BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031276
(162 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GSJ6|LQY1_ARATH Protein disulfide-isomerase LQY1 OS=Arabidopsis thaliana GN=LQY1
PE=1 SV=1
Length = 154
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/167 (61%), Positives = 115/167 (68%), Gaps = 25/167 (14%)
Query: 4 APSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRS-SAPYPCIRAELDQNTVVAISVGLV 62
APS RLHSPF+ CP+N T S S RN RS S YP I+AELD NTVVAISVG+
Sbjct: 5 APSPPRLHSPFIHCPIN-----FTPSSFSARNLRSPSTSYPRIKAELDPNTVVAISVGVA 59
Query: 63 SVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSFCMGTGSV 115
SVA+GIGIP+FYETQIDNA FP G G + C C+G+G+V
Sbjct: 60 SVALGIGIPVFYETQIDNAAKRENTQPCFPCNGTGAQK------------CRLCVGSGNV 107
Query: 116 TVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 162
TVELGG E+E S CINCDG GSLTCTTCQG+G+QPRYLDRREFKDDD
Sbjct: 108 TVELGGGEKEVSNCINCDGAGSLTCTTCQGSGVQPRYLDRREFKDDD 154
>sp|P35191|MDJ1_YEAST DnaJ homolog 1, mitochondrial OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MDJ1 PE=1 SV=1
Length = 511
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----TCTTCQGTGIQ 149
+ CS C GTG+ TV + G + S C C+G G++ CT C G G+Q
Sbjct: 245 VSCSTCHGTGT-TVHIRGGFQMMSTCPTCNGEGTMKRPQDNCTKCHGEGVQ 294
>sp|Q5EA90|T106A_BOVIN Transmembrane protein 106A OS=Bos taurus GN=TMEM106A PE=2 SV=1
Length = 261
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 110 MGTGSVTVELGGDEREFSKCINCD---GVGSLTCTTCQGTGIQPRYLDRR 156
G+ + + G+ R F C+ C+ G G +TC TCQG+G PR L+++
Sbjct: 25 FGSKAASYSSMGNSRPFFSCVPCERAAGAGFVTCPTCQGSGEIPRELEKQ 74
>sp|Q96A25|T106A_HUMAN Transmembrane protein 106A OS=Homo sapiens GN=TMEM106A PE=2 SV=1
Length = 262
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 110 MGTGSVTVELGGDEREFSKCINCDGVGS---LTCTTCQGTGIQPRYLDRR 156
+G+ +V G + F C+ C+G +TC TCQG+G P+ L+++
Sbjct: 26 IGSKAVNYSSTGSSKSFCSCVPCEGTADASFVTCPTCQGSGKIPQELEKQ 75
>sp|P69806|PTND_ECOL6 Mannose permease IID component OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=manZ PE=3 SV=1
Length = 286
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 13 PFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPI 72
PF+ P+ V+L+ QR++ AE+D + I VGL+ G+G PI
Sbjct: 79 PFVAAPI-------LGVTLALEEQRANG------AEIDDGAINGIKVGLMGPLAGVGDPI 125
Query: 73 FYETQIDNAYDFPIFGAGQARKYSAMLPL 101
F+ T F GAG A S + PL
Sbjct: 126 FWGTVRP---VFAALGAGIAMSGSLLGPL 151
>sp|P69807|PTND_ECO57 Mannose permease IID component OS=Escherichia coli O157:H7 GN=manZ
PE=3 SV=1
Length = 286
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 13 PFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPI 72
PF+ P+ V+L+ QR++ AE+D + I VGL+ G+G PI
Sbjct: 79 PFVAAPI-------LGVTLALEEQRANG------AEIDDGAINGIKVGLMGPLAGVGDPI 125
Query: 73 FYETQIDNAYDFPIFGAGQARKYSAMLPL 101
F+ T F GAG A S + PL
Sbjct: 126 FWGTVRP---VFAALGAGIAMSGSLLGPL 151
>sp|P69805|PTND_ECOLI Mannose permease IID component OS=Escherichia coli (strain K12)
