Query 031276
Match_columns 162
No_of_seqs 207 out of 961
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 11:48:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03165 chaperone protein dna 99.9 1.1E-25 2.4E-30 170.7 6.6 110 48-162 2-111 (111)
2 COG0484 DnaJ DnaJ-class molecu 99.8 7.5E-19 1.6E-23 156.0 7.5 91 52-151 117-211 (371)
3 PRK14279 chaperone protein Dna 99.6 5.3E-15 1.2E-19 131.4 7.4 91 50-150 146-239 (392)
4 PRK14284 chaperone protein Dna 99.6 7.7E-15 1.7E-19 130.1 7.5 90 51-150 132-224 (391)
5 PRK14298 chaperone protein Dna 99.6 8.5E-15 1.9E-19 129.5 7.6 91 51-150 115-211 (377)
6 PRK14286 chaperone protein Dna 99.6 7.3E-15 1.6E-19 129.6 7.2 91 51-151 124-217 (372)
7 PRK14282 chaperone protein Dna 99.5 1.2E-14 2.6E-19 127.8 8.3 92 51-151 126-223 (369)
8 PRK14295 chaperone protein Dna 99.5 8.8E-15 1.9E-19 129.9 7.3 92 50-151 139-233 (389)
9 PRK14278 chaperone protein Dna 99.5 1.4E-14 3.1E-19 128.0 7.9 91 51-150 113-209 (378)
10 PRK14285 chaperone protein Dna 99.5 1.1E-14 2.5E-19 128.1 7.1 90 51-150 120-212 (365)
11 PRK14276 chaperone protein Dna 99.5 1.6E-14 3.4E-19 127.7 7.5 91 51-150 120-216 (380)
12 PRK14280 chaperone protein Dna 99.5 1.9E-14 4.1E-19 127.1 7.9 92 50-150 116-213 (376)
13 PRK14301 chaperone protein Dna 99.5 1.3E-14 2.7E-19 128.1 6.8 90 51-150 118-210 (373)
14 PRK14296 chaperone protein Dna 99.5 1.6E-14 3.5E-19 127.6 6.9 91 51-150 123-219 (372)
15 PRK14300 chaperone protein Dna 99.5 2.6E-14 5.5E-19 126.0 7.6 91 51-151 119-212 (372)
16 PRK10767 chaperone protein Dna 99.5 2.7E-14 5.9E-19 125.5 7.6 92 50-151 115-209 (371)
17 PRK14297 chaperone protein Dna 99.5 3.8E-14 8.3E-19 125.1 8.0 91 51-150 122-218 (380)
18 PRK14294 chaperone protein Dna 99.5 3.9E-14 8.5E-19 124.5 7.6 91 50-150 117-210 (366)
19 PRK14287 chaperone protein Dna 99.5 5.2E-14 1.1E-18 124.2 8.0 92 50-150 111-208 (371)
20 PRK14291 chaperone protein Dna 99.5 4.4E-14 9.4E-19 125.0 7.4 90 51-150 130-221 (382)
21 PRK14288 chaperone protein Dna 99.5 3.7E-14 8E-19 125.0 6.6 89 51-150 114-205 (369)
22 PRK14277 chaperone protein Dna 99.5 6.9E-14 1.5E-18 123.8 7.9 91 51-150 129-225 (386)
23 PRK14281 chaperone protein Dna 99.5 6.1E-14 1.3E-18 124.7 7.6 91 51-151 137-233 (397)
24 TIGR02349 DnaJ_bact chaperone 99.5 8.6E-14 1.9E-18 121.3 7.6 92 51-151 117-214 (354)
25 PRK14289 chaperone protein Dna 99.4 1.6E-13 3.4E-18 121.4 7.3 92 51-151 128-225 (386)
26 PRK14283 chaperone protein Dna 99.4 4.5E-13 9.7E-18 118.3 7.5 92 51-151 120-217 (378)
27 PRK14290 chaperone protein Dna 99.4 5.9E-13 1.3E-17 117.1 8.1 92 50-151 122-219 (365)
28 PRK14293 chaperone protein Dna 99.4 5E-13 1.1E-17 117.9 7.2 92 51-151 117-214 (374)
29 PTZ00037 DnaJ_C chaperone prot 99.4 5E-13 1.1E-17 120.3 7.2 91 51-151 124-222 (421)
30 PRK14292 chaperone protein Dna 99.4 1.3E-12 2.9E-17 114.8 7.4 91 51-150 113-210 (371)
31 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.3 1E-11 2.3E-16 85.3 5.7 58 84-147 2-66 (66)
32 KOG0712 Molecular chaperone (D 98.8 4.6E-09 1E-13 92.8 5.2 91 50-150 100-199 (337)
33 KOG2813 Predicted molecular ch 98.7 6.4E-09 1.4E-13 92.1 2.2 88 65-153 172-272 (406)
34 KOG0715 Molecular chaperone (D 98.4 9.1E-08 2E-12 82.6 1.2 92 50-151 137-231 (288)
35 KOG2813 Predicted molecular ch 98.0 2E-06 4.4E-11 76.4 1.6 62 89-151 185-259 (406)
36 COG1107 Archaea-specific RecJ- 97.9 6.7E-06 1.5E-10 77.7 2.6 65 82-153 4-84 (715)
37 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.7 2.3E-05 5E-10 53.7 2.9 39 106-150 1-54 (66)
38 PLN03165 chaperone protein dna 97.6 9.9E-05 2.1E-09 56.3 4.8 44 82-138 43-98 (111)
39 COG0484 DnaJ DnaJ-class molecu 97.4 8.5E-05 1.8E-09 66.8 2.3 42 103-150 142-196 (371)
40 PRK14279 chaperone protein Dna 96.9 0.00052 1.1E-08 61.5 1.9 42 103-150 173-225 (392)
41 PRK14296 chaperone protein Dna 96.8 0.00068 1.5E-08 60.3 2.0 42 103-150 149-205 (372)
42 PRK14284 chaperone protein Dna 96.7 0.00093 2E-08 59.7 2.2 41 103-149 158-209 (391)
43 PRK14300 chaperone protein Dna 96.6 0.001 2.2E-08 59.1 1.8 42 103-150 145-197 (372)
44 PRK14298 chaperone protein Dna 96.6 0.0012 2.6E-08 58.9 2.2 42 103-150 141-197 (377)
45 KOG2824 Glutaredoxin-related p 96.6 0.003 6.6E-08 55.0 4.6 50 93-144 231-280 (281)
46 PRK10767 chaperone protein Dna 96.6 0.0012 2.6E-08 58.4 2.0 42 103-150 142-194 (371)
47 PRK14285 chaperone protein Dna 96.6 0.001 2.2E-08 59.0 1.5 42 103-150 146-198 (365)
48 PRK14286 chaperone protein Dna 96.6 0.0012 2.5E-08 58.8 1.9 42 103-150 150-202 (372)
49 COG1107 Archaea-specific RecJ- 96.5 0.0019 4.1E-08 61.5 3.3 47 104-157 3-73 (715)
50 PRK14301 chaperone protein Dna 96.5 0.0012 2.5E-08 58.8 1.8 41 104-150 145-196 (373)
51 PRK14278 chaperone protein Dna 96.5 0.0014 2.9E-08 58.5 2.1 42 103-150 139-195 (378)
52 PRK14297 chaperone protein Dna 96.5 0.0013 2.8E-08 58.5 1.8 41 104-150 149-204 (380)
53 PRK14282 chaperone protein Dna 96.5 0.0013 2.9E-08 58.2 1.8 41 104-150 153-208 (369)
54 PRK14295 chaperone protein Dna 96.4 0.0015 3.2E-08 58.5 1.7 41 104-150 167-218 (389)
55 PRK14276 chaperone protein Dna 96.4 0.0016 3.4E-08 58.0 1.9 42 103-150 146-202 (380)
56 PTZ00037 DnaJ_C chaperone prot 96.4 0.002 4.3E-08 58.6 2.4 41 104-151 151-206 (421)
57 PRK14280 chaperone protein Dna 96.4 0.0015 3.2E-08 58.1 1.5 42 103-150 143-199 (376)
58 PRK14287 chaperone protein Dna 96.3 0.0016 3.6E-08 57.8 1.4 41 104-150 139-194 (371)
59 PRK14294 chaperone protein Dna 96.3 0.0024 5.1E-08 56.6 2.1 41 104-150 145-196 (366)
60 PRK14277 chaperone protein Dna 96.3 0.0022 4.7E-08 57.3 1.8 42 103-150 155-211 (386)
61 PRK14288 chaperone protein Dna 96.2 0.0026 5.5E-08 56.6 2.1 40 104-150 141-191 (369)
62 TIGR02642 phage_xxxx uncharact 96.2 0.0026 5.6E-08 52.4 2.0 13 104-116 100-112 (186)
63 PRK14289 chaperone protein Dna 96.1 0.0023 5E-08 57.0 1.4 42 103-150 154-210 (386)
64 PRK14291 chaperone protein Dna 96.1 0.0029 6.4E-08 56.3 1.9 41 103-149 156-207 (382)
65 TIGR02349 DnaJ_bact chaperone 96.1 0.0029 6.2E-08 55.5 1.7 41 104-150 144-199 (354)
66 PRK14290 chaperone protein Dna 96.1 0.0037 8E-08 55.3 2.4 40 104-150 150-204 (365)
67 TIGR02642 phage_xxxx uncharact 96.0 0.0041 8.9E-08 51.3 2.3 24 126-149 99-127 (186)
68 cd03031 GRX_GRX_like Glutaredo 96.0 0.012 2.5E-07 46.6 4.5 48 92-140 100-147 (147)
69 PRK14293 chaperone protein Dna 96.0 0.0053 1.1E-07 54.5 2.8 41 103-149 143-198 (374)
70 PRK14283 chaperone protein Dna 96.0 0.0036 7.9E-08 55.6 1.8 41 103-149 146-201 (378)
71 PRK14281 chaperone protein Dna 95.8 0.0051 1.1E-07 55.2 2.1 40 104-150 164-218 (397)
72 PRK14292 chaperone protein Dna 95.6 0.0058 1.3E-07 54.1 1.8 43 103-150 139-196 (371)
73 PF07092 DUF1356: Protein of u 89.6 0.17 3.6E-06 43.5 1.3 29 125-153 26-54 (238)
74 TIGR00630 uvra excinuclease AB 85.0 0.74 1.6E-05 46.0 2.9 39 104-153 737-775 (924)
75 PRK00349 uvrA excinuclease ABC 80.1 1.4 3.1E-05 44.2 2.8 15 105-119 740-754 (943)
76 PF07092 DUF1356: Protein of u 76.5 1 2.2E-05 38.7 0.6 21 99-119 34-54 (238)
77 KOG0712 Molecular chaperone (D 75.5 1.8 3.8E-05 38.9 1.9 42 101-149 125-182 (337)
78 TIGR00630 uvra excinuclease AB 75.2 1.5 3.4E-05 43.8 1.5 13 105-117 276-288 (924)
79 cd03031 GRX_GRX_like Glutaredo 72.8 2.8 6.1E-05 33.1 2.2 11 139-149 135-145 (147)
80 COG0178 UvrA Excinuclease ATPa 72.4 3.8 8.2E-05 41.2 3.4 30 105-134 732-761 (935)
81 PRK00635 excinuclease ABC subu 72.2 2.9 6.3E-05 44.8 2.7 31 105-135 1609-1639(1809)
82 TIGR03655 anti_R_Lar restricti 68.6 8.1 0.00017 25.1 3.4 34 104-137 2-37 (53)
83 KOG2824 Glutaredoxin-related p 68.4 3.6 7.8E-05 36.2 2.1 25 127-151 230-254 (281)
84 PRK00349 uvrA excinuclease ABC 67.6 2.9 6.3E-05 42.0 1.6 28 127-154 739-778 (943)
85 COG1198 PriA Primosomal protei 65.8 4.9 0.00011 39.5 2.7 91 39-146 383-484 (730)
86 PF14353 CpXC: CpXC protein 63.3 11 0.00025 28.1 3.7 35 104-138 2-50 (128)
87 KOG0715 Molecular chaperone (D 62.3 4.2 9E-05 35.4 1.3 44 103-152 164-218 (288)
88 PF13719 zinc_ribbon_5: zinc-r 61.7 4 8.7E-05 25.0 0.8 30 104-133 3-32 (37)
89 PF08273 Prim_Zn_Ribbon: Zinc- 57.7 9 0.00019 24.3 1.9 31 104-134 4-34 (40)
90 PRK00635 excinuclease ABC subu 56.5 5.2 0.00011 43.0 1.1 26 128-153 1609-1646(1809)
91 PF14354 Lar_restr_allev: Rest 55.2 17 0.00037 23.7 3.1 16 103-119 3-18 (61)
92 TIGR00595 priA primosomal prot 52.3 15 0.00032 34.2 3.3 39 104-147 223-263 (505)
93 PF03589 Antiterm: Antitermina 51.7 5.7 0.00012 29.3 0.3 35 104-138 6-44 (95)
94 PRK14873 primosome assembly pr 49.3 10 0.00022 36.7 1.8 92 38-147 326-432 (665)
95 PF01556 CTDII: DnaJ C termina 48.2 7 0.00015 27.1 0.4 19 54-72 3-21 (81)
96 PF08792 A2L_zn_ribbon: A2L zi 48.0 25 0.00055 21.2 2.8 25 104-133 4-28 (33)
97 PF14369 zf-RING_3: zinc-finge 45.7 19 0.0004 22.0 1.9 10 105-115 23-32 (35)
98 COG0178 UvrA Excinuclease ATPa 44.6 13 0.00027 37.6 1.6 28 127-154 731-770 (935)
99 PRK05580 primosome assembly pr 42.3 24 0.00052 34.0 3.1 38 104-146 391-430 (679)
100 TIGR02098 MJ0042_CXXC MJ0042 f 41.3 14 0.00031 22.0 0.9 31 104-134 3-33 (38)
101 PRK10266 curved DNA-binding pr 37.0 23 0.0005 30.6 1.9 29 50-78 117-145 (306)
102 PRK14299 chaperone protein Dna 35.6 18 0.00039 31.1 1.0 26 51-76 130-155 (291)
103 PRK12775 putative trifunctiona 31.4 45 0.00098 33.7 3.2 58 101-161 794-859 (1006)
104 PF13453 zf-TFIIB: Transcripti 30.1 70 0.0015 19.5 2.8 6 106-111 2-7 (41)
105 TIGR00757 RNaseEG ribonuclease 29.8 27 0.00059 32.0 1.2 14 104-117 391-404 (414)
106 PF13717 zinc_ribbon_4: zinc-r 28.3 30 0.00065 21.0 0.9 13 104-116 3-15 (36)
107 PRK04023 DNA polymerase II lar 27.9 37 0.00081 35.0 1.9 33 104-146 639-672 (1121)
108 PF07295 DUF1451: Protein of u 27.3 67 0.0015 25.5 2.9 13 99-111 108-120 (146)
109 PRK00488 pheS phenylalanyl-tRN 26.9 33 0.00071 30.9 1.2 20 126-148 260-279 (339)
110 smart00778 Prim_Zn_Ribbon Zinc 26.6 60 0.0013 20.2 2.0 29 104-133 4-32 (37)
111 PF08271 TF_Zn_Ribbon: TFIIB z 26.0 58 0.0013 20.1 1.9 9 105-113 2-10 (43)
112 COG5082 AIR1 Arginine methyltr 25.2 78 0.0017 26.5 3.0 16 76-91 56-71 (190)
113 PRK03564 formate dehydrogenase 25.2 93 0.002 27.7 3.7 7 139-145 254-260 (309)
114 PRK14714 DNA polymerase II lar 23.8 64 0.0014 34.1 2.7 32 104-145 680-717 (1337)
115 TIGR01562 FdhE formate dehydro 23.2 71 0.0015 28.3 2.6 8 105-112 186-193 (305)
116 TIGR00757 RNaseEG ribonuclease 22.8 38 0.00082 31.0 0.8 14 125-138 389-402 (414)
117 PF09723 Zn-ribbon_8: Zinc rib 22.3 91 0.002 19.3 2.3 29 104-134 6-34 (42)
118 COG1327 Predicted transcriptio 21.2 68 0.0015 26.1 1.9 31 105-135 2-37 (156)
119 PF14803 Nudix_N_2: Nudix N-te 20.6 91 0.002 18.9 1.9 28 105-133 2-29 (34)
120 PF01096 TFIIS_C: Transcriptio 20.3 1.6E+02 0.0035 17.9 3.1 29 105-133 2-35 (39)
No 1
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.92 E-value=1.1e-25 Score=170.73 Aligned_cols=110 Identities=70% Similarity=1.161 Sum_probs=94.9
Q ss_pred ccCcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCcccee
Q 031276 48 ELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFS 127 (162)
Q Consensus 48 ~ld~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~ 127 (162)
||||||.++|.+....+|+|+++||+|+.++++++.. .+...|.. |.|+|..+|+.|+|+|++...+++.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~----~~~v~C~~-C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~ 76 (111)
T PLN03165 2 DLDQNTIVAISVGVVSIAVGIGIPVFYETQIDNAAKR----ENTQPCFP-CSGTGAQVCRFCVGSGNVTVELGGGEKEVS 76 (111)
T ss_pred ccchhhhhhhhhhhhhhhhccCCcEEEEEeeehhhhh----ccCCCCCC-CCCCCCcCCCCCcCcCeEEEEeCCcEEEEE
Confidence 8999999999999999999999999999999975441 12234444 666666799999999999876645566788
Q ss_pred eCCCCCCCceecCCCCCCceeeCcccccccccCCC
Q 031276 128 KCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 162 (162)
Q Consensus 128 ~C~~C~G~G~v~C~~C~G~G~v~~~l~~r~~~~~~ 162 (162)
+|+.|+|+|+..|+.|+|.|++++||++|+|||||
T Consensus 77 ~C~~C~G~Gk~~C~~C~G~G~~~~~~~~~~~~~~~ 111 (111)
T PLN03165 77 KCINCDGAGSLTCTTCQGSGIQPRYLDRREFKDDD 111 (111)
T ss_pred ECCCCCCcceeeCCCCCCCEEEeeeecccccCCCC
Confidence 99999999999999999999999999999999998
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=7.5e-19 Score=156.01 Aligned_cols=91 Identities=21% Similarity=0.400 Sum_probs=82.8
Q ss_pred ccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC-CCccceeeCC
Q 031276 52 NTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG-GDEREFSKCI 130 (162)
Q Consensus 52 ~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~-g~~~~~~~C~ 130 (162)
+.++.|+|+|+||++|++++|.|.+++.| ..|+|+|++ .|+.+.+|++|+|+|+++..++ |.++.+++|+
T Consensus 117 Dl~~~l~isleEa~~G~~~~i~~~~~~~C---~~C~GsGak------~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~ 187 (371)
T COG0484 117 DLRYNLEITLEEAVFGVKKEIRVTRSVTC---STCHGSGAK------PGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCP 187 (371)
T ss_pred ceEEEEEeEhhhhccCceeeEecceeeEC---CcCCCCCCC------CCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECC
Confidence 44889999999999999999999999999 999999997 7888999999999999887653 6678899999
Q ss_pred CCCCCcee---cCCCCCCceeeCc
Q 031276 131 NCDGVGSL---TCTTCQGTGIQPR 151 (162)
Q Consensus 131 ~C~G~G~v---~C~~C~G~G~v~~ 151 (162)
+|+|+|++ +|++|+|.|++..
