Query 031274
Match_columns 162
No_of_seqs 166 out of 456
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 11:47:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00173 60S ribosomal protein 100.0 3.2E-80 6.9E-85 514.1 15.7 159 1-159 1-164 (213)
2 TIGR00279 L10e ribosomal prote 100.0 2.5E-74 5.4E-79 466.4 15.5 156 1-159 1-161 (172)
3 PRK04199 rpl10e 50S ribosomal 100.0 3.7E-72 8E-77 453.8 15.5 156 1-159 1-161 (172)
4 KOG0857 60s ribosomal protein 100.0 4.5E-56 9.8E-61 368.6 2.7 156 1-156 1-162 (212)
5 COG0197 RplP Ribosomal protein 100.0 7.9E-49 1.7E-53 311.0 13.4 127 12-157 2-131 (146)
6 PF00252 Ribosomal_L16: Riboso 100.0 6.8E-34 1.5E-38 220.0 11.5 127 5-161 1-132 (133)
7 cd01433 Ribosomal_L16_L10e Rib 100.0 2.4E-33 5.3E-38 210.4 11.8 102 44-158 4-109 (112)
8 TIGR01164 rplP_bact ribosomal 100.0 7.9E-33 1.7E-37 213.6 10.7 93 50-156 31-126 (126)
9 PRK09203 rplP 50S ribosomal pr 100.0 2E-31 4.3E-36 208.5 10.6 98 50-161 32-132 (138)
10 CHL00044 rpl16 ribosomal prote 100.0 6.4E-31 1.4E-35 205.3 10.8 98 50-161 32-132 (135)
11 KOG3422 Mitochondrial ribosoma 99.8 1.6E-18 3.5E-23 145.2 9.0 100 50-161 71-174 (221)
12 PRK10380 hypothetical protein; 60.3 11 0.00024 26.7 2.9 38 13-56 3-44 (63)
13 COG3129 Predicted SAM-dependen 39.4 58 0.0013 29.2 4.7 50 24-78 73-130 (292)
14 PF04019 DUF359: Protein of un 32.6 1.4E+02 0.003 23.2 5.4 45 28-72 11-58 (121)
15 PF02601 Exonuc_VII_L: Exonucl 32.1 2.3E+02 0.0049 24.2 7.2 108 34-160 2-114 (319)
16 PF06200 tify: tify domain; I 32.0 63 0.0014 20.4 2.8 22 131-152 13-36 (36)
17 KOG3838 Mannose lectin ERGIC-5 31.4 28 0.00061 33.0 1.6 42 6-52 177-221 (497)
18 PF13533 Biotin_lipoyl_2: Biot 26.3 74 0.0016 20.4 2.5 23 128-150 23-45 (50)
19 COG1242 Predicted Fe-S oxidore 26.0 74 0.0016 28.9 3.2 49 44-102 180-228 (312)
20 COG0298 HypC Hydrogenase matur 25.1 1.3E+02 0.0028 22.5 3.8 26 124-149 42-67 (82)
21 smart00380 AP2 DNA-binding dom 22.8 1.3E+02 0.0029 19.9 3.3 31 124-154 12-48 (64)
22 cd00018 AP2 DNA-binding domain 22.6 1.2E+02 0.0026 19.8 3.0 32 123-154 12-49 (61)
23 TIGR03073 release_rtcB release 22.4 2.2E+02 0.0048 25.8 5.6 50 50-128 1-50 (356)
24 PF15380 DUF4607: Domain of un 20.5 47 0.001 29.2 0.9 32 99-130 151-185 (265)
No 1
>PTZ00173 60S ribosomal protein L10; Provisional
Probab=100.00 E-value=3.2e-80 Score=514.14 Aligned_cols=159 Identities=68% Similarity=1.051 Sum_probs=155.7
Q ss_pred CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEEecCccccchhHHHHHHHHHhhhhHHhh
Q 031274 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA 80 (162)
Q Consensus 1 M~~rPa~cYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qIss~aLEAARiaankyl~k~~ 80 (162)
||||||||||+++|||||||+||+||||+||++|||||+++++||||+|+||+|+|.+||||+||||||+|+||||.|++
T Consensus 1 M~~rParcYr~~~~~pY~r~~y~~gvP~~kI~~fd~G~~~a~~~~fp~~v~Lvs~E~~qIss~aLEAaRia~nr~l~K~~ 80 (213)
T PTZ00173 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIYDIGRKKATVDEFPVCVHIVSDEYEQISSEALEAARISANKYMVKRA 80 (213)
T ss_pred CCCCchhhhhcccCCCCchhhccCCCCCCcEEEEecCCCcCCcccCCeEEEEEEcccccccHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCcceeEEEEecCCceeeecccccccchhhhhccccCcCCCcceEEEEEeeceEEEe-----cCHHHHHHHHHHhhcCCC
Q 031274 81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFMLKRLFVVQS-----SSFLVAKKSLSAESGVSP 155 (162)
Q Consensus 81 Gk~~f~l~Irv~P~hvlr~nkmls~AGADRlq~gMr~afGkp~g~vArV~~g~~i~~-----~~~~~AkeALr~a~~klp 155 (162)
|+++||+|||+|||||||||||||||||||||+|||+|||+|+||||||++||+||+ ++++.|+|||++|++|||
T Consensus 81 Gk~~fhl~IRv~P~hvlR~nKm~T~AgAdrlq~gMr~gfGkp~g~vArVk~Gqiifei~~~~~~~~~AkeALrrA~~KlP 160 (213)
T PTZ00173 81 GKDGFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPNGTCARVRIGQILLSIRTKEAYVPQAIEALRRAKYKFP 160 (213)
T ss_pred CCccceEEEEEcCCcccccccccccccCchhhhhcccCCCCccEEEEEECcCCEEEEEecccCCHHHHHHHHHHhcccCC
Confidence 999999999999999999999999999999999999999999999999999999997 799999999999999999
