Query 031272
Match_columns 162
No_of_seqs 167 out of 455
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 18:47:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031272.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031272hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 92.6 0.19 6.6E-06 33.5 4.7 32 57-88 43-75 (76)
2 1wj2_A Probable WRKY transcrip 92.1 0.23 7.7E-06 33.3 4.6 31 57-87 46-77 (78)
3 2rpr_A Flywch-type zinc finger 81.3 0.87 3E-05 30.3 2.4 24 57-86 50-73 (87)
4 2v66_B Nuclear distribution pr 63.4 36 0.0012 23.9 7.5 59 101-159 3-68 (111)
5 1p9i_A Cortexillin I/GCN4 hybr 49.5 19 0.00065 19.1 2.9 28 122-149 2-29 (31)
6 4aj5_A SKA1, spindle and kinet 48.5 23 0.00079 24.1 4.0 36 114-149 56-91 (91)
7 2v71_A Nuclear distribution pr 47.1 85 0.0029 24.0 7.5 35 125-159 87-121 (189)
8 1deq_A Fibrinogen (alpha chain 44.6 66 0.0023 27.3 7.1 29 127-155 114-142 (390)
9 3mq9_A Bone marrow stromal ant 41.8 58 0.002 27.2 6.5 34 125-158 428-461 (471)
10 3iv1_A Tumor susceptibility ge 38.8 82 0.0028 20.7 7.4 53 103-155 20-75 (78)
11 2ayu_A Nucleosome assembly pro 33.8 10 0.00035 32.6 0.4 40 119-158 69-108 (417)
12 3sjb_C Golgi to ER traffic pro 30.1 41 0.0014 22.9 2.9 34 101-134 56-89 (93)
13 3tj5_B Metavinculin, SCA-famil 27.2 51 0.0018 17.2 2.3 16 135-150 10-25 (27)
14 1wi9_A Protein C20ORF116 homol 27.0 74 0.0025 20.6 3.6 33 124-156 9-49 (72)
15 1x79_B RAB GTPase binding effe 26.5 1.3E+02 0.0046 21.0 5.2 59 101-159 45-103 (112)
16 1a93_B MAX protein, coiled coi 25.9 91 0.0031 17.3 3.5 25 100-124 6-30 (34)
17 2f9i_A Acetyl-coenzyme A carbo 24.2 29 0.00098 28.6 1.5 33 81-117 3-35 (327)
18 3qfl_A MLA10; coiled-coil, (CC 23.9 1.7E+02 0.0059 19.7 6.6 28 122-149 36-78 (115)
19 2jq3_A Apolipoprotein C-III; A 23.6 32 0.0011 22.6 1.3 28 126-153 7-34 (79)
20 2qfa_B Borealin; three-helical 23.2 1.4E+02 0.0049 18.6 4.6 23 122-144 5-27 (62)
21 2wuj_A Septum site-determining 23.1 1.1E+02 0.0038 18.4 3.8 33 122-154 23-55 (57)
22 4ani_A Protein GRPE; chaperone 22.5 2.6E+02 0.0089 21.5 6.7 41 103-143 61-101 (213)
23 3o0z_A RHO-associated protein 22.1 2.5E+02 0.0085 21.0 6.9 37 123-159 87-123 (168)
24 2jqq_A Conserved oligomeric go 20.9 1.3E+02 0.0043 23.3 4.4 23 135-157 71-93 (204)
25 1gk7_A Vimentin; intermediate 20.9 91 0.0031 17.6 2.8 21 138-158 11-31 (39)
26 3ghg_A Fibrinogen alpha chain; 20.5 2.2E+02 0.0075 25.3 6.4 29 130-158 114-142 (562)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=92.65 E-value=0.19 Score=33.47 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=27.1
Q ss_pred cCCceEEEEEEe-eCCcEEEEEEeecCCcCccc
Q 031272 57 EGCKATILVKME-KSGKWVVTRFIKDHNHPLVV 88 (162)
Q Consensus 57 ~gC~A~i~v~~~-~~gkW~V~~f~~eHNH~L~~ 88 (162)
.||+|+=.|.+. +++.-+++-..-+|||++.+
T Consensus 43 ~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 43 PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 499999999876 46788899999999999843
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=92.13 E-value=0.23 Score=33.30 Aligned_cols=31 Identities=35% Similarity=0.454 Sum_probs=26.6
Q ss_pred cCCceEEEEEEe-eCCcEEEEEEeecCCcCcc
Q 031272 57 EGCKATILVKME-KSGKWVVTRFIKDHNHPLV 87 (162)
Q Consensus 57 ~gC~A~i~v~~~-~~gkW~V~~f~~eHNH~L~ 87 (162)
.||+|+=.|.+. .|+.-+++-..-+||||+.