GN=manZ PE=1 SV=2
Length = 283
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 13 PFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPI 72
PF+ P+ V+L+ QR++ AE+D + I VGL+ G+G PI
Sbjct: 76 PFVAAPI-------LGVTLALEEQRANG------AEIDDGAINGIKVGLMGPLAGVGDPI 122
Query: 73 FYETQIDNAYDFPIFGAGQARKYSAMLPL 101
F+ T F GAG A S + PL
Sbjct: 123 FWGTVRP---VFAALGAGIAMSGSLLGPL 148
>sp|A7GT07|DNAJ_BACCN Chaperone protein DnaJ OS=Bacillus cereus subsp. cytotoxis (strain
NVH 391-98) GN=dnaJ PE=3 SV=1
Length = 366
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL---TCTTCQGTG 147
C +C GTG ++VE G C +C G G + CTTC GTG
Sbjct: 158 CKYCSGTGQISVEQNTPFGRIVNRQTCRHCSGTGQMIKEKCTTCHGTG 205
>sp|B7IFE0|DNAJ_THEAB Chaperone protein DnaJ OS=Thermosipho africanus (strain TCF52B)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 35 NQRSSAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARK 94
+QR+S+ RA+ ++ + + V V G IPI Y + Y+ G+ +
Sbjct: 117 DQRTSSRQKQRRAKRGEDINITVDVPFEQVFTGTTIPIEY-----DRYEVCSHCNGEGVE 171
Query: 95 YSAMLPLQWLRCSFCMGTGSVTVE----LGGDEREFSKCINCDGVGSL---TCTTCQGTG 147
+ W+ C C GTG V E LG +++ C C G G + TC C G+G
Sbjct: 172 PGSG----WVSCPKCHGTGVVREERRTFLGVIVNQYT-CNQCGGTGKIPGETCHVCGGSG 226
Query: 148 -IQPRY 152
I+ R+
Sbjct: 227 RIRKRH 232
>sp|Q601X8|DNAJ_MYCH2 Chaperone protein DnaJ OS=Mycoplasma hyopneumoniae (strain 232)
GN=dnaJ PE=3 SV=2
Length = 368
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 87 FGAGQARKYSAMLPLQWLRCSFCMG--TGSVTVELGGDEREFSKCINCDGVGS------L 138
FG Q +KYS L + + + + E+ ++ +C NC G G+
Sbjct: 108 FGGSQEQKYSRPLKGENFQAKIYISFIESILGKEISQKLTKYDQCDNCKGSGANSSSDIT 167
Query: 139 TCTTCQGTGIQPRYLD 154
TC CQG G+Q L+
Sbjct: 168 TCYNCQGRGMQTEVLN 183
>sp|C5D4U0|DNAJ_GEOSW Chaperone protein DnaJ OS=Geobacillus sp. (strain WCH70) GN=dnaJ
PE=3 SV=1
Length = 380
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 12/51 (23%)
Query: 106 CSFCMGTGSVTVELGGDEREFSKCIN------CDGVGSL---TCTTCQGTG 147
CS+C GTG ++ E F + +N C G G CTTC GTG
Sbjct: 165 CSYCHGTGQISTE---QSTPFGRIVNRRTCPYCGGTGQYIKEKCTTCGGTG 212
>sp|Q9NYW8|RBAK_HUMAN RB-associated KRAB zinc finger protein OS=Homo sapiens GN=RBAK PE=1
SV=1
Length = 714
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 9 RLHS---PFLCCPLNKLSSSATTVSLSQRNQRSSAPYPC 44
R HS P+ C K T ++L QRN PYPC
Sbjct: 337 RTHSGEKPYECSECGKTFCQKTHLTLHQRNHSGERPYPC 375
>sp|Q6HDK8|DNAJ_BACHK Chaperone protein DnaJ OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=dnaJ PE=3 SV=1
Length = 371
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL---TCTTCQGTG 147
C C G+G V+VE G C +C G G + CTTC G+G
Sbjct: 163 CKHCSGSGQVSVEQNTPFGRIVNRQACSHCSGTGQMIKEKCTTCHGSG 210
>sp|Q81LS3|DNAJ_BACAN Chaperone protein DnaJ OS=Bacillus anthracis GN=dnaJ PE=3 SV=1
Length = 371
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL---TCTTCQGTG 147
C C G+G V+VE G C +C G G + CTTC G+G
Sbjct: 163 CKHCSGSGQVSVEQNTPFGRIVNRQACSHCSGTGQMIKEKCTTCHGSG 210