Q ss_pred ccee
Q 031274 156 SLAA 159 (162)
Q Consensus 156 ~~~~ 159 (162)
+=.-
T Consensus 161 ~~~k 164 (213)
T PTZ00173 161 GRQK 164 (213)
T ss_pred CeEE
Confidence 8543
No 2
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=100.00 E-value=2.5e-74 Score=466.44 Aligned_cols=156 Identities=53% Similarity=0.840 Sum_probs=151.7
Q ss_pred CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEEecCccccchhHHHHHHHHHhhhhHHhh
Q 031274 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA 80 (162)
Q Consensus 1 M~~rPa~cYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qIss~aLEAARiaankyl~k~~ 80 (162)
|++|||||||++++|||||++||+|||++||++|||||++ +|||+|++|+++|++||||+||||||+++||||++.+
T Consensus 1 m~~rp~r~Yr~~~~~~Ytr~~y~~g~P~~kI~~f~~G~~~---~~fp~~~~L~a~E~~~I~~~qiEAaR~a~~r~lkk~~ 77 (172)
T TIGR00279 1 MARRPARCYRYQKNRPYTRSEYIKGVPGSKIRIYDMGNKS---AEFPVCVHLVAKEPEQIRHNALEAARIAANKYMTRRA 77 (172)
T ss_pred CCCCchhhhcccCCCCCchhhccCCCCCCcEEEEECCCcc---CCCCEEEEEEECccceecHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999999999986 5899999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCceeeecccccccchhhhhccccCcCCCcceEEEEEeeceEEEe---c--CHHHHHHHHHHhhcCCC
Q 031274 81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFMLKRLFVVQS---S--SFLVAKKSLSAESGVSP 155 (162)
Q Consensus 81 Gk~~f~l~Irv~P~hvlr~nkmls~AGADRlq~gMr~afGkp~g~vArV~~g~~i~~---~--~~~~AkeALr~a~~klp 155 (162)
|++|||+|||+|||||||+|||++++||||||+|||+|||+|+||||+|++|++||| + ++++|+|||++|++|||
T Consensus 78 g~~~~k~wIRvfP~~~lt~kp~~trmGaDRlq~GMr~gkG~p~~wvArVk~Gqiifei~~~~~~~~~AkeAlr~A~~KLP 157 (172)
T TIGR00279 78 GRMGYHLKIRVYPHHILRENKMATGAGADRIQQGMRGAFGKPVGTAARVKIGQKIFSVWTKPSNFDVAKEALRRAAMKFP 157 (172)
T ss_pred CccceEEEEEECCCCceecCchhhhcCchhhhcccccCCCCccEEEEEECcCCEEEEEEeecCCHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999998 4 89999999999999999
Q ss_pred ccee
Q 031274 156 SLAA 159 (162)
Q Consensus 156 ~~~~ 159 (162)
+=.-
T Consensus 158 ~~~k 161 (172)
T TIGR00279 158 VPCK 161 (172)
T ss_pred CcEE
Confidence 8543
No 3
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=100.00 E-value=3.7e-72 Score=453.75 Aligned_cols=156 Identities=42% Similarity=0.662 Sum_probs=151.4
Q ss_pred CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEEecCccccchhHHHHHHHHHhhhhHHhh
Q 031274 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA 80 (162)
Q Consensus 1 M~~rPa~cYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qIss~aLEAARiaankyl~k~~ 80 (162)
|++|||+|||++++|||||++||+|||++||++|||||++ +|||+|++|+++|++||||+||||||+++||||++++
T Consensus 1 m~~rp~~~Yr~~~~~~ytr~~yi~g~P~~kI~~f~~G~~~---~~~~~~~~L~a~E~~~I~~~qiEAaR~ai~r~lkk~~ 77 (172)
T PRK04199 1 MPLRPARCYRHISKPAYTRREYIGGVPGPKIVKFDMGNLS---GDFPVEVSLVVEEPCQIRHNALEAARIAANKYLTKTV 77 (172)
T ss_pred CCCCchhhhcccCCCCCchhcccCCCCCCeEEEEecCCcC---CCCCEEEEEEEcccccccHHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999976 7999999999999999999999999999999999988
Q ss_pred CCcceeEEEEecCCceeeecccccccchhhhhccccCcCCCcceEEEEEeeceEEEe-----cCHHHHHHHHHHhhcCCC
Q 031274 81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFMLKRLFVVQS-----SSFLVAKKSLSAESGVSP 155 (162)
Q Consensus 81 Gk~~f~l~Irv~P~hvlr~nkmls~AGADRlq~gMr~afGkp~g~vArV~~g~~i~~-----~~~~~AkeALr~a~~klp 155 (162)
|++|||+|||+|||||||+|||.++|||||||+|||+|||+|+||||+|++|++||| +++++|+|||++|++|||
T Consensus 78 G~~~~k~wIrvfP~~~lt~kp~~~rmGAdRmg~GMr~akG~p~~wva~Vk~G~ilfei~~~~~~~~~akeAlr~a~~KLP 157 (172)
T PRK04199 78 GRSNYHLKIRVYPHHVLRENKMATGAGADRVSDGMRLAFGKPVGTAARVEKGQKIFTVRVNPEHLEAAKEALRRAAMKLP 157 (172)
T ss_pred CCcccEEEEEeCCCcceecChhHhhcchhhhccCcccCCCCccEEEEEECcCCEEEEEEecCCCHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999999999999999998 489999999999999999
Q ss_pred ccee
Q 031274 156 SLAA 159 (162)
Q Consensus 156 ~~~~ 159 (162)
+=.-
T Consensus 158 ~k~k 161 (172)
T PRK04199 158 TPCR 161 (172)
T ss_pred CcEE
Confidence 8543
No 4
