Query 031276
Match_columns 162
No_of_seqs 207 out of 961
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 18:53:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctt_A DNAJ homolog subfamily 99.8 3.4E-20 1.1E-24 135.5 2.1 89 52-150 3-94 (104)
2 1nlt_A Protein YDJ1, mitochond 99.6 3.5E-16 1.2E-20 129.8 5.9 90 51-150 12-109 (248)
3 1exk_A DNAJ protein; extended 99.5 1.2E-14 4E-19 100.5 3.9 74 67-150 1-77 (79)
4 3pmq_A Decaheme cytochrome C M 98.1 3.1E-08 1.1E-12 92.8 -7.3 85 54-147 168-281 (669)
5 1exk_A DNAJ protein; extended 98.1 1.3E-06 4.4E-11 59.7 2.4 42 103-150 11-63 (79)
6 2ctt_A DNAJ homolog subfamily 97.7 2.1E-05 7.1E-10 56.7 2.7 42 103-150 28-80 (104)
7 3lcz_A YCZA, inhibitor of trap 97.4 6.3E-05 2.2E-09 49.4 2.6 26 125-150 8-36 (53)
8 2bx9_A Anti-trap, AT, tryptoph 97.1 0.00027 9.2E-09 46.3 2.7 24 127-150 10-36 (53)
9 1nlt_A Protein YDJ1, mitochond 97.1 0.00014 4.8E-09 59.9 1.3 40 104-150 39-93 (248)
10 2bx9_A Anti-trap, AT, tryptoph 96.8 0.00069 2.4E-08 44.3 2.8 26 104-138 10-35 (53)
11 3lcz_A YCZA, inhibitor of trap 96.8 0.00069 2.4E-08 44.3 2.8 26 104-138 10-35 (53)
12 3agx_A DNAJ homolog subfamily 94.1 0.011 3.9E-07 46.3 0.6 26 51-76 3-28 (181)
13 2q2g_A HSP40 protein, heat sho 91.2 0.048 1.7E-06 42.6 0.6 30 51-80 4-33 (180)
14 1c3g_A Heat shock protein 40; 86.7 0.18 6.1E-06 38.9 0.8 26 52-77 2-27 (170)
15 3pmq_A Decaheme cytochrome C M 67.8 0.45 1.6E-05 44.7 -2.6 43 103-148 191-257 (669)
16 3lz8_A Putative chaperone DNAJ 63.2 2.2 7.6E-05 36.3 1.1 30 51-80 141-170 (329)
17 1dl6_A Transcription factor II 43.5 21 0.00073 22.8 3.1 19 135-154 28-46 (58)
18 3ts2_A Protein LIN-28 homolog 40.7 33 0.0011 25.7 4.3 39 103-142 97-137 (148)
19 3nyb_B Protein AIR2; polya RNA 37.1 27 0.00091 24.0 3.0 52 84-142 9-64 (83)
20 1pft_A TFIIB, PFTFIIBN; N-term 34.0 16 0.00053 22.3 1.2 9 135-143 22-30 (50)
21 1xao_A YDJ1, mitochondrial pro 33.0 11 0.00036 27.3 0.4 22 52-73 8-29 (121)
22 2vf7_A UVRA2, excinuclease ABC 32.2 27 0.00092 33.4 3.1 32 105-136 640-671 (842)
23 3i38_A Putative chaperone DNAJ 31.8 9.9 0.00034 27.1 0.0 22 52-73 13-34 (109)
24 2r6f_A Excinuclease ABC subuni 30.2 35 0.0012 33.4 3.5 31 105-135 755-785 (972)
25 2lli_A Protein AIR2; RNA surve 29.7 35 0.0012 24.3 2.7 11 128-138 66-76 (124)
26 3j20_Y 30S ribosomal protein S 25.1 62 0.0021 20.2 2.9 12 104-116 20-31 (50)
27 2ygr_A Uvrabc system protein A 25.0 35 0.0012 33.4 2.5 15 139-153 302-316 (993)
28 1d4d_A Flavocytochrome C fumar 25.0 3.4 0.00012 36.7 -4.2 44 103-146 36-91 (572)
29 2ihx_A Nucleocapsid (NC) prote 24.6 22 0.00077 22.6 0.8 14 103-116 4-17 (61)
30 2ygr_A Uvrabc system protein A 22.6 58 0.002 31.9 3.5 31 105-135 773-803 (993)
31 1ltl_A DNA replication initiat 22.3 81 0.0028 25.5 3.9 10 104-113 157-166 (279)
32 2fiy_A Protein FDHE homolog; F 21.7 85 0.0029 26.4 4.0 49 104-152 183-237 (309)
33 2r6f_A Excinuclease ABC subuni 21.3 45 0.0015 32.6 2.4 23 128-150 755-789 (972)
No 1
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.4e-20 Score=135.49 Aligned_cols=89 Identities=22% Similarity=0.412 Sum_probs=80.9
Q ss_pred ccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCCC
Q 031276 52 NTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCIN 131 (162)
Q Consensus 52 ~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~~ 131 (162)
+..+.|+|+|+||++|++++|.|++.+.| ..|+|+|++ .|+...+|+.|+|+|++...+ |.|+...+|+.