T Consensus 188 ~C~G~G~~i~~pC~~C~G~G~v~~ 211 (371)
T COG0484 188 TCNGTGKIIKDPCGKCKGKGRVKK 211 (371)
T ss_pred CCccceeECCCCCCCCCCCCeEee
Confidence 99999999 8999999997643
No 3
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=5.3e-15 Score=131.36 Aligned_cols=91 Identities=23% Similarity=0.499 Sum_probs=82.0
Q ss_pred CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeC
Q 031276 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKC 129 (162)
Q Consensus 50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C 129 (162)
.++..+.|.|+|+|++.|..+++.+++.+.| ..|+|+|+. .+....+|+.|+|+|++...+ +.++...+|
T Consensus 146 g~di~~~l~ltLee~~~G~~~~v~~~~~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~-g~~~~~~~C 215 (392)
T PRK14279 146 GNDLETETTLDFVEAAKGVTMPLRLTSPAPC---TTCHGSGAR------PGTSPKVCPTCNGSGVISRNQ-GAFGFSEPC 215 (392)
T ss_pred CCCeEEEEEEEHHHHhCCeEEEEeeeccccC---CCCcccccc------CCCCCCCCCCCcceEEEEEEe-cceEEEEec
Confidence 3467889999999999999999999999999 999999986 566678999999999998776 666788999
Q ss_pred CCCCCCcee---cCCCCCCceeeC
Q 031276 130 INCDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 130 ~~C~G~G~v---~C~~C~G~G~v~ 150 (162)
+.|+|+|++ +|..|+|.|.+.
T Consensus 216 ~~C~G~G~~i~~~C~~C~G~g~v~ 239 (392)
T PRK14279 216 TDCRGTGSIIEDPCEECKGTGVTT 239 (392)
T ss_pred CCCCceeEEeCCcCCCCCCCeEEE
Confidence 999999999 899999999874
No 4
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=7.7e-15 Score=130.07 Aligned_cols=90 Identities=23% Similarity=0.403 Sum_probs=81.8
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCC
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCI 130 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~ 130 (162)
++..+.|.|+|+|++.|..+++.+.+.+.| ..|+|+|+. .+....+|+.|+|+|.+...+ |.++...+|+
T Consensus 132 ~d~~~~l~vslee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~v~~~~-G~~~~~~~C~ 201 (391)
T PRK14284 132 ASKKVHITLSFEEAAKGVEKELLVSGYKSC---DACSGSGAN------SSQGIKVCDRCKGSGQVVQSR-GFFSMASTCP 201 (391)
T ss_pred CCeEEEEEEEHHHHhCCeeEEEEEeeeccC---CCCcccccC------CCCCCeecCccCCeeEEEEEe-ceEEEEEECC
Confidence 456899999999999999999999999999 999999986 677789999999999998776 6777888999
Q ss_pred CCCCCcee---cCCCCCCceeeC
Q 031276 131 NCDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 131 ~C~G~G~v---~C~~C~G~G~v~ 150 (162)
.|+|.|++ +|+.|+|.|++.
T Consensus 202 ~C~G~G~~~~~~C~~C~G~g~v~ 224 (391)
T PRK14284 202 ECGGEGRVITDPCSVCRGQGRIK 224 (391)
T ss_pred CCCCCCcccCCcCCCCCCcceec
Confidence 99999998 899999999873
No 5
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=8.5e-15 Score=129.48 Aligned_cols=91 Identities=26% Similarity=0.410 Sum_probs=81.4
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS 127 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~ 127 (162)
++..+.|.|+|+|++.|..+++.+++.+.| ..|+|+|++ .+....+|+.|+|+|++...++ |.++...
T Consensus 115 ~di~~~l~vslee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~ 185 (377)
T PRK14298 115 SDLRYDLYITLEEAAFGVRKDIDVPRAERC---STCSGTGAK------PGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTT 185 (377)
T ss_pred CCEEEEEEEEHHHhhCCeEEEEEEEeeccC---CCCCCCccc------CCCCCCcCCCCCCccEEEEEEecCceeEEEEE
Confidence 466889999999999999999999999999 999999986 6777789999999999887663 4566788
Q ss_pred eCCCCCCCcee---cCCCCCCceeeC
Q 031276 128 KCINCDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 128 ~C~~C~G~G~v---~C~~C~G~G~v~ 150 (162)
+|+.|+|+|++ +|+.|+|.|++.
T Consensus 186 ~C~~C~G~G~~~~~~C~~C~G~g~v~ 211 (377)
T PRK14298 186 TCSTCHGRGQVIESPCPVCSGTGKVR 211 (377)
T ss_pred eCCCCCCCCcccCCCCCCCCCccEEE
Confidence 99999999988 899999999874
No 6
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=7.3e-15 Score=129.60 Aligned_cols=91 Identities=24% Similarity=0.407 Sum_probs=82.0
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCC
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCI 130 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~ 130 (162)
++..+.|.|+|+|++.|..+++.+.+.+.| ..|+|+|+. .+....+|+.|+|+|.+...+ |.++...+|+
T Consensus 124 ~di~~~l~vtLee~~~G~~k~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~v~~~~-G~~~~~~~C~ 193 (372)
T PRK14286 124 SDLRYNLEVSLEDAALGREYKIEIPRLESC---VDCNGSGAS------KGSSPTTCPDCGGSGQIRRTQ-GFFSVATTCP 193 (372)
T ss_pred CCeeEEEEEEHHHHhCCeeEEEEeeccccC---CCCcCCCcC------CCCCCccCCCCcCeEEEEEEe-ceEEEEEeCC
Confidence 567889999999999999999999999999 999999985 566678999999999998776 7777888999
Q ss_pred CCCCCcee---cCCCCCCceeeCc
Q 031276 131 NCDGVGSL---TCTTCQGTGIQPR 151 (162)
Q Consensus 131 ~C~G~G~v---~C~~C~G~G~v~~ 151 (162)
.|+|+|++ +|+.|+|.|.+..
T Consensus 194 ~C~G~G~~~~~~C~~C~G~g~~~~ 217 (372)
T PRK14286 194 TCRGKGTVISNPCKTCGGQGLQEK 217 (372)
T ss_pred CCCceeeEecccCCCCCCCcEEec
Confidence 99999998 8999999998753
No 7
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=1.2e-14 Score=127.84 Aligned_cols=92 Identities=27% Similarity=0.469 Sum_probs=81.9
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS 127 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~ 127 (162)
++..+.|.|+|+|++.|..+++.+.+.+.| ..|+|+|+. .+....+|+.|+|+|++...++ |.++...
T Consensus 126 ~di~~~l~~slee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~ 196 (369)
T PRK14282 126 EDIRYEIEVTLSDLINGAEIPVEYDRYETC---PHCGGTGVE------PGSGYVTCPKCHGTGRIREERRSFFGVFVSER 196 (369)
T ss_pred CCeEEEEEEEHHHhcCCeEEEEEeeecccC---CCCCccCCC------CCCCCcCCCCCCCcCEEEEEEEccCcceEEEE
Confidence 467899999999999999999999999999 999999985 6667789999999999887652 6677788
Q ss_pred eCCCCCCCcee---cCCCCCCceeeCc
Q 031276 128 KCINCDGVGSL---TCTTCQGTGIQPR 151 (162)
Q Consensus 128 ~C~~C~G~G~v---~C~~C~G~G~v~~ 151 (162)
+|+.|+|+|++ +|+.|+|.|++..
T Consensus 197 ~C~~C~G~G~~~~~~C~~C~G~g~v~~ 223 (369)
T PRK14282 197 TCERCGGTGKIPGEYCHECGGSGRIRR 223 (369)
T ss_pred ECCCCCCcceeCCCCCCCCCCceeEEE
Confidence 99999999998 8999999997754
No 8
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=8.8e-15 Score=129.85 Aligned_cols=92 Identities=22% Similarity=0.417 Sum_probs=82.7
Q ss_pred CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeC
Q 031276 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKC 129 (162)
Q Consensus 50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C 129 (162)
.++..+.|.|+|+|++.|..++|.+++.+.| ..|+|+|++ .+....+|+.|+|+|++...+ |.++...+|
T Consensus 139 g~di~~~l~lsLee~~~G~~k~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~-g~~~~~~~C 208 (389)
T PRK14295 139 GADVESEVTLSFTEAIDGATVPLRLTSQAPC---PACSGTGAK------NGTTPRVCPTCSGTGQVSRNS-GGFSLSEPC 208 (389)
T ss_pred CCCEEEEEEEEHHHHhCCceEEEEeeccccC---CCCcccccC------CCCCCcCCCCCCCEeEEEEEe-cceEEEEec
Confidence 3467889999999999999999999999999 999999986 677778999999999998876 677788899
Q ss_pred CCCCCCcee---cCCCCCCceeeCc
Q 031276 130 INCDGVGSL---TCTTCQGTGIQPR 151 (162)
Q Consensus 130 ~~C~G~G~v---~C~~C~G~G~v~~ 151 (162)
+.|+|+|++ +|..|.|.|++..
T Consensus 209 ~~C~G~G~~~~~~C~~C~G~g~~~~ 233 (389)
T PRK14295 209 PDCKGRGLIADDPCLVCKGSGRAKS 233 (389)
T ss_pred CCCcceeEEeccCCCCCCCCceEee
Confidence 999999998 8999999997743
No 9
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=1.4e-14 Score=127.96 Aligned_cols=91 Identities=24% Similarity=0.455 Sum_probs=80.6
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS 127 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~ 127 (162)
++..+.|.|+|+|++.|..+++.+.+.+.| ..|+|+|++ .+....+|+.|+|+|++...+. |.++...
T Consensus 113 ~d~~~~l~vtLee~~~G~~~~i~~~~~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~ 183 (378)
T PRK14278 113 SDSLLRMRLDLEECATGVTKQVTVDTAVLC---DRCHGKGTA------GDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSR 183 (378)
T ss_pred CCeEEEEEEEHHHhcCCeEEEEEEEeeccC---CCCcCccCC------CCCCceecCCccCceEEEEEEeccceeEEEEE
Confidence 456889999999999999999999999999 999999986 6777789999999999887653 5566778
Q ss_pred eCCCCCCCcee---cCCCCCCceeeC
Q 031276 128 KCINCDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 128 ~C~~C~G~G~v---~C~~C~G~G~v~ 150 (162)
+|+.|+|.|++ +|+.|+|.|.+.
T Consensus 184 ~C~~C~G~G~~~~~~C~~C~G~g~v~ 209 (378)
T PRK14278 184 PCPTCRGVGEVIPDPCHECAGDGRVR 209 (378)
T ss_pred ECCCCCccceeeCCCCCCCCCceeEe
Confidence 99999999998 899999999773
No 10
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=1.1e-14 Score=128.08 Aligned_cols=90 Identities=24% Similarity=0.417 Sum_probs=80.4
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCC
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCI 130 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~ 130 (162)
++..+.|.|+|+|++.|..+++.+++.+.| ..|+|+|+. .+....+|+.|+|+|++... .|.++...+|+
T Consensus 120 ~di~~~l~vtlee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~-~G~~~~~~~C~ 189 (365)
T PRK14285 120 QDLTYQIEISLEDAYLGYKNNINITRNMLC---ESCLGKKSE------KGTSPSICNMCNGSGRVMQG-GGFFRVTTTCP 189 (365)
T ss_pred CCEEEEEEEEHHHhhCCeEEEEEeeecccC---CCCCCcccC------CCCCCccCCCccCceeEEec-CceeEEeeecC
Confidence 466889999999999999999999999999 999999986 56667899999999998864 36667889999
Q ss_pred CCCCCcee---cCCCCCCceeeC
Q 031276 131 NCDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 131 ~C~G~G~v---~C~~C~G~G~v~ 150 (162)
.|+|.|++ +|..|+|.|++.