>KOG0857 consensus 60s ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-56 Score=368.55 Aligned_cols=156 Identities=71% Similarity=1.047 Sum_probs=154.2
Q ss_pred CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEEecCccccchhHHHHHHHHHhhhhHHhh
Q 031274 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA 80 (162)
Q Consensus 1 M~~rPa~cYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qIss~aLEAARiaankyl~k~~ 80 (162)
|||+|++|||+++++||++++||+|+||+||+|||+|.+++.++|||+|++++++|.++++++|+||+|+++|+|+.+++
T Consensus 1 ~~~~~~~~yr~~~~~~~~ksr~~r~~p~~~~ri~d~~~~k~~~~e~~l~v~~~~~~~~~l~~~~~eA~ri~~~~~~~~~~ 80 (212)
T KOG0857|consen 1 MGRRPARCYRYSKRKPYPKSRFCRGVPDTKIRIYDLGRKKAGVDEFPLCVHLVSNEIEQLSSEALEAARICANKPMVKSK 80 (212)
T ss_pred CCCChhhhhhHHhcCCCcccccccCCCCCceeHHHhcCcCCCCcccchhhhhhhHHHHhHHHHHHHHhhhcccCcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecC-CceeeecccccccchhhhhccccCcCCCcceEEEEEeeceEEEe-----cCHHHHHHHHHHhhcCC
Q 031274 81 GKDAFHLRVRVHP-FHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFMLKRLFVVQS-----SSFLVAKKSLSAESGVS 154 (162)
Q Consensus 81 Gk~~f~l~Irv~P-~hvlr~nkmls~AGADRlq~gMr~afGkp~g~vArV~~g~~i~~-----~~~~~AkeALr~a~~kl 154 (162)
|+|+||+++|+|| +||+++||||||||+|||||||+++||||.|+||||+.||++++ .+.|+++|||++|..|.
T Consensus 81 ~~d~~~~r~~~~~~fhv~~i~k~ls~~~~~RLQtgmrga~gkp~G~varV~iGqvi~Svrtk~~nkeh~ieal~rak~kf 160 (212)
T KOG0857|consen 81 GKDAFHLRVRVHPNFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSVRTKLQNKEHVIEALRRAKFKF 160 (212)
T ss_pred cccchhhhhhcccchhHHHHhhhhcccchhhhhhcccccccCccceEEEEEcCceEEEeecCcccHHHHHHHHHhccccC
Confidence 9999999999999 99999999999999999999999999999999999999999996 89999999999999999
Q ss_pred Cc
Q 031274 155 PS 156 (162)
Q Consensus 155 p~ 156 (162)
|-
T Consensus 161 pG 162 (212)
T KOG0857|consen 161 PG 162 (212)
T ss_pred CC
Confidence 95
No 5
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-49 Score=310.98 Aligned_cols=127 Identities=29% Similarity=0.334 Sum_probs=120.1
Q ss_pred cCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEEecCccccchhHHHHHHHHHhhhhHHhhCCcceeEEEEe
Q 031274 12 IKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRV 91 (162)
Q Consensus 12 ~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qIss~aLEAARiaankyl~k~~Gk~~f~l~Irv 91 (162)
...|+|||.+|++|+|+++|++||+||+ +|+.+++|++.|++||||+||||||+|+||||++ .|+ +|||+
T Consensus 2 ml~Pk~tk~rk~~~g~~~~~~~~~~G~~-----~~fg~~gL~a~e~~~It~~qiEAARia~~R~lkr-~g~----~wIRv 71 (146)
T COG0197 2 MLQPKRTKYRKQHKGRGPGITIAKGGNK-----VFFGEYGLVALEPGQITARQIEAARIAANRYLKR-GGG----LWIRV 71 (146)
T ss_pred CcCCCcceeecccCCCCCCceeccCCcc-----ccceEEEEEEcccceecHHHHHHHHHHHHHHhhh-cCC----EEEEE
Confidence 4678999999999999999999999986 7999999999999999999999999999999996 665 99999
Q ss_pred cCCceeeecccccccchhhhhccccCcCCCcceEEEEEeeceEEEe---cCHHHHHHHHHHhhcCCCcc
Q 031274 92 HPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFMLKRLFVVQS---SSFLVAKKSLSAESGVSPSL 157 (162)
Q Consensus 92 ~P~hvlr~nkmls~AGADRlq~gMr~afGkp~g~vArV~~g~~i~~---~~~~~AkeALr~a~~klp~~ 157 (162)
|||||||+|| |+||+++|| |+|+||||||++|++||+ ++++.|+||||+|++|||+-
T Consensus 72 fP~~~~~~kp-----~e~Rmg~Gk----G~pegwaArVkpG~vlfei~g~~e~~A~EAlr~Aa~KLP~~ 131 (146)
T COG0197 72 FPDKPLTEKP-----GEDRMGKGK----GKPEGWAARVKPGRVLFEIAGVPEELAREALRRAAAKLPVK 131 (146)
T ss_pred cCCceeeeCC-----CcccccCCC----CCccEEEEEecCCcEEEEEecCcHHHHHHHHHHHhhcCCCc
Confidence 9999999999 788888777 999999999999999998 89999999999999999985
No 6
>PF00252 Ribosomal_L16: Ribosomal protein L16p/L10e; InterPro: IPR016180 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a structural domain with an alpha/beta-hammerhead fold, where the beta-hammerhead motif is similar to that in barrel-sandwich hybrids. Domains of this structure can be found in ribosomal proteins L10e and L16. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 2ZJR_J 1Y69_K 3DLL_J 2ZJQ_J 2ZJP_J 3PIO_J 3CF5_J 3PIP_J 2ZKR_h 3J11_O ....
