..+... +
T Consensus 23 LvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv-~~~~kp~~~~LkHYKdG~fHkdYdR~~t 100 (112)
T cd03067 23 LVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKV-DPSSKPKPVELKHYKDGDFHTEYNRQLT 100 (112)
T ss_pred EEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHcc-CCCCCCCcchhhcccCCCccccccchhh
Confidence 55555443 3333445578888888877 6777777765 6789999999 6 4553 4457999776655554 6
Q ss_pred HHHHHHHHH
Q 031271 150 KDELQMKTE 158 (162)
Q Consensus 150 ~~~l~~~l~ 158 (162)
...+..+++
T Consensus 101 ~kSmv~Flr 109 (112)
T cd03067 101 FKSMVAFLR 109 (112)
T ss_pred HHHHHHHhh
Confidence 777777765
No 256
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=89.07 E-value=5.6 Score=27.31 Aligned_cols=80 Identities=13% Similarity=0.031 Sum_probs=48.7
Q ss_pred EEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEE-ECCCc-----------HHHHHhcCCCC--CccEEEEEcCCeE
Q 031271 79 VIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKI-DVDWL-----------PEAAKAFDLID--VLPTFVLVKRGKE 141 (162)
Q Consensus 79 vv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~v-d~d~~-----------~~l~~~~~i~~--~~Ptiv~~~~Gk~ 141 (162)
+|.|. ....+.=+.....|.+-...+. ++.++.+ +-... ..+.+.|++ . ++-.+++-++|.+
T Consensus 13 lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~-~~~~f~~vLiGKDG~v 91 (118)
T PF13778_consen 13 LVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRI-PPGGFTVVLIGKDGGV 91 (118)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCC-CCCceEEEEEeCCCcE
Confidence 45554 2344445555666666444454 3555544 33222 278889996 4 3324445599999
Q ss_pred EEEEcCC-CHHHHHHHHHH
Q 031271 142 IDRVVGA-KKDELQMKTEK 159 (162)
Q Consensus 142 i~~~~g~-~~~~l~~~l~~ 159 (162)
..+.... +.++|-..|..
T Consensus 92 K~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 92 KLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred EEecCCCCCHHHHHHHHhC
Confidence 9988777 89998888764
No 257
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=88.10 E-value=6.1 Score=26.53 Aligned_cols=74 Identities=16% Similarity=0.070 Sum_probs=42.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCe--------EEEEEcC-C
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGK--------EIDRVVG-A 148 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk--------~i~~~~g-~ 148 (162)
+|-|+..--. .....+.+++..+. ++.|.. .....+...+++ . .|.+++|+.-+ ....-.. .
T Consensus 23 VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~---t~~~~~~~~~~~-~-~~~vvl~rp~~~~~k~e~~~~~~~~~~~ 94 (107)
T cd03068 23 IIGVFSGEED---PAYQLYQDAANSLREDYKFHH---TFDSEIFKSLKV-S-PGQLVVFQPEKFQSKYEPKSHVLNKKDS 94 (107)
T ss_pred EEEEECCCCC---HHHHHHHHHHHhcccCCEEEE---EChHHHHHhcCC-C-CCceEEECcHHHhhhcCcceeeeecccc
Confidence 4555544333 34556788888884 488754 333477788888 4 56667762221 1111111 2
Q ss_pred -CHHHHHHHHHHH
Q 031271 149 -KKDELQMKTEKR 160 (162)
Q Consensus 149 -~~~~l~~~l~~~ 160 (162)
..+.|..||+++
T Consensus 95 ~~~~~~~~f~~~~ 107 (107)
T cd03068 95 TSEDELKDFFKEH 107 (107)
T ss_pred chHHHHHHHHhcC
Confidence 334488888764
No 258
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=88.00 E-value=1 Score=31.64 Aligned_cols=32 Identities=16% Similarity=0.479 Sum_probs=24.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD 115 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d 115 (162)
+..|+.++|+.|++....|++- ++.|-.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECC
Confidence 3468899999999988777663 5666666664
No 259
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=87.20 E-value=0.28 Score=31.78 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=43.1
Q ss_pred EecCCChhhhhhhHHHHHHHHhc-CC-cEEEEEECCCcHHHHHhcCCCCCccEEE
Q 031271 82 YTAAWCGPCKFIEPYVKDFAAMY-TD-VQFIKIDVDWLPEAAKAFDLIDVLPTFV 134 (162)
Q Consensus 82 F~a~wC~~C~~~~~~l~~~~~~~-~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv 134 (162)
|-+..-+.+..+...+..+.+.+ ++ +.+-.||+.++|+++..+++ ..+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~i-vAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRI-VATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEE-ECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCe-eecceEe
Confidence 44555677788888888888765 33 99999999999999999999 9999875
No 260
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=87.01 E-value=5.2 Score=24.60 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=46.2
Q ss_pred EecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHH
Q 031271 82 YTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR 160 (162)
Q Consensus 82 F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~ 160 (162)
|+.++|++|+++.=.++...- .+.+..++... ...+.+...- ..+|++. .+|..+. +...+.++|++.
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~--~~g~~l~-----dS~~I~~yL~~~ 70 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPK-GKVPVLV--DDGEVLT-----DSAAIIEYLEER 70 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTT-SBSSEEE--ETTEEEE-----SHHHHHHHHHHH
T ss_pred CCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhccc-ccceEEE--ECCEEEe-----CHHHHHHHHHHH
Confidence 678999999998766655321 25555665544 4667777788 9999997 5576553 455666666654
No 261
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.63 E-value=1.5 Score=33.72 Aligned_cols=38 Identities=34% Similarity=0.418 Sum_probs=29.5
Q ss_pred HHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 119 EAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 119 ~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
..+++.|| +++|+|++ +|+.. +.|. +++.|...|++..
T Consensus 175 ~~A~e~gI-~gVP~fv~--d~~~~--V~Gaq~~~v~~~al~~~~ 213 (225)
T COG2761 175 AAAQEMGI-RGVPTFVF--DGKYA--VSGAQPYDVLEDALRQLL 213 (225)
T ss_pred HHHHHCCC-ccCceEEE--cCcEe--ecCCCCHHHHHHHHHHHH
Confidence 46789999 99999998 44333 4577 8899999888764
No 262
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.64 E-value=1.8 Score=32.74 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=34.6
Q ss_pred HHHHhcCCCCCccEEEEEcCCeEEEEEcC--C-CHHHHHHHHHHHh
Q 031271 119 EAAKAFDLIDVLPTFVLVKRGKEIDRVVG--A-KKDELQMKTEKRR 161 (162)
Q Consensus 119 ~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g--~-~~~~l~~~l~~~~ 161 (162)
.+++++++ .++||+++-.||+...--.| + +++.+..++.+.+
T Consensus 165 ~l~~rlg~-~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 165 RLMQRLGA-AGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHhcc-CCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 47789999 99999999999988766666 3 7888888887754
No 263
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=85.23 E-value=6.5 Score=27.43 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=33.6
Q ss_pred CCcEEEEEECCCcHH----------HHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHH
Q 031271 105 TDVQFIKIDVDWLPE----------AAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE 158 (162)
Q Consensus 105 ~~v~f~~vd~d~~~~----------l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~ 158 (162)
.++.+.+.++.++|. +.+.-|. ..+|-+++ ||+++..-.=++.++|.+|+.
T Consensus 39 ~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~-e~LPitlV--dGeiv~~G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 39 QGVEVERYNLAQNPQAFVENPEVNQLLQTEGA-EALPITLV--DGEIVKTGRYPTNEELAEWLG 99 (123)
T ss_dssp TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-G-GG-SEEEE--TTEEEEESS---HHHHHHHHT
T ss_pred CCceEEEEccccCHHHHHhCHHHHHHHHHcCc-ccCCEEEE--CCEEEEecCCCCHHHHHHHhC
Confidence 469999999987653 4455688 89997765 998886532238999999875
No 264
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.36 E-value=6.2 Score=26.57 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=41.4
Q ss_pred cCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEE-EEcCCeEEE
Q 031271 84 AAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFV-LVKRGKEID 143 (162)
Q Consensus 84 a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv-~~~~Gk~i~ 143 (162)
.|-|+++.++...|.... -+.|..+|+=+++++.+...-...+||+- +|-+|+.+.