T Consensus 46 ~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 46 PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 599999999886 4677888899999999974
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=81.31 E-value=0.87 Score=30.29 Aligned_cols=24 Identities=17% Similarity=0.477 Sum_probs=16.8
Q ss_pred cCCceEEEEEEeeCCcEEEEEEeecCCcCc
Q 031272 57 EGCKATILVKMEKSGKWVVTRFIKDHNHPL 86 (162)
Q Consensus 57 ~gC~A~i~v~~~~~gkW~V~~f~~eHNH~L 86 (162)
.+|+|++..... + |. ...+||||.
T Consensus 50 ~kCrARi~T~~~--~---~~-~~~~HnH~p 73 (87)
T 2rpr_A 50 LGCRSRAITQGH--R---IM-VMRSHCHQP 73 (87)
T ss_dssp SCCCCEEEEETT--E---EE-ECSCCSSCC
T ss_pred CCCCEEEEEcCC--C---EE-CCCCcCCCC
Confidence 389999887642 2 22 567899974
No 4
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=63.43 E-value=36 Score=23.91 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=36.3
Q ss_pred cchhHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHhchhhhhhhHHHHHHHHHHHHhhhhhc
Q 031272 101 KKIEELTLELERQEQLCAAYREKL-------FNFMNNVEEQTEELSSKIQVIVDNIRKVESEMLKS 159 (162)
Q Consensus 101 rkI~el~~el~~~~q~~~~y~~~L-------~~~l~~meeh~~~ls~kvq~iv~~~k~~e~~~~~~ 159 (162)
+++++|.....+...=.+.|+..+ .+-.+.++.....|...-+....++|+||..+-++
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 344555554444443333343333 34456677777888888888888888888776554
No 5
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=49.52 E-value=19 Score=19.11 Aligned_cols=28 Identities=14% Similarity=0.480 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhchhhhhhhHHHHHHHH
Q 031272 122 EKLFNFMNNVEEQTEELSSKIQVIVDNI 149 (162)
Q Consensus 122 ~~L~~~l~~meeh~~~ls~kvq~iv~~~ 149 (162)
++|..++..+|-.+.+|-.||+.++-.+
T Consensus 2 dqlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777788888888888888776544
No 6
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=48.54 E-value=23 Score=24.06 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=20.2
Q ss_pred HHHhHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHH
Q 031272 114 EQLCAAYREKLFNFMNNVEEQTEELSSKIQVIVDNI 149 (162)
Q Consensus 114 ~q~~~~y~~~L~~~l~~meeh~~~ls~kvq~iv~~~ 149 (162)
...|-.|++++..-|+.+++-.++=-.+|+++.+|+
T Consensus 56 ~E~eV~~Qe~~~~sLKEL~~s~e~d~kdv~HLkeni 91 (91)
T 4aj5_A 56 LELEIQYQEQTNNSLKELCESLEEDYKDIEHLKENV 91 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346778888888888888887777777777776653
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=47.10 E-value=85 Score=23.95 Aligned_cols=35 Identities=9% Similarity=0.150 Sum_probs=27.3
Q ss_pred HHHHHHHHhchhhhhhhHHHHHHHHHHHHhhhhhc
Q 031272 125 FNFMNNVEEQTEELSSKIQVIVDNIRKVESEMLKS 159 (162)
Q Consensus 125 ~~~l~~meeh~~~ls~kvq~iv~~~k~~e~~~~~~ 159 (162)
....+.++.....|....+....++++||..+-++
T Consensus 87 ~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdl 121 (189)
T 2v71_A 87 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34467778888888888999999999999876543
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=44.63 E-value=66 Score=27.34 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=20.1
Q ss_pred HHHHHHhchhhhhhhHHHHHHHHHHHHhh
Q 031272 127 FMNNVEEQTEELSSKIQVIVDNIRKVESE 155 (162)