T Consensus 3 ~~~~~l~vslee~~~G~~~~i~~~~~~~C---~~C~G~G~~------~g~~~~~C~~C~G~G~~~~~~-G~~~~~~~C~~ 72 (104)
T 2ctt_A 3 SGSSGMELTFNQAAKGVNKEFTVNIMDTC---ERCNGKGNE------PGTKVQHCHYCGGSGMETINT-GPFVMRSTCRR 72 (104)
T ss_dssp CCCCCCCCCCSSCCSSSCTTCCSSCCEEC---SSSSSSSSC------TTCCCEECSSSSSSCEEEEEE-TTEEEEEECSS
T ss_pred ceEEEEEEEHHHHcCCCEEEEEeeeeeEC---CCCcCCccC------CCCCCccCCCCCCCEEEEEEe-CCEEEEEECCc
Confidence 45778899999999999999999999999 999999986 677889999999999998776 77888899999
Q ss_pred CCCCcee---cCCCCCCceeeC
Q 031276 132 CDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 132 C~G~G~v---~C~~C~G~G~v~ 150 (162)
|+|.|++ +|+.|+|.|++.
T Consensus 73 C~G~G~~i~~~C~~C~G~G~v~ 94 (104)
T 2ctt_A 73 CGGRGSIIISPCVVCRGAGQAK 94 (104)
T ss_dssp SSSSSEECSSCCSSSSSCSEEC
T ss_pred CCCcceECCCcCCCCCCeeEEE
Confidence 9999999 899999999763
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.61 E-value=3.5e-16 Score=129.82 Aligned_cols=90 Identities=24% Similarity=0.395 Sum_probs=77.7
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC-CCc--ccee
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG-GDE--REFS 127 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~-g~~--~~~~ 127 (162)
+|.++.++|+|+||++|.++++.|.+.+.| ..|+|+|++ .|+ ..+|+.|+|+|++...++ |.| +...
T Consensus 12 ~d~~~~l~vslee~~~G~~k~i~~~r~~~C---~~C~G~G~~------~g~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~ 81 (248)
T 1nlt_A 12 KDIKHEISASLEELYKGRTAKLALNKQILC---KECEGRGGK------KGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQT 81 (248)
T ss_dssp CCEEEEEEECTTHHHHCEEEEEEEEEEEEC---TTTTTCSBS------TTT-CCCCTTSSSSSCEEEEEESSSEEEEEEC
T ss_pred CCEEEEEEecHHHhcCCceEEEEeeEEEeC---CCCcCccCC------CCC-CccCCCCCCCcEEEEEEecCceEEEEEE
Confidence 466899999999999999999999999999 999999997 566 499999999999876552 433 3678
Q ss_pred eCCCCCCCcee-----cCCCCCCceeeC
Q 031276 128 KCINCDGVGSL-----TCTTCQGTGIQP 150 (162)
Q Consensus 128 ~C~~C~G~G~v-----~C~~C~G~G~v~ 150 (162)
+|+.|+|+|++ +|+.|+|.|++.