>sp|C3L5R6|DNAJ_BACAC Chaperone protein DnaJ OS=Bacillus anthracis (strain CDC 684 / NRRL
3495) GN=dnaJ PE=3 SV=1
Length = 371
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL---TCTTCQGTG 147
C C G+G V+VE G C +C G G + CTTC G+G
Sbjct: 163 CKHCSGSGQVSVEQNTPFGRIVNRQACSHCSGTGQMIKEKCTTCHGSG 210
>sp|C3P8L9|DNAJ_BACAA Chaperone protein DnaJ OS=Bacillus anthracis (strain A0248) GN=dnaJ
PE=3 SV=1
Length = 371
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL---TCTTCQGTG 147
C C G+G V+VE G C +C G G + CTTC G+G
Sbjct: 163 CKHCSGSGQVSVEQNTPFGRIVNRQACSHCSGTGQMIKEKCTTCHGSG 210
>sp|Q634M8|DNAJ_BACCZ Chaperone protein DnaJ OS=Bacillus cereus (strain ZK / E33L)
GN=dnaJ PE=3 SV=1
Length = 371
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL---TCTTCQGTG 147
C C G+G V+VE G C +C G G + CTTC G+G
Sbjct: 163 CKHCSGSGQVSVEQNTPFGRIVNRQACSHCSGTGQMIKEKCTTCHGSG 210
>sp|C1ESK7|DNAJ_BACC3 Chaperone protein DnaJ OS=Bacillus cereus (strain 03BB102) GN=dnaJ
PE=3 SV=1
Length = 371
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL---TCTTCQGTG 147
C C G+G V+VE G C +C G G + CTTC G+G
Sbjct: 163 CKHCSGSGQVSVEQNTPFGRIVNRQACSHCSGTGQMIKEKCTTCHGSG 210
>sp|B7JN38|DNAJ_BACC0 Chaperone protein DnaJ OS=Bacillus cereus (strain AH820) GN=dnaJ
PE=3 SV=1
Length = 371
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL---TCTTCQGTG 147
C C G+G V+VE G C +C G G + CTTC G+G
Sbjct: 163 CKHCSGSGQVSVEQNTPFGRIVNRQACSHCSGTGQMIKEKCTTCHGSG 210
>sp|Q9KWS6|DNAJ_BACTR Chaperone protein DnaJ OS=Bacillus thermoglucosidasius GN=dnaJ PE=3
SV=1
Length = 380
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 12/51 (23%)
Query: 106 CSFCMGTGSVTVELGGDEREFSKCIN------CDGVGSL---TCTTCQGTG 147
CS+C GTG ++ E F + +N C G G CTTC GTG
Sbjct: 165 CSYCHGTGQISTE---QSTPFGRIVNRRTCPYCGGTGQYIKERCTTCGGTG 212
>sp|Q2YT48|DNAJ_STAAB Chaperone protein DnaJ OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=dnaJ PE=3 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVG---SLTCTTCQGTGIQPR 151
CS+C G G V VE G R C C+G G C TC G G + +
Sbjct: 166 CSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENK 217
>sp|P63972|DNAJ_STAAW Chaperone protein DnaJ OS=Staphylococcus aureus (strain MW2)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVG---SLTCTTCQGTGIQPR 151
CS+C G G V VE G R C C+G G C TC G G + +
Sbjct: 166 CSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENK 217
>sp|A8Z4B8|DNAJ_STAAT Chaperone protein DnaJ OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=dnaJ PE=3 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVG---SLTCTTCQGTGIQPR 151
CS+C G G V VE G R C C+G G C TC G G + +
Sbjct: 166 CSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENK 217
>sp|Q6G8Y8|DNAJ_STAAS Chaperone protein DnaJ OS=Staphylococcus aureus (strain MSSA476)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVG---SLTCTTCQGTGIQPR 151
CS+C G G V VE G R C C+G G C TC G G + +
Sbjct: 166 CSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENK 217
