Query 031277
Match_columns 162
No_of_seqs 141 out of 1136
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:49:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02608 L-ascorbate peroxidas 100.0 7.4E-57 1.6E-61 374.3 16.9 162 1-162 1-162 (289)
2 PLN02879 L-ascorbate peroxidas 100.0 3.5E-53 7.5E-58 346.9 16.2 161 2-162 5-165 (251)
3 PLN02364 L-ascorbate peroxidas 100.0 1.1E-52 2.5E-57 344.0 16.0 161 2-162 4-165 (250)
4 cd00691 ascorbate_peroxidase A 100.0 1.5E-51 3.3E-56 338.1 15.9 159 4-162 2-164 (253)
5 PF00141 peroxidase: Peroxidas 100.0 2.6E-47 5.6E-52 309.3 7.1 140 17-162 1-149 (230)
6 PLN03030 cationic peroxidase; 100.0 6.5E-45 1.4E-49 306.7 10.3 142 13-162 37-189 (324)
7 cd00692 ligninase Ligninase an 100.0 4.3E-44 9.4E-49 302.5 14.6 149 13-162 16-176 (328)
8 cd00693 secretory_peroxidase H 100.0 5E-44 1.1E-48 299.6 10.6 142 13-162 14-169 (298)
9 cd00314 plant_peroxidase_like 100.0 1.9E-42 4.2E-47 283.6 13.7 147 16-162 2-161 (255)
10 cd00649 catalase_peroxidase_1 100.0 1.9E-42 4.2E-47 297.6 11.9 161 2-162 26-244 (409)
11 cd08201 plant_peroxidase_like_ 100.0 9.8E-43 2.1E-47 285.7 7.9 131 27-162 38-171 (264)
12 TIGR00198 cat_per_HPI catalase 100.0 1.2E-40 2.6E-45 302.1 11.3 161 2-162 36-253 (716)
13 PRK15061 catalase/hydroperoxid 100.0 9.1E-39 2E-43 288.9 11.5 161 2-162 38-257 (726)
14 cd08200 catalase_peroxidase_2 100.0 1.8E-36 3.8E-41 251.7 13.2 157 3-161 3-192 (297)
15 PRK15061 catalase/hydroperoxid 100.0 3E-32 6.6E-37 246.7 13.5 157 3-161 428-617 (726)
16 TIGR00198 cat_per_HPI catalase 100.0 4.1E-32 8.9E-37 246.6 14.4 157 3-162 422-607 (716)
17 COG0376 KatG Catalase (peroxid 100.0 5.9E-29 1.3E-33 218.1 10.1 161 2-162 51-269 (730)
18 COG0376 KatG Catalase (peroxid 99.6 4.4E-16 9.4E-21 137.6 8.5 154 3-159 439-619 (730)
19 PRK12346 transaldolase A; Prov 52.9 10 0.00022 32.5 2.1 58 105-162 168-241 (316)
20 cd00957 Transaldolase_TalAB Tr 50.2 18 0.0004 30.9 3.3 56 106-161 168-239 (313)
21 PTZ00411 transaldolase-like pr 46.0 24 0.00053 30.4 3.4 57 106-162 180-252 (333)
22 PF09533 DUF2380: Predicted li 39.1 29 0.00063 27.6 2.6 22 137-158 108-129 (188)
23 PRK05269 transaldolase B; Prov 39.1 24 0.00052 30.2 2.3 57 106-162 170-242 (318)
24 PRK12309 transaldolase/EF-hand 36.3 51 0.0011 29.1 3.9 56 106-161 174-245 (391)
25 cd00439 Transaldolase Transald 35.7 17 0.00037 30.0 0.8 57 106-162 159-231 (252)
26 PRK13859 type IV secretion sys 35.1 29 0.00062 22.0 1.6 31 94-124 9-42 (55)
27 TIGR00874 talAB transaldolase. 33.3 45 0.00098 28.6 3.1 57 105-161 167-239 (317)
28 TIGR01911 HesB_rel_seleno HesB 32.8 10 0.00022 26.4 -0.8 31 16-56 9-39 (92)
29 cd00956 Transaldolase_FSA Tran 29.1 43 0.00093 26.7 2.1 50 106-162 121-182 (211)
30 PF04225 OapA: Opacity-associa 28.9 49 0.0011 22.6 2.1 22 137-158 11-32 (85)
31 KOG0693 Myo-inositol-1-phospha 26.5 1.9E+02 0.0042 25.8 5.7 65 12-100 204-272 (512)
32 TIGR00875 fsa_talC_mipB fructo 26.1 48 0.001 26.6 1.9 50 106-162 121-182 (213)
33 PF00043 GST_C: Glutathione S- 25.7 1.5E+02 0.0032 19.2 4.1 35 72-106 33-72 (95)
34 PF14160 FAM110_C: Centrosome- 22.3 1.2E+02 0.0026 22.1 3.2 26 131-156 15-40 (111)
35 PF09388 SpoOE-like: Spo0E lik 22.2 1.2E+02 0.0025 18.0 2.7 20 138-157 12-31 (45)
36 PF04695 Pex14_N: Peroxisomal 21.6 93 0.002 23.0 2.6 24 135-158 22-45 (136)
No 1
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=7.4e-57 Score=374.34 Aligned_cols=162 Identities=89% Similarity=1.389 Sum_probs=159.1
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCcCChhhhcCCCCChhHHHHHHHH
Q 031277 1 MALPVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCE 80 (162)
Q Consensus 1 ~~~p~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~ 80 (162)
|+-|++|++|+++++.+|++|+++++++.++|.||||+||||+|||.++++|||||||++++|+++++|.||++++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid 80 (289)
T PLN02608 1 MAAPVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCE 80 (289)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHhhCCCCCHHHHHHhhhhhhhhccCCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCChhhhHHhhcCC
Q 031277 81 EVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGH 160 (162)
Q Consensus 81 ~ik~~~p~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaH 160 (162)
++|+++|+|||||||+||+++||+.+|||.|+|++||+|+.++.++++||.|+.+++++++.|+++|||++|||+|+|||
T Consensus 81 ~iK~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAH 160 (289)
T PLN02608 81 PVKAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGH 160 (289)
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred CC
Q 031277 161 TL 162 (162)
Q Consensus 161 ti 162 (162)
||
T Consensus 161 Ti 162 (289)
T PLN02608 161 TL 162 (289)
T ss_pred cc
Confidence 97
No 2