T Consensus 82 ~C~~C~G~G~~i~~~~~C~~C~G~g~~~ 109 (248)
T 1nlt_A 82 ECDVCHGTGDIIDPKDRCKSCNGKKVEN 109 (248)
T ss_dssp SCTTCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred cCCCCCCcCEEeccCCCCcccCCCceEe
Confidence 99999999965 799999999763
No 3
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.49 E-value=1.2e-14 Score=100.49 Aligned_cols=74 Identities=28% Similarity=0.479 Sum_probs=65.3
Q ss_pred ecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---cCCCC
Q 031276 67 GIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---TCTTC 143 (162)
Q Consensus 67 G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---~C~~C 143 (162)
|++++|.|.+.+.| +.|+|+|+. .+....+|+.|+|+|++...+ |.|+...+|+.|+|.|++ +|+.|
T Consensus 1 G~~~~i~~~~~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~-g~~~~~~~C~~C~G~G~~~~~~C~~C 70 (79)
T 1exk_A 1 GVTKEIRIPTLEEC---DVCHGSGAK------PGTQPQTCPTCHGSGQVQMRQ-GFFAVQQTCPHCQGRGTLIKDPCNKC 70 (79)
T ss_dssp CTTTSCCCCCEEEC---GGGTTTSBC------SSSCCEECTTTTTSSEEEEEE-TTEEEEEECTTTTTSSEECSSBCGGG
T ss_pred CcEEEEEcccceEC---CCCcccccC------CCccCCCCCCCcCeEEEEEEc-CCCEEeeECcCCCCccEECCCcCCCC
Confidence 67788999999999 999999986 566668999999999988765 777778899999999999 89999
Q ss_pred CCceeeC
Q 031276 144 QGTGIQP 150 (162)
Q Consensus 144 ~G~G~v~ 150 (162)
+|.|++.
T Consensus 71 ~G~G~~~ 77 (79)
T 1exk_A 71 HGHGRVE 77 (79)
T ss_dssp TTSSEEE
T ss_pred CCeEEEe
Confidence 9999874
No 4
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=98.10 E-value=3.1e-08 Score=92.82 Aligned_cols=85 Identities=12% Similarity=0.056 Sum_probs=64.6
Q ss_pred EEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCC---ccccCCCCCCcceEEEEe-----------
Q 031276 54 VVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPL---QWLRCSFCMGTGSVTVEL----------- 119 (162)
Q Consensus 54 ~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~---G~~~C~~C~GtG~v~~~~----------- 119 (162)
.+.++|+|+||++|+++++.+.+.+.| ..|+|+|++ +|. ...+|+.|||+.......
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C---~tCHGsGA~------~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH 238 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTC---NSCHSNLAF------HGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKH 238 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHH---HHHHSSCCT------TTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcC---CCCCCCCCc------CCccCcCCccCCCCCCCcccCCccccccceeeeee
Confidence 478899999999999999999999999 999999996 776 688999999994221110
Q ss_pred CC-CccceeeCCCCCCCce--------------ecCCCCCCce
Q 031276 120 GG-DEREFSKCINCDGVGS--------------LTCTTCQGTG 147 (162)
Q Consensus 120 ~g-~~~~~~~C~~C~G~G~--------------v~C~~C~G~G 147 (162)
.| +.+....|..|+..+. ..|..|+...
T Consensus 239 ~G~fP~~~~~C~~CH~~~~~la~~~~w~~~ps~~aC~sCH~~~ 281 (669)
T 3pmq_A 239 LTGFPQSISNCQTCHADNPDLADRQNWYRVPTMEACGACHTQI 281 (669)
T ss_dssp TSSCSSCTTCCTTTSCCCTTCCSCSCTTTCCCHHHHHHHCCSC
T ss_pred ccCCCCccCcchhhcCCccccccccccccCCchhhhhhccCCc
Confidence 01 1123457888888875 1588887543
No 5
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.08 E-value=1.3e-06 Score=59.74 Aligned_cols=42 Identities=33% Similarity=0.812 Sum_probs=34.4
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 150 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~ 150 (162)
...|+.|+|+|... .....+|+.|+|+|++ +|+.|+|.|++.