T Consensus 27 ~P~CGFS~~~vqiL~~~g----~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvG 83 (105)
T COG0278 27 FPQCGFSAQAVQILSACG----VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVG 83 (105)
T ss_pred CCCCCccHHHHHHHHHcC----CcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEec
Confidence 457888888776666542 18899999999999887665437888865 678998774
No 265
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=83.74 E-value=8.2 Score=27.98 Aligned_cols=63 Identities=14% Similarity=0.016 Sum_probs=47.4
Q ss_pred eeeccccceeEEecCCCeeeeeC---ceE-EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC
Q 031271 53 CLIYCINEMVLNINDGGNVVFWV---LKV-VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD 115 (162)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~---k~v-vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d 115 (162)
......|+|.+...|-+.+...+ |.. +..|=+=.-+-|......|.+.+.++.+..++-|..|
T Consensus 19 ~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~D 85 (158)
T COG2077 19 QVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMD 85 (158)
T ss_pred ccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCC
Confidence 33445677888888888876664 444 4445455778999999999999999999888888776
No 266
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=83.64 E-value=6.6 Score=30.47 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=30.7
Q ss_pred eEEEEEecCCChhhhhhhHHHHHHHHh-----cCCcEEEEEEC
Q 031271 77 KVVIYYTAAWCGPCKFIEPYVKDFAAM-----YTDVQFIKIDV 114 (162)
Q Consensus 77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~-----~~~v~f~~vd~ 114 (162)
++||-+-..+|..|......|+.+..+ |++|.|+.|+-
T Consensus 28 VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~ 70 (238)
T PF04592_consen 28 VTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNH 70 (238)
T ss_pred EEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcC
Confidence 348888888999999988888888754 45699999975
No 267
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=83.62 E-value=4.6 Score=25.88 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=37.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc-HHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-PEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~-~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
+..|+.+.|++|.+..-.+....- .+.++.++.... .++.+.... ..+|.++. .+|..+
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl---~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~-~~g~~l 78 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI---PHEVININLKDKPDWFLEKNPQ-GKVPALEI-DEGKVV 78 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCCcHHHHhhCCC-CCcCEEEE-CCCCEE
Confidence 455778889999998766665422 255556665443 346666667 89999874 335443
No 268
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=81.96 E-value=1.8 Score=31.83 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=27.4
Q ss_pred cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271 117 LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT 157 (162)
Q Consensus 117 ~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l 157 (162)
+...+...|+ .++|++++ +|+.+ ..|. +.+.|.+.|
T Consensus 164 ~~~~a~~~gv-~G~Pt~vv--~g~~~--~~G~~~~~~~~~~i 200 (201)
T cd03024 164 DEARARQLGI-SGVPFFVF--NGKYA--VSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHCCC-CcCCEEEE--CCeEe--ecCCCCHHHHHHHh
Confidence 3456778999 99999988 66533 5677 788888776
No 269
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=80.11 E-value=10 Score=22.63 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=35.9
Q ss_pred EEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC----CcHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 81 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD----WLPEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 81 ~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d----~~~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
.|+.++|+.|.+..-.++...- .+....++.. ..+++.+.... ..+|++.. +|..+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~--~~~~i 62 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGI---PYEWVEVDILKGETRTPEFLALNPN-GEVPVLEL--DGRVL 62 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCC---CcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEE--CCEEE
Confidence 4778999999988777666432 2455555542 23455555566 78999864 46544
No 270
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.52 E-value=14 Score=30.80 Aligned_cols=75 Identities=19% Similarity=0.326 Sum_probs=56.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT 157 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l 157 (162)
+=-|++-.|..|-.....|.-++-..|++....||-.--.+-...-+| ..+||+++ ||+... .|. +.+++...|
T Consensus 120 FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~I-MaVPtvfl--nGe~fg--~GRmtleeilaki 194 (520)
T COG3634 120 FETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNI-MAVPTVFL--NGEEFG--QGRMTLEEILAKI 194 (520)
T ss_pred EEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccc-eecceEEE--cchhhc--ccceeHHHHHHHh
Confidence 445677899999999888888888889999999997655555667788 99999865 776653 354 667666655
Q ss_pred H
Q 031271 158 E 158 (162)
Q Consensus 158 ~ 158 (162)
.
T Consensus 195 ~ 195 (520)
T COG3634 195 D 195 (520)
T ss_pred c
Confidence 4
No 271
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=77.11 E-value=14 Score=22.64 Aligned_cols=57 Identities=7% Similarity=0.042 Sum_probs=37.0
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC----CcHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD----WLPEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d----~~~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
..|+.+.|+.|++..-.+++..- .+.+..++.. ..+++.+.-.. ..+|+++ .+|..+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~--~~g~~l 62 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLI--HGDNII 62 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCcC-CCCCEEE--ECCEEE
Confidence 35778889999887755555422 2556666653 23456666667 8999985 467554
No 272
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=76.07 E-value=4.8 Score=27.45 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=23.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV 114 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~ 114 (162)
+..|+.+.|+.|++....|++- ++.|-.+|+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~ 32 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDL 32 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeeh
Confidence 4568899999999998888764 455555554
No 273
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=76.02 E-value=28 Score=25.43 Aligned_cols=63 Identities=24% Similarity=0.246 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCc-cEEEEE-cCCeEEEEEcCC-CHHHHHHHHH
Q 031271 92 FIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVL-PTFVLV-KRGKEIDRVVGA-KKDELQMKTE 158 (162)
Q Consensus 92 ~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~-Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~ 158 (162)
..+..+++-.++||.-.|+. |.+..+...++. ..- -.++++ ++|++.....|. +++++.+.|.
T Consensus 90 fVrss~e~~kk~~p~s~~vl---D~~G~~~~aW~L-~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 90 FVRSSAEDSKKEFPWSQFVL---DSNGVVRKAWQL-QEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred HHHHHHHHhhhhCCCcEEEE---cCCCceeccccC-CCCCceEEEEcCCccEEEEECCCCCHHHHHHHHH
Confidence 33444444444444333322 444455666666 333 355555 899999999998 8888877765
No 274
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=74.18 E-value=4.6 Score=29.34 Aligned_cols=34 Identities=32% Similarity=0.355 Sum_probs=24.7
Q ss_pred HHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271 118 PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT 157 (162)
Q Consensus 118 ~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l 157 (162)
...+.++|+ .++|++++ ||+. +.|. ..+.|...|
T Consensus 157 ~~~a~~~gi-~gvPtfvv--~g~~---~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGV-FGVPTFVV--DGEM---FWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCC-CcCCeEEE--CCee---ecccccHHHHHHHh
Confidence 356778999 99999988 7764 3577 566666554
No 275
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=72.38 E-value=36 Score=25.46 Aligned_cols=95 Identities=18% Similarity=0.223 Sum_probs=51.3
Q ss_pred cccceeEEecCCCeeeeeCceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECC------------------
Q 031271 57 CINEMVLNINDGGNVVFWVLKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD------------------ 115 (162)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d------------------ 115 (162)
...++++.+-.|+.+ ++.|| -++---|-...-.+...+.++. +..++.+.+|
T Consensus 22 ~f~e~~L~dy~gkyv-------vlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGl 94 (196)
T KOG0852|consen 22 EFKEIKLSDYKGKYV-------VLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGL 94 (196)
T ss_pred cceEEeehhhcccEE-------EEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCc
Confidence 455566666666655 77777 4454455444444555555554 3444444443
Q ss_pred ----------CcHHHHHhcCC---CCCcc---EEEEEcCCeEEE-----EEcCCCHHHHHHHHH
Q 031271 116 ----------WLPEAAKAFDL---IDVLP---TFVLVKRGKEID-----RVVGAKKDELQMKTE 158 (162)
Q Consensus 116 ----------~~~~l~~~~~i---~~~~P---tiv~~~~Gk~i~-----~~~g~~~~~l~~~l~ 158 (162)
.+.++++.||+ ..+++ .+++.++|..-. --.|.+.++....++
T Consensus 95 g~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvq 158 (196)
T KOG0852|consen 95 GPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQ 158 (196)
T ss_pred CccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHH
Confidence 44578999997 24555 344445553321 113556666555554
No 276
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=69.26 E-value=10 Score=28.89 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=25.0
Q ss_pred cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHH
Q 031271 117 LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKD 151 (162)
Q Consensus 117 ~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~ 151 (162)
+|.+.++|+| ..+|++|+... ...+++.|. +..
T Consensus 151 DP~lF~~F~I-~~VPafVv~C~-~~yD~I~GNIsl~ 184 (212)
T PRK13730 151 DPTLFSQYGI-RSVPALVVFCS-QGYDIIRGNLRVG 184 (212)
T ss_pred CHHHHHhcCC-ccccEEEEEcC-CCCCEEEecccHH
Confidence 6889999999 99999999743 345666665 533
No 277
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=69.17 E-value=7.9 Score=28.13 Aligned_cols=27 Identities=26% Similarity=0.642 Sum_probs=24.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcC
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYT 105 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~ 105 (162)
|.+|+-+.||.|-...+.++++.+.++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 678899999999999999999999884
No 278
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.62 E-value=19 Score=27.74 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=40.8
Q ss_pred cCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEE-EEcCCeEEE
Q 031271 84 AAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFV-LVKRGKEID 143 (162)
Q Consensus 84 a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv-~~~~Gk~i~ 143 (162)
.|-|+.++++...|... ++.|...|+-.+.++.+-......+|||- +|-+|+.+.
T Consensus 151 ~P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiG 206 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIG 206 (227)
T ss_pred cccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEecc
Confidence 45888888887777664 67788889988888776665437888865 678987663
No 279
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=68.53 E-value=8.4 Score=26.16 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=23.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC
Q 031271 80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD 115 (162)
Q Consensus 80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d 115 (162)
..|+.+.|..|++....|++- ++.|..+|+-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~ 32 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYL 32 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecc
Confidence 458899999999998888773 5555566654
No 280
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=67.18 E-value=9.4 Score=25.80 Aligned_cols=31 Identities=6% Similarity=0.139 Sum_probs=23.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC
Q 031271 80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD 115 (162)
Q Consensus 80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d 115 (162)
..|+.+.|..|++....|++- ++.|..+|+-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~ 32 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYL 32 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecc
Confidence 458899999999998777764 5556666653
No 281
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=66.01 E-value=42 Score=25.89 Aligned_cols=72 Identities=15% Similarity=0.226 Sum_probs=50.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHH
Q 031271 80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTE 158 (162)
Q Consensus 80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~ 158 (162)
=-|..-.|..|-.+...|++-. .++++.| ++....+.++-+-+| -++|.++ .||+.+. .++ +++.++..++
T Consensus 14 kI~~HktC~ssy~Lf~~L~nkg-ll~~Vki--i~a~~p~f~~~~~~V-~SvP~Vf--~DGel~~--~dpVdp~~ies~~~ 85 (265)
T COG5494 14 KIFTHKTCVSSYMLFEYLENKG-LLGKVKI--IDAELPPFLAFEKGV-ISVPSVF--IDGELVY--ADPVDPEEIESILS 85 (265)
T ss_pred EEEEecchHHHHHHHHHHHhcC-CCCCceE--EEcCCChHHHhhcce-eecceEE--EcCeEEE--cCCCCHHHHHHHHc
Confidence 3466788999999877765511 1344555 456667777777778 8999875 5998774 466 8999888876
Q ss_pred H
Q 031271 159 K 159 (162)
Q Consensus 159 ~ 159 (162)
.
T Consensus 86 G 86 (265)
T COG5494 86 G 86 (265)
T ss_pred C
Confidence 4
No 282
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=65.27 E-value=9.5 Score=25.45 Aligned_cols=57 Identities=9% Similarity=0.199 Sum_probs=36.1
Q ss_pred EecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCC--CccEEEE-EcCCe
Q 031271 82 YTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLID--VLPTFVL-VKRGK 140 (162)
Q Consensus 82 F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~--~~Ptiv~-~~~Gk 140 (162)
||-.+|+.|......+.+... ...+.|+.+.-....++.+.+++ . ...+.+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~-~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR-GGRLRFVDIQSEPDQALLASYGI-SPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC-CCCEEEEECCChhhhhHHHhcCc-CHHHHcCeeEEecCCC
Confidence 788999999999888877622 23366666644444455566776 3 2333333 57876
No 283
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=65.17 E-value=36 Score=22.27 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=38.8
Q ss_pred CCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHH-HHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHH
Q 031271 85 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEA-AKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR 160 (162)
Q Consensus 85 ~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l-~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~ 160 (162)
.+|++|++.+=.|..- --.+.+..+|....++. .+..-. ..+|+++ .+|..+ .+...+.+.|++.