T Consensus 190 ~C~G~G~~~~~~C~~C~G~g~v~ 212 (365)
T PRK14285 190 KCYGNGKIISNPCKSCKGKGSLK 212 (365)
T ss_pred CCCCcccccCCCCCCCCCCCEEe
Confidence 99999998 899999999874
No 11
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=1.6e-14 Score=127.71 Aligned_cols=91 Identities=24% Similarity=0.472 Sum_probs=80.9
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS 127 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~ 127 (162)
++..+.|.|+|+|++.|..++|.+.+.+.| ..|+|+|+. .+....+|+.|+|+|.++..++ |.++...
T Consensus 120 ~di~~~l~vtLee~~~G~~~~i~~~~~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~ 190 (380)
T PRK14276 120 DDLQYRVNLDFEEAIFGKEKEVSYNREATC---HTCNGSGAK------PGTSPVTCGKCHGSGVITVDTQTPLGMMRRQV 190 (380)
T ss_pred CCEEEEEEEEHHHhcCCeEEEEEeeccccC---CCCcCcccC------CCCCCccCCCCCCeeEEEEEEecCCceEEEEE
Confidence 466889999999999999999999999999 999999986 5666789999999999887663 5566788
Q ss_pred eCCCCCCCcee---cCCCCCCceeeC
Q 031276 128 KCINCDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 128 ~C~~C~G~G~v---~C~~C~G~G~v~ 150 (162)
+|+.|+|.|++ +|+.|+|.|++.
T Consensus 191 ~C~~C~G~G~~~~~~C~~C~G~g~~~ 216 (380)
T PRK14276 191 TCDVCHGTGKEIKEPCQTCHGTGHEK 216 (380)
T ss_pred ECCCCCCCCccccCCCCCCCCceEEE
Confidence 99999999998 899999999864
No 12
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=1.9e-14 Score=127.06 Aligned_cols=92 Identities=24% Similarity=0.420 Sum_probs=81.0
Q ss_pred CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCccce
Q 031276 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREF 126 (162)
Q Consensus 50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~ 126 (162)
.++..+.|.|+|+|++.|..++|.+++.+.| ..|+|+|+. .+....+|+.|+|+|++...+. |.++..
T Consensus 116 g~di~~~l~vtLee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~ 186 (376)
T PRK14280 116 GADLQYTMTLTFEEAVFGKEKEIEIPKEETC---DTCHGSGAK------PGTSKETCSHCGGSGQVSVEQNTPFGRVVNR 186 (376)
T ss_pred ccCEEEEEEEEHHHHhCCceeEEEEeeeccC---CCCCCcccC------CCCCCccCCCCCCEEEEEEEeecCCceEEEE
Confidence 3467899999999999999999999999999 999999985 6666789999999999887653 455677
Q ss_pred eeCCCCCCCcee---cCCCCCCceeeC
Q 031276 127 SKCINCDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 127 ~~C~~C~G~G~v---~C~~C~G~G~v~ 150 (162)
.+|+.|+|.|++ +|+.|+|.|++.
T Consensus 187 ~~C~~C~G~G~~~~~~C~~C~G~g~v~ 213 (376)
T PRK14280 187 QTCPHCNGTGQEIKEKCPTCHGKGKVR 213 (376)
T ss_pred EEcCCCCCCCceecCCCCCCCCceEEE
Confidence 899999999998 899999999874
No 13
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=1.3e-14 Score=128.14 Aligned_cols=90 Identities=23% Similarity=0.389 Sum_probs=81.2
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCC
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCI 130 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~ 130 (162)
++..+.|.|+|+|++.|..+++.+++.+.| ..|+|+|+. .+....+|+.|+|+|++.... |.++...+|+
T Consensus 118 ~di~~~l~vtLee~~~G~~k~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~v~~~~-G~~~~~~~C~ 187 (373)
T PRK14301 118 SDLRYNLTVSFRQAAKGDEVTLRIPKNVTC---DDCGGSGAA------PGTSPETCRHCGGSGQVRQSQ-GFFQIAVPCP 187 (373)
T ss_pred CCEEEEEeccHHHHhCCceEEEEeeecccC---CCCCCcccC------CCCCCcccCCccCeeEEEEEe-eeEEEEEeCC
Confidence 467899999999999999999999999999 999999986 566678999999999998765 6677889999
Q ss_pred CCCCCcee---cCCCCCCceeeC
Q 031276 131 NCDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 131 ~C~G~G~v---~C~~C~G~G~v~ 150 (162)
.|+|.|++ +|+.|+|.|++.
T Consensus 188 ~C~G~G~~~~~~C~~C~G~g~v~ 210 (373)
T PRK14301 188 VCRGEGRVITHPCPKCKGSGIVQ 210 (373)
T ss_pred CCCceeeecCCCCCCCCCCceec
Confidence 99999998 899999999874
No 14
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1.6e-14 Score=127.56 Aligned_cols=91 Identities=26% Similarity=0.484 Sum_probs=79.5
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC-CC--cccee
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG-GD--EREFS 127 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~-g~--~~~~~ 127 (162)
++..+.|.|+|+|++.|..++|.+++.+.| ..|+|+|++ .+....+|+.|+|+|.+...++ |. ++...
T Consensus 123 ~di~~~l~ltlee~~~G~~~~i~~~~~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~ 193 (372)
T PRK14296 123 QSVSLDIYLTFKELLFGVDKIIELDLLTNC---SKCFGSGAE------SNSDIHICNNCHGTGEVLVQKNMGFFQFQQSA 193 (372)
T ss_pred CCeEEEeeccHHHhhCCeeEEEEEeeeecc---CCCCCCccC------CCCCCccCCCCCCCceEEEEEeccceEEEEEe
Confidence 466889999999999999999999999999 999999986 6677789999999999887653 33 24567
Q ss_pred eCCCCCCCcee---cCCCCCCceeeC
Q 031276 128 KCINCDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 128 ~C~~C~G~G~v---~C~~C~G~G~v~ 150 (162)
+|+.|+|+|++ +|+.|+|.|.+.
T Consensus 194 ~C~~C~G~G~~~~~~C~~C~G~g~v~ 219 (372)
T PRK14296 194 KCNVCNGAGKIIKNKCKNCKGKGKYL 219 (372)
T ss_pred cCCCcCCcceeecccccCCCCceEEE
Confidence 99999999998 799999999763
No 15
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=2.6e-14 Score=126.04 Aligned_cols=91 Identities=21% Similarity=0.435 Sum_probs=81.2
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCC
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCI 130 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~ 130 (162)
++..+.+.|+|+|++.|..++|.|.+.+.| ..|+|+|.. .+....+|+.|+|+|.++... |.++...+|+
T Consensus 119 ~di~~~l~~sLee~~~G~~k~i~~~r~~~C---~~C~G~g~~------~~~~~~~C~~C~G~G~~~~~~-g~~~~~~~C~ 188 (372)
T PRK14300 119 SDLKYNLTINLEEAFHGIEKNISFSSEVKC---DTCHGSGSE------KGETVTTCDACSGVGATRMQQ-GFFTIEQACH 188 (372)
T ss_pred CCeeEEEEEEHHHHhCCceEEEEeeecccc---CCCCCcccC------CCCCCccCCCccCeEEEEEee-ceEEEEEeCC
Confidence 466889999999999999999999999999 999999986 566678999999999988764 6667788999
Q ss_pred CCCCCcee---cCCCCCCceeeCc
Q 031276 131 NCDGVGSL---TCTTCQGTGIQPR 151 (162)
Q Consensus 131 ~C~G~G~v---~C~~C~G~G~v~~ 151 (162)
.|+|.|++ +|+.|+|.|++..
T Consensus 189 ~C~G~G~~~~~~C~~C~G~g~v~~ 212 (372)
T PRK14300 189 KCQGNGQIIKNPCKKCHGMGRYHK 212 (372)
T ss_pred CCCccceEeCCCCCCCCCceEEEe
Confidence 99999999 8999999998743
No 16
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=2.7e-14 Score=125.47 Aligned_cols=92 Identities=22% Similarity=0.400 Sum_probs=81.6
Q ss_pred CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeC
Q 031276 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKC 129 (162)
Q Consensus 50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C 129 (162)
.++..+.|.|+|+|++.|..+++.+.+.+.| ..|+|+|.. .+.....|+.|+|+|++...+ |.++...+|
T Consensus 115 g~di~~~l~vsLee~~~G~~~~v~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~-g~~~~~~~C 184 (371)
T PRK10767 115 GADLRYNMEITLEEAVRGVTKEIRIPTLVTC---DTCHGSGAK------PGTSPKTCPTCHGAGQVRMQQ-GFFTVQQTC 184 (371)
T ss_pred CCCeEEEEEeehHHhhCCeeEEEeeeecccC---CCCCCcccC------CCCCCccCCCCCCeeEEEEee-ceEEEEEeC
Confidence 3467889999999999999999999999999 999999985 566668999999999988776 666778899
Q ss_pred CCCCCCcee---cCCCCCCceeeCc
Q 031276 130 INCDGVGSL---TCTTCQGTGIQPR 151 (162)
Q Consensus 130 ~~C~G~G~v---~C~~C~G~G~v~~ 151 (162)
+.|+|.|++ +|+.|+|.|.+..
T Consensus 185 ~~C~G~G~~~~~~C~~C~G~g~v~~ 209 (371)
T PRK10767 185 PTCHGRGKIIKDPCKKCHGQGRVEK 209 (371)
T ss_pred CCCCCceeECCCCCCCCCCCceEee
Confidence 999999998 8999999998743
No 17
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=3.8e-14 Score=125.12 Aligned_cols=91 Identities=22% Similarity=0.404 Sum_probs=80.9
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS 127 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~ 127 (162)
++..+.+.|+|+|++.|..++|.+++.+.| ..|+|+|.. .+....+|+.|+|+|++...++ |.++...
T Consensus 122 ~di~~~l~vsLee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~ 192 (380)
T PRK14297 122 ADIEYTINLTFEEAVFGVEKEISVTRNENC---ETCNGTGAK------PGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTT 192 (380)
T ss_pred CCEEEEEEEEHHHhcCCeEEEEEeeeeccC---CCccccccc------CCCcCccCCCccCeEEEEEEEEcCCceeEEEE
Confidence 467899999999999999999999999999 999999985 6777789999999999886652 5566788
Q ss_pred eCCCCCCCcee---cCCCCCCceeeC
Q 031276 128 KCINCDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 128 ~C~~C~G~G~v---~C~~C~G~G~v~ 150 (162)
+|+.|+|.|++ +|..|+|.|++.
T Consensus 193 ~C~~C~G~G~~~~~~C~~C~G~g~v~ 218 (380)
T PRK14297 193 TCDKCGGSGKVIEDPCNKCHGKGKVR 218 (380)
T ss_pred eCCCCCCCceEcCCCCCCCCCCeEEE
Confidence 99999999998 899999999764
No 18
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=3.9e-14 Score=124.51 Aligned_cols=91 Identities=23% Similarity=0.379 Sum_probs=81.5
Q ss_pred CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeC
Q 031276 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKC 129 (162)
Q Consensus 50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C 129 (162)
.++..+.|.|+|+|++.|..+++.+++.+.| ..|+|+|.. .+....+|+.|+|+|.+.... |.++...+|
T Consensus 117 g~d~~~~l~lslee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~-G~~~~~~~C 186 (366)
T PRK14294 117 GADLRYDLTLPFLEAAFGTEKEIRIQKLETC---EECHGSGCE------PGTSPTTCPQCGGSGQVTQSQ-GFFSIRTTC 186 (366)
T ss_pred CCCceEEEEeeHHHhcCCeEEEEEeeecccC---CCCCCcccc------CCCCcccCCCcCCeEEEEEEe-eeEEEEeeC
Confidence 3567899999999999999999999999999 999999985 566678999999999988665 667788999
Q ss_pred CCCCCCcee---cCCCCCCceeeC
Q 031276 130 INCDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 130 ~~C~G~G~v---~C~~C~G~G~v~ 150 (162)
+.|+|.|++ +|+.|+|.|++.
T Consensus 187 ~~C~G~G~~~~~~C~~C~G~g~v~ 210 (366)
T PRK14294 187 PRCRGMGKVIVSPCKTCHGQGRVR 210 (366)
T ss_pred CCCCCcCeecCcCCCCCCCceEee
Confidence 999999998 899999999874
No 19
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=5.2e-14 Score=124.19 Aligned_cols=92 Identities=23% Similarity=0.423 Sum_probs=81.0
Q ss_pred CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCccce
Q 031276 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREF 126 (162)
Q Consensus 50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~ 126 (162)
.++..+.|.|+|+|++.|..++|.+.+.+.| ..|+|+|+. .+....+|+.|+|+|++...+. |.++..
T Consensus 111 g~d~~~~l~vslee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~ 181 (371)
T PRK14287 111 GADLQYTMTLEFKEAVFGKETEIEIPREETC---GTCHGSGAK------PGTKPETCSHCGGSGQLNVEQNTPFGRVVNR 181 (371)
T ss_pred CCCEEEEEEEEHHHhcCCeEEEEEEeeeccC---CCCCCcccC------CCCCCcccCCCCCEEEEEEEEecCCceEEEE
Confidence 3566899999999999999999999999999 999999986 5666789999999999887663 555667
Q ss_pred eeCCCCCCCcee---cCCCCCCceeeC
Q 031276 127 SKCINCDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 127 ~~C~~C~G~G~v---~C~~C~G~G~v~ 150 (162)
.+|+.|+|+|++ +|..|.|.|.+.
T Consensus 182 ~~C~~C~G~G~~~~~~C~~C~G~g~v~ 208 (371)
T PRK14287 182 RVCHHCEGTGKIIKQKCATCGGKGKVR 208 (371)
T ss_pred EeCCCCCCCCccccccCCCCCCeeEEe
Confidence 899999999998 899999999874
No 20
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=4.4e-14 Score=124.96 Aligned_cols=90 Identities=22% Similarity=0.403 Sum_probs=80.8
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCC
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCI 130 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~ 130 (162)
++..+.|.|+|+|++.|..++|.+.+.+.| ..|+|+|.. .+....+|+.|+|+|++... ++.++...+|+
T Consensus 130 ~di~~~l~vsLee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~-~g~~~~~~~C~ 199 (382)
T PRK14291 130 EDIYQTVEISLEEAYTGTTVSLEVPRYVPC---EACGGTGYD------PGSGEKVCPTCGGSGEIYQR-GGFFRISQTCP 199 (382)
T ss_pred CCEEEEEEEEHHHhhCCEEEEEEEeeeccC---CCCccccCC------CCCCCccCCCCCCceEEEEe-cceEEEEecCC
Confidence 467899999999999999999999999999 999999985 66677899999999998876 36677889999
Q ss_pred CCCCCcee--cCCCCCCceeeC
Q 031276 131 NCDGVGSL--TCTTCQGTGIQP 150 (162)
Q Consensus 131 ~C~G~G~v--~C~~C~G~G~v~ 150 (162)
.|+|.|.+ +|+.|+|.|++.
