BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031276
MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRAELDQNTVVAISVG
LVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG
GDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD

High Scoring Gene Products

Symbol, full name Information P value
LQY1
LOW QUANTUM YIELD OF PHOTOSYSTEM II 1 		protein from Arabidopsis thaliana 4.4e-45

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031276
        (162 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2005585 - symbol:LQY1 "LOW QUANTUM YIELD OF PH...   474  4.4e-45   1


>TAIR|locus:2005585 [details] [associations]
            symbol:LQY1 "LOW QUANTUM YIELD OF PHOTOSYSTEM II 1"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0031072 "heat shock protein binding"
            evidence=IEA] [GO:0051082 "unfolded protein binding" evidence=IEA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0003756 "protein
            disulfide isomerase activity" evidence=IDA] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0010206 "photosystem II
            repair" evidence=IMP] [GO:0006098 "pentose-phosphate shunt"
            evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0009657 "plastid organization" evidence=RCA] [GO:0010207
            "photosystem II assembly" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0035304
            "regulation of protein dephosphorylation" evidence=RCA]
            InterPro:IPR001305 PROSITE:PS51188 GO:GO:0016021 EMBL:CP002684
            GO:GO:0009570 GO:GO:0046872 GO:GO:0009535 Gene3D:2.10.230.10
            SUPFAM:SSF57938 GO:GO:0003756 GO:GO:0010206 HSSP:P08622
            EMBL:AC006434 EMBL:BT002378 EMBL:BT006547 EMBL:AK117868
            IPI:IPI00538661 RefSeq:NP_177698.1 UniGene:At.34746
            ProteinModelPortal:Q8GSJ6 SMR:Q8GSJ6 IntAct:Q8GSJ6 STRING:Q8GSJ6
            PRIDE:Q8GSJ6 EnsemblPlants:AT1G75690.1 GeneID:843903
            KEGG:ath:AT1G75690 TAIR:At1g75690 eggNOG:NOG306333
            HOGENOM:HOG000083374 InParanoid:Q8GSJ6 OMA:TQIDNAA PhylomeDB:Q8GSJ6
            ProtClustDB:PLN03165 Genevestigator:Q8GSJ6 Uniprot:Q8GSJ6
        Length = 154

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 104/167 (62%), Positives = 117/167 (70%)

Query:     4 APSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRS-SAPYPCIRAELDQNTVVAISVGLV 62
             APS  RLHSPF+ CP+N      T  S S RN RS S  YP I+AELD NTVVAISVG+ 
Sbjct:     5 APSPPRLHSPFIHCPIN-----FTPSSFSARNLRSPSTSYPRIKAELDPNTVVAISVGVA 59

Query:    63 SVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSFCMGTGSV 115
             SVA+GIGIP+FYETQIDNA         FP  G G A+K           C  C+G+G+V
Sbjct:    60 SVALGIGIPVFYETQIDNAAKRENTQPCFPCNGTG-AQK-----------CRLCVGSGNV 107

Query:   116 TVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 162
             TVELGG E+E S CINCDG GSLTCTTCQG+G+QPRYLDRREFKDDD
Sbjct:   108 TVELGGGEKEVSNCINCDGAGSLTCTTCQGSGVQPRYLDRREFKDDD 154


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      162       162   0.00079  107 3  11 22  0.49    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  150 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.66u 0.13s 16.79t   Elapsed:  00:00:01
  Total cpu time:  16.66u 0.13s 16.79t   Elapsed:  00:00:01
  Start:  Fri May 10 20:03:52 2013   End:  Fri May 10 20:03:53 2013

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