T Consensus 20 g~cpf~~rvrl~L~eK---gi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~--~~~~~i-----~eS~~I~eYLde~ 85 (91)
T cd03061 20 GNCPFCQRLFMVLWLK---GVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLL--YNGEVK-----TDNNKIEEFLEET 85 (91)
T ss_pred CCChhHHHHHHHHHHC---CCceEEEEeCCCCCCHHHHHhCCC-CCCCEEE--ECCEEe-----cCHHHHHHHHHHH
Confidence 6899999887666542 11255566776665544 444555 8899654 356444 2455566666543
No 284
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=63.18 E-value=7 Score=34.21 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=42.4
Q ss_pred EEEEecCCChhhhhhhH-HH--HHHHHhcC-CcEEEEEECCCcHHHHH--------hcCCCCCccEEEEE-cCCeEE
Q 031271 79 VIYYTAAWCGPCKFIEP-YV--KDFAAMYT-DVQFIKIDVDWLPEAAK--------AFDLIDVLPTFVLV-KRGKEI 142 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~-~l--~~~~~~~~-~v~f~~vd~d~~~~l~~--------~~~i~~~~Ptiv~~-~~Gk~i 142 (162)
++-..-+.|..|..|.. .| ++.++.+. ++.-++||-++.|++-+ .+|- .++|.-++. ++=+++
T Consensus 116 fLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~-GGWPmsV~LTPdL~Pl 191 (786)
T KOG2244|consen 116 FLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGG-GGWPMSVFLTPDLKPL 191 (786)
T ss_pred EEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCC-CCCceeEEeCCCcccc
Confidence 99999999999998865 34 44555442 35556666666666444 4577 899987776 554433
No 285
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=62.56 E-value=13 Score=30.71 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=27.7
Q ss_pred HHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHH
Q 031271 121 AKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKR 160 (162)
Q Consensus 121 ~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~ 160 (162)
...+|+..+-+..++|++|+.+.++.+. =.+.|.+.|+++
T Consensus 316 ~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~~~i~~~ 356 (360)
T PRK00366 316 EADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELEAEIEAY 356 (360)
T ss_pred hCcEeEecCCCceEEEECCEEeeeeChHhHHHHHHHHHHHH
Confidence 4677883344468889999999987665 356666666654
No 286
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=60.31 E-value=41 Score=24.92 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=38.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-cHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-LPEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-~~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
+-.|+.++|+.|.+..=.|+...- .+....+|... .+++.+..-. ..+|+++ .+|..+
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~--~~g~~l 69 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNLPQDLIDLNPY-QSVPTLV--DRELTL 69 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccCCHHHHHhCCC-CCCCEEE--ECCEEe
Confidence 556777899999998866665422 25556666543 3466666566 8999986 366544
No 287
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=58.45 E-value=56 Score=23.25 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=46.0
Q ss_pred ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCcc-EEEEEcCCeEEE
Q 031271 76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLP-TFVLVKRGKEID 143 (162)
Q Consensus 76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~P-tiv~~~~Gk~i~ 143 (162)
++-.+.+|-..|+.|-.....|.+.-. -..+.|..+..+....+....++...-+ ++++.++|+...
T Consensus 7 ~p~~vvlyDG~C~lC~~~vrfLi~~D~-~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 7 KPDLVVLYDGVCPLCDGWVRFLIRRDQ-GGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLV 74 (137)
T ss_pred CCCEEEEECCcchhHHHHHHHHHHhcc-CCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEe
Confidence 334788899999999996666555321 1238888888887778888888722223 566668887664
No 288
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=57.75 E-value=41 Score=21.99 Aligned_cols=35 Identities=11% Similarity=0.219 Sum_probs=23.0
Q ss_pred CCcEEEEEECCCcHHHHHhc--------CCCCCccEEEEEcCCeEE
Q 031271 105 TDVQFIKIDVDWLPEAAKAF--------DLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 105 ~~v~f~~vd~d~~~~l~~~~--------~i~~~~Ptiv~~~~Gk~i 142 (162)
.++.|-.+|++.+++..+.+ +- ..+|.++ .+|+.+
T Consensus 29 k~I~f~eiDI~~d~~~r~em~~~~~~~~g~-~tvPQIF--i~~~~i 71 (92)
T cd03030 29 KKIEFEEVDISMNEENRQWMRENVPNENGK-PLPPQIF--NGDEYC 71 (92)
T ss_pred CCCceEEEecCCCHHHHHHHHHhcCCCCCC-CCCCEEE--ECCEEe
Confidence 36999999998776654432 34 5667765 366555
No 289
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=57.21 E-value=53 Score=21.64 Aligned_cols=67 Identities=19% Similarity=0.387 Sum_probs=36.8
Q ss_pred CChhhhhhh------HHH-HHHHHhcCC--cEEEEEECCCcH------HHHHhc--CCCCCccEEEEEcCCeEEEEEcCC
Q 031271 86 WCGPCKFIE------PYV-KDFAAMYTD--VQFIKIDVDWLP------EAAKAF--DLIDVLPTFVLVKRGKEIDRVVGA 148 (162)
Q Consensus 86 wC~~C~~~~------~~l-~~~~~~~~~--v~f~~vd~d~~~------~l~~~~--~i~~~~Ptiv~~~~Gk~i~~~~g~ 148 (162)
=|+.|..+- ..| ..+.++||+ +.|-.||+...+ +++++. .- -.+|-+++ +|+++. .|.
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede-~fYPlV~i--~~eiV~--EGn 82 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDE-LFYPLVVI--NDEIVA--EGN 82 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTS-S-SSEEEE--TTEEEE--ESS
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcc-cccceEEE--CCEEEe--cCC
Confidence 688887652 233 345678997 888999997544 333332 22 46787665 888875 355
Q ss_pred -CHHHHHHHH
Q 031271 149 -KKDELQMKT 157 (162)
Q Consensus 149 -~~~~l~~~l 157 (162)
..+.+-+.+
T Consensus 83 p~LK~I~~~~ 92 (93)
T PF07315_consen 83 PQLKDIYEEM 92 (93)
T ss_dssp --HHHHHHHH
T ss_pred ccHHHHHHhh
Confidence 555555444
No 290
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=56.95 E-value=22 Score=24.74 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=22.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV 114 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~ 114 (162)
+..|+.+.|..|++....|++- ++.|-.+|.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~-----gi~~~~~d~ 33 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS-----GHDVEVQDI 33 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEec
Confidence 5678899999999999888774 444444443
No 291
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=56.20 E-value=24 Score=23.55 Aligned_cols=31 Identities=16% Similarity=0.409 Sum_probs=21.5
Q ss_pred EecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc
Q 031271 82 YTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL 117 (162)
Q Consensus 82 F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~ 117 (162)
|+.+.|..|+++...|++ .++.+-.+|..+.
T Consensus 1 Y~~~~C~t~rka~~~L~~-----~gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-----NGIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-----TT--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHH-----cCCCeEeehhhhC
Confidence 678999999999888877 3677777888654
No 292
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=54.97 E-value=44 Score=20.04 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=36.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC----CcHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD----WLPEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d----~~~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
+-.|+.+.|+.|++..-.++...-. +....++.. ..+++.+.... ..+|.++ .+|..+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~--~~g~~l 63 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPF-GQIPALE--DGDLKL 63 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCC-CCCCEEE--ECCEEE
Confidence 4556677899999887666664322 444555542 23456666677 8999875 356443
No 293
>PRK10853 putative reductase; Provisional
Probab=54.88 E-value=20 Score=24.61 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=23.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV 114 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~ 114 (162)
+..|+.+.|..|++....|++- ++.|-.+|.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~ 32 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDY 32 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeeh
Confidence 3568899999999999888763 555555554
No 294
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=50.20 E-value=54 Score=19.56 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=35.3
Q ss_pred EEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC-CcHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 81 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-WLPEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 81 ~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d-~~~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
.|+.+.|++|.+..-.+....... .+..+.+|.. ..+++.+.... ..+|.++. .+|..+
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~-~~g~~l 62 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPL-GKIPALVL-DDGEAL 62 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCC-CCCCEEEE-CCCCEE
Confidence 467888999998876665521111 2455555533 34566666666 88997753 456444
No 295
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=50.14 E-value=20 Score=24.65 Aligned_cols=22 Identities=14% Similarity=0.519 Sum_probs=18.9
Q ss_pred EEEEecCCChhhhhhhHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDF 100 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~ 100 (162)
+-.|+.+.|..|+.....|++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5668899999999999888775
No 296
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=49.83 E-value=29 Score=28.54 Aligned_cols=76 Identities=17% Similarity=0.141 Sum_probs=45.3
Q ss_pred CChhhhhhhHHH----HHHHHhcCC------cEEEEEECCCcHHH-HHhcCCCCC-ccEEEEEcCCeEEEEEcCCC-HHH
Q 031271 86 WCGPCKFIEPYV----KDFAAMYTD------VQFIKIDVDWLPEA-AKAFDLIDV-LPTFVLVKRGKEIDRVVGAK-KDE 152 (162)
Q Consensus 86 wC~~C~~~~~~l----~~~~~~~~~------v~f~~vd~d~~~~l-~~~~~i~~~-~Ptiv~~~~Gk~i~~~~g~~-~~~ 152 (162)
.||.|-+..-.+ .++.+.+.. +.++.+-+.-..+. -..+|+... -|...+|.+|+.+.+..+.+ .++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 588887665444 333333322 33333323222222 245676223 57889999999999987774 788
Q ss_pred HHHHHHHHh
Q 031271 153 LQMKTEKRR 161 (162)
Q Consensus 153 l~~~l~~~~ 161 (162)
|+..++++.