>sp|Q6GGC1|DNAJ_STAAR Chaperone protein DnaJ OS=Staphylococcus aureus (strain MRSA252)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVG---SLTCTTCQGTGIQPR 151
CS+C G G V VE G R C C+G G C TC G G + +
Sbjct: 166 CSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENK 217
>sp|P63971|DNAJ_STAAN Chaperone protein DnaJ OS=Staphylococcus aureus (strain N315)
GN=dnaJ PE=1 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVG---SLTCTTCQGTGIQPR 151
CS+C G G V VE G R C C+G G C TC G G + +
Sbjct: 166 CSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENK 217
>sp|P63970|DNAJ_STAAM Chaperone protein DnaJ OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=dnaJ PE=1 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVG---SLTCTTCQGTGIQPR 151
CS+C G G V VE G R C C+G G C TC G G + +
Sbjct: 166 CSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENK 217
>sp|A6QHC2|DNAJ_STAAE Chaperone protein DnaJ OS=Staphylococcus aureus (strain Newman)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVG---SLTCTTCQGTGIQPR 151
CS+C G G V VE G R C C+G G C TC G G + +
Sbjct: 166 CSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENK 217
>sp|Q5HFI1|DNAJ_STAAC Chaperone protein DnaJ OS=Staphylococcus aureus (strain COL)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVG---SLTCTTCQGTGIQPR 151
CS+C G G V VE G R C C+G G C TC G G + +
Sbjct: 166 CSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENK 217
>sp|A5ITA7|DNAJ_STAA9 Chaperone protein DnaJ OS=Staphylococcus aureus (strain JH9)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVG---SLTCTTCQGTGIQPR 151
CS+C G G V VE G R C C+G G C TC G G + +
Sbjct: 166 CSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENK 217
>sp|Q2FXZ3|DNAJ_STAA8 Chaperone protein DnaJ OS=Staphylococcus aureus (strain NCTC 8325)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVG---SLTCTTCQGTGIQPR 151
CS+C G G V VE G R C C+G G C TC G G + +
Sbjct: 166 CSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENK 217
>sp|Q2FGE4|DNAJ_STAA3 Chaperone protein DnaJ OS=Staphylococcus aureus (strain USA300)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVG---SLTCTTCQGTGIQPR 151
CS+C G G V VE G R C C+G G C TC G G + +
Sbjct: 166 CSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENK 217
>sp|A6U251|DNAJ_STAA2 Chaperone protein DnaJ OS=Staphylococcus aureus (strain JH1)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVG---SLTCTTCQGTGIQPR 151
CS+C G G V VE G R C C+G G C TC G G + +
Sbjct: 166 CSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENK 217
>sp|A7X2Y0|DNAJ_STAA1 Chaperone protein DnaJ OS=Staphylococcus aureus (strain Mu3 / ATCC
700698) GN=dnaJ PE=3 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVG---SLTCTTCQGTGIQPR 151
CS+C G G V VE G R C C+G G C TC G G + +
Sbjct: 166 CSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENK 217
>sp|A9VHU0|DNAJ_BACWK Chaperone protein DnaJ OS=Bacillus weihenstephanensis (strain
KBAB4) GN=dnaJ PE=3 SV=1
Length = 368