Probab=100.00 E-value=6.8e-34 Score=219.96 Aligned_cols=127 Identities=32% Similarity=0.464 Sum_probs=113.7
Q ss_pred cccc-ccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEEecCccccchhHHHHHHHHHhhhhHHhhCCc
Q 031274 5 PARC-YRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKD 83 (162)
Q Consensus 5 Pa~c-Yr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qIss~aLEAARiaankyl~k~~Gk~ 83 (162)
|.+| ||. ..+ |+|.+|+.+.|+.++. | |+ ++|++.|.+|||++||||||+++||+|++ .|+
T Consensus 1 Pk~~kyrk-~~k-~~r~~~~~~~~~~~l~-~--g~-----------~gl~a~~~g~l~~~qlEa~R~~i~r~lkk-~~~- 62 (133)
T PF00252_consen 1 PKRTKYRK-YQK-YPRINYGKSKPGNKLK-F--GD-----------YGLKALEPGRLTSNQLEAARIAINRYLKK-NGK- 62 (133)
T ss_dssp TSCCSTSS-SSS--SSTTTSTTSSCSSSS-S--SS-----------EEEEESS-EEEEHHHHHHHHHHHHHHHHH-TST-
T ss_pred CCCCccCC-CCC-CCCCCcccccCccEEE-e--ee-----------eeEEEeeeeeechhhhHHHHHHHHHHhhh-hee-
Confidence 7899 988 445 9999999999988887 4 32 89999999999999999999999999987 665
Q ss_pred ceeEEEEecCCceeeecccccccchhhhhccccCcCCCcceEEEEEeeceEEEe----cCHHHHHHHHHHhhcCCCccee
Q 031274 84 AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFMLKRLFVVQS----SSFLVAKKSLSAESGVSPSLAA 159 (162)
Q Consensus 84 ~f~l~Irv~P~hvlr~nkmls~AGADRlq~gMr~afGkp~g~vArV~~g~~i~~----~~~~~AkeALr~a~~klp~~~~ 159 (162)
+|||+|||+++|+|| ++++|++|+|+|++|+|+|++|++||| ++++.|++||++|++|||+-.-
T Consensus 63 ---~~i~v~p~~~vTkk~---------~~~RMG~GKG~~~~~~a~V~~G~iifEi~~~v~~~~a~~alk~a~~KLP~~~~ 130 (133)
T PF00252_consen 63 ---LWIRVFPHHPVTKKP---------LETRMGKGKGKIDHWVARVKPGQIIFEIGGKVNEEEAKEALKRAAKKLPIKTK 130 (133)
T ss_dssp ---EEESSSCEEEEEE-S---------SSSSSSSSSCEEEEEEEEESTTEEEEEEESGSCHHHHHHHHHHHHHTSSSCEE
T ss_pred ---EEEEeeeeeeeeeeh---------hhhhhccCCCCccEEEEEECCCcEEEEECCcCCHHHHHHHHHHHHhhCCCCEE
Confidence 999999999999999 799999999999999999999999998 6899999999999999999776
Q ss_pred cc
Q 031274 160 VI 161 (162)
Q Consensus 160 ~~ 161 (162)
+|
T Consensus 131 ~v 132 (133)
T PF00252_consen 131 FV 132 (133)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 7
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=100.00 E-value=2.4e-33 Score=210.42 Aligned_cols=102 Identities=32% Similarity=0.316 Sum_probs=96.5
Q ss_pred CCCCeEEEEEecCccccchhHHHHHHHHHhhhhHHhhCCcceeEEEEecCCceeeecccccccchhhhhccccCcCCCcc
Q 031274 44 DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQ 123 (162)
Q Consensus 44 ~~fp~~~~Lvs~E~~qIss~aLEAARiaankyl~k~~Gk~~f~l~Irv~P~hvlr~nkmls~AGADRlq~gMr~afGkp~ 123 (162)
..++.+.+|+++|++|||++||||||+++||||.+. +|++|||+||||++|+|| +++|||+|||+|+
T Consensus 4 ~~~~g~~gL~a~e~~~i~~~~lEa~R~~i~r~l~k~----~~~~~ir~~p~~~vt~k~---------~~~rMGkGKG~~~ 70 (112)
T cd01433 4 KLFFGEYGLVALEPGRITAEQLEAARIAINRYLKKK----GGKLWIRVFPDHPVTKKP---------LETRMGKGKGKPE 70 (112)
T ss_pred eeccceEEEEECcCCeECHHHHHHHHHHHHHHhhhc----CceEEEEecCCccEEECc---------cccccCCCCCCcc
Confidence 478889999999999999999999999999999974 678999999999999999 9999999999999
Q ss_pred eEEEEEeeceEEEe---cC-HHHHHHHHHHhhcCCCcce
Q 031274 124 AIVFMLKRLFVVQS---SS-FLVAKKSLSAESGVSPSLA 158 (162)
Q Consensus 124 g~vArV~~g~~i~~---~~-~~~AkeALr~a~~klp~~~ 158 (162)
+|||+|++|++||| ++ ++.|++||++|+.|||+-.