T Consensus 343 l~~~i~~~~ 351 (361)
T COG0821 343 LEALIEAYA 351 (361)
T ss_pred HHHHHHHHH
Confidence 888887654
No 297
>PRK10026 arsenate reductase; Provisional
Probab=48.91 E-value=32 Score=24.49 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=23.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV 114 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~ 114 (162)
+..|+.+.|..|++....|++- ++.|-.+|+
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~ 34 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHY 34 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEee
Confidence 5678899999999998888774 455555554
No 298
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=47.09 E-value=28 Score=22.12 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=21.7
Q ss_pred CCccEEEEE-cCCeEEEEE--cCCCHHHHHHHHHHH
Q 031271 128 DVLPTFVLV-KRGKEIDRV--VGAKKDELQMKTEKR 160 (162)
Q Consensus 128 ~~~Ptiv~~-~~Gk~i~~~--~g~~~~~l~~~l~~~ 160 (162)
..-|+++++ .+|+.+.++ .+.+.+++.++|.+.
T Consensus 40 G~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 40 GAPPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp S---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 466899998 588766554 466899999999875
No 299
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=46.68 E-value=29 Score=25.12 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=17.8
Q ss_pred HHHHHhcCCCCCccEEEEEcCCe
Q 031271 118 PEAAKAFDLIDVLPTFVLVKRGK 140 (162)
Q Consensus 118 ~~l~~~~~i~~~~Ptiv~~~~Gk 140 (162)
...+.++|| .++||+++..++.
T Consensus 159 ~~~a~~~gv-~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGI-NGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCC-CccCEEEEEeCCe
Confidence 356778899 9999999986654
No 300
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=45.48 E-value=77 Score=22.27 Aligned_cols=31 Identities=10% Similarity=0.375 Sum_probs=22.7
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEE
Q 031271 80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 113 (162)
Q Consensus 80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd 113 (162)
|+---+-|..|.. +++++.++||++.+..++
T Consensus 101 l~te~~pC~SC~~---vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 101 LFTELPPCESCSN---VIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred EEecCCcChhHHH---HHHHHHHHCCCcEEEEec
Confidence 4444668888875 688888899997776543
No 301
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=45.11 E-value=1.4e+02 Score=23.05 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=28.0
Q ss_pred hhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHh----cCCCCC
Q 031271 88 GPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKA----FDLIDV 129 (162)
Q Consensus 88 ~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~----~~i~~~ 129 (162)
..-..+...|+++++.-+ ++.+-.+|.+.+++.+++ ||+ ..
T Consensus 43 ~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi-~~ 88 (271)
T PF09822_consen 43 PLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGI-QP 88 (271)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCC-Cc
Confidence 344455555566666556 499999999887776665 887 55
No 302
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=44.09 E-value=69 Score=19.07 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=28.0
Q ss_pred cCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 84 AAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 84 a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
.++|++|.+..-.+.. .++.|-.++++... .-.. ..+|++.. +|+.+
T Consensus 13 ~s~sp~~~~v~~~L~~-----~~i~~~~~~~~~~~----~~p~-g~vP~l~~--~g~~l 59 (72)
T cd03054 13 PSLSPECLKVETYLRM-----AGIPYEVVFSSNPW----RSPT-GKLPFLEL--NGEKI 59 (72)
T ss_pred CCCCHHHHHHHHHHHh-----CCCceEEEecCCcc----cCCC-cccCEEEE--CCEEE
Confidence 3599999998877765 35444444444321 2223 68998864 56543
No 303
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=43.51 E-value=43 Score=21.35 Aligned_cols=72 Identities=18% Similarity=0.292 Sum_probs=38.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT 157 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l 157 (162)
+.+.-++.+-.|.- .|++++..+++. ..+.+..|.+.-+.. ..-.++.+|..|+++- .|. +.+++...+
T Consensus 6 i~NIva~~~l~~~i---dL~~la~~~~~~---~YePe~fpgl~~r~~--~p~~t~~IF~sGki~i--tGaks~~~~~~a~ 75 (86)
T PF00352_consen 6 IVNIVASFDLPFEI---DLEELAEELENV---EYEPERFPGLIYRLR--NPKATVLIFSSGKIVI--TGAKSEEEAKKAI 75 (86)
T ss_dssp EEEEEEEEE-SSEB----HHHHHHHSTTE---EEETTTESSEEEEET--TTTEEEEEETTSEEEE--EEESSHHHHHHHH
T ss_pred EEEEEEEEECCCcc---CHHHHHhhccCc---EEeeccCCeEEEeec--CCcEEEEEEcCCEEEE--EecCCHHHHHHHH
Confidence 34444444444432 466666666443 223333333221221 1234788999999884 566 777777777
Q ss_pred HHH
Q 031271 158 EKR 160 (162)
Q Consensus 158 ~~~ 160 (162)
++.
T Consensus 76 ~~i 78 (86)
T PF00352_consen 76 EKI 78 (86)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 304
>COG3411 Ferredoxin [Energy production and conversion]
Probab=41.63 E-value=74 Score=19.53 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=20.7
Q ss_pred ccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271 130 LPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR 161 (162)
Q Consensus 130 ~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~ 161 (162)
=|++++|++|-.. ...+++...+.+++|+
T Consensus 17 gPvl~vYpegvWY---~~V~p~~a~rIv~~hl 45 (64)
T COG3411 17 GPVLVVYPEGVWY---TRVDPEDARRIVQSHL 45 (64)
T ss_pred CCEEEEecCCeeE---eccCHHHHHHHHHHHH
Confidence 4899999999333 2347777777777765
No 305
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=41.26 E-value=33 Score=28.39 Aligned_cols=73 Identities=19% Similarity=0.238 Sum_probs=40.6
Q ss_pred ChhhhhhhHHH----HHHHHhcC----CcEEEEEECCCc-H-HH-HHhcCCCC-Ccc-EEEEEcCCeEEEEE-cCCC-HH
Q 031271 87 CGPCKFIEPYV----KDFAAMYT----DVQFIKIDVDWL-P-EA-AKAFDLID-VLP-TFVLVKRGKEIDRV-VGAK-KD 151 (162)
Q Consensus 87 C~~C~~~~~~l----~~~~~~~~----~v~f~~vd~d~~-~-~l-~~~~~i~~-~~P-tiv~~~~Gk~i~~~-~g~~-~~ 151 (162)
||.|-+..=.+ +++.+.+. ++.+..+-+--| | +. -..||+ . +-| ..++|++|+.+.+. .... .+
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~Gi-aGgg~g~~~lf~~g~~v~k~~~ee~~vd 349 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGI-AGGGKGKGILFKKGEVVKKVIPEEEIVD 349 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEE-E-E-TTCEEEECTTEEEEEE-CSTCHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceee-ecCCCCeEEEEECCEEEEecCCHHHHHH
Confidence 66666554344 44444443 366666655433 2 22 235666 4 334 58899999999998 4443 78
Q ss_pred HHHHHHHHH
Q 031271 152 ELQMKTEKR 160 (162)
Q Consensus 152 ~l~~~l~~~ 160 (162)
.|.+.|+++
T Consensus 350 ~L~~~I~~~ 358 (359)
T PF04551_consen 350 ELIELIEEH 358 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 899998876
No 306
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=41.16 E-value=25 Score=26.25 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=23.0
Q ss_pred HHHHhcCCCCCccEEEEEcC-CeEEEEEcCC-CHHHHHHHH
Q 031271 119 EAAKAFDLIDVLPTFVLVKR-GKEIDRVVGA-KKDELQMKT 157 (162)
Q Consensus 119 ~l~~~~~i~~~~Ptiv~~~~-Gk~i~~~~g~-~~~~l~~~l 157 (162)
..+.+.|+ .++|++++-.+ |+ ...+-|. ..+.+++.|
T Consensus 170 ~~A~~~Gv-~GVP~fvv~~~~~~-~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGA-FGLPWIVVTNDKGK-TEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCC-CCCCEEEEEcCCCC-ccceecCCcHHHHHHHh
Confidence 34567799 99999998643 42 2234576 355555544
No 307
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=41.11 E-value=1.1e+02 Score=22.06 Aligned_cols=49 Identities=12% Similarity=0.311 Sum_probs=37.1
Q ss_pred ccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEE
Q 031271 58 INEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKID 113 (162)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd 113 (162)
.|.|.....+.+.+ .+.++++.++.|.-+...++.+++.|.+ +.+-.++
T Consensus 117 ~P~f~~~~~~~~~l-------~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~ 167 (171)
T PF07700_consen 117 PPSFRCEEEDDNEL-------TLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVE 167 (171)
T ss_dssp --EEEEEEEETTEE-------EEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCeEEEEECCCCEE-------EEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 66777777766666 7889999999999999999999998865 4444333
No 308
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=39.65 E-value=86 Score=21.55 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=23.4
Q ss_pred HHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 120 AAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 120 l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
-+..+|| ..+|.++|- ++.+- -|. +...-...+.++.
T Consensus 75 ~Aw~lgi-~k~PAVVfD--~~~VV--YG~tDV~~A~~~~~~~r 112 (114)
T PF07511_consen 75 DAWSLGI-TKYPAVVFD--DRYVV--YGETDVARALARIEQWR 112 (114)
T ss_pred HHHHhCc-cccCEEEEc--CCeEE--ecccHHHHHHHHHHHHh
Confidence 3558899 999999984 43332 266 5555555555543
No 309
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=37.21 E-value=42 Score=22.39 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=40.8
Q ss_pred EEecCCChhhhhh-------hHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHH
Q 031271 81 YYTAAWCGPCKFI-------EPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDEL 153 (162)
Q Consensus 81 ~F~a~wC~~C~~~-------~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l 153 (162)
.|....|+.|... ....+-+...|.++..+ +|.++ ..+++..++ .. +..|.-.-+..|.-++.+
T Consensus 17 qf~~~gCpnC~~~l~~~g~~~~v~~~tT~~f~G~i~i-~dP~~-SwVAk~l~i-~~------~~pG~YAi~V~g~lp~~i 87 (98)
T cd07973 17 QFERDGCPNCEGYLDMKGNHERVYDCTSPNFEGIIAL-MDPEK-SWVARWQRI-DK------FVPGIYAISVSGRLPEDI 87 (98)
T ss_pred cccCCCCCCCcchhccCCCccccccccCCCcceEEEE-ECCch-hHHHHHhCC-CC------CCCCeEEEEecCcCCHHH
Confidence 3788999999522 11223344455554444 34443 367888888 42 245555555667767777
Q ss_pred HHHHHH
Q 031271 154 QMKTEK 159 (162)
Q Consensus 154 ~~~l~~ 159 (162)
+..++.