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL---TCTTCQGTG 147
C C G+G V+VE G C +C G G + CTTC G+G
Sbjct: 160 CKHCSGSGQVSVEQNTPFGRIVNRQACGHCSGTGQMIKEKCTTCHGSG 207
>sp|P45555|DNAJ_STAAU Chaperone protein DnaJ OS=Staphylococcus aureus GN=dnaJ PE=3 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVG---SLTCTTCQGTGIQPR 151
CS+C G G V VE G R C C+G G C TC G G + +
Sbjct: 166 CSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENK 217
>sp|Q8CP18|DNAJ_STAES Chaperone protein DnaJ OS=Staphylococcus epidermidis (strain ATCC
12228) GN=dnaJ PE=3 SV=1
Length = 373
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVG---SLTCTTCQGTGIQPR 151
CS+C G G V+VE G R C C+G G C TC+G G + +
Sbjct: 160 CSYCNGAGRVSVEQNTILGRVRTEQVCPKCEGSGQEFEEPCPTCKGKGTENK 211
>sp|Q5HNW7|DNAJ_STAEQ Chaperone protein DnaJ OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=dnaJ PE=3 SV=1
Length = 373
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVG---SLTCTTCQGTGIQPR 151
CS+C G G V+VE G R C C+G G C TC+G G + +
Sbjct: 160 CSYCNGAGRVSVEQNTILGRVRTEQVCPKCEGSGQEFEEPCPTCKGKGTENK 211
>sp|Q7N295|HUTU_PHOLL Urocanate hydratase OS=Photorhabdus luminescens subsp. laumondii
(strain TT01) GN=hutU PE=3 SV=1
Length = 559
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 27/111 (24%)
Query: 30 SLSQRNQRS-SAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPIF----------YETQI 78
S + QR+ SAP I+A + + V + + GIP+F YE +
Sbjct: 281 SWEEYRQRAISAPEEVIKA---AKSSMVEHVKAMLIFQQQGIPVFDYGNNIRQMAYEVGV 337
Query: 79 DNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVT-VELGGDEREFSK 128
+NA+DFP F +P ++R FC G G V L GD ++ K
Sbjct: 338 ENAFDFPGF-----------VP-TYIRPLFCRGIGPFRWVALSGDPQDIYK 376
>sp|A6LJ63|DNAJ_THEM4 Chaperone protein DnaJ OS=Thermosipho melanesiensis (strain BI429 /
DSM 12029) GN=dnaJ PE=3 SV=1
Length = 373
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 35 NQRSSAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARK 94
+QR+S+ ++ +++ V + G+ IP+ Y + Y+ G+ +
Sbjct: 112 DQRTSSRKRTKTPRKGEDINISVDVSFEELFTGVKIPLEY-----DRYEVCEHCHGEGVE 166
Query: 95 YSAMLPLQWLRCSFCMGTGSVTVE----LGGDEREFSKCINCDGVGSL---TCTTCQGTG 147
+ W+ C C GTG+V E LG +++ C C G G + +C C GTG
Sbjct: 167 PGS----GWVTCPKCHGTGTVREERRTFLGVIVNQYT-CNQCGGTGKIPGESCRVCGGTG 221
Query: 148 -IQPRY 152
I+ R+
Sbjct: 222 RIRKRH 227
>sp|B9IY80|DNAJ_BACCQ Chaperone protein DnaJ OS=Bacillus cereus (strain Q1) GN=dnaJ PE=3
SV=1
Length = 371
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL---TCTTCQGTG 147
C C G+G V+VE G C +C G G + CTTC G+G
Sbjct: 163 CKHCSGSGQVSVEQNTPFGRIVNRQACGHCSGTGQIIKEKCTTCHGSG 210
>sp|B7HPL2|DNAJ_BACC7 Chaperone protein DnaJ OS=Bacillus cereus (strain AH187) GN=dnaJ
PE=3 SV=1
Length = 371
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL---TCTTCQGTG 147
C C G+G V+VE G C +C G G + CTTC G+G
Sbjct: 163 CKHCSGSGQVSVEQNTPFGRIVNRQACGHCSGTGQIIKEKCTTCHGSG 210
>sp|Q730M2|DNAJ_BACC1 Chaperone protein DnaJ OS=Bacillus cereus (strain ATCC 10987)