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=3.5e-53 Score=346.87 Aligned_cols=161 Identities=61% Similarity=1.038 Sum_probs=157.7
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCcCChhhhcCCCCChhHHHHHHHHH
Q 031277 2 ALPVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEE 81 (162)
Q Consensus 2 ~~p~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~ 81 (162)
+.|.++.+|.++++.++++|.+++.++.++|.+|||+||||+|||..++.|||||||+|.+|+++++|.||+.++++|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~i~~ 84 (251)
T PLN02879 5 SYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRLLDP 84 (251)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHhhCCCCCHHHHHHhhhhhhhhccCCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCChhhhHHhhcCCC
Q 031277 82 VKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHT 161 (162)
Q Consensus 82 ik~~~p~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaHt 161 (162)
||+++++|||||||+||+++||+.+|||.|+|++||+|+..+.++++||.|+.+++++++.|+++||+++|||||+||||
T Consensus 85 iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHT 164 (251)
T PLN02879 85 IKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHT 164 (251)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeecccc
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred C
Q 031277 162 L 162 (162)
Q Consensus 162 i 162 (162)
|
T Consensus 165 i 165 (251)
T PLN02879 165 L 165 (251)
T ss_pred c
Confidence 7
No 3
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.1e-52 Score=344.01 Aligned_cols=161 Identities=59% Similarity=1.037 Sum_probs=156.8
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCcCChhhhcCCCCChhHHHHHHHHH
Q 031277 2 ALPVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEE 81 (162)
Q Consensus 2 ~~p~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~ 81 (162)
++|.+..+|.++++.++++|++++.++++++.||||+||||+|||.....|||||||++++|+++++|.||.+++++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~i~~ 83 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRLLDP 83 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred HHhhCCCCCHHHHHHhhhhhhhhccCCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCChhhhHHhhcCC
Q 031277 82 VKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGH 160 (162)
Q Consensus 82 ik~~~p~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~-~Gl~~~e~VaL~GaH 160 (162)
||+++++|||||||+||+++||+.+|||.|+|++||+|++++.++++||.|+.+++++++.|++ +|||++|||+|+|||
T Consensus 84 ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaLsGaH 163 (250)
T PLN02364 84 IREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAH 163 (250)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHHHHhcCCCHHHheeeecce
Confidence 9999999999999999999999999999999999999999999988999999999999999996 699999999999999
Q ss_pred CC
Q 031277 161 TL 162 (162)
Q Consensus 161 ti 162 (162)
||
T Consensus 164 Ti 165 (250)
T PLN02364 164 TL 165 (250)
T ss_pred ee
Confidence 97
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.5e-51 Score=338.08 Aligned_cols=159 Identities=60% Similarity=1.027 Sum_probs=152.3
Q ss_pred CCCChhhHH-HHHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCcCChhhhcCCCCChhHHHHHHHHHH
Q 031277 4 PVVDTEYLK-EIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEV 82 (162)
Q Consensus 4 p~~~~~~~~-~~~~~~~~v~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~i 82 (162)
|+|...|.. ++++||++|++.+.++++++.+|||+||||++||++++.|||||++++++|+++++|.+|.+++++|++|
T Consensus 2 ~~~~~~~~~~~~~~V~~~v~~~~~~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~i 81 (253)
T cd00691 2 PVVSAAYAAKDLEAARNDIAKLIDDKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPI 81 (253)
T ss_pred CcccccccHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHH
Confidence 788888865 8999999999877799999999999999999999999999999999998999999999998999999999
Q ss_pred HhhCCCCCHHHHHHhhhhhhhhccCCCccccCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHCCCChhhhHHhhcC
Q 031277 83 KAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISP---KEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGG 159 (162)
Q Consensus 83 k~~~p~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~---~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~Ga 159 (162)
|+++|+|||||||++|+++||+.+|||.|+|++||+|+.++. ++++||.|+.+++++++.|+++||+++|||+|+||
T Consensus 82 K~~~~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGa 161 (253)
T cd00691 82 KKKYPDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGA 161 (253)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhccc
Confidence 999999999999999999999999999999999999999887 57789999999999999999999999999999999
Q ss_pred CCC
Q 031277 160 HTL 162 (162)