T Consensus 11 ~~~C~~C~G~G~~~------~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 63 (79)
T 1exk_A 11 LEECDVCHGSGAKP------GTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI 63 (79)
T ss_dssp EEECGGGTTTSBCS------SSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred ceECCCCcccccCC------CccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC
Confidence 47999999999753 1235689999999975 799999999874
No 6
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=2.1e-05 Score=56.74 Aligned_cols=42 Identities=33% Similarity=0.729 Sum_probs=33.8
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 150 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~ 150 (162)
...|+.|+|+|... + ....+|+.|+|+|++ +|+.|+|.|.+.
T Consensus 28 ~~~C~~C~G~G~~~----g--~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i 80 (104)
T 2ctt_A 28 MDTCERCNGKGNEP----G--TKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII 80 (104)
T ss_dssp CEECSSSSSSSSCT----T--CCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC
T ss_pred eeECCCCcCCccCC----C--CCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC
Confidence 47899999998642 2 235789999999965 799999999874
No 7
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.45 E-value=6.3e-05 Score=49.36 Aligned_cols=26 Identities=35% Similarity=0.825 Sum_probs=19.5
Q ss_pred ceeeCCCCCCCcee---cCCCCCCceeeC
Q 031276 125 EFSKCINCDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 125 ~~~~C~~C~G~G~v---~C~~C~G~G~v~ 150 (162)
...+|+.|+|+|++ +|+.|+|.|++.
T Consensus 8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 8 LETTCPNCNGSGREEPEPCPKCLGKGVIL 36 (53)
T ss_dssp HEEECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred eeccCcCCcccccCCCCcCCCCCCcEEEE
Confidence 35678888888876 788888888764
No 8
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.11 E-value=0.00027 Score=46.30 Aligned_cols=24 Identities=29% Similarity=0.935 Sum_probs=12.4
Q ss_pred eeCCCCCCCcee---cCCCCCCceeeC
Q 031276 127 SKCINCDGVGSL---TCTTCQGTGIQP 150 (162)
Q Consensus 127 ~~C~~C~G~G~v---~C~~C~G~G~v~ 150 (162)
.+|+.|+|+|++ +|+.|+|.|++.
T Consensus 10 ~~C~~C~GsG~~~~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 10 VACPKCERAGEIEGTPCPACSGKGVIL 36 (53)
T ss_dssp EECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred ccCCCCcceeccCCCCCccCCCCccEE
Confidence 344444444444 566666666543
No 9
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=97.06 E-value=0.00014 Score=59.95 Aligned_cols=40 Identities=38% Similarity=0.867 Sum_probs=29.9
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 150 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~ 150 (162)
..|+.|+|+|... +. ..+|+.|+|+|.+ +|+.|+|+|.+.
T Consensus 39 ~~C~~C~G~G~~~----g~---~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i 93 (248)
T 1nlt_A 39 ILCKECEGRGGKK----GA---VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII 93 (248)
T ss_dssp EECTTTTTCSBST----TT---CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC
T ss_pred EeCCCCcCccCCC----CC---CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEe
Confidence 5789999888642 22 3689999998852 699999998665
No 10
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.82 E-value=0.00069 Score=44.34 Aligned_cols=26 Identities=27% Similarity=0.747 Sum_probs=14.0
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL 138 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v 138 (162)
.+|+.|+|+|.+. ..+|+.|+|.|++
T Consensus 10 ~~C~~C~GsG~~~---------~~~C~~C~G~G~v 35 (53)
T 2bx9_A 10 VACPKCERAGEIE---------GTPCPACSGKGVI 35 (53)
T ss_dssp EECTTTTTSSEET---------TEECTTTTTSSEE
T ss_pred ccCCCCcceeccC---------CCCCccCCCCccE
Confidence 3555666655542 1356666666554
No 11
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.82 E-value=0.00069 Score=44.33 Aligned_cols=26 Identities=31% Similarity=0.710 Sum_probs=15.8
Q ss_pred ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee
Q 031276 104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL 138 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v 138 (162)
.+|+.|+|+|.+. ..+|+.|+|.|.+
T Consensus 10 ~~C~~C~GsG~~i---------~~~C~~C~G~G~v 35 (53)
T 3lcz_A 10 TTCPNCNGSGREE---------PEPCPKCLGKGVI 35 (53)
T ss_dssp EECTTTTTSCEET---------TEECTTTTTSSEE