GN=dnaJ PE=3 SV=1
Length = 371
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL---TCTTCQGTG 147
C C G+G V+VE G C +C G G + CTTC G+G
Sbjct: 163 CKHCSGSGQVSVEQNTPFGRIVNRQACGHCSGTGQIIKEKCTTCHGSG 210
>sp|B7HCT9|DNAJ_BACC4 Chaperone protein DnaJ OS=Bacillus cereus (strain B4264) GN=dnaJ
PE=3 SV=1
Length = 371
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL---TCTTCQGTG 147
C C G+G V+VE G C +C G G + CTTC G+G
Sbjct: 163 CKHCSGSGQVSVEQNTPFGRIVNRQACGHCSGTGQIIKEKCTTCHGSG 210
>sp|B7IYG6|DNAJ_BACC2 Chaperone protein DnaJ OS=Bacillus cereus (strain G9842) GN=dnaJ
PE=3 SV=1
Length = 371
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL---TCTTCQGTG 147
C C G+G V+VE G C +C G G + CTTC G+G
Sbjct: 163 CKHCSGSGQVSVEQNTPFGRIVNRQACGHCSGTGQIIKEKCTTCHGSG 210
>sp|Q5YNI2|DNAJ2_NOCFA Chaperone protein DnaJ 2 OS=Nocardia farcinica (strain IFM 10152)
GN=dnaJ2 PE=3 SV=1
Length = 385
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 106 CSFCMGTGSVTVELGGDEREFSK-CINCDGVGSLT---CTTCQGTGIQPR 151
C C GTG V+ G FS+ C C G GS+ C C G+GIQ R
Sbjct: 185 CPICNGTGVVSRNQGA--FGFSEPCDGCRGTGSIIDDPCVDCHGSGIQNR 232
>sp|Q8BQC8|RBAK_MOUSE RB-associated KRAB zinc finger protein OS=Mus musculus GN=Rbak PE=1
SV=1
Length = 711
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 9 RLHS---PFLCCPLNKLSSSATTVSLSQRNQRSSAPYPC 44
R HS P+ C K T ++L QRN PYPC
Sbjct: 334 RTHSGEKPYECSECGKSFCQKTHLTLHQRNHSGERPYPC 372
>sp|B0RVU1|DNAJ_XANCB Chaperone protein DnaJ OS=Xanthomonas campestris pv. campestris
(strain B100) GN=dnaJ PE=3 SV=1
Length = 376
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 106 CSFCMGTGSVTVELGGDEREFSKCINCDGVGSLT---CTTCQGTG 147
C+ C G G V ++ G + S C +CDG G+L C TC G G
Sbjct: 161 CATCHGRGQVRIQRGIFAMQQS-CPHCDGRGTLIQNPCKTCHGAG 204
>sp|Q5BK83|T106A_RAT Transmembrane protein 106A OS=Rattus norvegicus GN=Tmem106a PE=2
SV=1
Length = 261
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 121 GDEREFSKCINCDGVGS---LTCTTCQGTGIQPRYLDRR 156
G+ + C+ C+ S +TC TCQG G P+ L+++
Sbjct: 36 GNRKPSHSCVPCEKAASTSFVTCPTCQGNGEIPQELEKQ 74
>sp|Q8PAK8|DNAJ_XANCP Chaperone protein DnaJ OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=dnaJ PE=3
SV=1
Length = 376
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 106 CSFCMGTGSVTVELGGDEREFSKCINCDGVGSLT---CTTCQGTG 147
C+ C G G V ++ G + S C +CDG G+L C TC G G
Sbjct: 161 CATCHGRGQVRIQRGIFAMQQS-CPHCDGRGTLIQNPCKTCHGAG 204
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,529,674
Number of Sequences: 539616
Number of extensions: 2312009
Number of successful extensions: 6511
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 6416
Number of HSP's gapped (non-prelim): 209
length of query: 162
length of database: 191,569,459
effective HSP length: 108
effective length of query: 54
effective length of database: 133,290,931
effective search space: 7197710274
effective search space used: 7197710274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)