Q Consensus 160 Hti 162 (162)
|||
T Consensus 162 HTi 164 (253)
T cd00691 162 HTL 164 (253)
T ss_pred cee
Confidence 996
No 5
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=2.6e-47 Score=309.34 Aligned_cols=140 Identities=41% Similarity=0.624 Sum_probs=124.8
Q ss_pred HHHHHHHHH-hCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCcCC-hhhhcCCCCChhHHHHHHHHHHHhh----CC-CC
Q 031277 17 ARRDLRALI-AYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRN-EEEYSHGSNNGLKIALDFCEEVKAK----HP-KI 89 (162)
Q Consensus 17 ~~~~v~~~~-~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~-~~E~~~~~N~gl~~~~~~i~~ik~~----~p-~V 89 (162)
||++|++.+ .+++++|+||||+||||++| |||||||++ .+|+++++|.||.+++++|++||++ || +|
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcccccCCC
Confidence 688898754 67999999999999999944 999999975 7899999999998899999999974 77 79
Q ss_pred CHHHHHHhhhhhhhhccCCCccccCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHCCCChhhhHHhhcCCCC
Q 031277 90 TYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEG--RLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTL 162 (162)
Q Consensus 90 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~--~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaHti 162 (162)
||||||++|+++||+.+|||.|+|++||+|+..+.+.+ +||.|+.+++++++.|+++|||++|||||+|||||
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTi 149 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTI 149 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGS
T ss_pred CHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceeccccc
Confidence 99999999999999999999999999999999998754 59999999999999999999999999999999997
No 6
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=6.5e-45 Score=306.69 Aligned_cols=142 Identities=28% Similarity=0.395 Sum_probs=130.0
Q ss_pred HHHHHHHHHHH-HHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCcCCh---hhhcCCCCChhHHHHHHHHHHHh----
Q 031277 13 EIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNE---EEYSHGSNNGLKIALDFCEEVKA---- 84 (162)
Q Consensus 13 ~~~~~~~~v~~-~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~---~E~~~~~N~gl~~~~~~i~~ik~---- 84 (162)
..++|++.|++ +.++++.++++|||+||||| ++||||||++. .|+++++|.++ +++++|+.+|+
T Consensus 37 aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCf-------v~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf~~i~~iK~~~e~ 108 (324)
T PLN03030 37 AESIVRKTVQSHFQSNPAIAPGLLRMHFHDCF-------VRGCDASILIDGSNTEKTALPNLLL-RGYDVIDDAKTQLEA 108 (324)
T ss_pred HHHHHHHHHHHHHhhCcccchhhhhhhhhhhe-------ecCCceEEeeCCCcccccCCCCcCc-chHHHHHHHHHHHHh
Confidence 34588888876 56899999999999999999 89999999974 69999999988 68999999996
Q ss_pred hCC-CCCHHHHHHhhhhhhhhccCCCccccCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHCCCChhhhHHhhcCCC
Q 031277 85 KHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPK--EGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHT 161 (162)
Q Consensus 85 ~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~--~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaHt 161 (162)
+|| +|||||||++|+|+||.++|||.|+|++||+|+.+|.+ ..+||.|+.+++++++.|+++||+.+|||+|+||||
T Consensus 109 ~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHT 188 (324)
T PLN03030 109 ACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGLNTQDLVTLVGGHT 188 (324)
T ss_pred hCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCCCHHHheeeeeccc
Confidence 489 89999999999999999999999999999999988753 458999999999999999999999999999999999
Q ss_pred C
Q 031277 162 L 162 (162)
Q Consensus 162 i 162 (162)
|
T Consensus 189 i 189 (324)
T PLN03030 189 I 189 (324)
T ss_pred c
Confidence 7
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=4.3e-44 Score=302.47 Aligned_cols=149 Identities=30% Similarity=0.431 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHH-hCCCc---hHHHHHHHhhhcCCCC-----CCCCCCCCCCCcCCh--hhhcCCCCChhHHHHHHHHH
Q 031277 13 EIDKARRDLRALI-AYKNC---APIMLRLAWHDAGTYD-----VNTKTGGPNGSIRNE--EEYSHGSNNGLKIALDFCEE 81 (162)
Q Consensus 13 ~~~~~~~~v~~~~-~~~~~---a~~~lRl~FHDc~~~d-----~s~~~gG~dgsi~~~--~E~~~~~N~gl~~~~~~i~~ 81 (162)
.+..++++|++++ .+..| ++.+|||+||||++|| ...+.|||||||++. .|+++++|.||+.+++.+++
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~vvd~lk~ 95 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEIVEALRP 95 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHHHHHHHH
Confidence 3557889999865 45565 5669999999999999 467889999999863 58999999999988888888
Q ss_pred HHhhCCCCCHHHHHHhhhhhhhhcc-CCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCChhhhHHhhcCC
Q 031277 82 VKAKHPKITYADLYQLAGVVAVEVT-GGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGH 160 (162)