T ss_pred ccCcCCcccccCC---------CCcCCCCCCcEEE
Confidence 4666666666653 1456666666665
No 12
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=94.09 E-value=0.011 Score=46.30 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=20.7
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEe
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYET 76 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~ 76 (162)
++.++.+.|+|+||++|.++++.+.+
T Consensus 3 ~d~~~~l~islee~~~G~~k~i~i~~ 28 (181)
T 3agx_A 3 PPVTHDLRVSLEEIYSGCTKKMKISH 28 (181)
T ss_dssp ---CEEEEECHHHHHHCEEEEEEEEE
T ss_pred CCEEEEEEEEHHHhcCCcEEEEEEec
Confidence 46688999999999999999997654
No 13
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=91.21 E-value=0.048 Score=42.55 Aligned_cols=30 Identities=17% Similarity=0.030 Sum_probs=27.3
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCC
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDN 80 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c 80 (162)
++.++.++|+|+||++|.++++.+.+.+.|
T Consensus 4 ~d~~~~l~islee~~~G~~k~i~~~~~~~c 33 (180)
T 2q2g_A 4 RSHEVPLLVTLEELYLGKRKKIKVTRKRFI 33 (180)
T ss_dssp CEEEEEEEECHHHHHHCEEEEEEEEEEEEE
T ss_pred CCEEEEEEeeHHHhcCCcEEEEEEeEEEec
Confidence 467899999999999999999999998876
No 14
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=86.69 E-value=0.18 Score=38.93 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=23.4
Q ss_pred ccEEEEEEeeeeeeeecceeEEEEee
Q 031276 52 NTVVAISVGLVSVAVGIGIPIFYETQ 77 (162)
Q Consensus 52 ~T~~~i~i~~~eaa~G~~~~i~~~~~ 77 (162)
|.++.++|+|+||++|.++++.+.+.
T Consensus 2 d~~~~l~islee~~~G~~k~i~~~~~ 27 (170)
T 1c3g_A 2 TVQVNLPVSLEDLFVGKKKSFKIGRK 27 (170)
T ss_dssp EEEEEEEECHHHHHHTCEEEEEEEEE
T ss_pred CEEEEEEeEHHHhhCCcEEEEEEEEe
Confidence 56889999999999999999999865
No 15
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=67.82 E-value=0.45 Score=44.67 Aligned_cols=43 Identities=21% Similarity=0.549 Sum_probs=31.1
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCc------------------------eecCCCCCCcee
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVG------------------------SLTCTTCQGTGI 148 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G------------------------~v~C~~C~G~G~ 148 (162)
...|..|||+|... ++......+|++|+|.. ...|.+|+..+.
T Consensus 191 ~~~C~tCHGsGA~~---Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~~ 257 (669)
T 3pmq_A 191 IDTCNSCHSNLAFH---GGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNP 257 (669)
T ss_dssp SHHHHHHHSSCCTT---TTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCCT
T ss_pred CCcCCCCCCCCCcC---CccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCcc
Confidence 47899999998632 22123567899999992 126999999875
No 16
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=63.23 E-value=2.2 Score=36.26 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=26.3
Q ss_pred cccEEEEEEeeeeeeeecceeEEEEeecCC
Q 031276 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDN 80 (162)
Q Consensus 51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c 80 (162)
++-.+.|.|+|+|++.|.++.+.+++.+.|
T Consensus 141 ~Dl~~~l~vsleea~~G~~k~i~i~~~v~~ 170 (329)
T 3lz8_A 141 HDLEIEVAVFLEETLAEQTRTISYNLPVYN 170 (329)
T ss_dssp CCEEEEECCCTTGGGSCEEEEEEEEEEECC
T ss_pred CCEEEEEecchhhhhhccceEEEEEEEeec
Confidence 466899999999999999999999987653
No 17
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=43.50 E-value=21 Score=22.84 Aligned_cols=19 Identities=32% Similarity=0.823 Sum_probs=10.1
Q ss_pred CceecCCCCCCceeeCcccc
Q 031276 135 VGSLTCTTCQGTGIQPRYLD 154 (162)
Q Consensus 135 ~G~v~C~~C~G~G~v~~~l~ 154 (162)
.|.+.|..| |.=.....||
T Consensus 28 ~ge~vC~~C-GlVl~e~~iD 46 (58)
T 1dl6_A 28 AGDMICPEC-GLVVGDRVID 46 (58)
T ss_dssp SCCEECTTT-CCEECCSCCC
T ss_pred CCeEEeCCC-CCEEeccccc
Confidence 355678888 3333344553
No 18
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=40.67 E-value=33 Score=25.74 Aligned_cols=39 Identities=23% Similarity=0.403 Sum_probs=22.3
Q ss_pred cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee--cCCC
Q 031276 103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL--TCTT 142 (162)
Q Consensus 103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v--~C~~ 142 (162)
...|..|...|-+...= -.......|..|+..|-+ -|+.