T Consensus 88 ~~~l~~ 93 (98)
T cd07973 88 VEELES 93 (98)
T ss_pred HHHHHH
Confidence 766654
No 310
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=37.02 E-value=68 Score=22.01 Aligned_cols=74 Identities=15% Similarity=0.243 Sum_probs=42.7
Q ss_pred CChhhhhhhHHHHHHHHhcCCcEEEEEECCCc-HHHHHhcCC-CCCccEEEEEcCCeEE---EEEcCC----CHHHHHHH
Q 031271 86 WCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-PEAAKAFDL-IDVLPTFVLVKRGKEI---DRVVGA----KKDELQMK 156 (162)
Q Consensus 86 wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~-~~l~~~~~i-~~~~Ptiv~~~~Gk~i---~~~~g~----~~~~l~~~ 156 (162)
.|++|..+.-.|.-+-..-..+.+..|+.-.- .++....|- +.+.|++|+-.+.... ..+.|. +++.|...
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 59999998877755433222488888887643 344455542 3689998875332111 122222 46667666
Q ss_pred HHH
Q 031271 157 TEK 159 (162)
Q Consensus 157 l~~ 159 (162)
|.+
T Consensus 103 La~ 105 (112)
T PF11287_consen 103 LAE 105 (112)
T ss_pred HHH
Confidence 654
No 311
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=36.98 E-value=46 Score=27.43 Aligned_cols=54 Identities=11% Similarity=0.187 Sum_probs=41.0
Q ss_pred cEEEEEECCCcHHHHHhcCCCCCccEEEEE--cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 107 VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV--KRGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 107 v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~--~~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
+..+..|..+...+.+.|.+ ..+|.+.++ .-|+.+.+..|. .+++|..-+++++
T Consensus 133 wllV~~Dtseg~~~~~Fy~~-~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi 189 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHI-SSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFI 189 (356)
T ss_pred EEEEeeccCCCCchhhheec-cCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHH
Confidence 44445555666788999999 999987777 468999888887 7888877777654
No 312
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=36.77 E-value=77 Score=20.76 Aligned_cols=31 Identities=3% Similarity=-0.018 Sum_probs=22.5
Q ss_pred CCccEEEEEc--CCeEEEEEcCCCHHHHHHHHHHHh
Q 031271 128 DVLPTFVLVK--RGKEIDRVVGAKKDELQMKTEKRR 161 (162)
Q Consensus 128 ~~~Ptiv~~~--~Gk~i~~~~g~~~~~l~~~l~~~~ 161 (162)
..=|++++|+ +|... ...+++.+...|++|+
T Consensus 51 ~~gp~vvvyP~~~g~wy---~~v~p~~v~~Iv~~hl 83 (97)
T cd03062 51 KFAGNVIIYPKGDGIWY---GRVTPEHVPPIVDRLI 83 (97)
T ss_pred CcCCEEEEEeCCCeeEE---eecCHHHHHHHHHHHh
Confidence 4568999999 77444 2447888888887765
No 313
>PRK10387 glutaredoxin 2; Provisional
Probab=36.03 E-value=1.1e+02 Score=22.31 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=31.1
Q ss_pred EecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 82 YTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 82 F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
++.+.|++|.+..=.++...-. +....++...........+. ..+|+++. .+|..+
T Consensus 4 y~~~~sp~~~kv~~~L~~~gi~---y~~~~~~~~~~~~~~~~~p~-~~VPvL~~-~~g~~l 59 (210)
T PRK10387 4 YIYDHCPFCVKARMIFGLKNIP---VELIVLANDDEATPIRMIGQ-KQVPILQK-DDGSYM 59 (210)
T ss_pred EeCCCCchHHHHHHHHHHcCCC---eEEEEcCCCchhhHHHhcCC-cccceEEe-cCCeEe
Confidence 5678899999987666554222 33333443322222333445 68998854 356443
No 314
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=35.45 E-value=2.2e+02 Score=22.32 Aligned_cols=107 Identities=17% Similarity=0.128 Sum_probs=63.0
Q ss_pred ceeeeccccceeEEecCCCeeee----eCceE-EEEEecCCChhhhhh--hHHHHHHHHhc-CCcEEEEEECCCc-----
Q 031271 51 GFCLIYCINEMVLNINDGGNVVF----WVLKV-VIYYTAAWCGPCKFI--EPYVKDFAAMY-TDVQFIKIDVDWL----- 117 (162)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~----~~k~v-vv~F~a~wC~~C~~~--~~~l~~~~~~~-~~v~f~~vd~d~~----- 117 (162)
....+-+.|++...+.+|+.+.. ..|+. |..|+..|-..|..- .|.++++...- ..+.++.|++.++
T Consensus 94 ~~~kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~ 173 (252)
T PF05176_consen 94 KADKALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENWLKSW 173 (252)
T ss_pred cHHhCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHHHHHH
Confidence 34445578998888888875422 23554 444555565444432 23334443321 2478888887422
Q ss_pred ------------------------------HHHHHhcCCCCCccE--EEEE-cCCeEEEEEcCC-CHHHHHHHHH
Q 031271 118 ------------------------------PEAAKAFDLIDVLPT--FVLV-KRGKEIDRVVGA-KKDELQMKTE 158 (162)
Q Consensus 118 ------------------------------~~l~~~~~i~~~~Pt--iv~~-~~Gk~i~~~~g~-~~~~l~~~l~ 158 (162)
.++.+.+++ ...-+ +.++ .+|++-..-.|. +++++..+.+
T Consensus 174 l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi-~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 174 LVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGI-NNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWK 247 (252)
T ss_pred HHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCC-CCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHH
Confidence 245667777 54443 2233 688888888888 8888876654
No 315
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=34.14 E-value=2.4e+02 Score=23.13 Aligned_cols=72 Identities=11% Similarity=0.040 Sum_probs=39.8
Q ss_pred CChhhhhhhHHHHHHHHhcC---C----cEEEEEECCCcHHHHHhcCCCCCccEEEEEc--CCeEEEEEcCC---CHHHH
Q 031271 86 WCGPCKFIEPYVKDFAAMYT---D----VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK--RGKEIDRVVGA---KKDEL 153 (162)
Q Consensus 86 wC~~C~~~~~~l~~~~~~~~---~----v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~--~Gk~i~~~~g~---~~~~l 153 (162)
...+-+.+....++.+++|. + +.|.-+|......-...- - ...|+++++. +.+........ +.+.+
T Consensus 266 ns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nqilM~-a-ls~P~l~i~NtsnqeYfLse~d~qikniedi 343 (468)
T KOG4277|consen 266 NSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQILMA-A-LSEPHLFIFNTSNQEYFLSEDDPQIKNIEDI 343 (468)
T ss_pred CcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHHHHHHH-h-hcCCeEEEEecCchheeeccCChhhhhHHHH
Confidence 34567778888888887663 2 566665554332222222 2 4889988873 33322211222 45666
Q ss_pred HHHHHH
Q 031271 154 QMKTEK 159 (162)
Q Consensus 154 ~~~l~~ 159 (162)
.++|+.
T Consensus 344 lqFien 349 (468)
T KOG4277|consen 344 LQFIEN 349 (468)
T ss_pred HHHHhc
Confidence 666654
No 316
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=32.93 E-value=1.6e+02 Score=20.18 Aligned_cols=82 Identities=20% Similarity=0.153 Sum_probs=59.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcC---CcEEEEEECCCcHHHH----HhcCCCCCccEEEEE--cCCeE--EEEEc-
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDWLPEAA----KAFDLIDVLPTFVLV--KRGKE--IDRVV- 146 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~---~v~f~~vd~d~~~~l~----~~~~i~~~~Ptiv~~--~~Gk~--i~~~~- 146 (162)
++-|--+-.+.-..+.+.+.++++++. +..|+=||-|.-|-+. +.|+|.-.=|.+=++ .+..- ...-.
T Consensus 24 IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~m~~~ 103 (120)
T cd03074 24 IVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWMEMDDD 103 (120)
T ss_pred EEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEecccc
Confidence 688888899999999999999999874 5999999999877543 456663345776655 23322 22211
Q ss_pred -C-CCHHHHHHHHHHH
Q 031271 147 -G-AKKDELQMKTEKR 160 (162)
Q Consensus 147 -g-~~~~~l~~~l~~~ 160 (162)
. .+.+.|..||+..
T Consensus 104 ~d~~t~~~Le~WiedV 119 (120)
T cd03074 104 EDLPTAEELEDWIEDV 119 (120)
T ss_pred cccCcHHHHHHHHHhh
Confidence 2 3789999999864
No 317
>PRK11752 putative S-transferase; Provisional
Probab=32.79 E-value=1.8e+02 Score=22.56 Aligned_cols=53 Identities=6% Similarity=-0.081 Sum_probs=36.0
Q ss_pred EecCCChhhhhhhHHHHHH-HHhcCC--cEEEEEECCC----cHHHHHhcCCCCCccEEEE
Q 031271 82 YTAAWCGPCKFIEPYVKDF-AAMYTD--VQFIKIDVDW----LPEAAKAFDLIDVLPTFVL 135 (162)
Q Consensus 82 F~a~wC~~C~~~~~~l~~~-~~~~~~--v~f~~vd~d~----~~~l~~~~~i~~~~Ptiv~ 135 (162)
+|..+|+.|++..=.|+++ +...++ +.++.||... .+++.+..-. ..+|+++.