Q Consensus 82 ik~~~p~VS~ADiialAa~~av~~~-GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaH 160 (162)
++++++ |||||||+||+++||+.| |||.|+|++||+|++++.++++||.|+.+++++++.|+++||+++|||+|+|||
T Consensus 96 ~~e~~c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F~~~Gf~~~E~VaLsGAH 174 (328)
T cd00692 96 FHQKHN-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARFADAGFSPDELVALLAAH 174 (328)
T ss_pred HHHhcC-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHhhhcccc
Confidence 888876 999999999999999965 999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 031277 161 TL 162 (162)
Q Consensus 161 ti 162 (162)
||
T Consensus 175 Ti 176 (328)
T cd00692 175 SV 176 (328)
T ss_pred cc
Confidence 97
No 8
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=5e-44 Score=299.60 Aligned_cols=142 Identities=33% Similarity=0.471 Sum_probs=129.6
Q ss_pred HHHHHHHHHHH-HHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCcCC------hhhhcCCCCChhHHHHHHHHHHHh-
Q 031277 13 EIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRN------EEEYSHGSNNGLKIALDFCEEVKA- 84 (162)
Q Consensus 13 ~~~~~~~~v~~-~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~------~~E~~~~~N~gl~~~~~~i~~ik~- 84 (162)
.-++|+++|++ +..++++++++|||+||||+ ++||||||++ .+|+++++|.++ +++++|+++|+
T Consensus 14 ~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~-------v~GcDaSill~~~~~~~~E~~~~~N~~l-~g~~~i~~iK~~ 85 (298)
T cd00693 14 AESIVRSVVRAAVKADPRLAAALLRLHFHDCF-------VRGCDASVLLDSTANNTSEKDAPPNLSL-RGFDVIDDIKAA 85 (298)
T ss_pred hHHHHHHHHHHHHHhCCCcCchhhhhhhHhhh-------ccCcceeEEecCCCCCchhccCCCCCCc-chhHHHHHHHHH
Confidence 34588888886 56899999999999999999 7999999986 369999999998 69999999996
Q ss_pred ---hCC-CCCHHHHHHhhhhhhhhccCCCccccCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHCCCChhhhHHhhc
Q 031277 85 ---KHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPK--EGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSG 158 (162)
Q Consensus 85 ---~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~--~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~G 158 (162)
+|| .|||||||+||+++||+++|||.|+|++||+|+..+.+ .+.||.|+.+++++++.|+++||+++|||+|+|
T Consensus 86 ~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~d~VaL~G 165 (298)
T cd00693 86 LEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVTDLVALSG 165 (298)
T ss_pred HHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCHHHheeecc
Confidence 478 99999999999999999999999999999999987654 368999999999999999999999999999999
Q ss_pred CCCC
Q 031277 159 GHTL 162 (162)
Q Consensus 159 aHti 162 (162)
||||
T Consensus 166 aHTi 169 (298)
T cd00693 166 AHTI 169 (298)
T ss_pred ccee
Confidence 9997
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.9e-42 Score=283.65 Aligned_cols=147 Identities=48% Similarity=0.677 Sum_probs=136.2
Q ss_pred HHHHHHHHH-HhCCCchHHHHHHHhhhcCCCCCCC-CCCCCCCCcCChhhhcCCCCChhHHHHHHHHHHHhhCC---CCC
Q 031277 16 KARRDLRAL-IAYKNCAPIMLRLAWHDAGTYDVNT-KTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAKHP---KIT 90 (162)
Q Consensus 16 ~~~~~v~~~-~~~~~~a~~~lRl~FHDc~~~d~s~-~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~ik~~~p---~VS 90 (162)
.++..|++. -+++.+++.+|||+||||++|+.++ ..|||||||++.+|+++++|.++.+++++|++||.+++ +||
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~~~~~vS 81 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYDGGNPVS 81 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcCCCCccc
Confidence 467777764 4678999999999999999999888 78999999999999999999998899999999999985 899
Q ss_pred HHHHHHhhhhhhhhcc--CCCccccCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHHHHHCCCChhhhHHhh-cCCCC
Q 031277 91 YADLYQLAGVVAVEVT--GGPTVDFVPGRKDSK-----ISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALS-GGHTL 162 (162)
Q Consensus 91 ~ADiialAa~~av~~~--GGP~~~v~~GR~D~~-----~s~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~-GaHti 162 (162)
|||||++|+++||+.+ |||.|+|++||+|+. .+.|.+.+|.|..++.++++.|+++||+++|||||+ |||||
T Consensus 82 ~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaHti 161 (255)
T cd00314 82 RADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSAGAHTL 161 (255)
T ss_pred HHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhccCCeec
Confidence 9999999999999999 999999999999998 455778899999999999999999999999999999 99996
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.9e-42 Score=297.59 Aligned_cols=161 Identities=38% Similarity=0.583 Sum_probs=148.0
Q ss_pred CCCC-CChhhHHHH-----HHHHHHHHHHHhCC---------CchHHHHHHHhhhcCCCCCCCCCCCCC-CCcCChhhhc
Q 031277 2 ALPV-VDTEYLKEI-----DKARRDLRALIAYK---------NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYS 65 (162)
Q Consensus 2 ~~p~-~~~~~~~~~-----~~~~~~v~~~~~~~---------~~a~~~lRl~FHDc~~~d~s~~~gG~d-gsi~~~~E~~ 65 (162)
