RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 031274
(162 letters)
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 167
Score = 180 bits (458), Expect = 2e-59
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 4/147 (2%)
Query: 4 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSE 63
+P YR Y + + G+P KI +D+G +P V LV + +
Sbjct: 1 KPGAMYRNSSKPAYTRREYISGIPGKKIAQFDMG-NNGAGPTYPAQVELVVEKPVQIRHN 59
Query: 64 ALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQ 123
ALEAAR+A N+Y+ + R+R PFHV+R NK + A A GMR FGKP
Sbjct: 60 ALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKAAAAAAAAAAADGMRAPFGKPV 119
Query: 124 ---AIVFMLKRLFVVQSSSFLVAKKSL 147
A V +F+ + +++
Sbjct: 120 GTAARVHGANHIFIAWVNPDPNVEEAW 146
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 163
Score = 175 bits (444), Expect = 2e-57
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 4 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSE 63
+PA YR I Y + + G+P KI + +G K+K D++P + L+ E +
Sbjct: 1 KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHG 60
Query: 64 ALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKP 122
+LEA+R++ N+++ K G++ + + +R P VLR NK + AGADR+ GMR AFGK
Sbjct: 61 SLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKI 120
Query: 123 QAIV 126
Sbjct: 121 VGTA 124
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 124 bits (314), Expect = 5e-38
Identities = 67/88 (76%), Positives = 72/88 (81%)
Query: 40 KKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRI 99
K VDEFP C H+VS E E +SSEALEAARI NKYM K GKD FH+RVR+HPFHV+RI
Sbjct: 1 KAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRI 60
Query: 100 NKMLSCAGADRLQTGMRGAFGKPQAIVF 127
NKMLSCAGADRLQTGMRGAFGKPQ V
Sbjct: 61 NKMLSCAGADRLQTGMRGAFGKPQGTVA 88
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli
[TaxId: 562]}
Length = 131
Score = 29.4 bits (66), Expect = 0.11
Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 56 EKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGM 115
+ +++ +EAAR A + + K + +RV P + + G +
Sbjct: 35 GRGRLTARQIEAARRAMTRAV-----KRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEY 89
Query: 116 RGAFGKPQAIVF 127
A +P +++
Sbjct: 90 WVALIQPGKVLY 101
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus
thermophilus [TaxId: 274]}
Length = 136
Score = 28.2 bits (63), Expect = 0.29
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 56 EKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGM 115
E ++++ +EAAR+A ++ + + +R+ P + G +
Sbjct: 33 EPAWITAQQIEAARVAMVRHF-----RRGGKIFIRIFPDKPYTKKPLEVRMGKGKGNVEG 87
Query: 116 RGAFGKPQAIVF 127
A KP ++F
Sbjct: 88 YVAVVKPGRVMF 99
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 28.3 bits (61), Expect = 0.49
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 20 SRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKF 79
C D K+R +DV K+ + ++ +++ E A +A+
Sbjct: 302 ETLCSAGWDGKLRFWDVKTKE--------RITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353
Query: 80 AGKDAFHLRVRVHPFHVLRINKMLSCAGADR 110
D L+ +N+ L C DR
Sbjct: 354 GVFDVKFLKKGWRSGMGADLNESLCCVCLDR 384
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 25.3 bits (54), Expect = 4.1
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 31 IRIYDVGMKKKGVDEFPFCVHLVSWEK--ENVSSEALEAARIACNKYMAKFAGKDAFHLR 88
+ G VD H+ + + + ++ E + A I + + G+D +
Sbjct: 346 VVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGK 405
Query: 89 VRVHPFHVLRI 99
P +LR+
Sbjct: 406 QLPCPAELLRL 416
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos
taurus) [TaxId: 9913]}
Length = 527
Score = 24.7 bits (53), Expect = 6.0
Identities = 13/89 (14%), Positives = 22/89 (24%), Gaps = 5/89 (5%)
Query: 37 GMKKKGVDEFPFCVHLV----SWEKENVSSEALEAARIACNKYMAKFAGKDAFHL-RVRV 91
G+ K V C HL+ EK+ ++ + G + +
Sbjct: 86 GLPKVAVPSTIHCDHLIEAQLGGEKDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGII 145
Query: 92 HPFHVLRINKMLSCAGADRLQTGMRGAFG 120
H + T G G
Sbjct: 146 HQIILENYAYPGVLLIGTDSHTPNGGGLG 174
>d1ccwb_ c.1.19.2 (B:) Glutamate mutase, large subunit {Clostridium
cochlearium [TaxId: 1494]}
Length = 483
Score = 24.8 bits (54), Expect = 6.2
Identities = 8/72 (11%), Positives = 17/72 (23%), Gaps = 16/72 (22%)
Query: 63 EALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQ-------TGM 115
AL N+Y+ + D + H + + D +
Sbjct: 263 AALRCLEEQTNEYLKAYGYND-VFVTTVFHQW--------MGGFPQDESKAFGVIVTATT 313
Query: 116 RGAFGKPQAIVF 127
A ++
Sbjct: 314 IAALAGATKVIV 325
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.137 0.417
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 613,382
Number of extensions: 27744
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 12
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.3 bits)