Q Consensus 127 ~l~~meeh~~~ls~kvq~iv~~~k~~e~~ 155 (162)
+..+||.|...|-.+|.+.|-+|+-|+.-
T Consensus 114 ~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 114 INEDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34567777777777777777777776654
No 9
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=41.78 E-value=58 Score=27.23 Aligned_cols=34 Identities=9% Similarity=0.290 Sum_probs=17.7
Q ss_pred HHHHHHHHhchhhhhhhHHHHHHHHHHHHhhhhh
Q 031272 125 FNFMNNVEEQTEELSSKIQVIVDNIRKVESEMLK 158 (162)
Q Consensus 125 ~~~l~~meeh~~~ls~kvq~iv~~~k~~e~~~~~ 158 (162)
..+...++.-+..--++||..-.-+++++.+-++
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 428 MALMASLDAEKAQGQKKVEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445666666666666555444
No 10
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=38.83 E-value=82 Score=20.69 Aligned_cols=53 Identities=13% Similarity=0.247 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHH---HhHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHhh
Q 031272 103 IEELTLELERQEQ---LCAAYREKLFNFMNNVEEQTEELSSKIQVIVDNIRKVESE 155 (162)
Q Consensus 103 I~el~~el~~~~q---~~~~y~~~L~~~l~~meeh~~~ls~kvq~iv~~~k~~e~~ 155 (162)
+...++||+..++ =...-+..|.-+++.|+.....+.+.|+..-+...+|+.-
T Consensus 20 ~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 20 MDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667776665 3334556888899999999999999999888888888754
No 11
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=33.82 E-value=10 Score=32.62 Aligned_cols=40 Identities=10% Similarity=0.255 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHhhhhh
Q 031272 119 AYREKLFNFMNNVEEQTEELSSKIQVIVDNIRKVESEMLK 158 (162)
Q Consensus 119 ~y~~~L~~~l~~meeh~~~ls~kvq~iv~~~k~~e~~~~~ 158 (162)
+-++.|.++.....+....|+..|+..|..|+.|+.+-..
T Consensus 69 ~~~~~l~~l~~~~~~~i~sLp~~v~~rI~aLk~lQ~e~~~ 108 (417)
T 2ayu_A 69 SIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFE 108 (417)
T ss_dssp -CCSTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccchhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555667788999999999999988776543
No 12
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=30.06 E-value=41 Score=22.94 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=16.8
Q ss_pred cchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 031272 101 KKIEELTLELERQEQLCAAYREKLFNFMNNVEEQ 134 (162)
Q Consensus 101 rkI~el~~el~~~~q~~~~y~~~L~~~l~~meeh 134 (162)
|+++.+..||+..++..++-+......|..+|.|
T Consensus 56 Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~~~~ 89 (93)
T 3sjb_C 56 RKLDSLDKEINNLKDEIQSENKAFQAHLHKLEHH 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666666666666666665555555555555543
No 13
>3tj5_B Metavinculin, SCA-family protein; cytoskeleton, epidemic typhus, spotted fever, alpha-HE bundle domain, protein-protein interactions; 1.99A {Rickettsia rickettsii}
Probab=27.19 E-value=51 Score=17.24 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=13.1
Q ss_pred hhhhhhhHHHHHHHHH
Q 031272 135 TEELSSKIQVIVDNIR 150 (162)
Q Consensus 135 ~~~ls~kvq~iv~~~k 150 (162)
...||.-+||+++++.