++|+ -|++|.+++ +++|++|++++.+. ++++.+|||+|||++|||.+++.||++ |+|+|++|.+
T Consensus 26 ~~p~~~~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~ 105 (409)
T cd00649 26 SNPMGEDFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNS 105 (409)
T ss_pred CCCCCCCCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccC
Confidence 5788 788998865 58999999988753 799999999999999999999999997 6999999999
Q ss_pred CCCCChhHHHHHHHHHHHhhCC-CCCHHHHHHhhhhhhhhccCCCccccCCCCCCCCCCC--------------------
Q 031277 66 HGSNNGLKIALDFCEEVKAKHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISP-------------------- 124 (162)
Q Consensus 66 ~~~N~gl~~~~~~i~~ik~~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~-------------------- 124 (162)
++.|.||+.++.+|++||++|| .||+||+|+||+.+||+.+|||.|+|.+||.|+..+.
T Consensus 106 ~~~N~gL~~a~~~L~pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~ 185 (409)
T cd00649 106 WPDNVNLDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGD 185 (409)
T ss_pred cHhhhhHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccc
Confidence 9999999999999999999998 8999999999999999999999999999999996532
Q ss_pred ------------------CCC--CCCCCCCCHHHHHHHHHHCCCChhhhHHh-hcCCCC
Q 031277 125 ------------------KEG--RLPDAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTL 162 (162)
Q Consensus 125 ------------------~~~--~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL-~GaHti 162 (162)
|++ .||.|..++.++++.|.+||||.+||||| +|||||
T Consensus 186 ~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTi 244 (409)
T cd00649 186 RDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTF 244 (409)
T ss_pred hhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcce
Confidence 334 69999999999999999999999999999 599997
No 11
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=9.8e-43 Score=285.72 Aligned_cols=131 Identities=34% Similarity=0.529 Sum_probs=117.6
Q ss_pred CCCchHHHHHHHhhhcCCCCCCCCCCCCCCCcCChhhhcCCCCChhH--HHHHHHHHHHhhCCCCCHHHHHHhhhhhhhh
Q 031277 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLK--IALDFCEEVKAKHPKITYADLYQLAGVVAVE 104 (162)
Q Consensus 27 ~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~--~~~~~i~~ik~~~p~VS~ADiialAa~~av~ 104 (162)
+++.+++||||+||||+|||...++|||||||++ |..++||.|+. ..+..++.++ .+.||||||||||+++||+
T Consensus 38 ~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIll--e~~~~En~G~~~n~~l~~~~~i~--~~~VScADiialAa~~AV~ 113 (264)
T cd08201 38 GRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQY--ELDRPENIGSGFNTTLNFFVNFY--SPRSSMADLIAMGVVTSVA 113 (264)
T ss_pred CccHHHHHHHHHHHhhcCcccCCCCCCCCcceee--cCCChhhccCchhhccccceeec--cCccCHHHHHHHHHHHHHH
Confidence 3467999999999999999999999999999998 46788998875 3345555553 2589999999999999999
Q ss_pred ccCCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCChhhhHHhhc-CCCC
Q 031277 105 VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSG-GHTL 162 (162)
Q Consensus 105 ~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~G-aHti 162 (162)
.||||.|+|++||+|+..+.+.+ ||.|+.+++++++.|+++||+++|||+|+| ||||
T Consensus 114 ~~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTi 171 (264)
T cd08201 114 SCGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTL 171 (264)
T ss_pred HcCCCeecccccCCCcccccccc-CCCCccCHHHHHHHHHHcCCChHHHheeecCCeee
Confidence 99999999999999999998887 999999999999999999999999999995 9997
No 12
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.2e-40 Score=302.09 Aligned_cols=161 Identities=36% Similarity=0.547 Sum_probs=147.7
Q ss_pred CCCC-CChhhHHHHH-----HHHHHHHHHHhCC---------CchHHHHHHHhhhcCCCCCCCCCCCCC-CCcCChhhhc
Q 031277 2 ALPV-VDTEYLKEID-----KARRDLRALIAYK---------NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYS 65 (162)
Q Consensus 2 ~~p~-~~~~~~~~~~-----~~~~~v~~~~~~~---------~~a~~~lRl~FHDc~~~d~s~~~gG~d-gsi~~~~E~~ 65 (162)
.+|+ -|++|.++++ .+|++|++++.+. .++|.+|||+||+++|||.+++.||++ |+|+|++|.+
T Consensus 36 ~~p~~~~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~s 115 (716)
T TIGR00198 36 TNPMGEDFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNS 115 (716)
T ss_pred CCCCCCCccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccC
Confidence 5888 7899998776 5899999988764 699999999999999999999999996 6999999999
Q ss_pred CCCCChhHHHHHHHHHHHhhCC-CCCHHHHHHhhhhhhhhccCCCccccCCCCCCCCCCC--------------------
Q 031277 66 HGSNNGLKIALDFCEEVKAKHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISP-------------------- 124 (162)
Q Consensus 66 ~~~N~gl~~~~~~i~~ik~~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~-------------------- 124 (162)
|+.|.+|++++.+|++||++|| .|||||||+|||++||+.+|||.|+|.+||+|+..+.