T Consensus 71 ~~~a~v~~G~iifEi~~~~~~~~~~~alk~a~~Klp~~~ 109 (112)
T cd01433 71 GWVARVKPGQILFEVRGVPEEEVAKEALRRAAKKLPIKT 109 (112)
T ss_pred EEEEEECCCCEEEEEeCcCcHHHHHHHHHHhhccCCCcE
Confidence 99999999999998 66 8999999999999999754
No 8
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=100.00 E-value=7.9e-33 Score=213.62 Aligned_cols=93 Identities=23% Similarity=0.280 Sum_probs=89.2
Q ss_pred EEEEecCccccchhHHHHHHHHHhhhhHHhhCCcceeEEEEecCCceeeecccccccchhhhhccccCcCCCcceEEEEE
Q 031274 50 VHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFML 129 (162)
Q Consensus 50 ~~Lvs~E~~qIss~aLEAARiaankyl~k~~Gk~~f~l~Irv~P~hvlr~nkmls~AGADRlq~gMr~afGkp~g~vArV 129 (162)
.+|+++|.+|||++||||||+++||||.+ +|++|||+|||+++|+|| ++++|++|||+|++|||+|
T Consensus 31 ~gL~a~e~~~i~~~qlEaaR~~i~r~l~~-----~~~~~irv~P~~~vt~k~---------~~~RMGkGKG~~~~~varV 96 (126)
T TIGR01164 31 YGLQALEPGWITARQIEAARVAMTRYVKR-----GGKLWIRIFPDKPYTKKP---------LETRMGKGKGNPEYWVAVV 96 (126)
T ss_pred EeeEECcCCeEcHHHHHHHHHHHHHHHhh-----CceEEEEECCCcCEEeCc---------hhccccCCCCCCCEEEEEE
Confidence 68999999999999999999999999983 567999999999999999 7889999999999999999
Q ss_pred eeceEEEe---cCHHHHHHHHHHhhcCCCc
Q 031274 130 KRLFVVQS---SSFLVAKKSLSAESGVSPS 156 (162)
Q Consensus 130 ~~g~~i~~---~~~~~AkeALr~a~~klp~ 156 (162)
++|++||| ++++.|++||++|++|||+
T Consensus 97 ~~G~ilfEi~~~~~~~a~~al~~a~~KLP~ 126 (126)
T TIGR01164 97 KPGKILFEIAGVPEEVAREAFRLAASKLPI 126 (126)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHhcCCC
Confidence 99999998 9999999999999999996
No 9
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=99.97 E-value=2e-31 Score=208.54 Aligned_cols=98 Identities=21% Similarity=0.273 Sum_probs=92.1
Q ss_pred EEEEecCccccchhHHHHHHHHHhhhhHHhhCCcceeEEEEecCCceeeecccccccchhhhhccccCcCCCcceEEEEE
Q 031274 50 VHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFML 129 (162)
Q Consensus 50 ~~Lvs~E~~qIss~aLEAARiaankyl~k~~Gk~~f~l~Irv~P~hvlr~nkmls~AGADRlq~gMr~afGkp~g~vArV 129 (162)
.+|+++|.+|||++||||||+++||||.+ .|+ +|||+||||++|+|| ++++|++|||+|++|||+|
T Consensus 32 ~gL~a~e~g~i~~~qlEaaR~~i~r~Lkk-~g~----~~irv~P~~~vt~k~---------~~~RMGkGKG~~~~~varV 97 (138)
T PRK09203 32 FGLKALEPGWITARQIEAARIAMTRHIKR-GGK----VWIRIFPDKPVTKKP---------AEVRMGKGKGSPEYWVAVV 97 (138)
T ss_pred EEEEECcCCeEcHHHHHHHHHHHHHHhhc-Cce----EEEEeCCCccEEcCh---------hhccccCCCCCCcEEEEEE
Confidence 69999999999999999999999999975 674 999999999999999 7899999999999999999
Q ss_pred eeceEEEe---cCHHHHHHHHHHhhcCCCcceecc
Q 031274 130 KRLFVVQS---SSFLVAKKSLSAESGVSPSLAAVI 161 (162)
Q Consensus 130 ~~g~~i~~---~~~~~AkeALr~a~~klp~~~~~~ 161 (162)
++|++||| ++++.|++||++|++|||+-.-+|
T Consensus 98 k~G~iifEi~~~~~~~a~~al~~a~~KLP~~~kii 132 (138)
T PRK09203 98 KPGRILFEIAGVSEELAREALRLAAAKLPIKTKFV 132 (138)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhccCCCcEEEE
Confidence 99999998 999999999999999999866543
No 10
>CHL00044 rpl16 ribosomal protein L16
Probab=99.97 E-value=6.4e-31 Score=205.34 Aligned_cols=98 Identities=20% Similarity=0.250 Sum_probs=91.4
Q ss_pred EEEEecCccccchhHHHHHHHHHhhhhHHhhCCcceeEEEEecCCceeeecccccccchhhhhccccCcCCCcceEEEEE
Q 031274 50 VHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFML 129 (162)
Q Consensus 50 ~~Lvs~E~~qIss~aLEAARiaankyl~k~~Gk~~f~l~Irv~P~hvlr~nkmls~AGADRlq~gMr~afGkp~g~vArV 129 (162)
.+|++.|.+|||++||||||+++||||++ +|++|||+|||+++|+|| .+++|++|||+|++|||+|
T Consensus 32 ~GL~a~e~~~i~~~qiEaaR~~i~r~lkk-----~~~i~irv~P~~pvtkkp---------~e~RMGkGKG~~~~~va~V 97 (135)
T CHL00044 32 YALQALEPAWITSRQIEAGRRAITRYARR-----GGKIWIRIFPDKPVTMRP---------AETRMGSGKGSPEYWVAVV 97 (135)
T ss_pred EEEEEccCcEECHHHHHHHHHHHHHhhhc-----CcEEEEEECCCcceEeCc---------ccccccCCCCCccEEEEEE
Confidence 68999999999999999999999999975 457999999999999999 7889999999999999999
Q ss_pred eeceEEEe---cCHHHHHHHHHHhhcCCCcceecc
Q 031274 130 KRLFVVQS---SSFLVAKKSLSAESGVSPSLAAVI 161 (162)
Q Consensus 130 ~~g~~i~~---~~~~~AkeALr~a~~klp~~~~~~ 161 (162)
++|++||| +++++|++||++|++|||+-.-+|
T Consensus 98 ~~G~ilfEi~g~~~~~ak~al~~a~~KLP~k~~~v 132 (135)
T CHL00044 98 KPGRILYEMGGVSETIARAAIKIAAYKMPIKTQFI 132 (135)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHhhcCCCcEEEE
Confidence 99999998 889999999999999999865443
No 11
>KOG3422 consensus Mitochondrial ribosomal protein L16 [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.6e-18 Score=145.20 Aligned_cols=100 Identities=17% Similarity=0.095 Sum_probs=91.6
Q ss_pred EEEEecCccccchhHHHHHHHHHhhhhHHhhCCcceeEEEEecCCceeeecccccccchhhhhccccCcCCCcceEEEEE
Q 031274 50 VHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFML 129 (162)
Q Consensus 50 ~~Lvs~E~~qIss~aLEAARiaankyl~k~~Gk~~f~l~Irv~P~hvlr~nkmls~AGADRlq~gMr~afGkp~g~vArV 129 (162)
..|.+.+.++|+|.++|+.|...++++.- ..+|++|.|++|+.+++.++ -+|+|++|+|.|++|||+|
T Consensus 71 Ygl~a~~~g~l~~~~~e~~r~~~~r~~~~---~~~~~iWrr~~p~~Pvt~K~---------~etRMG~GKGa~d~wva~V 138 (221)
T KOG3422|consen 71 YGLRAKSGGILDSAQFEAMRLTRARKMNP---RNNGKIWRRPAPNLPVTVKG---------NETRMGGGKGAIDHWVARV 138 (221)
T ss_pred hhheeccCceeeHHHHHHHHHHHHHhcCc---ccCccEEEEecCCCceeecC---------cceeccCCCCCcceeEEEe
Confidence 46899999999999999999888888763 45778999999999999999 7999999999999999999
Q ss_pred eeceEEEe----cCHHHHHHHHHHhhcCCCcceecc
Q 031274 130 KRLFVVQS----SSFLVAKKSLSAESGVSPSLAAVI 161 (162)
Q Consensus 130 ~~g~~i~~----~~~~~AkeALr~a~~klp~~~~~~ 161 (162)
+.|+|+|| ++++.|++||..|++|||+-+-+|
T Consensus 139 ~~GrIl~EmgG~~~~~~Ar~al~~aa~klp~~~efV 174 (221)
T KOG3422|consen 139 KAGRILFEMGGDVEEEEARQALLQAAHKLPFKYEFV 174 (221)
T ss_pred cCCcEEEEeCCcccHHHHHHHHHHHHhcCCccEEEe
Confidence 99999998 889999999999999999976554
No 12
>PRK10380 hypothetical protein; Provisional
Probab=60.30 E-value=11 Score=26.71 Aligned_cols=38 Identities=24% Similarity=0.537 Sum_probs=29.8
Q ss_pred CCCCCCCCCCc----CCCCCCceeEEecCCCCCCCCCCCeEEEEEecC
Q 031274 13 KNKPYPKSRFC----RGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWE 56 (162)
Q Consensus 13 ~~~pY~r~~y~----~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E 56 (162)
.+|||||.-+| +|.|+-.++-|.+- | |+|--=+|+|+-
T Consensus 3 ~rPpYPReA~iV~vekG~~g~~vtwyelR---a---Dhp~P~sliSEH 44 (63)
T PRK10380 3 TKPPYPREAYIVTIEKGKPGQTVTWYQLR---A---DHPKPDSLISEH 44 (63)
T ss_pred CCCCCCcceEEEEeecCCCCceEEEEEee---c---CCCCCCcccccC
Confidence 46899998887 89999999999885 3 566656677754
No 13
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=39.41 E-value=58 Score=29.15 Aligned_cols=50 Identities=26% Similarity=0.460 Sum_probs=35.8
Q ss_pred CCCCCCceeEEecCCCCCCCCCCCeEEEEEecCccc------cchhHHHHHH--HHHhhhhHH
Q 031274 24 RGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKEN------VSSEALEAAR--IACNKYMAK 78 (162)
Q Consensus 24 ~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~q------Iss~aLEAAR--iaankyl~k 78 (162)
.++|.+.|++-|.|- .|+. -||+-+ ..|++| |++.+||+|. |.+|-.|..
T Consensus 73 g~~~~~~i~~LDIGv-GAnC-IYPliG---~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~ 130 (292)
T COG3129 73 GQIPGKNIRILDIGV-GANC-IYPLIG---VHEYGWRFVGSEIDSQSLSSAKAIISANPGLER 130 (292)
T ss_pred CCCCcCceEEEeecc-Cccc-cccccc---ceeecceeecCccCHHHHHHHHHHHHcCcchhh
Confidence 478889999999995 5654 488755 344443 8999999987 455655654
No 14
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=32.64 E-value=1.4e+02 Score=23.15 Aligned_cols=45 Identities=27% Similarity=0.206 Sum_probs=32.2
Q ss_pred CCceeEEecCCCCCCCCCC---CeEEEEEecCccccchhHHHHHHHHH
Q 031274 28 DPKIRIYDVGMKKKGVDEF---PFCVHLVSWEKENVSSEALEAARIAC 72 (162)
Q Consensus 28 ~~KI~~fd~G~~~a~~~~f---p~~~~Lvs~E~~qIss~aLEAARiaa 72 (162)
-|.|.++|.=-+.....+- .....-+.+.++.||.+++||-+-|+
T Consensus 11 ~P~laIvD~kTkR~~~~~~~~~~~~~i~v~NPpG~It~el~~ai~~a~ 58 (121)
T PF04019_consen 11 IPDLAIVDGKTKREPVVEEVRKFYRVIEVKNPPGTITEELIEAIKKAL 58 (121)
T ss_pred CCCEEEEeCcccccCCcccccCCceEEEEECCCCcccHHHHHHHHHHH
Confidence 3567888875444333222 24677788999999999999999884
No 15
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=32.12 E-value=2.3e+02 Score=24.20 Aligned_cols=108 Identities=14% Similarity=0.183 Sum_probs=61.7
Q ss_pred EecCCCCCCCCCCCeEEEEEecCccccchhHHHHHHHHHhhhhHHhhCCcceeEEEEecCCceeeecccccccch-hhhh
Q 031274 34 YDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGA-DRLQ 112 (162)
Q Consensus 34 fd~G~~~a~~~~fp~~~~Lvs~E~~qIss~aLEAARiaankyl~k~~Gk~~f~l~Irv~P~hvlr~nkmls~AGA-DRlq 112 (162)
||.-.| -....||-++.+++-+ ++-+++=-...++ +.++.+.|.+||-.|=.++--.+-..| .++.