T Consensus 200 ~C~G~G~~~~~C~~C~G~g~v~ 221 (382)
T PRK14291 200 TCGGEGVLREPCSKCNGRGLVI 221 (382)
T ss_pred CCCCceEEccCCCCCCCCceEE
Confidence 99999977 899999999774
No 21
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=3.7e-14 Score=125.04 Aligned_cols=89 Identities=21% Similarity=0.333 Sum_probs=79.0
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCC
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCI 130 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~ 130 (162)
++..+.|.|+|+|++.|..++|.+.+.+.| ..|+|+|+. .+ ...+|+.|+|+|.+...+ |.++...+|+
T Consensus 114 ~di~~~l~vslee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~-~~~~C~~C~G~G~~~~~~-g~~~~~~~C~ 182 (369)
T PRK14288 114 PDYLQTIELSFKEAVFGCKKTIKVQYQSVC---ESCDGTGAK------DK-ALETCKQCNGQGQVFMRQ-GFMSFAQTCG 182 (369)
T ss_pred CCeeEeccccHHHHhCCeEEEEEEEeeccC---CCCCCcccC------CC-CCcCCCCCCCCcEEEEEe-ceEEEEEecC
Confidence 466889999999999999999999999999 999999985 33 458999999999988765 6677788999
Q ss_pred CCCCCcee---cCCCCCCceeeC
Q 031276 131 NCDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 131 ~C~G~G~v---~C~~C~G~G~v~ 150 (162)
.|+|+|++ +|+.|+|.|++.
T Consensus 183 ~C~G~G~~~~~~C~~C~G~g~v~ 205 (369)
T PRK14288 183 ACQGKGKIIKTPCQACKGKTYIL 205 (369)
T ss_pred CCCCCceEccccCccCCCcceEE
Confidence 99999998 899999999774
No 22
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=6.9e-14 Score=123.84 Aligned_cols=91 Identities=24% Similarity=0.402 Sum_probs=80.5
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS 127 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~ 127 (162)
++..+.|.|+|+|++.|..+++.+++.+.| ..|+|+|.. .+....+|+.|+|+|++...+. |.++...
T Consensus 129 ~di~~~l~vtLee~~~G~~~~v~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~ 199 (386)
T PRK14277 129 ADIRYDLELTFEEAAFGTEKEIEVERFEKC---DVCKGSGAK------PGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIR 199 (386)
T ss_pred CCEEEEEEEEHHHHhCCeEEEEEEEeeccC---CCCCCCCcC------CCCCCccCCCCCCEEEEEEEEeccCceEEEEE
Confidence 467889999999999999999999999999 999999985 5666789999999999876652 5566678
Q ss_pred eCCCCCCCcee---cCCCCCCceeeC
Q 031276 128 KCINCDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 128 ~C~~C~G~G~v---~C~~C~G~G~v~ 150 (162)
+|+.|+|+|++ +|+.|+|.|.+.
T Consensus 200 ~C~~C~G~G~~~~~~C~~C~G~g~v~ 225 (386)
T PRK14277 200 TCDRCHGEGKIITDPCNKCGGTGRIR 225 (386)
T ss_pred ECCCCCcceeeccCCCCCCCCCcEEe
Confidence 99999999999 899999999873
No 23
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=6.1e-14 Score=124.71 Aligned_cols=91 Identities=23% Similarity=0.472 Sum_probs=79.5
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS 127 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~ 127 (162)
++..+.|.|+|+|++.|..+++.+.+.+.| ..|+|+|+. .+ ...+|+.|+|+|+++..+. |.++...
T Consensus 137 ~di~~~l~vtLee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~ 206 (397)
T PRK14281 137 TDLKIRLKLTLEEIAKGVEKTLKIKKQVPC---KECNGTGSK------TG-ATETCPTCHGSGEVRQASKTMFGQFVNIT 206 (397)
T ss_pred CCEEEEEEeEHHHHhCCeEEEEEEEeeecC---CCCCCcccC------CC-CCccCCCCCCCcEEEEEEecccceEEEEE
Confidence 466889999999999999999999999999 999999986 44 4689999999999887652 5566778
Q ss_pred eCCCCCCCcee---cCCCCCCceeeCc
Q 031276 128 KCINCDGVGSL---TCTTCQGTGIQPR 151 (162)
Q Consensus 128 ~C~~C~G~G~v---~C~~C~G~G~v~~ 151 (162)
+|+.|+|+|++ +|+.|+|.|++..
T Consensus 207 ~C~~C~G~G~~~~~~C~~C~G~g~v~~ 233 (397)
T PRK14281 207 ACPTCGGEGRVVKDRCPACYGEGIKQG 233 (397)
T ss_pred ecCCCcceeeeeCCCCCCCCCCccEec
Confidence 99999999998 8999999998743
No 24
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.47 E-value=8.6e-14 Score=121.35 Aligned_cols=92 Identities=23% Similarity=0.422 Sum_probs=80.8
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS 127 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~ 127 (162)
++..+.+.|+|+|++.|..+++.+++.+.| ..|+|+|.. .+....+|..|+|+|.+...++ |.++...
T Consensus 117 ~d~~~~l~vsLee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~ 187 (354)
T TIGR02349 117 EDLRYDLELTFEEAVFGVEKEIEIPRKESC---ETCHGTGAK------PGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQ 187 (354)
T ss_pred CCeEEEEEEEHHHHhCCeeEEEEeecCCcC---CCCCCCCCC------CCCCCccCCCCCCeeEEEEEEeccCCceEEEE
Confidence 467899999999999999999999999999 999999985 5555789999999999887763 4566778
Q ss_pred eCCCCCCCcee---cCCCCCCceeeCc
Q 031276 128 KCINCDGVGSL---TCTTCQGTGIQPR 151 (162)
Q Consensus 128 ~C~~C~G~G~v---~C~~C~G~G~v~~ 151 (162)
+|+.|+|+|++ +|+.|+|.|.+..
T Consensus 188 ~C~~C~G~G~~~~~~C~~C~G~g~v~~ 214 (354)
T TIGR02349 188 TCPTCGGEGKIIKEPCSTCKGKGRVKE 214 (354)
T ss_pred ecCCCCCcceecCCCCCCCCCCcEecc
Confidence 99999999998 8999999997743
No 25
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=1.6e-13 Score=121.37 Aligned_cols=92 Identities=25% Similarity=0.452 Sum_probs=80.7
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS 127 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~ 127 (162)
++..+.+.|+|+|++.|..+++.+.+.+.| ..|+|+|+. .+.....|+.|+|+|.++..++ |.++...
T Consensus 128 ~di~~~l~vsLee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~ 198 (386)
T PRK14289 128 SDLRVKVKLNLKEISTGVEKKFKVKKYVPC---SHCHGTGAE------GNNGSETCPTCKGSGSVTRVQNTILGTMQTQS 198 (386)
T ss_pred CCeEEEEEEEHHHhhCCeEEEEEEEeeccc---CCCCCCCCC------CCCCCCcCCCCcCeEEEEEEEecccceEEEEE
Confidence 467889999999999999999999999999 999999986 4555689999999999887663 5566788
Q ss_pred eCCCCCCCcee---cCCCCCCceeeCc
Q 031276 128 KCINCDGVGSL---TCTTCQGTGIQPR 151 (162)
Q Consensus 128 ~C~~C~G~G~v---~C~~C~G~G~v~~ 151 (162)
+|+.|+|.|++ .|..|+|.|.+..
T Consensus 199 ~C~~C~G~G~~~~~~C~~C~G~g~v~~ 225 (386)
T PRK14289 199 TCPTCNGEGKIIKKKCKKCGGEGIVYG 225 (386)
T ss_pred ecCCCCccccccCcCCCCCCCCcEEee
Confidence 99999999998 8999999998743
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=4.5e-13 Score=118.30 Aligned_cols=92 Identities=22% Similarity=0.421 Sum_probs=81.0
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS 127 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~ 127 (162)
++..+.+.|+|+|++.|..+++.+.+.+.| ..|+|+|.. .+....+|+.|+|+|.+...+. |.++...
T Consensus 120 ~di~~~l~vsLed~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~ 190 (378)
T PRK14283 120 ADIYTEVEITLEEAASGVEKDIKVRHTKKC---PVCNGSRAE------PGSEVKTCPTCGGTGQVKQVRNTILGQMMNVT 190 (378)
T ss_pred CCeEEEeeeeHHHHhCCcceEEEeeeeccC---CCCCccccC------CCCCCccCCCcCCccEEEEEEeccCceEEEEE
Confidence 356888999999999999999999999999 999999985 6677789999999999887652 5566778
Q ss_pred eCCCCCCCcee---cCCCCCCceeeCc
Q 031276 128 KCINCDGVGSL---TCTTCQGTGIQPR 151 (162)
Q Consensus 128 ~C~~C~G~G~v---~C~~C~G~G~v~~ 151 (162)
+|+.|+|.|+. +|..|+|.|.+..
T Consensus 191 ~C~~C~G~G~~~~~~C~~C~G~g~v~~ 217 (378)
T PRK14283 191 TCPDCQGEGKIVEKPCSNCHGKGVVRE 217 (378)
T ss_pred ECCCCCccceecCCCCCCCCCceeecc
Confidence 99999999998 8999999998744
No 27
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=5.9e-13 Score=117.07 Aligned_cols=92 Identities=25% Similarity=0.454 Sum_probs=78.4
Q ss_pred CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC-CCc--cce
Q 031276 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG-GDE--REF 126 (162)
Q Consensus 50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~-g~~--~~~ 126 (162)
+++..+.|.|+|+|++.|..++|.+.+.+.| ..|+|+|.. .+ ...+|+.|+|+|++...++ |.+ +..
T Consensus 122 ~~di~~~l~lsLee~~~G~~~~i~~~r~~~C---~~C~G~g~~------~~-~~~~C~~C~G~G~~~~~~~~g~~~~~~~ 191 (365)
T PRK14290 122 DLDIYTNLDISLEDAYYGTEKRIKYRRNAMC---PDCSGTGAK------NG-KLITCPTCHGTGQQRIVRGQGFFRMVTV 191 (365)
T ss_pred CCCEEEEEEecHHHhcCCEEEEEEeeecccC---CCCccccCC------CC-CCccCCCCCCcCEEEEEeccCeEEEEEE
Confidence 4577899999999999999999999999999 999999985 34 4579999999999877653 333 245
Q ss_pred eeCCCCCCCcee---cCCCCCCceeeCc
Q 031276 127 SKCINCDGVGSL---TCTTCQGTGIQPR 151 (162)
Q Consensus 127 ~~C~~C~G~G~v---~C~~C~G~G~v~~ 151 (162)
.+|+.|+|.|++ +|+.|+|.|++..
T Consensus 192 ~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 219 (365)
T PRK14290 192 TTCRTCGGRGRIPEEKCPRCNGTGTVVV 219 (365)
T ss_pred EeCCCCCCceeEccCCCCCCCCceeEEE
Confidence 799999999988 8999999998744
No 28
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=5e-13 Score=117.87 Aligned_cols=92 Identities=22% Similarity=0.381 Sum_probs=80.4
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS 127 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~ 127 (162)
++-.+.+.|+|+|++.|..+.+.+.+.+.| ..|+|+|.. .+....+|+.|+|+|+++..++ |.++...
T Consensus 117 ~di~~~l~vsLee~~~G~~k~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~ 187 (374)
T PRK14293 117 DDLRYDLKLDFREAIFGGEKEIRIPHLETC---ETCRGSGAK------PGTGPTTCSTCGGAGQVRRATRTPFGSFTQVS 187 (374)
T ss_pred CCeEEEEEeeHHHHhCCceEEEEeeccccC---CCCCCcCCC------CCCCCeeCCCCCCcceEEEEEecCcceEEEEe
Confidence 355788999999999999999999999999 999999986 5667789999999999887663 5566778
Q ss_pred eCCCCCCCcee---cCCCCCCceeeCc
Q 031276 128 KCINCDGVGSL---TCTTCQGTGIQPR 151 (162)
Q Consensus 128 ~C~~C~G~G~v---~C~~C~G~G~v~~ 151 (162)
+|+.|+|.|++ +|..|+|.|++..
T Consensus 188 ~C~~C~G~G~~~~~~C~~C~G~g~v~~ 214 (374)
T PRK14293 188 ECPTCNGTGQVIEDPCDACGGQGVKQV 214 (374)
T ss_pred eCCCCCcceeEeccCCCCCCCCccccc
Confidence 99999999998 8999999998744
No 29
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.40 E-value=5e-13 Score=120.29 Aligned_cols=91 Identities=22% Similarity=0.460 Sum_probs=76.7
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC-CCc--ccee
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG-GDE--REFS 127 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~-g~~--~~~~ 127 (162)
++..+.|.|+|+|++.|..+++.+.+.+.| ..|+|+|+. .+ ...+|+.|+|+|.+..... |.+ +...
T Consensus 124 ~di~~~l~vtLee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~-~~~~C~~C~G~G~~~~~~~~g~~~~q~~~ 193 (421)
T PTZ00037 124 EDIVSHLKVTLEQIYNGAMRKLAINKDVIC---ANCEGHGGP------KD-AFVDCKLCNGQGIRVQIRQMGSMIHQTQS 193 (421)
T ss_pred CCEEEEeeeeHHHHhCCCceEEEeeccccc---cccCCCCCC------CC-CCccCCCCCCCCeEEEEEeecceeeEEEE
Confidence 467889999999999999999999999999 999999974 33 4589999999998655442 322 4678
Q ss_pred eCCCCCCCcee-----cCCCCCCceeeCc
Q 031276 128 KCINCDGVGSL-----TCTTCQGTGIQPR 151 (162)
Q Consensus 128 ~C~~C~G~G~v-----~C~~C~G~G~v~~ 151 (162)
+|+.|+|+|++ +|+.|+|.|++..
T Consensus 194 ~C~~C~G~G~~i~~~~~C~~C~G~g~v~~ 222 (421)
T PTZ00037 194 TCNSCNGQGKIIPESKKCKNCSGKGVKKT 222 (421)
T ss_pred eCCCCCCcceeccccccCCcCCCcceeee
Confidence 99999999997 6999999998753
No 30
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=1.3e-12 Score=114.81 Aligned_cols=91 Identities=20% Similarity=0.357 Sum_probs=78.7
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCC-CccccCCCCCCcceEEEEe---CCCccce
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLP-LQWLRCSFCMGTGSVTVEL---GGDEREF 126 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G-~G~~~C~~C~GtG~v~~~~---~g~~~~~ 126 (162)
++..+.+.|+|+|+++|..+++.+++.+.| ..|+|+|.. .+ ....+|..|+|+|+++..+ .|.++..
T Consensus 113 ~d~~~~l~~sLee~~~G~~~~v~~~r~~~C---~~C~G~G~~------~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~ 183 (371)
T PRK14292 113 DDLETEARITLEQARAGEEVEVEVDRLTEC---EHCHGSRTE------PGGKPPKTCPTCRGAGAVRAQARTIFGVVETQ 183 (371)
T ss_pred CCeEEEEeccHHHHcCCeEEEEEEEeeecC---CCCcccccC------CCCCCCccCCCCCCccEEEEEEeccCceEEEe
Confidence 466888999999999999999999999999 999999985 33 2368999999999988665 2555667
Q ss_pred eeCCCCCCCcee---cCCCCCCceeeC
Q 031276 127 SKCINCDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 127 ~~C~~C~G~G~v---~C~~C~G~G~v~ 150 (162)
.+|+.|+|.|.. +|+.|.|.|++.