T Consensus 116 w~~N~~Ldka~~lL~pIk~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~ 195 (716)
T TIGR00198 116 WPDNVNLDKARRLLWPIKKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRE 195 (716)
T ss_pred chhhhhHHHHHHHHHHHHHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccc
Confidence 9999999999999999999999 8999999999999999999999999999999984321
Q ss_pred -----------------CCC--CCCCCCCCHHHHHHHHHHCCCChhhhHHhh-cCCCC
Q 031277 125 -----------------KEG--RLPDAKRGAPHLRDIFYRMGLSDKDIVALS-GGHTL 162 (162)
Q Consensus 125 -----------------~~~--~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~-GaHti 162 (162)
+++ .+|.|..++.++++.|.++|||.+|||||+ |||||
T Consensus 196 ~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTi 253 (716)
T TIGR00198 196 SLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTV 253 (716)
T ss_pred cccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceec
Confidence 222 699999999999999999999999999996 99997
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=9.1e-39 Score=288.91 Aligned_cols=161 Identities=38% Similarity=0.591 Sum_probs=146.6
Q ss_pred CCCC-CChhhHHHH-----HHHHHHHHHHHhCC---------CchHHHHHHHhhhcCCCCCCCCCCCCC-CCcCChhhhc
Q 031277 2 ALPV-VDTEYLKEI-----DKARRDLRALIAYK---------NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYS 65 (162)
Q Consensus 2 ~~p~-~~~~~~~~~-----~~~~~~v~~~~~~~---------~~a~~~lRl~FHDc~~~d~s~~~gG~d-gsi~~~~E~~ 65 (162)
++|+ -|++|.+++ +.+|++|++++.++ .+++.+|||+||+++|||.+++.||++ |+|+|++|.+
T Consensus 38 ~~p~~~~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~ 117 (726)
T PRK15061 38 SNPMGEDFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNS 117 (726)
T ss_pred CCCCCCCCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCccccc
Confidence 5898 789998865 48999999988764 689999999999999999999999997 6999999999
Q ss_pred CCCCChhHHHHHHHHHHHhhCC-CCCHHHHHHhhhhhhhhccCCCccccCCCCCCCCCCCC-------------------
Q 031277 66 HGSNNGLKIALDFCEEVKAKHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPK------------------- 125 (162)
Q Consensus 66 ~~~N~gl~~~~~~i~~ik~~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~------------------- 125 (162)
++.|.+|++++.+|++||++|+ .||+||+|+||+.+|||.+|||.|+|.+||.|...+..
T Consensus 118 w~~N~gL~ka~~~L~pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~ 197 (726)
T PRK15061 118 WPDNVNLDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSG 197 (726)
T ss_pred chhhhhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCcccccccccccccc
Confidence 9999999999999999999998 89999999999999999999999999999999854321
Q ss_pred --------------------CC--CCCCCCCCHHHHHHHHHHCCCChhhhHHhh-cCCCC
Q 031277 126 --------------------EG--RLPDAKRGAPHLRDIFYRMGLSDKDIVALS-GGHTL 162 (162)
Q Consensus 126 --------------------~~--~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~-GaHti 162 (162)
++ -+|.|..++.++++.|.+||||.+|||||+ |||||
T Consensus 198 ~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~ 257 (726)
T PRK15061 198 ERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTF 257 (726)
T ss_pred ccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCcee
Confidence 11 279999999999999999999999999995 99997
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=1.8e-36 Score=251.70 Aligned_cols=157 Identities=31% Similarity=0.434 Sum_probs=133.3
Q ss_pred CCCCChhhHHHHHHHHHHHHH-HHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCC-cCChhhhcCCCCCh--hHHHHHH
Q 031277 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNNG--LKIALDF 78 (162)
Q Consensus 3 ~p~~~~~~~~~~~~~~~~v~~-~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N~g--l~~~~~~ 78 (162)
.|.+|++++.+-++. .|++ ++....+++.+|||+||+++|||.+++.||+||+ |+|++|++|+.|++ |.+++.+
T Consensus 3 ~p~~~~~~i~~~di~--~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~ 80 (297)
T cd08200 3 IPAVDYELIDDADIA--ALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLAV 80 (297)
T ss_pred CCCCCccccCHHHHH--HHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHHH
Confidence 477888887633322 4443 4455678999999999999999999999999995 99999999999999 9999999
Q ss_pred HHHHHhhCC-------CCCHHHHHHhhhhhhhhccCC-----CccccCCCCCCCCCCCC--C---CCCCCCC--------
Q 031277 79 CEEVKAKHP-------KITYADLYQLAGVVAVEVTGG-----PTVDFVPGRKDSKISPK--E---GRLPDAK-------- 133 (162)
Q Consensus 79 i~~ik~~~p-------~VS~ADiialAa~~av~~~GG-----P~~~v~~GR~D~~~s~~--~---~~lP~p~-------- 133 (162)
|++||+++| .||+||+|+||+.+|||.+|| |.|+|.+||.|+..+.. + .++|.+.