T Consensus 47 Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~Lv~ 106 (264)
T PRK11752 47 LYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPALLD 106 (264)
T ss_pred EecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEEEe
Confidence 4445699999988888774 334443 5667777642 4566666666 89999975
No 318
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=32.06 E-value=1.8e+02 Score=21.56 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=30.4
Q ss_pred EecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC--CCcHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 82 YTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV--DWLPEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 82 F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~--d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
++...|++|++..=.|... ++.|-.+++ +......+.... ..+|+++. .+|..+
T Consensus 3 y~~~~sp~~~kvr~~L~~~-----gl~~e~~~~~~~~~~~~~~~np~-g~vP~l~~-~~g~~l 58 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLK-----NIPVEKHVLLNDDEETPIRMIGA-KQVPILQK-DDGRAM 58 (209)
T ss_pred ecCCCCChHHHHHHHHHHc-----CCCeEEEECCCCcchhHHHhcCC-CCcceEEe-eCCeEe
Confidence 4567899999877666553 333333333 232233444455 78997753 466443
No 319
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=32.01 E-value=2.3e+02 Score=22.87 Aligned_cols=76 Identities=18% Similarity=0.132 Sum_probs=41.8
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC-Cc----HHHHHhcCCCCCccEEEEE----------cCCeEEEE
Q 031271 80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-WL----PEAAKAFDLIDVLPTFVLV----------KRGKEIDR 144 (162)
Q Consensus 80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d-~~----~~l~~~~~i~~~~Ptiv~~----------~~Gk~i~~ 144 (162)
+.++.+.|..-..-+....+++++. ++-++.=+-. .| .++++.++ .|++.+- ++-+.+.-
T Consensus 187 v~~~nTIC~aT~~RQ~a~~~La~~v-D~miVVGg~~SsNT~kL~~i~~~~~----~~t~~Ie~~~el~~~~l~~~~~VGi 261 (298)
T PRK01045 187 GPPKDDICYATQNRQEAVKELAPQA-DLVIVVGSKNSSNSNRLREVAEEAG----APAYLIDDASEIDPEWFKGVKTVGV 261 (298)
T ss_pred cCCCCCcchhhHHHHHHHHHHHhhC-CEEEEECCCCCccHHHHHHHHHHHC----CCEEEECChHHCcHHHhcCCCEEEE
Confidence 3447899988888888888887753 3222221221 12 23444443 3454432 33345555
Q ss_pred EcCC-CHHHHHHHHHHH
Q 031271 145 VVGA-KKDELQMKTEKR 160 (162)
Q Consensus 145 ~~g~-~~~~l~~~l~~~ 160 (162)
..|. +|+.+.+.+-..
T Consensus 262 taGASTP~~li~eV~~~ 278 (298)
T PRK01045 262 TAGASAPEWLVQEVIAR 278 (298)
T ss_pred EecCCCCHHHHHHHHHH
Confidence 6677 788776665543
No 320
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=31.73 E-value=1.5e+02 Score=20.46 Aligned_cols=56 Identities=21% Similarity=0.336 Sum_probs=38.3
Q ss_pred CCChhhhhhhHHHHHHHHh----cC--C--cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEc
Q 031271 85 AWCGPCKFIEPYVKDFAAM----YT--D--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVV 146 (162)
Q Consensus 85 ~wC~~C~~~~~~l~~~~~~----~~--~--v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~ 146 (162)
..|..|......|.++.+. +. + +.+-++.++.. ++++.+ + .-|++.+ ||+.+....
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~-~~~~~~-~--~S~~I~i--nG~piE~~l 76 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE-EFARQP-L--ESPTIRI--NGRPIEDLL 76 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH-HHhhcc-c--CCCeeeE--CCEehhHhh
Confidence 3899999887777666554 32 3 67777777765 666666 5 6677765 887774443
No 321
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=31.67 E-value=1.2e+02 Score=18.08 Aligned_cols=68 Identities=9% Similarity=-0.053 Sum_probs=37.5
Q ss_pred EEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-cHHHHHhcC-CCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHH
Q 031271 81 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-LPEAAKAFD-LIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE 158 (162)
Q Consensus 81 ~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-~~~l~~~~~-i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~ 158 (162)
.|+.+.|++|.+..=.++...-. +....++... .+++.+... . ..+|++.. +|..+. ....+...|+
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~---~~~~~~~~~~~~~~~~~~~p~~-~~vP~l~~--~~~~l~-----eS~aI~~yL~ 71 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP---YEYVEEDLGNKSELLLASNPVH-KKIPVLLH--NGKPIC-----ESLIIVEYID 71 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC---CEEEEeCcccCCHHHHHhCCCC-CCCCEEEE--CCEEee-----hHHHHHHHHH
Confidence 45678899999987666664222 4444455443 233333332 3 58998863 554331 3444555554
Q ss_pred H
Q 031271 159 K 159 (162)
Q Consensus 159 ~ 159 (162)
+
T Consensus 72 ~ 72 (74)
T cd03058 72 E 72 (74)
T ss_pred h
Confidence 4
No 322
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.39 E-value=1.3e+02 Score=23.23 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=23.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCC
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD 106 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~ 106 (162)
+-.|.-.=||.|---.+.|+++...+++
T Consensus 8 I~v~sD~vCPwC~ig~~rL~ka~~~~~~ 35 (225)
T COG2761 8 IDVFSDVVCPWCYIGKRRLEKALAEYPQ 35 (225)
T ss_pred EEEEeCCcCchhhcCHHHHHHHHHhcCc
Confidence 4445566999999999999999999986
No 323
>PRK13669 hypothetical protein; Provisional
Probab=30.27 E-value=1e+02 Score=19.66 Aligned_cols=54 Identities=7% Similarity=0.084 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271 96 YVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR 161 (162)
Q Consensus 96 ~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~ 161 (162)
.++.+ +++|++.++..+.-.. .|. -.. ....+.||+.+. +.++++|.+.|.+++
T Consensus 19 ~~~~L-e~dP~~dVie~gCls~------CG~-C~~-~~FAlVng~~V~---a~t~eeL~~kI~~~i 72 (78)
T PRK13669 19 AFEKL-EKDPNLDVLEYGCLGY------CGI-CSE-GLFALVNGEVVE---GETPEELVENIYAHL 72 (78)
T ss_pred HHHHH-HhCCCceEEEcchhhh------CcC-ccc-CceEEECCeEee---cCCHHHHHHHHHHHH
Confidence 34545 5689998887765432 333 211 122345887774 789999999888775
No 324
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.84 E-value=22 Score=26.73 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=34.3
Q ss_pred CceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc-----HHHHHhcCCCCCccEEEEEcCCeEEE
Q 031271 75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-----PEAAKAFDLIDVLPTFVLVKRGKEID 143 (162)
Q Consensus 75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~-----~~l~~~~~i~~~~Ptiv~~~~Gk~i~ 143 (162)
.||++--+|.+.|..=.+..=.|..+ ++.+.-||+-+. .++..---. ..+|++++ ||..+.
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~i-----DYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i--~g~tl~ 69 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGI-----DYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVI--DGLTLT 69 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCC-----CcceeehhhhcchhhhhhHHhhcCch-hhCCeEEE--CCEEee
Confidence 35667778888887665554333333 355555554322 122222234 78999876 776554
No 325
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=29.70 E-value=83 Score=18.95 Aligned_cols=56 Identities=25% Similarity=0.198 Sum_probs=34.9
Q ss_pred EecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC---CcHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 82 YTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD---WLPEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 82 F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d---~~~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
|+.+.|+.|.+..-.++...- .+.+..+|.. ..+++.+..-. ..+|++.. .+|..+
T Consensus 4 y~~~~~~~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~-~~g~~l 62 (75)
T cd03044 4 YTYPGNPRSLKILAAAKYNGL---DVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEG-ADGFCL 62 (75)
T ss_pred ecCCCCccHHHHHHHHHHcCC---ceEEEecccccccCCHHHHHhCCC-CCCCEEEc-CCCCEE
Confidence 566778888887666664321 2555566654 34566666667 89999864 346444
No 326
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=29.59 E-value=1.3e+02 Score=24.09 Aligned_cols=78 Identities=14% Similarity=0.048 Sum_probs=43.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC-----C-CcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCCCHH
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV-----D-WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGAKKD 151 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~-----d-~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~~~~ 151 (162)
.|..|++-|..=..+.|..++. +=-.|+.|=. + .+..+...|....++|.+..+ .+.+.+.+ ...+.+
T Consensus 78 ~IR~Y~sDCn~le~v~pAa~~~----g~kv~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~VGnEal~r-~~~tas 152 (305)
T COG5309 78 SIRTYGSDCNTLENVLPAAEAS----GFKVFLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVTVGNEALNR-NDLTAS 152 (305)
T ss_pred eEEEeeccchhhhhhHHHHHhc----CceEEEEEeeccchhhhHHHHHHHHHhccCCCCceEEEEechhhhhc-CCCCHH
Confidence 6888887666554444444433 2133333311 1 122556667654678877666 45555543 223788
Q ss_pred HHHHHHHHHh
Q 031271 152 ELQMKTEKRR 161 (162)
Q Consensus 152 ~l~~~l~~~~ 161 (162)
+|.+.|...+
T Consensus 153 ql~~~I~~vr 162 (305)
T COG5309 153 QLIEYIDDVR 162 (305)
T ss_pred HHHHHHHHHH
Confidence 8888877543
No 327
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=29.22 E-value=2.2e+02 Score=22.77 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=42.7
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC-Cc----HHHHHhcCCCCCccEEEE----------EcCCeEEEE
Q 031271 80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-WL----PEAAKAFDLIDVLPTFVL----------VKRGKEIDR 144 (162)
Q Consensus 80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d-~~----~~l~~~~~i~~~~Ptiv~----------~~~Gk~i~~ 144 (162)
+.++.+.|..-..-+....++++.. |+-++.=+-. .| .++++.. +.|++.+ |++.+.+.-
T Consensus 185 ~~~~nTIC~AT~~RQ~a~~~la~~v-D~miVVGg~nSsNT~rL~ei~~~~----~~~t~~Ie~~~el~~~~l~~~~~VGi 259 (280)
T TIGR00216 185 VPVFNTICYATQNRQDAVKELAPEV-DLMIVIGGKNSSNTTRLYEIAEEH----GPPSYLIETAEELPEEWLKGVKVVGI 259 (280)
T ss_pred CCCCCCcccccHHHHHHHHHHHhhC-CEEEEECCCCCchHHHHHHHHHHh----CCCEEEECChHHCCHHHhCCCCEEEE
Confidence 3456889988888888888887753 3222211211 11 1234433 3455554 233345666
Q ss_pred EcCC-CHHHHHHHHHHH
Q 031271 145 VVGA-KKDELQMKTEKR 160 (162)
Q Consensus 145 ~~g~-~~~~l~~~l~~~ 160 (162)
..|. +|+.+.+.+-+.