T Consensus 97 ~~~C~~Cg~~GH~a~~C-~~~~~~~~C~~Cg~~GH~~r~Cp~ 137 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKEC-KLPPQPKKCHFCQSINHMVASCPL 137 (148)
T ss_dssp SCCCTTTCCSSCCGGGC-CSCCCCCCCTTTCCSSCCGGGCTT
T ss_pred CCcccEeCCccchhhhC-CCCCCCCcccccCCcCCEeccCcC
Confidence 46799999888753210 000113457777777766 4554
No 19
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=37.12 E-value=27 Score=24.05 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=25.9
Q ss_pred cCcccccc--cCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee--cCCC
Q 031276 84 FPIFGAGQ--ARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL--TCTT 142 (162)
Q Consensus 84 ~~C~GsG~--~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v--~C~~ 142 (162)
..|...|= ..|.. ..+|..|...|.+.... ........|..|+..|-+ -|+.
T Consensus 9 ~~Cg~~GH~~~~Cp~------~~rcY~c~~~gh~~~~c-~~p~~~~~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 9 TLCKSKKHSKERCPS------IWRAYILVDDNEKAKPK-VLPFHTIYCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp SSSCCSSSCGGGCGG------GTCCCCBC--------------CCCBCSSSSCBSSCGGGCSS
T ss_pred CCCCCCCCccccCCC------cccccccccCCcccccc-cCCCCCCeecccCCCCcCcccCCc
Confidence 77877764 24443 23788898888764321 111134568888888877 5665
No 20
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=34.03 E-value=16 Score=22.30 Aligned_cols=9 Identities=33% Similarity=1.158 Sum_probs=5.6
Q ss_pred CceecCCCC
Q 031276 135 VGSLTCTTC 143 (162)
Q Consensus 135 ~G~v~C~~C 143 (162)
.|.+.|..|
T Consensus 22 ~gelvC~~C 30 (50)
T 1pft_A 22 RGEIVCAKC 30 (50)
T ss_dssp TTEEEESSS
T ss_pred CCeEECccc
Confidence 355567777
No 21
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=32.96 E-value=11 Score=27.32 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=18.4
Q ss_pred ccEEEEEEeeeeeeeecceeEE
Q 031276 52 NTVVAISVGLVSVAVGIGIPIF 73 (162)
Q Consensus 52 ~T~~~i~i~~~eaa~G~~~~i~ 73 (162)
|=.+.+.|+|.||+.|..+.|.
T Consensus 8 DL~~~~~Isl~eAllG~~i~v~ 29 (121)
T 1xao_A 8 DLVYEAEIDLLTAIAGGEFALE 29 (121)
T ss_dssp EEEEEEEEEHHHHHHCEEEEEE
T ss_pred eEEEEEEcCHHHHhCCCEEEEe
Confidence 4478999999999999877764
No 22
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=32.22 E-value=27 Score=33.37 Aligned_cols=32 Identities=38% Similarity=0.667 Sum_probs=19.3
Q ss_pred cCCCCCCcceEEEEeCCCccceeeCCCCCCCc
Q 031276 105 RCSFCMGTGSVTVELGGDEREFSKCINCDGVG 136 (162)
Q Consensus 105 ~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G 136 (162)
.|..|.|.|.+.....-.......|+.|+|..