T Consensus 81 Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~ 160 (297)
T cd08200 81 LEGIQKEFNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKK 160 (297)
T ss_pred HHHHHHHhcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCccccccccc
Confidence 999999997 799999999999999999999 99999999999987542 1 2345332
Q ss_pred ----CCHHHHHHHHHHCCCChhhhHHhhcCCC
Q 031277 134 ----RGAPHLRDIFYRMGLSDKDIVALSGGHT 161 (162)
Q Consensus 134 ----~~~~~l~~~F~~~Gl~~~e~VaL~GaHt 161 (162)
...+.|++.|.++|||++|||||+|||+
T Consensus 161 ~~~~~~~~~Lrd~f~rlglsd~EmvaL~Gg~r 192 (297)
T cd08200 161 GYRVPPEEMLVDKAQLLTLTAPEMTVLVGGLR 192 (297)
T ss_pred CCCCCHHHHHHHHHHhCCCChHHHhheecchh
Confidence 2346799999999999999999999984
No 15
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.98 E-value=3e-32 Score=246.67 Aligned_cols=157 Identities=32% Similarity=0.459 Sum_probs=134.2
Q ss_pred CCCCChhhHHHHHHHHHHHHH-HHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCC-cCChhhhcCCCCC--hhHHHHHH
Q 031277 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNN--GLKIALDF 78 (162)
Q Consensus 3 ~p~~~~~~~~~~~~~~~~v~~-~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N~--gl~~~~~~ 78 (162)
.|.+|++++.+-++. .|++ ++...-..+.+||++||+++|||.+++.||+||+ |+|++|++++.|+ +|.+++.+
T Consensus 428 ~p~~~~~~~~~~di~--~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~ 505 (726)
T PRK15061 428 VPAVDHELIDDADIA--ALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAV 505 (726)
T ss_pred CCCCCcccCCHHHHH--HHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHH
Confidence 367888887755444 5554 5556667999999999999999999999999995 9999999999999 99999999
Q ss_pred HHHHHhhC-------CCCCHHHHHHhhhhhhhhcc---CC--CccccCCCCCCCCCCCCC-----CCCCCCC--------
Q 031277 79 CEEVKAKH-------PKITYADLYQLAGVVAVEVT---GG--PTVDFVPGRKDSKISPKE-----GRLPDAK-------- 133 (162)
Q Consensus 79 i~~ik~~~-------p~VS~ADiialAa~~av~~~---GG--P~~~v~~GR~D~~~s~~~-----~~lP~p~-------- 133 (162)
|++||++| |.||+||+|+||+.+|||.+ || |.+||.+||.|++..... .++|...
T Consensus 506 LE~Ik~~f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~ 585 (726)
T PRK15061 506 LEGIQAEFNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKK 585 (726)
T ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccc
Confidence 99999998 68999999999999999999 57 999999999999876432 2456532
Q ss_pred ----CCHHHHHHHHHHCCCChhhhHHhhcCCC
Q 031277 134 ----RGAPHLRDIFYRMGLSDKDIVALSGGHT 161 (162)
Q Consensus 134 ----~~~~~l~~~F~~~Gl~~~e~VaL~GaHt 161 (162)
.....|++.|.++|||++|||||+|||+
T Consensus 586 ~~~~~~e~~L~d~a~~lglt~~EmvaL~Gg~r 617 (726)
T PRK15061 586 GYSVSPEELLVDKAQLLTLTAPEMTVLVGGLR 617 (726)
T ss_pred cCCCCHHHHHHHHHHhCCCChHHHhheecchh
Confidence 1337899999999999999999999984
No 16
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.98 E-value=4.1e-32 Score=246.64 Aligned_cols=157 Identities=30% Similarity=0.412 Sum_probs=131.2
Q ss_pred CCCCChhhHHHHHHHHHHHH-HHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCC-cCChhhhcCCCC--ChhHHHHHH
Q 031277 3 LPVVDTEYLKEIDKARRDLR-ALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSN--NGLKIALDF 78 (162)
Q Consensus 3 ~p~~~~~~~~~~~~~~~~v~-~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N--~gl~~~~~~ 78 (162)
.|.+|++++ ++-++.|+ +++.+.-+++.+||++||+++|||.+++.||+||+ |+|++|++++.| .+|.+++.+
T Consensus 422 ~p~~~~~~v---~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~ 498 (716)
T TIGR00198 422 LPPVDYTLS---EGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAV 498 (716)
T ss_pred CCCCCchhH---HHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHH
Confidence 366887775 32233454 35666778999999999999999999999999995 999999999999 899999999
Q ss_pred HHHHHhhCC--CCCHHHHHHhhhhhhhhcc---CCC--ccccCCCCCCCCCCC--CCCCCCC---------------CCC
Q 031277 79 CEEVKAKHP--KITYADLYQLAGVVAVEVT---GGP--TVDFVPGRKDSKISP--KEGRLPD---------------AKR 134 (162)
Q Consensus 79 i~~ik~~~p--~VS~ADiialAa~~av~~~---GGP--~~~v~~GR~D~~~s~--~~~~lP~---------------p~~ 134 (162)
|++||+++| .||+||+|+||+.+|||.+ ||| .+||.+||.|++... +++..|. ...