T Consensus 260 TAGASTP~~li~eVi~~ 276 (280)
T TIGR00216 260 TAGASTPDWIIEEVIRK 276 (280)
T ss_pred EecCCCCHHHHHHHHHH
Confidence 6677 788877666544
No 328
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=28.82 E-value=2.7e+02 Score=21.42 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=41.1
Q ss_pred CCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHH-HhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHH
Q 031271 85 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA-KAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR 160 (162)
Q Consensus 85 ~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~-~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~ 160 (162)
-.|+.|+++.-.|. .+..-+.+-.||+..-|+.. ..... ...|.+.+ ||+.+ .+.+.++.+|++.
T Consensus 19 Gdcpf~qr~~m~L~---~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l~~--d~~~~-----tDs~~Ie~~Lee~ 84 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLE---LKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVLKF--DEKWV-----TDSDKIEEFLEEK 84 (221)
T ss_pred CCChhHHHHHHHHH---HcCCCceEEEeecCCCcHHHHhhCCC-CCCCeEEe--CCcee-----ccHHHHHHHHHHh
Confidence 36788887765555 33335888889998777655 55566 77777655 44322 2456666666654
No 329
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=27.05 E-value=1.7e+02 Score=22.58 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=21.5
Q ss_pred hhhhhhHHHHHHHHhcCCcEEEEEEC
Q 031271 89 PCKFIEPYVKDFAAMYTDVQFIKIDV 114 (162)
Q Consensus 89 ~C~~~~~~l~~~~~~~~~v~f~~vd~ 114 (162)
..-.+.+.+.+++++||+..|+.+|.
T Consensus 64 ~g~~~~~~~~~vA~~~p~~~F~~~d~ 89 (258)
T cd06353 64 TSFGFMDAALKVAKEYPDVKFEHCSG 89 (258)
T ss_pred CchhhhHHHHHHHHHCCCCEEEECCC
Confidence 44567788899999999999998875
No 330
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=26.88 E-value=1.5e+02 Score=17.72 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=35.2
Q ss_pred EEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC----cHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 81 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW----LPEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 81 ~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~----~~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
.|+.+.|++|+++.-.++...-. +....++... .+++.+.... ..+|++.. +|..+
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~~---~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~--~~~~l 62 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKIP---FEECPIDLRKGEQLTPEFKKINPF-GKVPAIVD--GDFTL 62 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCCC---cEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEE--CCEEE
Confidence 46778889998876666654322 4555555432 2456666667 89998863 56443
No 331
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=26.14 E-value=1.3e+02 Score=19.09 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=34.8
Q ss_pred hHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271 94 EPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR 161 (162)
Q Consensus 94 ~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~ 161 (162)
...++++. +.|++.++..+.-. ..|. -....|. +.||+.+. +.++++|.+.|.+++
T Consensus 17 ~~~~~~Le-~~p~~~Vie~gCl~------~Cg~-C~~~pFA-lVnG~~V~---A~t~eeL~~kI~~~i 72 (78)
T PF07293_consen 17 DQVYEKLE-KDPDIDVIEYGCLS------YCGP-CAKKPFA-LVNGEIVA---AETAEELLEKIKEKI 72 (78)
T ss_pred HHHHHHHh-cCCCccEEEcChhh------hCcC-CCCCccE-EECCEEEe---cCCHHHHHHHHHHHH
Confidence 34456664 46888887766543 2333 3322222 35887774 779999999888765
No 332
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=25.92 E-value=1.5e+02 Score=17.60 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=36.4
Q ss_pred CChhhhhhhHHHHHHHHhcCCcEEEEEEC-----CCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHH
Q 031271 86 WCGPCKFIEPYVKDFAAMYTDVQFIKIDV-----DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE 158 (162)
Q Consensus 86 wC~~C~~~~~~l~~~~~~~~~v~f~~vd~-----d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~ 158 (162)
+||.|++..=.++...-.+ .+.+ ++. ...+.+.+.-.- ..+|+++. .+|+.+. +...+...|+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~-~~~~--v~~~~~~~~~~~~~~~~~p~-~~VP~L~~-~~g~vi~-----eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPY-EIKV--VPLIPKGEQKPPEFLALNPR-GKVPVLVD-PDGTVIN-----ESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTC-EEEE--EETTTTBCTTCHBHHHHSTT--SSSEEEE-TTTEEEE-----SHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCC-EEEE--EeeecCccccChhhhccCcC-eEEEEEEE-CCCCEee-----CHHHHHHHHh
Confidence 5899999877776653322 1333 322 223567777777 89999876 5777442 3444555554
No 333
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=25.53 E-value=1.9e+02 Score=19.84 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=21.0
Q ss_pred HHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHH
Q 031271 121 AKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEK 159 (162)
Q Consensus 121 ~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~ 159 (162)
+..||| +.+|.++|- ++-+ .-|. +...-...+++
T Consensus 77 Aw~lGi-~k~PAVV~D--~~~V--VYG~~DV~~A~~~~~~ 111 (113)
T TIGR03757 77 AWQLGV-TKIPAVVVD--RRYV--VYGETDVARALALIQQ 111 (113)
T ss_pred HHHcCC-ccCCEEEEc--CCeE--EecCccHHHHHHHHHh
Confidence 557899 999999883 4333 2255 55544444443
No 334
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=25.25 E-value=1.2e+02 Score=24.92 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=17.3
Q ss_pred HhcCCCCCc--cEEEEEcCCeEEEEEcC
Q 031271 122 KAFDLIDVL--PTFVLVKRGKEIDRVVG 147 (162)
Q Consensus 122 ~~~~i~~~~--Ptiv~~~~Gk~i~~~~g 147 (162)
..+|+ .+- -..++|++|+.+.+..+
T Consensus 308 ADiGI-aggg~g~~~lF~~G~~~~kv~~ 334 (346)
T TIGR00612 308 ADIGI-SGGGTGSAILFKRGKPKAKQPE 334 (346)
T ss_pred cCeee-ecCCCCceEEEECCEEeEecCH
Confidence 46777 433 36788999999876543
No 335
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=25.18 E-value=3.2e+02 Score=21.04 Aligned_cols=52 Identities=6% Similarity=-0.121 Sum_probs=34.5
Q ss_pred CCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc-HHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 85 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-PEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 85 ~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~-~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
.-|++|++..=.+... --.+.+..+|.... +++.+..-. ..+|+++- +|..+
T Consensus 17 ~~cp~~~rv~i~L~ek---gi~~e~~~vd~~~~~~~fl~inP~-g~vPvL~~--~g~~l 69 (236)
T TIGR00862 17 GNCPFSQRLFMILWLK---GVVFNVTTVDLKRKPEDLQNLAPG-THPPFLTY--NTEVK 69 (236)
T ss_pred CCCHhHHHHHHHHHHc---CCCcEEEEECCCCCCHHHHHHCcC-CCCCEEEE--CCEEe
Confidence 6789999987666541 11367777777654 566666666 88998863 56544
No 336
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=25.02 E-value=55 Score=19.77 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=12.0
Q ss_pred CccEEEEEcCCeEEE
Q 031271 129 VLPTFVLVKRGKEID 143 (162)
Q Consensus 129 ~~Ptiv~~~~Gk~i~ 143 (162)
-.|++.+|+||+.+.
T Consensus 11 P~P~v~W~kdg~~l~ 25 (67)
T cd05863 11 PPPEFQWYKDGKLIS 25 (67)
T ss_pred CCCEEEEEECCEECc
Confidence 346899999998885
No 337
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=24.05 E-value=75 Score=25.37 Aligned_cols=75 Identities=17% Similarity=0.105 Sum_probs=39.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc-------HHHHHhcCCCCCccEEEE----------EcCCeE
Q 031271 79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-------PEAAKAFDLIDVLPTFVL----------VKRGKE 141 (162)
Q Consensus 79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~-------~~l~~~~~i~~~~Ptiv~----------~~~Gk~ 141 (162)
...|+.++|..-..-+....++++.. .++.|=.+.+ .++++.++ .|++.+ +++.+.
T Consensus 185 ~~~~~nTIC~aT~~RQ~a~~~La~~v---D~miVIGg~~SsNT~kL~eia~~~~----~~t~~Ie~~~el~~~~l~~~~~ 257 (281)
T PF02401_consen 185 EGPVFNTICYATQNRQEAARELAKEV---DAMIVIGGKNSSNTRKLAEIAKEHG----KPTYHIETADELDPEWLKGVKK 257 (281)
T ss_dssp E-SCC-S--CHHHHHHHHHHHHHCCS---SEEEEES-TT-HHHHHHHHHHHHCT----TCEEEESSGGG--HHHHTT-SE
T ss_pred cCCCCCCCCHhHHHHHHHHHHHHhhC---CEEEEecCCCCccHHHHHHHHHHhC----CCEEEeCCccccCHhHhCCCCE
Confidence 33488999998888888888887643 3333322221 23455544 345444 234456
Q ss_pred EEEEcCC-CHHHHHHHHHHH
Q 031271 142 IDRVVGA-KKDELQMKTEKR 160 (162)
Q Consensus 142 i~~~~g~-~~~~l~~~l~~~ 160 (162)
+.-..|. +|+.+.+.+.+.
T Consensus 258 VGItaGASTP~~ii~eVi~~ 277 (281)
T PF02401_consen 258 VGITAGASTPDWIIEEVIDR 277 (281)
T ss_dssp EEEEE-TTS-HHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHH
Confidence 6666787 788877766554
No 338
>PRK15113 glutathione S-transferase; Provisional
Probab=24.05 E-value=1.9e+02 Score=21.28 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=35.8
Q ss_pred EEEEecC--CChhhhhhhHHHHHHHHhcCCcEEEEEECCC----cHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 79 VIYYTAA--WCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW----LPEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 79 vv~F~a~--wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~----~~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
+..|+.+ .|++|++..=.+.+..- .+.+..+|... .+++.+..-. ..+|+++. +|..+
T Consensus 6 ~~Ly~~~~~~s~~~~rv~~~l~e~gi---~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L~~--~~~~l 69 (214)
T PRK15113 6 ITLYSDAHFFSPYVMSAFVALQEKGL---PFELKTVDLDAGEHLQPTYQGYSLT-RRVPTLQH--DDFEL 69 (214)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCccccCHHHHhcCCC-CCCCEEEE--CCEEE
Confidence 4455544 59999887666655422 25556666532 3566665566 89999863 56544
No 339
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=23.64 E-value=1.7e+02 Score=21.55 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEEEcCCeEEEEEcCC-CHHHHHHHHHHH
Q 031271 132 TFVLVKRGKEIDRVVGA-KKDELQMKTEKR 160 (162)
Q Consensus 132 tiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~ 160 (162)
++++|..|+++ ..|. +.+++...+++.