T Consensus 640 ~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 640 RCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp BCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred ccccccCCCccchhhhcCCccceecccccCcc
Confidence 59999999988754321112345566666654
No 23
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=31.84 E-value=9.9 Score=27.10 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=18.7
Q ss_pred ccEEEEEEeeeeeeeecceeEE
Q 031276 52 NTVVAISVGLVSVAVGIGIPIF 73 (162)
Q Consensus 52 ~T~~~i~i~~~eaa~G~~~~i~ 73 (162)
|=.+.+.|+|.||+.|.++.|.
T Consensus 13 DL~~~~~Isl~eAl~G~~i~v~ 34 (109)
T 3i38_A 13 NLEIVLPLAPWEAALGAKVTVP 34 (109)
T ss_dssp EEEEEEEECHHHHHHCEEEEEC
T ss_pred EEEEEEEcCHHHHhCCCEEEEE
Confidence 4478999999999999887764
No 24
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=30.22 E-value=35 Score=33.38 Aligned_cols=31 Identities=29% Similarity=0.667 Sum_probs=19.4
Q ss_pred cCCCCCCcceEEEEeCCCccceeeCCCCCCC
Q 031276 105 RCSFCMGTGSVTVELGGDEREFSKCINCDGV 135 (162)
Q Consensus 105 ~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~ 135 (162)
+|..|.|.|.+.....-......+|..|+|.
T Consensus 755 rC~~C~g~G~i~~em~fl~~v~~~ce~c~G~ 785 (972)
T 2r6f_A 755 RCEACHGDGIIKIEMHFLPDVYVPCEVCHGK 785 (972)
T ss_dssp BCTTTTTCSEEEECCSSSCCEEEECTTTTTC
T ss_pred cccccccccceeeehhccccccccccccccc
Confidence 6999999998876542111234566666664
No 25
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=29.67 E-value=35 Score=24.26 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=6.1
Q ss_pred eCCCCCCCcee
Q 031276 128 KCINCDGVGSL 138 (162)
Q Consensus 128 ~C~~C~G~G~v 138 (162)
.|..|+..|-+
T Consensus 66 ~C~~Cg~~GH~ 76 (124)
T 2lli_A 66 QCTLCKSKKHS 76 (124)
T ss_dssp SSSSSCSSCCC
T ss_pred cCCCCCcCCcc
Confidence 45555555554
No 26
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.08 E-value=62 Score=20.16 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=6.5
Q ss_pred ccCCCCCCcceEE
Q 031276 104 LRCSFCMGTGSVT 116 (162)
Q Consensus 104 ~~C~~C~GtG~v~ 116 (162)
..|+.| |+|.+.
T Consensus 20 k~CP~C-G~~~fm 31 (50)
T 3j20_Y 20 KFCPRC-GPGVFM 31 (50)
T ss_dssp EECSSS-CSSCEE
T ss_pred ccCCCC-CCceEE
Confidence 567776 334444
No 27
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=25.02 E-value=35 Score=33.38 Aligned_cols=15 Identities=33% Similarity=0.800 Sum_probs=9.9
Q ss_pred cCCCCCCceeeCccc
Q 031276 139 TCTTCQGTGIQPRYL 153 (162)
Q Consensus 139 ~C~~C~G~G~v~~~l 153 (162)
.|++|+|.|.+..+=
T Consensus 302 aCp~C~G~G~~~~~d 316 (993)
T 2ygr_A 302 ACPDCSGLGIRKEVD 316 (993)
T ss_dssp BCTTTTTSCEEEEEC
T ss_pred CCCCCcCccceeecC
Confidence 477777777765443
No 28
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=24.98 E-value=3.4 Score=36.67 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=24.3
Q ss_pred cccCCCCCCcce-------EEEEeC-CCc-cceeeCCCCCCCcee---cCCCCCCc
Q 031276 103 WLRCSFCMGTGS-------VTVELG-GDE-REFSKCINCDGVGSL---TCTTCQGT 146 (162)
Q Consensus 103 ~~~C~~C~GtG~-------v~~~~~-g~~-~~~~~C~~C~G~G~v---~C~~C~G~ 146 (162)
...|..|||.-. +..... ... .+..+|..|+-.-.. .|..|+-.