T Consensus 184 ~~C~~C~G~G~~~~~~C~~C~G~g~v~ 210 (371)
T PRK14292 184 QPCPTCRGEGQIITDPCTVCRGRGRTL 210 (371)
T ss_pred eecCCCcccceecCCCCCCCCCceEEe
Confidence 899999999998 899999999874
No 31
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.26 E-value=1e-11 Score=85.35 Aligned_cols=58 Identities=31% Similarity=0.600 Sum_probs=46.8
Q ss_pred cCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCccceeeCCCCCCCcee----cCCCCCCce
Q 031276 84 FPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL----TCTTCQGTG 147 (162)
Q Consensus 84 ~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~~C~~C~G~G~v----~C~~C~G~G 147 (162)
..|+|+|++ .+..+.+|+.|+|+|++...++ +.++...+|+.|+|+|++ +|+.|+|.|
T Consensus 2 ~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 2 PKCNGTGAK------PGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp CCCTTTSB-------STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CcCCCcccC------CCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 789999996 6788899999999999988763 556788999999999999 599999986
No 32
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.6e-09 Score=92.84 Aligned_cols=91 Identities=22% Similarity=0.375 Sum_probs=77.6
Q ss_pred CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCC---Cc-cc
Q 031276 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGG---DE-RE 125 (162)
Q Consensus 50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g---~~-~~ 125 (162)
-.++.+.|+|+|+|.+.|...++++.++..| ..|+|+|-. .++- ..|..|.|+|.....++. .. +.
T Consensus 100 g~~~~~~~~~~Le~~y~G~s~kl~l~~~~iC---s~C~GsGgk------sg~~-~~C~~C~GsGv~~~~~~~gPg~~qs~ 169 (337)
T KOG0712|consen 100 GKDVVHQLKVTLEELYMGKSKKLFLSRNFIC---SKCSGSGGK------SGSA-PKCTTCRGSGVQTRTRQMGPGMVQSP 169 (337)
T ss_pred CCCceEEEEEEHHHhhcCCccceecccCccC---CcCCCCCCC------CCCC-CCCCCCCCCCceeEEEeccccccccc
Confidence 6789999999999999999999999999999 999999986 2322 479999999987766632 22 46
Q ss_pred eeeCCCCCCCcee-----cCCCCCCceeeC
Q 031276 126 FSKCINCDGVGSL-----TCTTCQGTGIQP 150 (162)
Q Consensus 126 ~~~C~~C~G~G~v-----~C~~C~G~G~v~ 150 (162)
+..|..|+|.|.. .|+.|.|.+++.
T Consensus 170 q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~ 199 (337)
T KOG0712|consen 170 QLVCDSCNGSGETISLKDRCKTCSGAKVVR 199 (337)
T ss_pred eeEeccCCCccccccccccCcccccchhhh
Confidence 7899999999997 899999999763
No 33
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=6.4e-09 Score=92.07 Aligned_cols=88 Identities=24% Similarity=0.423 Sum_probs=61.3
Q ss_pred eeecceeEEEEeecCCCcccCcccccccCccccCCCCc--------cccCCCCCC-----cceEEEEeCCCccceeeCCC
Q 031276 65 AVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQ--------WLRCSFCMG-----TGSVTVELGGDEREFSKCIN 131 (162)
Q Consensus 65 a~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G--------~~~C~~C~G-----tG~v~~~~~g~~~~~~~C~~ 131 (162)
..|+.-++-+.....=.+|+.|+|.|+..|+. |+|.| ...|..|-| .|+-..-..-..++..+|++
T Consensus 172 f~~~~~~~~vphs~~v~~ch~c~gRG~~vc~g-c~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~t 250 (406)
T KOG2813|consen 172 FSGVAHPAVVPHSMIVTFCHACLGRGAMVCHG-CSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHT 250 (406)
T ss_pred ccccccceeccchHhhhhhhcccCCCceeccC-cCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCc
Confidence 34444455555544434558888898888888 88888 778888877 11111000012347789999
Q ss_pred CCCCceecCCCCCCceeeCccc
Q 031276 132 CDGVGSLTCTTCQGTGIQPRYL 153 (162)
Q Consensus 132 C~G~G~v~C~~C~G~G~v~~~l 153 (162)
|+|+|+++|.+|.|+|.+..|+
T Consensus 251 C~grG~k~C~TC~gtgsll~~t 272 (406)
T KOG2813|consen 251 CKGRGKKPCTTCSGTGSLLNYT 272 (406)
T ss_pred ccCCCCcccccccCccceeeeE
Confidence 9999999999999999998886
No 34
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=9.1e-08 Score=82.64 Aligned_cols=92 Identities=24% Similarity=0.424 Sum_probs=78.9
Q ss_pred CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeC
Q 031276 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKC 129 (162)
Q Consensus 50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C 129 (162)
|.+..+...++|++|+.|..+.+.|.....| ..|.|.|.+ .|.....|..|+|+|.+.....+.+... +|
T Consensus 137 ~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~---~t~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~ 206 (288)
T KOG0715|consen 137 DKDQYYDLSLDFKEAVRGSKKRISFNVLSDC---ETCFGSGAE------EGAKRESCKTCSGRGLVSNPKEDPFILY-TC 206 (288)
T ss_pred CcccccccccCHHHHhhccccceEEEeeccc---ccccCcCcc------cccccccchhhhCcccccccccCCccee-ec
Confidence 4456788999999999999999999999998 999999976 7889999999999997765444555455 89
Q ss_pred CCCCCCcee---cCCCCCCceeeCc
Q 031276 130 INCDGVGSL---TCTTCQGTGIQPR 151 (162)
Q Consensus 130 ~~C~G~G~v---~C~~C~G~G~v~~ 151 (162)
..|.|.|.+ .|..|.|.|++..
T Consensus 207 ~~c~~~~~~~~~~c~~~~g~~~v~~ 231 (288)
T KOG0715|consen 207 SYCLGRGLVLRDNCQACSGAGQVRR 231 (288)
T ss_pred ccccccceeccchHHHhhcchhhhh
Confidence 999999999 6999999996643
No 35
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2e-06 Score=76.45 Aligned_cols=62 Identities=27% Similarity=0.455 Sum_probs=48.1
Q ss_pred ccccCccccCCCCccccCCCCCCcce--------EEEEeC-C----CccceeeCCCCCCCceecCCCCCCceeeCc
Q 031276 89 AGQARKYSAMLPLQWLRCSFCMGTGS--------VTVELG-G----DEREFSKCINCDGVGSLTCTTCQGTGIQPR 151 (162)
Q Consensus 89 sG~~~C~~~C~G~G~~~C~~C~GtG~--------v~~~~~-g----~~~~~~~C~~C~G~G~v~C~~C~G~G~v~~ 151 (162)
.-.+.|+. |.|.|...|+.|+|+|. +++..- | .......|..|+|+|+.+|++|+|.|.++.
T Consensus 185 ~~v~~ch~-c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C 259 (406)
T KOG2813|consen 185 MIVTFCHA-CLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPC 259 (406)
T ss_pred Hhhhhhhc-ccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCccc
Confidence 34456888 99999999999999993 333321 2 122456899999999999999999998865
No 36
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.88 E-value=6.7e-06 Score=77.70 Aligned_cols=65 Identities=26% Similarity=0.314 Sum_probs=48.9
Q ss_pred cccCcccccccCccccCCCCccccCCCCCCcceEEEEeC------------CCccceeeCCCCCCCcee----cCCCCCC
Q 031276 82 YDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG------------GDEREFSKCINCDGVGSL----TCTTCQG 145 (162)
Q Consensus 82 ~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~------------g~~~~~~~C~~C~G~G~v----~C~~C~G 145 (162)
.|+.|+|.|.. |- +...|+.|+|+|++....- ++.....+|+.|+|.|.+ +|+.|.|
T Consensus 4 ~C~~C~g~G~i-----~v--~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G 76 (715)
T COG1107 4 KCPECGGKGKI-----VV--GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGG 76 (715)
T ss_pred cccccCCCceE-----ee--eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCC
Confidence 34999999986 22 2378999999999853321 112235699999999999 7999999
Q ss_pred ceeeCccc
Q 031276 146 TGIQPRYL 153 (162)
Q Consensus 146 ~G~v~~~l 153 (162)
+|.+..|-
T Consensus 77 ~gkv~~c~ 84 (715)
T COG1107 77 TGKVLTCD 84 (715)
T ss_pred ceeEEeec
Confidence 99987653
No 37
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.75 E-value=2.3e-05 Score=53.72 Aligned_cols=39 Identities=41% Similarity=0.951 Sum_probs=28.0
Q ss_pred CCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276 106 CSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 150 (162)
Q Consensus 106 C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~ 150 (162)
|+.|+|+|... + ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 1 C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 1 CPKCNGTGAKP----G--KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII 54 (66)
T ss_dssp -CCCTTTSB-S----T--TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred CCcCCCcccCC----C--CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence 78999999853 1 246799999999987 699999999874
No 38
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.61 E-value=9.9e-05 Score=56.33 Aligned_cols=44 Identities=30% Similarity=0.510 Sum_probs=36.6
Q ss_pred cccCcccccccCccccCCCCcc------------ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee
Q 031276 82 YDFPIFGAGQARKYSAMLPLQW------------LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL 138 (162)
Q Consensus 82 ~~~~C~GsG~~~C~~~C~G~G~------------~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v 138 (162)
.|..|+|+|.+.|.. |.|+|. .+|+.|+|+|++ .|..|.|.|.+
T Consensus 43 ~C~~C~GsG~~~C~~-C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~------------~C~~C~G~G~~ 98 (111)
T PLN03165 43 PCFPCSGTGAQVCRF-CVGSGNVTVELGGGEKEVSKCINCDGAGSL------------TCTTCQGSGIQ 98 (111)
T ss_pred CCCCCCCCCCcCCCC-CcCcCeEEEEeCCcEEEEEECCCCCCccee------------eCCCCCCCEEE
Confidence 349999999999999 999763 378889988863 39999999986
No 39
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=8.5e-05 Score=66.80 Aligned_cols=42 Identities=40% Similarity=0.911 Sum_probs=33.1
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-------------cCCCCCCceeeC
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-------------TCTTCQGTGIQP 150 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-------------~C~~C~G~G~v~ 150 (162)
...|..|+|+|... | ....+|++|+|+|++ +|++|+|+|.+.
T Consensus 142 ~~~C~~C~GsGak~----g--t~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i 196 (371)
T COG0484 142 SVTCSTCHGSGAKP----G--TDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII 196 (371)
T ss_pred eeECCcCCCCCCCC----C--CCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC
Confidence 47899999998764 2 246789999999964 699999999764
No 40
>PRK14279 chaperone protein DnaJ; Provisional
Probab=96.85 E-value=0.00052 Score=61.45 Aligned_cols=42 Identities=33% Similarity=0.736 Sum_probs=34.0
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 150 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~ 150 (162)
...|+.|+|+|.... ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 173 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i 225 (392)
T PRK14279 173 PAPCTTCHGSGARPG------TSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII 225 (392)
T ss_pred cccCCCCccccccCC------CCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe
Confidence 368999999998541 134689999999975 699999999873
No 41
>PRK14296 chaperone protein DnaJ; Provisional
Probab=96.78 E-value=0.00068 Score=60.32 Aligned_cols=42 Identities=33% Similarity=0.872 Sum_probs=33.6
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 150 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~ 150 (162)
...|..|+|+|... + ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 149 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~ 205 (372)
T PRK14296 149 LTNCSKCFGSGAES----N--SDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII 205 (372)
T ss_pred eeccCCCCCCccCC----C--CCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee
Confidence 36899999999753 1 134679999999964 799999999874
No 42
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.69 E-value=0.00093 Score=59.68 Aligned_cols=41 Identities=32% Similarity=0.854 Sum_probs=33.3
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceee
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQ 149 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v 149 (162)
...|..|+|+|... + ....+|+.|+|+|.+ +|+.|+|+|++
T Consensus 158 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~ 209 (391)
T PRK14284 158 YKSCDACSGSGANS----S--QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRV 209 (391)
T ss_pred eccCCCCcccccCC----C--CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcc
Confidence 36899999999743 1 135689999999983 79999999976
No 43
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.59 E-value=0.001 Score=59.10 Aligned_cols=42 Identities=38% Similarity=0.897 Sum_probs=33.7
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 150 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~ 150 (162)
...|+.|+|+|... + ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 145 ~~~C~~C~G~g~~~----~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 197 (372)
T PRK14300 145 EVKCDTCHGSGSEK----G--ETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII 197 (372)
T ss_pred ccccCCCCCcccCC----C--CCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe
Confidence 37899999999743 1 134689999999975 699999999874
No 44
>PRK14298 chaperone protein DnaJ; Provisional
Probab=96.59 E-value=0.0012 Score=58.90 Aligned_cols=42 Identities=43% Similarity=0.909 Sum_probs=33.2
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 150 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~ 150 (162)
...|..|+|+|... + ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 141 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 197 (377)
T PRK14298 141 AERCSTCSGTGAKP----G--TSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI 197 (377)
T ss_pred eccCCCCCCCcccC----C--CCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc
Confidence 36899999999753 1 134679999999964 699999999763
No 45
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.003 Score=55.04 Aligned_cols=50 Identities=28% Similarity=0.565 Sum_probs=42.7
Q ss_pred CccccCCCCccccCCCCCCcceEEEEeCCCccceeeCCCCCCCceecCCCCC
Q 031276 93 RKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQ 144 (162)
Q Consensus 93 ~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v~C~~C~ 144 (162)
.|.. |.|.....|..|||+=++.... .......+|+.|+=-|.++|+.|.
T Consensus 231 ~C~~-CGg~rFlpC~~C~GS~kv~~~~-~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 231 VCES-CGGARFLPCSNCHGSCKVHEEE-EDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred cCCC-cCCcceEecCCCCCceeeeeec-cCCCcEEECcccCCCCceeCCccC
Confidence 4777 9999999999999999888642 334467899999999999999995
No 46
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.56 E-value=0.0012 Score=58.41 Aligned_cols=42 Identities=33% Similarity=0.797 Sum_probs=33.5
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 150 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~ 150 (162)
...|+.|+|+|.... .....|+.|+|+|.+ +|+.|+|+|++.
T Consensus 142 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 194 (371)
T PRK10767 142 LVTCDTCHGSGAKPG------TSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII 194 (371)
T ss_pred cccCCCCCCcccCCC------CCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC
Confidence 368999999997531 124589999999976 599999999873
No 47
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.56 E-value=0.001 Score=59.00 Aligned_cols=42 Identities=36% Similarity=0.748 Sum_probs=33.0
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 150 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~ 150 (162)
...|..|+|+|... + ....+|+.|+|+|.+ +|+.|.|+|.+.
T Consensus 146 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~ 198 (365)
T PRK14285 146 NMLCESCLGKKSEK----G--TSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII 198 (365)
T ss_pred cccCCCCCCcccCC----C--CCCccCCCccCceeEEecCceeEEeeecCCCCCccccc
Confidence 36899999999743 1 134579999999964 799999999773
No 48
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.55 E-value=0.0012 Score=58.76 Aligned_cols=42 Identities=36% Similarity=0.849 Sum_probs=33.5
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 150 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~ 150 (162)
...|..|+|+|... + ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 150 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~ 202 (372)
T PRK14286 150 LESCVDCNGSGASK----G--SSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI 202 (372)
T ss_pred cccCCCCcCCCcCC----C--CCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe
Confidence 36899999999753 1 124679999999965 699999999874
No 49
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.55 E-value=0.0019 Score=61.54 Aligned_cols=47 Identities=32% Similarity=0.699 Sum_probs=39.7
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee------------------------cCCCCCCceeeCccccccc
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL------------------------TCTTCQGTGIQPRYLDRRE 157 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v------------------------~C~~C~G~G~v~~~l~~r~ 157 (162)
.+|+.|+|+|++.. +...|+.|+|+|.. +|+.|+|+|.+.-|....+
T Consensus 3 ~~C~~C~g~G~i~v-------~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~ 73 (715)
T COG1107 3 KKCPECGGKGKIVV-------GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPE 73 (715)
T ss_pred ccccccCCCceEee-------eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeeccc
Confidence 68999999999874 45789999999864 7999999999988876553
No 50
>PRK14301 chaperone protein DnaJ; Provisional
Probab=96.54 E-value=0.0012 Score=58.81 Aligned_cols=41 Identities=29% Similarity=0.762 Sum_probs=33.1
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 150 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~ 150 (162)
..|..|+|+|.... ....+|+.|+|+|.+ +|+.|+|.|++.