T Consensus 10 A~~LS~sMQdLLn~vN 25 (27)
T 3tj5_B 10 ATALSGSMQYLLNYVN 25 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4578999999999875
No 14
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=27.00 E-value=74 Score=20.59 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=24.2
Q ss_pred HHHHHHHHHhc--------hhhhhhhHHHHHHHHHHHHhhh
Q 031272 124 LFNFMNNVEEQ--------TEELSSKIQVIVDNIRKVESEM 156 (162)
Q Consensus 124 L~~~l~~meeh--------~~~ls~kvq~iv~~~k~~e~~~ 156 (162)
|..|.++|..+ ..+...+.|++++-+++||.+.
T Consensus 9 l~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g 49 (72)
T 1wi9_A 9 LTEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEG 49 (72)
T ss_dssp HHHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCC
Confidence 44555666443 4566788999999999999875
No 15
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=26.45 E-value=1.3e+02 Score=20.96 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=28.9
Q ss_pred cchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHhhhhhc
Q 031272 101 KKIEELTLELERQEQLCAAYREKLFNFMNNVEEQTEELSSKIQVIVDNIRKVESEMLKS 159 (162)
Q Consensus 101 rkI~el~~el~~~~q~~~~y~~~L~~~l~~meeh~~~ls~kvq~iv~~~k~~e~~~~~~ 159 (162)
.++.+|+..+...-+....-+.....+-+.+.++...|+..=+.+-..|..|+.++..+
T Consensus 45 ~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L 103 (112)
T 1x79_B 45 HQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSL 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 34555555555544444444444455556777777777777777777777777666544
No 16
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=25.93 E-value=91 Score=17.26 Aligned_cols=25 Identities=8% Similarity=0.190 Sum_probs=19.2
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHH
Q 031272 100 DKKIEELTLELERQEQLCAAYREKL 124 (162)
Q Consensus 100 ~rkI~el~~el~~~~q~~~~y~~~L 124 (162)
++|+...+++|+..++..+.-.+++
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHH
Confidence 5788889998888887777665554
No 17
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=24.17 E-value=29 Score=28.59 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=15.8
Q ss_pred cCCcCcccCCCcCcccCccccchhHHHHHHHHHHHHh
Q 031272 81 DHNHPLVVTANGYSTVGDKDKKIEELTLELERQEQLC 117 (162)
Q Consensus 81 eHNH~L~~~~~~~~~~~s~~rkI~el~~el~~~~q~~ 117 (162)
.|.|-|+|.+. ++.. .+.|.||...|+..+...
T Consensus 3 ~~~~~~~~~~~--~~~f--e~~~~~~~~~~~~~~~~~ 35 (327)
T 2f9i_A 3 HHHHHLVPRGS--MLDF--EKPLFEIRNKIESLKESQ 35 (327)
T ss_dssp -----CBCSSC--CCGG--GHHHHHHHHHHHCC----
T ss_pred ccccccCCCCC--CCch--hhHHHHHHHHHHHHHHhh
Confidence 47788888654 3322 367888888877655544
No 18
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=23.93 E-value=1.7e+02 Score=19.74 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHh---------------chhhhhhhHHHHHHHH
Q 031272 122 EKLFNFMNNVEE---------------QTEELSSKIQVIVDNI 149 (162)
Q Consensus 122 ~~L~~~l~~mee---------------h~~~ls~kvq~iv~~~ 149 (162)
+.+.+||.+.++ +...++.+++|++|.+
T Consensus 36 ~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f 78 (115)
T 3qfl_A 36 ESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKF 78 (115)
T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666644 3466788999998765
No 19
>2jq3_A Apolipoprotein C-III; APOCIII, structure, dynamics, receptor, lipid binding protein; NMR {Homo sapiens}
Probab=23.58 E-value=32 Score=22.56 Aligned_cols=28 Identities=0% Similarity=0.151 Sum_probs=23.4
Q ss_pred HHHHHHHhchhhhhhhHHHHHHHHHHHH
Q 031272 126 NFMNNVEEQTEELSSKIQVIVDNIRKVE 153 (162)
Q Consensus 126 ~~l~~meeh~~~ls~kvq~iv~~~k~~e 153 (162)
++|..|+++.++-++.+|+.+.+|.|-+
T Consensus 7 sLL~~mQ~YmqqAtktaqdaLtsvQEsq 34 (79)
T 2jq3_A 7 SLLSFMQGYMKHATKTAKDALSSVQESQ 34 (79)
T ss_dssp CTHHHHHHHHHHHGGGHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888999999999999887654
No 20
>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=23.24 E-value=1.4e+02 Score=18.58 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhchhhhhhhHHH
Q 031272 122 EKLFNFMNNVEEQTEELSSKIQV 144 (162)
Q Consensus 122 ~~L~~~l~~meeh~~~ls~kvq~ 144 (162)
+.|.+||+|-..|....+..+..