T Consensus 36 ~~~C~~CH~~~~~~~~~~~~~~~np~~~~~~g~v~C~~Ch~~~~~~~~~c~~ch~~ 91 (572)
T 1d4d_A 36 NGQCVSCHGDLKELAAAAPKDKVSPHKSHLIGEIACTSCHKGHEKSVAYCDACHSF 91 (572)
T ss_dssp HHHHHHHHCCHHHHHHHCC---CBTTBSSCCSCCCGGGTSCSSSCCCCGGGGTCCC
T ss_pred cchhhhhCCCHHHhhhhccccccCCchhhcCCCCCcccccccccCCCCcccccccc
Confidence 357999998621 111110 111 134489999865433 78888763
No 29
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=24.59 E-value=22 Score=22.60 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=8.5
Q ss_pred cccCCCCCCcceEE
Q 031276 103 WLRCSFCMGTGSVT 116 (162)
Q Consensus 103 ~~~C~~C~GtG~v~ 116 (162)
...|..|...|-+.
T Consensus 4 ~~~C~~Cg~~GH~a 17 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQ 17 (61)
T ss_dssp TTBCSSSCCBTCCG
T ss_pred CCcccccCCCCeeh
Confidence 35677777666543
No 30
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=22.64 E-value=58 Score=31.86 Aligned_cols=31 Identities=29% Similarity=0.754 Sum_probs=19.6
Q ss_pred cCCCCCCcceEEEEeCCCccceeeCCCCCCC
Q 031276 105 RCSFCMGTGSVTVELGGDEREFSKCINCDGV 135 (162)
Q Consensus 105 ~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~ 135 (162)
+|..|.|.|.+.....-.......|..|.|.
T Consensus 773 rC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~ 803 (993)
T 2ygr_A 773 RCEACTGDGTIKIEMNFLPDVYVPCEVCQGA 803 (993)
T ss_dssp BCTTTTSSSEEEECCTTSCCEEEECTTTTTC
T ss_pred cccccccccceeehhhccccceeeehhcccc
Confidence 6999999998876542212234566666664
No 31
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=22.33 E-value=81 Score=25.51 Aligned_cols=10 Identities=40% Similarity=0.677 Sum_probs=5.2
Q ss_pred ccCCCCCCcc
Q 031276 104 LRCSFCMGTG 113 (162)
Q Consensus 104 ~~C~~C~GtG 113 (162)
..|+.|.+.|
T Consensus 157 ~~Cp~C~~~~ 166 (279)
T 1ltl_A 157 SLCSECGGRS 166 (279)
T ss_dssp SCCTTTCCCC
T ss_pred CcCCCCCCCC
Confidence 3455555555
No 32
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.69 E-value=85 Score=26.42 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=27.2
Q ss_pred ccCCCCCCcceEEEEeC-CC--ccceeeCCCCCCCcee---cCCCCCCceeeCcc
Q 031276 104 LRCSFCMGTGSVTVELG-GD--EREFSKCINCDGVGSL---TCTTCQGTGIQPRY 152 (162)
Q Consensus 104 ~~C~~C~GtG~v~~~~~-g~--~~~~~~C~~C~G~G~v---~C~~C~G~G~v~~~ 152 (162)
..|+.|.+.=....... |. ......|..|+-.=.. +|+.|.-++.+.+|
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~~l~y~ 237 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYL 237 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCSCCEEE
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCCCeeEE
Confidence 57888888765544331 21 1124567777765444 67777665544333
No 33
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=21.26 E-value=45 Score=32.57 Aligned_cols=23 Identities=30% Similarity=0.918 Sum_probs=19.4
Q ss_pred eCCCCCCCcee------------cCCCCCCceeeC
Q 031276 128 KCINCDGVGSL------------TCTTCQGTGIQP 150 (162)
Q Consensus 128 ~C~~C~G~G~v------------~C~~C~G~G~v~ 150 (162)
+|+.|.|.|.+ .|..|+|..+..
T Consensus 755 rC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~ 789 (972)
T 2r6f_A 755 RCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNR 789 (972)
T ss_dssp BCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCT
T ss_pred cccccccccceeeehhccccccccccccccccccc
Confidence 69999999997 699999976543
Done!