T Consensus 145 ~~C~~C~G~G~~~~------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~ 196 (373)
T PRK14301 145 VTCDDCGGSGAAPG------TSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI 196 (373)
T ss_pred ccCCCCCCcccCCC------CCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec
Confidence 68999999998531 124579999999975 799999999874
No 51
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.52 E-value=0.0014 Score=58.46 Aligned_cols=42 Identities=31% Similarity=0.729 Sum_probs=33.3
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 150 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~ 150 (162)
...|..|+|+|... + ....+|+.|+|+|.+ +|..|+|+|.+.
T Consensus 139 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 195 (378)
T PRK14278 139 AVLCDRCHGKGTAG----D--SKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI 195 (378)
T ss_pred eccCCCCcCccCCC----C--CCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee
Confidence 36899999999743 1 134689999999963 699999999873
No 52
>PRK14297 chaperone protein DnaJ; Provisional
Probab=96.50 E-value=0.0013 Score=58.55 Aligned_cols=41 Identities=37% Similarity=0.846 Sum_probs=33.2
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 150 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~ 150 (162)
..|..|+|+|... +. ...+|+.|+|.|.+ +|..|+|+|.+.
T Consensus 149 ~~C~~C~G~G~~~----~~--~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 204 (380)
T PRK14297 149 ENCETCNGTGAKP----GT--SPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI 204 (380)
T ss_pred ccCCCcccccccC----CC--cCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc
Confidence 6899999999853 21 25689999999964 699999999874
No 53
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.49 E-value=0.0013 Score=58.24 Aligned_cols=41 Identities=41% Similarity=0.978 Sum_probs=33.1
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 150 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~ 150 (162)
..|..|+|+|... + ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 153 ~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 208 (369)
T PRK14282 153 ETCPHCGGTGVEP----G--SGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP 208 (369)
T ss_pred ccCCCCCccCCCC----C--CCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC
Confidence 6899999999753 1 134689999999975 599999999873
No 54
>PRK14295 chaperone protein DnaJ; Provisional
Probab=96.42 E-value=0.0015 Score=58.48 Aligned_cols=41 Identities=34% Similarity=0.888 Sum_probs=33.3
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 150 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~ 150 (162)
..|..|+|+|... + ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 167 ~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 218 (389)
T PRK14295 167 APCPACSGTGAKN----G--TTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA 218 (389)
T ss_pred ccCCCCcccccCC----C--CCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe
Confidence 6899999999854 1 134689999999974 799999999873
No 55
>PRK14276 chaperone protein DnaJ; Provisional
Probab=96.42 E-value=0.0016 Score=58.03 Aligned_cols=42 Identities=36% Similarity=0.809 Sum_probs=33.2
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 150 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~ 150 (162)
...|..|+|+|... + ....+|+.|+|+|.+ +|+.|+|+|.+.
T Consensus 146 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 202 (380)
T PRK14276 146 EATCHTCNGSGAKP----G--TSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI 202 (380)
T ss_pred cccCCCCcCcccCC----C--CCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc
Confidence 36899999999743 1 134689999999864 699999999773
No 56
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=96.40 E-value=0.002 Score=58.55 Aligned_cols=41 Identities=34% Similarity=0.800 Sum_probs=33.0
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCce---------------ecCCCCCCceeeCc
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGS---------------LTCTTCQGTGIQPR 151 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~---------------v~C~~C~G~G~v~~ 151 (162)
..|..|+|+|... + ...+|+.|+|+|. .+|+.|+|+|.+..
T Consensus 151 ~~C~~C~G~G~~~----~---~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~ 206 (421)
T PTZ00037 151 VICANCEGHGGPK----D---AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP 206 (421)
T ss_pred ccccccCCCCCCC----C---CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc
Confidence 6899999999631 2 3468999999994 27999999998754
No 57
>PRK14280 chaperone protein DnaJ; Provisional
Probab=96.38 E-value=0.0015 Score=58.09 Aligned_cols=42 Identities=36% Similarity=0.842 Sum_probs=33.1
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 150 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~ 150 (162)
...|+.|+|+|... + ....+|+.|+|+|.+ +|+.|+|+|.+.
T Consensus 143 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 199 (376)
T PRK14280 143 EETCDTCHGSGAKP----G--TSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI 199 (376)
T ss_pred eccCCCCCCcccCC----C--CCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee
Confidence 36899999999743 1 134679999999964 699999999863
No 58
>PRK14287 chaperone protein DnaJ; Provisional
Probab=96.31 E-value=0.0016 Score=57.79 Aligned_cols=41 Identities=37% Similarity=0.872 Sum_probs=32.8
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 150 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~ 150 (162)
..|..|+|+|... + ....+|+.|+|+|.+ +|+.|.|+|++.
T Consensus 139 ~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 194 (371)
T PRK14287 139 ETCGTCHGSGAKP----G--TKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII 194 (371)
T ss_pred ccCCCCCCcccCC----C--CCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc
Confidence 6899999999753 1 234679999999964 699999999873
No 59
>PRK14294 chaperone protein DnaJ; Provisional
Probab=96.25 E-value=0.0024 Score=56.58 Aligned_cols=41 Identities=32% Similarity=0.741 Sum_probs=32.7
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 150 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~ 150 (162)
..|..|+|+|.... ....+|+.|+|.|.+ +|+.|+|+|++.
T Consensus 145 ~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~ 196 (366)
T PRK14294 145 ETCEECHGSGCEPG------TSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI 196 (366)
T ss_pred ccCCCCCCccccCC------CCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec
Confidence 68999999998531 124679999999964 699999999873
No 60
>PRK14277 chaperone protein DnaJ; Provisional
Probab=96.25 E-value=0.0022 Score=57.27 Aligned_cols=42 Identities=31% Similarity=0.791 Sum_probs=33.5
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 150 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~ 150 (162)
...|..|+|+|.... ....+|+.|+|.|.+ +|..|+|+|++.
T Consensus 155 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 211 (386)
T PRK14277 155 FEKCDVCKGSGAKPG------SKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII 211 (386)
T ss_pred eccCCCCCCCCcCCC------CCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec
Confidence 368999999997531 134689999999875 599999999873
No 61
>PRK14288 chaperone protein DnaJ; Provisional
Probab=96.22 E-value=0.0026 Score=56.55 Aligned_cols=40 Identities=38% Similarity=0.846 Sum_probs=31.1
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 150 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~ 150 (162)
..|..|+|+|... + ...+|+.|+|.|.+ +|+.|.|+|++.
T Consensus 141 ~~C~~C~G~G~~~----~---~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 191 (369)
T PRK14288 141 SVCESCDGTGAKD----K---ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII 191 (369)
T ss_pred ccCCCCCCcccCC----C---CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc
Confidence 5899999998643 1 24679999999965 599999999763
No 62
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.22 E-value=0.0026 Score=52.44 Aligned_cols=13 Identities=38% Similarity=0.933 Sum_probs=6.9
Q ss_pred ccCCCCCCcceEE
Q 031276 104 LRCSFCMGTGSVT 116 (162)
Q Consensus 104 ~~C~~C~GtG~v~ 116 (162)
.+|+.|+|+|++.
T Consensus 100 ~~C~~C~G~G~~i 112 (186)
T TIGR02642 100 CKCPRCRGTGLIQ 112 (186)
T ss_pred CcCCCCCCeeEEe
Confidence 4555555555543
No 63
>PRK14289 chaperone protein DnaJ; Provisional
Probab=96.13 E-value=0.0023 Score=56.97 Aligned_cols=42 Identities=40% Similarity=0.875 Sum_probs=33.7
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 150 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~ 150 (162)
...|..|+|+|.... .....|+.|+|.|.+ +|+.|.|+|++.
T Consensus 154 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 210 (386)
T PRK14289 154 YVPCSHCHGTGAEGN------NGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII 210 (386)
T ss_pred ecccCCCCCCCCCCC------CCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc
Confidence 378999999997531 235679999999886 599999999764
No 64
>PRK14291 chaperone protein DnaJ; Provisional
Probab=96.11 E-value=0.0029 Score=56.34 Aligned_cols=41 Identities=37% Similarity=0.825 Sum_probs=32.6
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceee
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQ 149 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v 149 (162)
...|..|+|+|.... ....+|+.|+|.|.+ +|+.|+|+|.+
T Consensus 156 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~ 207 (382)
T PRK14291 156 YVPCEACGGTGYDPG------SGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL 207 (382)
T ss_pred eccCCCCccccCCCC------CCCccCCCCCCceEEEEecceEEEEecCCCCCCceEE
Confidence 368999999997531 134679999999975 79999999964
No 65
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.08 E-value=0.0029 Score=55.51 Aligned_cols=41 Identities=37% Similarity=0.791 Sum_probs=32.8
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 150 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~ 150 (162)
..|..|+|+|.... ....+|+.|+|.|.+ +|..|.|+|++.
T Consensus 144 ~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 199 (354)
T TIGR02349 144 ESCETCHGTGAKPG------TDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII 199 (354)
T ss_pred CcCCCCCCCCCCCC------CCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec
Confidence 68999999997531 125679999999853 699999999874
No 66
>PRK14290 chaperone protein DnaJ; Provisional
Probab=96.08 E-value=0.0037 Score=55.33 Aligned_cols=40 Identities=43% Similarity=0.956 Sum_probs=32.4
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCce---------------ecCCCCCCceeeC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGS---------------LTCTTCQGTGIQP 150 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~---------------v~C~~C~G~G~v~ 150 (162)
..|+.|+|+|... + ...+|+.|+|.|. .+|+.|.|.|++.
T Consensus 150 ~~C~~C~G~g~~~----~---~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~ 204 (365)
T PRK14290 150 AMCPDCSGTGAKN----G---KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP 204 (365)
T ss_pred ccCCCCccccCCC----C---CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc
Confidence 6899999999643 1 2458999999995 3799999999873
No 67
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.04 E-value=0.0041 Score=51.28 Aligned_cols=24 Identities=46% Similarity=0.981 Sum_probs=14.4
Q ss_pred eeeCCCCCCCcee-----cCCCCCCceee
Q 031276 126 FSKCINCDGVGSL-----TCTTCQGTGIQ 149 (162)
Q Consensus 126 ~~~C~~C~G~G~v-----~C~~C~G~G~v 149 (162)
..+|+.|+|+|++ +|+.|+|+|++
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v 127 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRF 127 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEE
Confidence 4456666666665 26666666655
No 68
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.97 E-value=0.012 Score=46.64 Aligned_cols=48 Identities=23% Similarity=0.428 Sum_probs=35.3
Q ss_pred cCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCCCCCCCceecC
Q 031276 92 ARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSLTC 140 (162)
Q Consensus 92 ~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v~C 140 (162)
..|.. |.|...+.|..|+|+=++............+|+.|+=-|.++|
T Consensus 100 ~~C~~-Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 100 GVCEG-CGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC 147 (147)
T ss_pred CCCCC-CCCcCeEECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence 34666 8888889999999998887543212335678888888887776
No 69
>PRK14293 chaperone protein DnaJ; Provisional
Probab=95.96 E-value=0.0053 Score=54.54 Aligned_cols=41 Identities=34% Similarity=0.804 Sum_probs=33.3
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceee
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQ 149 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v 149 (162)
...|..|+|+|.... ....+|+.|+|.|.+ +|..|.|.|++
T Consensus 143 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 198 (374)
T PRK14293 143 LETCETCRGSGAKPG------TGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQV 198 (374)
T ss_pred cccCCCCCCcCCCCC------CCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeE
Confidence 368999999997531 134689999999974 59999999987
No 70
>PRK14283 chaperone protein DnaJ; Provisional
Probab=95.96 E-value=0.0036 Score=55.63 Aligned_cols=41 Identities=37% Similarity=0.883 Sum_probs=33.1
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceee
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQ 149 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v 149 (162)
...|+.|+|+|... + ....+|+.|+|.|.+ +|..|+|+|++
T Consensus 146 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 201 (378)
T PRK14283 146 TKKCPVCNGSRAEP----G--SEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKI 201 (378)
T ss_pred eccCCCCCccccCC----C--CCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCcccee
Confidence 36899999999643 1 134679999999885 59999999987
No 71
>PRK14281 chaperone protein DnaJ; Provisional
Probab=95.80 E-value=0.0051 Score=55.15 Aligned_cols=40 Identities=43% Similarity=0.911 Sum_probs=32.6
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 150 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~ 150 (162)
..|..|+|+|... + ...+|+.|+|.|.+ +|+.|+|+|.+.
T Consensus 164 ~~C~~C~G~G~~~----~---~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 218 (397)
T PRK14281 164 VPCKECNGTGSKT----G---ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV 218 (397)
T ss_pred ecCCCCCCcccCC----C---CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee
Confidence 6899999999753 2 24689999999964 599999999873
No 72
>PRK14292 chaperone protein DnaJ; Provisional
Probab=95.64 E-value=0.0058 Score=54.07 Aligned_cols=43 Identities=28% Similarity=0.715 Sum_probs=33.4
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 150 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~ 150 (162)
...|..|+|+|.... -....+|+.|+|.|.+ +|..|+|.|+..
T Consensus 139 ~~~C~~C~G~G~~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 196 (371)
T PRK14292 139 LTECEHCHGSRTEPG-----GKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII 196 (371)
T ss_pred eecCCCCcccccCCC-----CCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec
Confidence 368999999997421 1134679999999975 599999999874
No 73
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=89.58 E-value=0.17 Score=43.46 Aligned_cols=29 Identities=41% Similarity=0.639 Sum_probs=22.8
Q ss_pred ceeeCCCCCCCceecCCCCCCceeeCccc
Q 031276 125 EFSKCINCDGVGSLTCTTCQGTGIQPRYL 153 (162)
Q Consensus 125 ~~~~C~~C~G~G~v~C~~C~G~G~v~~~l 153 (162)
...++..-.|++.++|++|+|+|++++-.
T Consensus 26 ~~~py~e~~g~~~vtCPTCqGtGrIP~eq 54 (238)
T PF07092_consen 26 SSFPYVEFTGRDSVTCPTCQGTGRIPREQ 54 (238)
T ss_pred ccCccccccCCCCCcCCCCcCCccCCccc
Confidence 34567777888888999999999988765
No 74
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.96 E-value=0.74 Score=46.03 Aligned_cols=39 Identities=26% Similarity=0.570 Sum_probs=20.9
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCceecCCCCCCceeeCccc
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYL 153 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v~C~~C~G~G~v~~~l 153 (162)
-.|+.|.|.|.+.... .++.. -.++|+.|+|+.+.+..|
T Consensus 737 G~C~~C~G~G~~~~~~-~f~~~----------~~~~C~~C~G~R~~~e~l 775 (924)
T TIGR00630 737 GRCEACQGDGVIKIEM-HFLPD----------VYVPCEVCKGKRYNRETL 775 (924)
T ss_pred CCCCCCccceEEEEEc-cCCCC----------cccCCCCcCCceeChHHH
Confidence 3577777777776543 22111 123566666666554443
No 75
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=80.13 E-value=1.4 Score=44.18 Aligned_cols=15 Identities=40% Similarity=1.099 Sum_probs=10.8
Q ss_pred cCCCCCCcceEEEEe
Q 031276 105 RCSFCMGTGSVTVEL 119 (162)
Q Consensus 105 ~C~~C~GtG~v~~~~ 119 (162)
.|+.|.|.|.+....