T Consensus 140 ~~lIF~SGKvv--itGaks~~~~~~a~~~i 167 (174)
T cd04518 140 VLLLFSSGKMV--ITGAKSEEDAKRAVEKL 167 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHH
Confidence 56777889887 4576 788888777765
No 340
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=23.53 E-value=4.5e+02 Score=22.20 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=37.6
Q ss_pred CcEEEEEECCCcHH-------------HHHhcCCCCCccEEEEEcCC---eEEEEEcCCCHHHHHHHHHHHh
Q 031271 106 DVQFIKIDVDWLPE-------------AAKAFDLIDVLPTFVLVKRG---KEIDRVVGAKKDELQMKTEKRR 161 (162)
Q Consensus 106 ~v~f~~vd~d~~~~-------------l~~~~~i~~~~Ptiv~~~~G---k~i~~~~g~~~~~l~~~l~~~~ 161 (162)
++.++.+|-+..|+ +...|.-....|.+++-++| +..-++.|.++.++.+.+.+..
T Consensus 376 ~~~~~~~d~~~~p~~~~~~e~~t~~w~~~~a~~~~~~~pdvi~d~g~~g~Ep~i~v~g~~~~~v~~~~~~l~ 447 (448)
T PRK08573 376 GYTVAYIDRREEPEEVKAREGASIPWIIEEAYKQTGRRPDIIYDLGDWGKEPMIRILGRTPVEVVEKLLRLI 447 (448)
T ss_pred CCeEEEEcCCCCchhhhhccccchhHHHHHHHHhcCCCCeEEEECCCCCcCcEEEEECCCHHHHHHHHHHHh
Confidence 46777777766553 23334211588987776554 4577888999999988887764
No 341
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=23.50 E-value=1.6e+02 Score=24.12 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHhcCCcEEEEEEC
Q 031271 92 FIEPYVKDFAAMYTDVQFIKIDV 114 (162)
Q Consensus 92 ~~~~~l~~~~~~~~~v~f~~vd~ 114 (162)
.+...+++++.+||++.|+.+|.
T Consensus 107 ~~~d~~~~va~~~Pd~~F~iid~ 129 (345)
T COG1744 107 AFSDALEKVAAEYPDVKFVIIDG 129 (345)
T ss_pred chhhHHHHHHHHCCCCEEEEecC
Confidence 45678899999999999999987
No 342
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=22.61 E-value=30 Score=28.48 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=47.8
Q ss_pred ccCCCCCCCCcccCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEE-e
Q 031271 5 VSSLENPHGFIHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYY-T 83 (162)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F-~ 83 (162)
.+++...+++++.=.+..--|+. ++|-+.++....+.... .+.. =
T Consensus 48 pPs~~aGCGGID~f~GsFSfIn~-dqlVq~lr~Ia~nA~gy---------------------------------AF~LAL 93 (361)
T PF06122_consen 48 PPSISAGCGGIDLFMGSFSFINS-DQLVQMLRNIASNAPGY---------------------------------AFQLAL 93 (361)
T ss_pred CCcccCCCCceeccccccccCCH-HHHHHHHHHHHHhhHHH---------------------------------HHHHHH
Confidence 35677788999987777777765 78888877765444333 1111 1
Q ss_pred cCCChhhhhhhHHHHHHHHhcC
Q 031271 84 AAWCGPCKFIEPYVKDFAAMYT 105 (162)
Q Consensus 84 a~wC~~C~~~~~~l~~~~~~~~ 105 (162)
..|||.|......|+++...+-
T Consensus 94 ~t~~p~~~~~~~~lq~~~~~lN 115 (361)
T PF06122_consen 94 QTLCPQCGNIMDKLQKIAQALN 115 (361)
T ss_pred HHhCHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999988663
No 343
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=22.36 E-value=1.8e+02 Score=21.35 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 132 TFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 132 tiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
|+.+|..|+++ +.|. +++++.+.++..+
T Consensus 141 t~lIF~sGkvv--itGaks~~~~~~a~~~i~ 169 (174)
T cd00652 141 VLLIFVSGKIV--ITGAKSREDIYEAVEKIY 169 (174)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHHH
Confidence 45677888877 4577 7888888777643
No 344
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=22.34 E-value=1.9e+02 Score=17.36 Aligned_cols=32 Identities=13% Similarity=0.347 Sum_probs=19.2
Q ss_pred EEEEe--cCCChhhhhhhH-HHHHHHHhcCCcEEE
Q 031271 79 VIYYT--AAWCGPCKFIEP-YVKDFAAMYTDVQFI 110 (162)
Q Consensus 79 vv~F~--a~wC~~C~~~~~-~l~~~~~~~~~v~f~ 110 (162)
+++|. +..|++....+- .++++...|++..++
T Consensus 17 ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i 51 (58)
T PF06858_consen 17 ILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVI 51 (58)
T ss_dssp EEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EE
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 55555 448888776654 448888888774444
No 345
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=21.48 E-value=1.4e+02 Score=17.60 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=29.7
Q ss_pred EecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc--HHHHHhcCCCCCccEEEEEcCCeEE
Q 031271 82 YTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL--PEAAKAFDLIDVLPTFVLVKRGKEI 142 (162)
Q Consensus 82 F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~--~~l~~~~~i~~~~Ptiv~~~~Gk~i 142 (162)
++.+.|+.|...+=.++...-. +....++.... .++...... ..+|+++. +|..+
T Consensus 4 y~~~~~~~~~~v~~~l~~~gi~---~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~--~~~~l 60 (72)
T cd03039 4 TYFNIRGRGEPIRLLLADAGVE---YEDVRITYEEWPELDLKPTLPF-GQLPVLEI--DGKKL 60 (72)
T ss_pred EEEcCcchHHHHHHHHHHCCCC---cEEEEeCHHHhhhhhhccCCcC-CCCCEEEE--CCEEE
Confidence 3446778888777666654322 34444444321 223333445 78998853 55444
No 346
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=21.04 E-value=61 Score=20.38 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=11.5
Q ss_pred ccEEEEEcCCeEEE
Q 031271 130 LPTFVLVKRGKEID 143 (162)
Q Consensus 130 ~Ptiv~~~~Gk~i~ 143 (162)
.|++-+|+||+.+.
T Consensus 12 ~Pti~W~kng~~l~ 25 (79)
T cd05855 12 KPTLQWFHEGAILN 25 (79)
T ss_pred CCceEEEECCEECC
Confidence 46899999998774
No 347
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=20.92 E-value=1.7e+02 Score=21.85 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=21.1
Q ss_pred EEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271 132 TFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 161 (162)
Q Consensus 132 tiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~ 161 (162)
++++|+.||.+ ..|. +.+++...+++.+
T Consensus 55 a~LIF~SGK~V--cTGaKs~ed~~~av~~~~ 83 (185)
T COG2101 55 AALIFRSGKVV--CTGAKSVEDVHRAVKKLA 83 (185)
T ss_pred eEEEEecCcEE--EeccCcHHHHHHHHHHHH
Confidence 67888999988 4577 7887777776653
No 348
>PRK00394 transcription factor; Reviewed
Probab=20.83 E-value=2.1e+02 Score=21.18 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=19.8
Q ss_pred EEEEEcCCeEEEEEcCC-CHHHHHHHHHHH
Q 031271 132 TFVLVKRGKEIDRVVGA-KKDELQMKTEKR 160 (162)
Q Consensus 132 tiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~ 160 (162)
++++|..|+++ ..|. +.+++...+++.
T Consensus 141 ~~lIF~SGKvv--itGaks~~~~~~a~~~i 168 (179)
T PRK00394 141 VVLLFGSGKLV--ITGAKSEEDAEKAVEKI 168 (179)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHH
Confidence 56777888887 4577 788777777654
No 349
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=20.63 E-value=1.2e+02 Score=22.67 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=21.2
Q ss_pred CChhhhhhhHHHHHHHHhcCCcEEEEEECCCc
Q 031271 86 WCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL 117 (162)
Q Consensus 86 wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~ 117 (162)
-|+.|..+ |.++++..|++.++.+|-...
T Consensus 156 PCGaC~ew---L~KIAe~np~f~v~mFd~t~c 184 (193)
T PF14421_consen 156 PCGACKEW---LRKIAEANPDFRVYMFDDTRC 184 (193)
T ss_pred cchHHHHH---HHHHHHhCCCeEEEEecCCCc
Confidence 47778765 777877778888888776543
No 350
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=20.42 E-value=2.2e+02 Score=17.46 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=35.9
Q ss_pred CCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEc---CC-CHHHHHHHHHH
Q 031271 85 AWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVV---GA-KKDELQMKTEK 159 (162)
Q Consensus 85 ~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~---g~-~~~~l~~~l~~ 159 (162)
..|.+-.+....-+.+...||+ +.-+.... ...-+|-++-||+.+..-. ++ ++++|.+.|++
T Consensus 9 ~~C~~~~~a~~l~~~l~~~fp~~~~~v~~~~-------------~~~G~FEV~v~g~lI~SK~~~g~fP~~~~i~~~I~~ 75 (76)
T PF10262_consen 9 TSCGYRPRALELAQELLQTFPDRIAEVELSP-------------GSTGAFEVTVNGELIFSKLESGRFPDPDEIVQLIRD 75 (76)
T ss_dssp TTTTCHHHHHHHHHHHHHHSTTTCSEEEEEE-------------ESTT-EEEEETTEEEEEHHHHTSSS-HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcceEEEEEe-------------ccCCEEEEEEccEEEEEehhcCCCCCHHHHHHHHhc
Confidence 3444444555455777778888 21222211 1222567777888887432 45 89999998886
Q ss_pred H
Q 031271 160 R 160 (162)
Q Consensus 160 ~ 160 (162)
+
T Consensus 76 ~ 76 (76)
T PF10262_consen 76 H 76 (76)
T ss_dssp H
T ss_pred C
Confidence 4
Done!