T Consensus 5 ~KLasFLkDFD~ev~~~~~~~~~ 27 (62)
T 2qfa_B 5 RKLASFLKDFDREVEIRIKQIES 27 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777887777766666666553
No 21
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.14 E-value=1.1e+02 Score=18.38 Aligned_cols=33 Identities=12% Similarity=0.284 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHh
Q 031272 122 EKLFNFMNNVEEQTEELSSKIQVIVDNIRKVES 154 (162)
Q Consensus 122 ~~L~~~l~~meeh~~~ls~kvq~iv~~~k~~e~ 154 (162)
+....||..+.+..+.|...++.+-+.+..+|.
T Consensus 23 ~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 23 DEVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666777766666676666666666666654
No 22
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=22.48 E-value=2.6e+02 Score=21.51 Aligned_cols=41 Identities=5% Similarity=0.170 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhchhhhhhhHH
Q 031272 103 IEELTLELERQEQLCAAYREKLFNFMNNVEEQTEELSSKIQ 143 (162)
Q Consensus 103 I~el~~el~~~~q~~~~y~~~L~~~l~~meeh~~~ls~kvq 143 (162)
+..+..+|....+..+.+.++++-...++++........++
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e 101 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEME 101 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566655555556666666666666655444444433
No 23
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=22.12 E-value=2.5e+02 Score=20.96 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhchhhhhhhHHHHHHHHHHHHhhhhhc
Q 031272 123 KLFNFMNNVEEQTEELSSKIQVIVDNIRKVESEMLKS 159 (162)
Q Consensus 123 ~L~~~l~~meeh~~~ls~kvq~iv~~~k~~e~~~~~~ 159 (162)
+..-...+++.....|-.++..+...+-.++++...+
T Consensus 87 q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L 123 (168)
T 3o0z_A 87 HDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEA 123 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888888888888888888888887776543
No 24
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=20.92 E-value=1.3e+02 Score=23.26 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=17.4
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhh
Q 031272 135 TEELSSKIQVIVDNIRKVESEML 157 (162)
Q Consensus 135 ~~~ls~kvq~iv~~~k~~e~~~~ 157 (162)
.......|+++++|||+|+.-..
T Consensus 71 i~~Tre~v~d~l~YLkkLD~l~~ 93 (204)
T 2jqq_A 71 ISNTQEIIKDVLEYLKKLDEIYG 93 (204)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 34446789999999999987544
No 25
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=20.85 E-value=91 Score=17.57 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=10.0
Q ss_pred hhhhHHHHHHHHHHHHhhhhh
Q 031272 138 LSSKIQVIVDNIRKVESEMLK 158 (162)
Q Consensus 138 ls~kvq~iv~~~k~~e~~~~~ 158 (162)
|+...-.-+|.||.||.++..
T Consensus 11 LNdrlAsyidkVR~LE~~N~~ 31 (39)
T 1gk7_A 11 LNDRFANYIDKVRFLEQQNKI 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555443
No 26
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.50 E-value=2.2e+02 Score=25.28 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=20.4
Q ss_pred HHHhchhhhhhhHHHHHHHHHHHHhhhhh
Q 031272 130 NVEEQTEELSSKIQVIVDNIRKVESEMLK 158 (162)
Q Consensus 130 ~meeh~~~ls~kvq~iv~~~k~~e~~~~~ 158 (162)
+|+.|.+.|-.+|++.+.+++-|+.-..+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLed 142 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRA 142 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777888777777777765443
Done!