T Consensus 740 ~C~~C~G~G~~~~~~ 754 (943)
T PRK00349 740 RCEACQGDGVIKIEM 754 (943)
T ss_pred CCCcccccceEEEEe
Confidence 577788887777554
No 76
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=76.53 E-value=1 Score=38.66 Aligned_cols=21 Identities=29% Similarity=0.524 Sum_probs=16.4
Q ss_pred CCCccccCCCCCCcceEEEEe
Q 031276 99 LPLQWLRCSFCMGTGSVTVEL 119 (162)
Q Consensus 99 ~G~G~~~C~~C~GtG~v~~~~ 119 (162)
.|.+-.+|++|+|+|++.+.+
T Consensus 34 ~g~~~vtCPTCqGtGrIP~eq 54 (238)
T PF07092_consen 34 TGRDSVTCPTCQGTGRIPREQ 54 (238)
T ss_pred cCCCCCcCCCCcCCccCCccc
Confidence 355568999999999987654
No 77
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=75.54 E-value=1.8 Score=38.93 Aligned_cols=42 Identities=33% Similarity=0.781 Sum_probs=33.0
Q ss_pred CccccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee----------------cCCCCCCceee
Q 031276 101 LQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL----------------TCTTCQGTGIQ 149 (162)
Q Consensus 101 ~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v----------------~C~~C~G~G~v 149 (162)
+....|+.|+|+|.... ....|..|.|+|.. .|..|+|.|..
T Consensus 125 ~~~~iCs~C~GsGgksg-------~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~ 182 (337)
T KOG0712|consen 125 SRNFICSKCSGSGGKSG-------SAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGET 182 (337)
T ss_pred ccCccCCcCCCCCCCCC-------CCCCCCCCCCCCceeEEEeccccccccceeEeccCCCcccc
Confidence 44578999999876542 34479999999865 59999999976
No 78
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.16 E-value=1.5 Score=43.81 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=8.5
Q ss_pred cCCCCCCcceEEE
Q 031276 105 RCSFCMGTGSVTV 117 (162)
Q Consensus 105 ~C~~C~GtG~v~~ 117 (162)
.|+.|+|.|.+..
T Consensus 276 ~Cp~C~G~G~~~~ 288 (924)
T TIGR00630 276 ACPECSGLGIKQE 288 (924)
T ss_pred CCCCCccceeeee
Confidence 4777777776543
No 79
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=72.80 E-value=2.8 Score=33.11 Aligned_cols=11 Identities=27% Similarity=0.942 Sum_probs=5.5
Q ss_pred cCCCCCCceee
Q 031276 139 TCTTCQGTGIQ 149 (162)
Q Consensus 139 ~C~~C~G~G~v 149 (162)
+|+.|+=.|.+
T Consensus 135 rC~~Cnengl~ 145 (147)
T cd03031 135 RCPECNENGLV 145 (147)
T ss_pred ECCCCCccccc
Confidence 45555554443
No 80
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=72.43 E-value=3.8 Score=41.17 Aligned_cols=30 Identities=30% Similarity=0.720 Sum_probs=15.3
Q ss_pred cCCCCCCcceEEEEeCCCccceeeCCCCCC
Q 031276 105 RCSFCMGTGSVTVELGGDEREFSKCINCDG 134 (162)
Q Consensus 105 ~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G 134 (162)
+|..|.|.|.+.....--.....+|+.|+|
T Consensus 732 RCe~C~GdG~ikIeM~FLpdVyv~CevC~G 761 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLPDVYVPCEVCHG 761 (935)
T ss_pred CCccccCCceEEEEeccCCCceeeCCCcCC
Confidence 566666666666554211223344555544
No 81
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=72.20 E-value=2.9 Score=44.81 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=17.2
Q ss_pred cCCCCCCcceEEEEeCCCccceeeCCCCCCC
Q 031276 105 RCSFCMGTGSVTVELGGDEREFSKCINCDGV 135 (162)
Q Consensus 105 ~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~ 135 (162)
+|+.|.|.|.+.....-..-...+|+.|+|+
T Consensus 1609 rC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~ 1639 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYALEKRPCPTCSGF 1639 (1809)
T ss_pred CCCCCccCceEEEecccCCCcccCCCCCCCc
Confidence 5888888888776542111133445555544
No 82
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=68.62 E-value=8.1 Score=25.15 Aligned_cols=34 Identities=24% Similarity=0.497 Sum_probs=18.3
Q ss_pred ccCCCCCCcceEEEEeCC--CccceeeCCCCCCCce
Q 031276 104 LRCSFCMGTGSVTVELGG--DEREFSKCINCDGVGS 137 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g--~~~~~~~C~~C~G~G~ 137 (162)
..|++|.|.......... .......|..|+..|.
T Consensus 2 kPCPfCGg~~~~~~~~~~~~~~~~~~~C~~Cga~~~ 37 (53)
T TIGR03655 2 KPCPFCGGADVYLRRGFDPLDLSHYFECSTCGASGP 37 (53)
T ss_pred CCCCCCCCcceeeEeccCCCCCEEEEECCCCCCCcc
Confidence 579999998883321111 1112235666665554
No 83
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.39 E-value=3.6 Score=36.21 Aligned_cols=25 Identities=28% Similarity=0.733 Sum_probs=20.8
Q ss_pred eeCCCCCCCceecCCCCCCceeeCc
Q 031276 127 SKCINCDGVGSLTCTTCQGTGIQPR 151 (162)
Q Consensus 127 ~~C~~C~G~G~v~C~~C~G~G~v~~ 151 (162)
..|..|+|.+.++|..|+|+-++..
T Consensus 230 ~~C~~CGg~rFlpC~~C~GS~kv~~ 254 (281)
T KOG2824|consen 230 GVCESCGGARFLPCSNCHGSCKVHE 254 (281)
T ss_pred CcCCCcCCcceEecCCCCCceeeee
Confidence 5799999999999999998877644
No 84
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=67.63 E-value=2.9 Score=41.99 Aligned_cols=28 Identities=29% Similarity=0.841 Sum_probs=23.6
Q ss_pred eeCCCCCCCcee------------cCCCCCCceeeCcccc
Q 031276 127 SKCINCDGVGSL------------TCTTCQGTGIQPRYLD 154 (162)
Q Consensus 127 ~~C~~C~G~G~v------------~C~~C~G~G~v~~~l~ 154 (162)
-.|+.|.|.|.+ +|+.|+|+.+.+.-|+
T Consensus 739 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~ 778 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRETLE 778 (943)
T ss_pred CCCCcccccceEEEEeccCCCccccCccccCccccccceE
Confidence 469999999987 6999999988776553
No 85
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=65.84 E-value=4.9 Score=39.50 Aligned_cols=91 Identities=15% Similarity=0.293 Sum_probs=53.8
Q ss_pred CCCCCceec-ccCcccEEE---EEEeeeeee-----eecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCC
Q 031276 39 SAPYPCIRA-ELDQNTVVA---ISVGLVSVA-----VGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFC 109 (162)
Q Consensus 39 ~~~~p~~~~-~ld~~T~~~---i~i~~~eaa-----~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C 109 (162)
.+.+|.+.. |+.++-... ++-.|.+++ .|...=+++.+..- +.-..|+--|.. ..|++|
T Consensus 383 ~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGy-s~~l~C~~Cg~v-----------~~Cp~C 450 (730)
T COG1198 383 RARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGY-APLLLCRDCGYI-----------AECPNC 450 (730)
T ss_pred ccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCc-cceeecccCCCc-----------ccCCCC
Confidence 567888777 554421111 222233333 56566666666433 111334333443 799999
Q ss_pred CCcceEEEEeCCCccceeeCCCCCCCcee--cCCCCCCc
Q 031276 110 MGTGSVTVELGGDEREFSKCINCDGVGSL--TCTTCQGT 146 (162)
Q Consensus 110 ~GtG~v~~~~~g~~~~~~~C~~C~G~G~v--~C~~C~G~ 146 (162)
...=..++. .+...|+.|+-...+ .|+.|.+.
T Consensus 451 d~~lt~H~~-----~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 451 DSPLTLHKA-----TGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred CcceEEecC-----CCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 976333322 267889999999777 79999887
No 86
>PF14353 CpXC: CpXC protein
Probab=63.29 E-value=11 Score=28.14 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=23.8
Q ss_pred ccCCCCCCcceEEEEe--CCC------------ccceeeCCCCCCCcee
Q 031276 104 LRCSFCMGTGSVTVEL--GGD------------EREFSKCINCDGVGSL 138 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~--~g~------------~~~~~~C~~C~G~G~v 138 (162)
.+|+.|+..+.+.... ... .-...+||.|+..+.+
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 6899999999877665 111 1145678888777665
No 87
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=62.35 E-value=4.2 Score=35.38 Aligned_cols=44 Identities=34% Similarity=0.816 Sum_probs=33.2
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeCcc
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQPRY 152 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~~~ 152 (162)
...|..|.|.|... + .....|..|.|.|++ +|..|.|.|.+...
T Consensus 164 ~~~~~t~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~ 218 (288)
T KOG0715|consen 164 LSDCETCFGSGAEE----G--AKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRD 218 (288)
T ss_pred ecccccccCcCccc----c--cccccchhhhCcccccccccCCcceeecccccccceeccc
Confidence 36899999999332 2 256789999999933 49999999977543
No 88
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=61.70 E-value=4 Score=24.96 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=16.1
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCD 133 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~ 133 (162)
.+|++|+..-.+...+-.......+|+.|+
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~ 32 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCG 32 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCC
Confidence 578888877665533211112345566654
No 89
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=57.72 E-value=9 Score=24.25 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=15.3
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDG 134 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G 134 (162)
..|+.|.|+...+....-...+..-|..|++
T Consensus 4 ~pCP~CGG~DrFri~~d~~~~G~~~C~~C~~ 34 (40)
T PF08273_consen 4 GPCPICGGKDRFRIFDDKDGRGTWICRQCGG 34 (40)
T ss_dssp E--TTTT-TTTEEEETT----S-EEETTTTB
T ss_pred CCCCCCcCccccccCcCcccCCCEECCCCCC
Confidence 5899999988877443212224556777644
No 90
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=56.51 E-value=5.2 Score=42.99 Aligned_cols=26 Identities=42% Similarity=0.882 Sum_probs=16.5
Q ss_pred eCCCCCCCcee------------cCCCCCCceeeCccc
Q 031276 128 KCINCDGVGSL------------TCTTCQGTGIQPRYL 153 (162)
Q Consensus 128 ~C~~C~G~G~v------------~C~~C~G~G~v~~~l 153 (162)
+|+.|.|.|.+ +|..|+|+.+.+.-|
T Consensus 1609 rC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L 1646 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQ 1646 (1809)
T ss_pred CCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHH
Confidence 57777777765 577777766554433
No 91
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=55.17 E-value=17 Score=23.69 Aligned_cols=16 Identities=31% Similarity=0.829 Sum_probs=12.0
Q ss_pred cccCCCCCCcceEEEEe
Q 031276 103 WLRCSFCMGTGSVTVEL 119 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~ 119 (162)
...|++| |...+....
T Consensus 3 LkPCPFC-G~~~~~~~~ 18 (61)
T PF14354_consen 3 LKPCPFC-GSADVLIRQ 18 (61)
T ss_pred CcCCCCC-CCcceEeec
Confidence 3689999 877776654
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.29 E-value=15 Score=34.15 Aligned_cols=39 Identities=21% Similarity=0.435 Sum_probs=28.1
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee--cCCCCCCce
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL--TCTTCQGTG 147 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v--~C~~C~G~G 147 (162)
.+|+.|.+.=..+.. .....|+.|+-+-.+ .|+.|.+.-
T Consensus 223 ~~C~~C~~~l~~h~~-----~~~l~Ch~Cg~~~~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 223 LCCPNCDVSLTYHKK-----EGKLRCHYCGYQEPIPKTCPQCGSED 263 (505)
T ss_pred cCCCCCCCceEEecC-----CCeEEcCCCcCcCCCCCCCCCCCCCe
Confidence 789999875333321 246789999987776 799997753
No 93
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=51.68 E-value=5.7 Score=29.33 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=21.8
Q ss_pred ccCCCCCCcceEEEEe----CCCccceeeCCCCCCCcee
Q 031276 104 LRCSFCMGTGSVTVEL----GGDEREFSKCINCDGVGSL 138 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~----~g~~~~~~~C~~C~G~G~v 138 (162)
..|..|+|+|.+.-.. +.++.....|..|.|.|--
T Consensus 6 ~~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 6 DSCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYS 44 (95)
T ss_pred CCcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCC
Confidence 5788999999654222 1234445567777777653
No 94
>PRK14873 primosome assembly protein PriA; Provisional
Probab=49.28 E-value=10 Score=36.72 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=52.1
Q ss_pred CCCCCCceec-ccCc-ccE----E---EEEEeeeeee-----eecceeEEEEeecCCCcccCcccccccCccccCCCCcc
Q 031276 38 SSAPYPCIRA-ELDQ-NTV----V---AISVGLVSVA-----VGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQW 103 (162)
Q Consensus 38 ~~~~~p~~~~-~ld~-~T~----~---~i~i~~~eaa-----~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~ 103 (162)
..+.+|.++. |+.+ +.. . .++-.+.+++ .| .+=+++.+... +.-..|..-|..