T Consensus 2 fd~~~k-~~lP~~p~~I~vITs~----~gAa~~D~~~~~~--------~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~ 68 (319)
T PF02601_consen 2 FDPNRK-KPLPKFPKRIAVITSP----TGAAIQDFLRTLK--------RRNPIVEIILYPASVQGEGAAASIVSALRKAN 68 (319)
T ss_pred CCcccC-CCCCCCCCEEEEEeCC----chHHHHHHHHHHH--------HhCCCcEEEEEeccccccchHHHHHHHHHHHH
Confidence 777654 4567899999999887 3444433322222 245568999999877654433333333 2221
Q ss_pred ccccCcCCCcceEEEEEee-ceE--EEe-cCHHHHHHHHHHhhcCCCcceec
Q 031274 113 TGMRGAFGKPQAIVFMLKR-LFV--VQS-SSFLVAKKSLSAESGVSPSLAAV 160 (162)
Q Consensus 113 ~gMr~afGkp~g~vArV~~-g~~--i~~-~~~~~AkeALr~a~~klp~~~~~ 160 (162)
.+. .+.+.-.+..++= |-. +|. .++++|+. .+..++||+.+|
T Consensus 69 -~~~--~~~~~Dviii~RGGGs~eDL~~FN~e~vara---i~~~~~PvisaI 114 (319)
T PF02601_consen 69 -EMG--QADDFDVIIIIRGGGSIEDLWAFNDEEVARA---IAASPIPVISAI 114 (319)
T ss_pred -hcc--ccccccEEEEecCCCChHHhcccChHHHHHH---HHhCCCCEEEec
Confidence 111 2223334444443 322 665 77777664 567889999876
No 16
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=32.03 E-value=63 Score=20.36 Aligned_cols=22 Identities=18% Similarity=-0.139 Sum_probs=18.1
Q ss_pred eceE-EEe-cCHHHHHHHHHHhhc
Q 031274 131 RLFV-VQS-SSFLVAKKSLSAESG 152 (162)
Q Consensus 131 ~g~~-i~~-~~~~~AkeALr~a~~ 152 (162)
-|++ +|. +..+.|++-|++|+.
T Consensus 13 ~G~V~Vfd~v~~~Ka~~im~lA~r 36 (36)
T PF06200_consen 13 GGQVCVFDDVPPDKAQEIMLLASR 36 (36)
T ss_pred CCEEEEeCCCCHHHHHHHHHHhcC
Confidence 4777 665 999999999999873
No 17
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.35 E-value=28 Score=33.01 Aligned_cols=42 Identities=33% Similarity=0.773 Sum_probs=28.0
Q ss_pred cccccccCCCCCCC---CCCcCCCCCCceeEEecCCCCCCCCCCCeEEEE
Q 031274 6 ARCYRQIKNKPYPK---SRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHL 52 (162)
Q Consensus 6 a~cYr~~~~~pY~r---~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~L 52 (162)
+.|-|.+.|||||= -+|..-|- -..-|-|-... |+|.+|+..
T Consensus 177 ssCqrDFRNkPyPvRarItY~~nvL---tv~innGmtp~--d~yE~C~rv 221 (497)
T KOG3838|consen 177 SSCQRDFRNKPYPVRARITYYGNVL---TVMINNGMTPS--DDYEFCVRV 221 (497)
T ss_pred HHhhHHhccCCCCceEEEEEeccEE---EEEEcCCCCCC--CCcceeEec
Confidence 67999999999994 45554442 23345564332 789999753
No 18
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=26.33 E-value=74 Score=20.36 Aligned_cols=23 Identities=13% Similarity=-0.071 Sum_probs=13.4
Q ss_pred EEeeceEEEecCHHHHHHHHHHh
Q 031274 128 MLKRLFVVQSSSFLVAKKSLSAE 150 (162)
Q Consensus 128 rV~~g~~i~~~~~~~AkeALr~a 150 (162)
.|+.|++|+..+.+.-..+++.+
T Consensus 23 ~VkkGd~L~~ld~~~~~~~~~~~ 45 (50)
T PF13533_consen 23 QVKKGDVLLVLDSPDLQAQLQQA 45 (50)
T ss_pred EEcCCCEEEEECcHHHHHHHHHH
Confidence 46679999983333334444443
No 19
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=26.04 E-value=74 Score=28.88 Aligned_cols=49 Identities=31% Similarity=0.571 Sum_probs=38.4
Q ss_pred CCCCeEEEEEecCccccchhHHHHHHHHHhhhhHHhhCCcceeEEEEecCCceeeeccc
Q 031274 44 DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKM 102 (162)
Q Consensus 44 ~~fp~~~~Lvs~E~~qIss~aLEAARiaankyl~k~~Gk~~f~l~Irv~P~hvlr~nkm 102 (162)
..--+|.||+..=++-=+.+-||.|++.++ .|-+ =|.+||-|++.--||
T Consensus 180 rgIkvc~HiI~GLPgE~~~~mleTak~v~~------~~v~----GIKlH~LhvvkgT~m 228 (312)
T COG1242 180 RGIKVCTHLINGLPGETRDEMLETAKIVAE------LGVD----GIKLHPLHVVKGTPM 228 (312)
T ss_pred cCCeEEEEEeeCCCCCCHHHHHHHHHHHHh------cCCc----eEEEEEEEEecCChH
Confidence 356799999999998889999999996543 4432 277799999976665
No 20
>COG0298 HypC Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=25.14 E-value=1.3e+02 Score=22.47 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=20.5
Q ss_pred eEEEEEeeceEEEecCHHHHHHHHHH
Q 031274 124 AIVFMLKRLFVVQSSSFLVAKKSLSA 149 (162)
Q Consensus 124 g~vArV~~g~~i~~~~~~~AkeALr~ 149 (162)
|--.-|+.|+.|-..|+|.|||.|+.
T Consensus 42 GdyVLVHvGfAi~~idEeeAketle~ 67 (82)
T COG0298 42 GDYVLVHVGFAMSKIDEEEAKETLEA 67 (82)
T ss_pred CCEEEEEeeEEEeecCHHHHHHHHHH
Confidence 33447788888888999999998764
No 21
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=22.84 E-value=1.3e+02 Score=19.95 Aligned_cols=31 Identities=10% Similarity=-0.179 Sum_probs=23.7
Q ss_pred eEEEEEee---ceEEEe---cCHHHHHHHHHHhhcCC
Q 031274 124 AIVFMLKR---LFVVQS---SSFLVAKKSLSAESGVS 154 (162)
Q Consensus 124 g~vArV~~---g~~i~~---~~~~~AkeALr~a~~kl 154 (162)
-|.|+|.. |.-++. .++|.|-.|...|+.++
T Consensus 12 kw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~ 48 (64)
T smart00380 12 KWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKF 48 (64)
T ss_pred eEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHh
Confidence 39999885 545664 88999999988887654
No 22
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=22.62 E-value=1.2e+02 Score=19.84 Aligned_cols=32 Identities=6% Similarity=-0.148 Sum_probs=23.9
Q ss_pred ceEEEEEeec---eEEEe---cCHHHHHHHHHHhhcCC
Q 031274 123 QAIVFMLKRL---FVVQS---SSFLVAKKSLSAESGVS 154 (162)
Q Consensus 123 ~g~vArV~~g---~~i~~---~~~~~AkeALr~a~~kl 154 (162)
..|.|+|... ..++. .++|.|..|...|+.+|
T Consensus 12 gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~ 49 (61)
T cd00018 12 GKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKL 49 (61)
T ss_pred CcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHh
Confidence 4499999864 56664 88999999887776554
No 23
>TIGR03073 release_rtcB release factor H-coupled RctB family protein. Members of this family are related to RctB. RctB a protein of known structure but unknown function that often is encoded near RNA cyclase and therefore is suggested to be a tRNA or mRNA processing enzyme. This family of RctB-like proteins in encoded upstream of, and apparently is translationally coupled to, the putative peptide chain release factor RF-H (TIGR03072), product of the prfH gene. Note that a large deletion at the junction between this gene and the prfH gene in Escherichia coli K-12 marks both as probable pseudogenes.
Probab=22.44 E-value=2.2e+02 Score=25.77 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=34.9
Q ss_pred EEEEecCccccchhHHHHHHHHHhhhhHHhhCCcceeEEEEecCCceeeecccccccchhhhhccccCcCCCcceEEEE
Q 031274 50 VHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFM 128 (162)
Q Consensus 50 ~~Lvs~E~~qIss~aLEAARiaankyl~k~~Gk~~f~l~Irv~P~hvlr~nkmls~AGADRlq~gMr~afGkp~g~vAr 128 (162)
+++.+.+..||-++|+|=...+++- .+ -.++.+.|| +-. |+|-|+|.|+-
T Consensus 1 ~~~~~~~~~~ie~~a~~Ql~~~a~l--------p~-v~~v~~MPD----------------~H~----G~G~pIG~v~~ 50 (356)
T TIGR03073 1 VSLIASDNTWIEGKAIQQLQTTAQL--------PG-MRRVVGMPD----------------LHP----GRGYPIGAAFF 50 (356)
T ss_pred CEEEcCCCCcccHHHHHHHHHHhcC--------CC-ccEEEECCC----------------cCC----CCCcceEEEEe
Confidence 3577888999999887766555422 11 246888988 333 67899999963
No 24
>PF15380 DUF4607: Domain of unknown function (DUF4607)
Probab=20.52 E-value=47 Score=29.25 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=26.3
Q ss_pred ecccccccchh--h-hhccccCcCCCcceEEEEEe
Q 031274 99 INKMLSCAGAD--R-LQTGMRGAFGKPQAIVFMLK 130 (162)
Q Consensus 99 ~nkmls~AGAD--R-lq~gMr~afGkp~g~vArV~ 130 (162)
|.+|++-+|+- + +|++.+++-|+|.|..|+--
T Consensus 151 eer~aa~ag~~a~pD~qs~llga~GnpvgrgaVAm 185 (265)
T PF15380_consen 151 EERMAAPAGSPAHPDVQSRLLGASGNPVGRGAVAM 185 (265)
T ss_pred hhcccccCCCcCCccccccccccccCccccceeec
Confidence 56888888872 2 89999999999999887654
Done!