T Consensus 326 ~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGy-ap~l~C~~Cg~~----------- 392 (665)
T PRK14873 326 VRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGY-VPSLACARCRTP----------- 392 (665)
T ss_pred ccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCC-CCeeEhhhCcCe-----------
Confidence 3457898888 6643 111 0 1333344433 36 66666666443 112344444443
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-cCCCCCCce
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-TCTTCQGTG 147 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-~C~~C~G~G 147 (162)
.+|++|.+.=..+.. .....|+.|+-.-.- .|+.|.+.-
T Consensus 393 ~~C~~C~~~L~~h~~-----~~~l~Ch~CG~~~~p~~Cp~Cgs~~ 432 (665)
T PRK14873 393 ARCRHCTGPLGLPSA-----GGTPRCRWCGRAAPDWRCPRCGSDR 432 (665)
T ss_pred eECCCCCCceeEecC-----CCeeECCCCcCCCcCccCCCCcCCc
Confidence 799999985444321 246789999875321 799998763
No 95
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=48.22 E-value=7 Score=27.13 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.3
Q ss_pred EEEEEEeeeeeeeecceeE
Q 031276 54 VVAISVGLVSVAVGIGIPI 72 (162)
Q Consensus 54 ~~~i~i~~~eaa~G~~~~i 72 (162)
.+.+.|+|.||+.|.++++
T Consensus 3 ~~~~~I~l~~al~G~~i~i 21 (81)
T PF01556_consen 3 YCTIPISLKEALLGGTISI 21 (81)
T ss_dssp EEEEEEEHHHHHH-EEEEE
T ss_pred EEEEEeCHHHHhCCCEEEE
Confidence 5789999999999999888
No 96
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=48.01 E-value=25 Score=21.19 Aligned_cols=25 Identities=40% Similarity=0.840 Sum_probs=16.9
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCD 133 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~ 133 (162)
..|..|++.|-+...+ ....|+.|+
T Consensus 4 ~~C~~C~~~~i~~~~~-----~~~~C~~Cg 28 (33)
T PF08792_consen 4 KKCSKCGGNGIVNKED-----DYEVCIFCG 28 (33)
T ss_pred eEcCCCCCCeEEEecC-----CeEEcccCC
Confidence 6788898888775332 455677665
No 97
>PF14369 zf-RING_3: zinc-finger
Probab=45.67 E-value=19 Score=21.97 Aligned_cols=10 Identities=50% Similarity=1.069 Sum_probs=5.7
Q ss_pred cCCCCCCcceE
Q 031276 105 RCSFCMGTGSV 115 (162)
Q Consensus 105 ~C~~C~GtG~v 115 (162)
.|+.|+| |++
T Consensus 23 ~CP~C~~-gFv 32 (35)
T PF14369_consen 23 ACPRCHG-GFV 32 (35)
T ss_pred CCcCCCC-cEe
Confidence 4666664 554
No 98
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=44.64 E-value=13 Score=37.64 Aligned_cols=28 Identities=29% Similarity=0.837 Sum_probs=22.7
Q ss_pred eeCCCCCCCcee------------cCCCCCCceeeCcccc
Q 031276 127 SKCINCDGVGSL------------TCTTCQGTGIQPRYLD 154 (162)
Q Consensus 127 ~~C~~C~G~G~v------------~C~~C~G~G~v~~~l~ 154 (162)
-+|..|+|.|.+ +|..|+|+-+-..-||
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~EtLe 770 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRETLE 770 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCcccccceEE
Confidence 479999999987 7999999876655443
No 99
>PRK05580 primosome assembly protein PriA; Validated
Probab=42.27 E-value=24 Score=33.99 Aligned_cols=38 Identities=18% Similarity=0.510 Sum_probs=27.2
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee--cCCCCCCc
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL--TCTTCQGT 146 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v--~C~~C~G~ 146 (162)
.+|+.|.+.=..+. ......|+.|+-.-.+ .|+.|.+.
T Consensus 391 ~~C~~C~~~l~~h~-----~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 391 AECPHCDASLTLHR-----FQRRLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred cCCCCCCCceeEEC-----CCCeEECCCCcCCCCCCCCCCCCcCC
Confidence 68999998422221 1356789999988665 79999775
No 100
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=41.31 E-value=14 Score=22.02 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=14.5
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDG 134 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G 134 (162)
.+|++|+-.=++....-........|+.|+.
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~ 33 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGH 33 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCC
Confidence 5677787654443211011112455666653
No 101
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=36.97 E-value=23 Score=30.59 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=24.0
Q ss_pred CcccEEEEEEeeeeeeeecceeEEEEeec
Q 031276 50 DQNTVVAISVGLVSVAVGIGIPIFYETQI 78 (162)
Q Consensus 50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~ 78 (162)
.++-.+.+.|+|+|++.|..+.+.+.+.+
T Consensus 117 g~di~~~v~isLee~~~G~~k~i~~~~~~ 145 (306)
T PRK10266 117 GHDIEIEVAVFLEETLTEHKRTISYNLPV 145 (306)
T ss_pred CCceEEEEEEEHHHhcCCceEEEEEeccc
Confidence 35668899999999999999988876643
No 102
>PRK14299 chaperone protein DnaJ; Provisional
Probab=35.55 E-value=18 Score=31.11 Aligned_cols=26 Identities=8% Similarity=-0.034 Sum_probs=22.5
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEe
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYET 76 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~ 76 (162)
++..+.+.|+|+||+.|..+.+.+..
T Consensus 130 ~dl~~~l~isL~ea~~G~~~~i~l~g 155 (291)
T PRK14299 130 RDLEAELPLTLEEAYRGGEKVVEVAG 155 (291)
T ss_pred CCEEEEEEecHHHHhCCCeEEEeeCC
Confidence 46789999999999999999987754
No 103
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=31.45 E-value=45 Score=33.75 Aligned_cols=58 Identities=26% Similarity=0.475 Sum_probs=36.6
Q ss_pred CccccCCCCCCc--ceEEEEeCCCccceeeCCCCCCC--cee----cCCCCCCceeeCcccccccccCC
Q 031276 101 LQWLRCSFCMGT--GSVTVELGGDEREFSKCINCDGV--GSL----TCTTCQGTGIQPRYLDRREFKDD 161 (162)
Q Consensus 101 ~G~~~C~~C~Gt--G~v~~~~~g~~~~~~~C~~C~G~--G~v----~C~~C~G~G~v~~~l~~r~~~~~ 161 (162)
++..+|+.||-. |.....-.-....+.+|..|.-. |.- .|+.|.|+ ..||+|++..|.
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 859 (1006)
T PRK12775 794 TGVATCPKCHRPLEGDEEYVCCATSELQWRCDDCGKVSEGFAFPYGMCPACGGK---LQALDRRKVEDA 859 (1006)
T ss_pred CCCccCcccCCCCCCCceeEEecCcceeeehhhhccccccccCCcCcCcccccc---hhhhhccCcccc
Confidence 456799999853 21111110112256789988643 222 79999887 699999998874
No 104
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=30.10 E-value=70 Score=19.53 Aligned_cols=6 Identities=33% Similarity=0.866 Sum_probs=4.0
Q ss_pred CCCCCC
Q 031276 106 CSFCMG 111 (162)
Q Consensus 106 C~~C~G 111 (162)
|+.|+.
T Consensus 2 CP~C~~ 7 (41)
T PF13453_consen 2 CPRCGT 7 (41)
T ss_pred cCCCCc
Confidence 677765
No 105
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=29.82 E-value=27 Score=31.96 Aligned_cols=14 Identities=43% Similarity=0.857 Sum_probs=11.6
Q ss_pred ccCCCCCCcceEEE
Q 031276 104 LRCSFCMGTGSVTV 117 (162)
Q Consensus 104 ~~C~~C~GtG~v~~ 117 (162)
..|+.|+|+|++..
T Consensus 391 ~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 391 TVCPHCSGTGIVKT 404 (414)
T ss_pred CCCCCCcCeeEEcc
Confidence 57999999999863
No 106
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=28.25 E-value=30 Score=21.01 Aligned_cols=13 Identities=15% Similarity=0.560 Sum_probs=7.8
Q ss_pred ccCCCCCCcceEE
Q 031276 104 LRCSFCMGTGSVT 116 (162)
Q Consensus 104 ~~C~~C~GtG~v~ 116 (162)
.+|+.|+-.=.+.
T Consensus 3 i~Cp~C~~~y~i~ 15 (36)
T PF13717_consen 3 ITCPNCQAKYEID 15 (36)
T ss_pred EECCCCCCEEeCC
Confidence 5677777654443
No 107
>PRK04023 DNA polymerase II large subunit; Validated
Probab=27.88 E-value=37 Score=35.04 Aligned_cols=33 Identities=27% Similarity=0.613 Sum_probs=21.8
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-cCCCCCCc
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-TCTTCQGT 146 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-~C~~C~G~ 146 (162)
..|+.|+.. + .....|+.|.-.+.. .|+.|.-.
T Consensus 639 frCP~CG~~---T-------e~i~fCP~CG~~~~~y~CPKCG~E 672 (1121)
T PRK04023 639 RRCPFCGTH---T-------EPVYRCPRCGIEVEEDECEKCGRE 672 (1121)
T ss_pred ccCCCCCCC---C-------CcceeCccccCcCCCCcCCCCCCC
Confidence 689999875 1 133568888665543 78888543
No 108
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=27.28 E-value=67 Score=25.48 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=9.5
Q ss_pred CCCccccCCCCCC
Q 031276 99 LPLQWLRCSFCMG 111 (162)
Q Consensus 99 ~G~G~~~C~~C~G 111 (162)
.|.|...|..|+-
T Consensus 108 ~g~G~l~C~~Cg~ 120 (146)
T PF07295_consen 108 VGPGTLVCENCGH 120 (146)
T ss_pred ecCceEecccCCC
Confidence 5677788888864
No 109
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=26.95 E-value=33 Score=30.89 Aligned_cols=20 Identities=45% Similarity=1.152 Sum_probs=16.1
Q ss_pred eeeCCCCCCCceecCCCCCCcee
Q 031276 126 FSKCINCDGVGSLTCTTCQGTGI 148 (162)
Q Consensus 126 ~~~C~~C~G~G~v~C~~C~G~G~ 148 (162)
...|..|+|.| |..|++.|+
T Consensus 260 dv~~~~~~g~g---c~~ck~~~W 279 (339)
T PRK00488 260 DVSCFKCGGKG---CRVCKGTGW 279 (339)
T ss_pred EEEEeccCCCc---ccccCCCCc
Confidence 45799999876 889998884
No 110
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=26.56 E-value=60 Score=20.16 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=16.2
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCD 133 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~ 133 (162)
..|+.|.|+...+... -...+...|.+|.
T Consensus 4 ~pCP~CGG~DrFr~~d-~~g~G~~~C~~Cg 32 (37)
T smart00778 4 GPCPNCGGSDRFRFDD-KDGRGTWFCSVCG 32 (37)
T ss_pred cCCCCCCCcccccccc-CCCCcCEEeCCCC
Confidence 5788888887766321 1112444566553
No 111
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=26.00 E-value=58 Score=20.06 Aligned_cols=9 Identities=22% Similarity=0.711 Sum_probs=5.8
Q ss_pred cCCCCCCcc
Q 031276 105 RCSFCMGTG 113 (162)
Q Consensus 105 ~C~~C~GtG 113 (162)
+|+.|..+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 467776655
No 112
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=25.20 E-value=78 Score=26.48 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=8.8
Q ss_pred eecCCCcccCcccccc
Q 031276 76 TQIDNAYDFPIFGAGQ 91 (162)
Q Consensus 76 ~~~~c~~~~~C~GsG~ 91 (162)
..++...|+.|...|=
T Consensus 56 ~~~~~~~C~nCg~~GH 71 (190)
T COG5082 56 IREENPVCFNCGQNGH 71 (190)
T ss_pred ccccccccchhcccCc
Confidence 3333344488876664
No 113
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=25.18 E-value=93 Score=27.68 Aligned_cols=7 Identities=29% Similarity=1.013 Sum_probs=3.9
Q ss_pred cCCCCCC
Q 031276 139 TCTTCQG 145 (162)
Q Consensus 139 ~C~~C~G 145 (162)
.|.+|++
T Consensus 254 ~C~~C~~ 260 (309)
T PRK03564 254 SCGDCGT 260 (309)
T ss_pred ecccccc
Confidence 4666653
No 114
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=23.76 E-value=64 Score=34.09 Aligned_cols=32 Identities=25% Similarity=0.633 Sum_probs=18.0
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCC------ceecCCCCCC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGV------GSLTCTTCQG 145 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~------G~v~C~~C~G 145 (162)
..|+.|...=. ....|+.|+.. |...|+.|.-
T Consensus 680 ~fCP~CGs~te----------~vy~CPsCGaev~~des~a~~CP~CGt 717 (1337)
T PRK14714 680 NRCPDCGTHTE----------PVYVCPDCGAEVPPDESGRVECPRCDV 717 (1337)
T ss_pred ccCcccCCcCC----------CceeCccCCCccCCCccccccCCCCCC
Confidence 47777765411 12367777662 2336888854
No 115
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=23.19 E-value=71 Score=28.30 Aligned_cols=8 Identities=25% Similarity=0.663 Sum_probs=3.8
Q ss_pred cCCCCCCc
Q 031276 105 RCSFCMGT 112 (162)
Q Consensus 105 ~C~~C~Gt 112 (162)
.|+.|.+.
T Consensus 186 ~CPvCGs~ 193 (305)
T TIGR01562 186 LCPACGSP 193 (305)
T ss_pred cCCCCCCh
Confidence 44555444
No 116
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=22.85 E-value=38 Score=31.03 Aligned_cols=14 Identities=29% Similarity=0.646 Sum_probs=8.8
Q ss_pred ceeeCCCCCCCcee
Q 031276 125 EFSKCINCDGVGSL 138 (162)
Q Consensus 125 ~~~~C~~C~G~G~v 138 (162)
...+||.|+|+|.+
T Consensus 389 ~~~~Cp~C~G~G~v 402 (414)
T TIGR00757 389 LGTVCPHCSGTGIV 402 (414)
T ss_pred hcCCCCCCcCeeEE
Confidence 34567777776665
No 117
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=22.32 E-value=91 Score=19.28 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=15.6
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDG 134 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G 134 (162)
-+|..|+..=.+.... .. .....||.|++
T Consensus 6 y~C~~Cg~~fe~~~~~-~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 6 YRCEECGHEFEVLQSI-SE-DDPVPCPECGS 34 (42)
T ss_pred EEeCCCCCEEEEEEEc-CC-CCCCcCCCCCC
Confidence 4677776655444332 11 34456777665
No 118
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=21.19 E-value=68 Score=26.10 Aligned_cols=31 Identities=23% Similarity=0.658 Sum_probs=20.5
Q ss_pred cCCCCCCcceEEEEeC----C-CccceeeCCCCCCC
Q 031276 105 RCSFCMGTGSVTVELG----G-DEREFSKCINCDGV 135 (162)
Q Consensus 105 ~C~~C~GtG~v~~~~~----g-~~~~~~~C~~C~G~ 135 (162)
.||+|+-........+ | ..+....|+.|+++
T Consensus 2 ~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~R 37 (156)
T COG1327 2 KCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGER 37 (156)
T ss_pred CCCCCCCCCCeeeecccccccchhhhhhcccccccc
Confidence 6999988876554442 2 24456678888764
No 119
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=20.63 E-value=91 Score=18.93 Aligned_cols=28 Identities=32% Similarity=0.616 Sum_probs=12.4
Q ss_pred cCCCCCCcceEEEEeCCCccceeeCCCCC
Q 031276 105 RCSFCMGTGSVTVELGGDEREFSKCINCD 133 (162)
Q Consensus 105 ~C~~C~GtG~v~~~~~g~~~~~~~C~~C~ 133 (162)
-|+.|.+.=..... -|....+..|+.|+
T Consensus 2 fC~~CG~~l~~~ip-~gd~r~R~vC~~Cg 29 (34)
T PF14803_consen 2 FCPQCGGPLERRIP-EGDDRERLVCPACG 29 (34)
T ss_dssp B-TTT--B-EEE---TT-SS-EEEETTTT
T ss_pred ccccccChhhhhcC-CCCCccceECCCCC
Confidence 37778776222222 35556677788875
No 120
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=20.30 E-value=1.6e+02 Score=17.93 Aligned_cols=29 Identities=24% Similarity=0.528 Sum_probs=16.3
Q ss_pred cCCCCCCcceEEEEeCC-----CccceeeCCCCC
Q 031276 105 RCSFCMGTGSVTVELGG-----DEREFSKCINCD 133 (162)
Q Consensus 105 ~C~~C~GtG~v~~~~~g-----~~~~~~~C~~C~ 133 (162)
+|+.|+....+..+.+. .+...-.|..|+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~ 35 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCG 35 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSST
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCC
Confidence 68899988876654421 234455677775
Done!