T Consensus 499 Le~Ik~~f~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~ 578 (716)
T TIGR00198 499 LEKIQAEFAKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVT 578 (716)
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCC
Confidence 999999999 8999999999999999999 897 689999999998764 2322221 122
Q ss_pred CHHHHHHHHHHCCCChhhhHHhhcCC-CC
Q 031277 135 GAPHLRDIFYRMGLSDKDIVALSGGH-TL 162 (162)
Q Consensus 135 ~~~~l~~~F~~~Gl~~~e~VaL~GaH-ti 162 (162)
....+++.|.++|||++|||||+||| ++
T Consensus 579 ~~~~l~d~a~~lglt~~EmvaL~Gg~r~l 607 (716)
T TIGR00198 579 PEELLLDKAQLLTLTAPEMTVLIGGMRVL 607 (716)
T ss_pred HHHHHHHHHHhCCCChHHHHheecchhhc
Confidence 34568999999999999999999995 64
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.9e-29 Score=218.09 Aligned_cols=161 Identities=38% Similarity=0.582 Sum_probs=144.5
Q ss_pred CCCC-CChhhHHHHH-----HHHHHHHHHHhCC---------CchHHHHHHHhhhcCCCCCCCCCCCCC-CCcCChhhhc
Q 031277 2 ALPV-VDTEYLKEID-----KARRDLRALIAYK---------NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYS 65 (162)
Q Consensus 2 ~~p~-~~~~~~~~~~-----~~~~~v~~~~~~~---------~~a~~~lRl~FHDc~~~d~s~~~gG~d-gsi~~~~E~~ 65 (162)
.+|+ .|++|.++++ ++++++++++.+. ..++.+|||+||.++||+..++.||.. |..+|.++.+
T Consensus 51 snP~g~~fdYaeefk~lD~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnS 130 (730)
T COG0376 51 SNPMGEDFDYAEEFKSLDLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNS 130 (730)
T ss_pred cCCCccchHHHHHhhhccHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccC
Confidence 4788 8999998765 8889999888653 478999999999999999999999987 5999999999
Q ss_pred CCCCChhHHHHHHHHHHHhhCC-CCCHHHHHHhhhhhhhhccCCCccccCCCCCCCCCCCC-------------------
Q 031277 66 HGSNNGLKIALDFCEEVKAKHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPK------------------- 125 (162)
Q Consensus 66 ~~~N~gl~~~~~~i~~ik~~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~------------------- 125 (162)
||.|.+|++++.+|.+||+||+ .||+||+|.|++.+|++.+|++.+.|..||.|--.+..
T Consensus 131 WPDN~nLDKarRLLWPIKkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~ 210 (730)
T COG0376 131 WPDNANLDKARRLLWPIKKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGD 210 (730)
T ss_pred CCcccchHHHHHHhhhHhHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCcccccccccccccc
Confidence 9999999999999999999999 99999999999999999999999999999999643321
Q ss_pred -------------------C--CCCCCCCCCHHHHHHHHHHCCCChhhhHHhh-cCCCC
Q 031277 126 -------------------E--GRLPDAKRGAPHLRDIFYRMGLSDKDIVALS-GGHTL 162 (162)
Q Consensus 126 -------------------~--~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~-GaHti 162 (162)
+ +..|.|-.+..+++..|+||+++.+|+|||+ ||||+
T Consensus 211 ~~Le~PlaavqMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtf 269 (730)
T COG0376 211 RDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTF 269 (730)
T ss_pred ccccCchhhheeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhccccc
Confidence 2 3478888899999999999999999999999 59996
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.64 E-value=4.4e-16 Score=137.56 Aligned_cols=154 Identities=31% Similarity=0.438 Sum_probs=122.6
Q ss_pred CCCCChhhHHHHHHHHHHHH-HHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCC-CcCChhhhcCCCCC--hhHHHHHH
Q 031277 3 LPVVDTEYLKEIDKARRDLR-ALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNG-SIRNEEEYSHGSNN--GLKIALDF 78 (162)
Q Consensus 3 ~p~~~~~~~~~~~~~~~~v~-~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dg-si~~~~E~~~~~N~--gl~~~~~~ 78 (162)
.|.||++... .-...++ +++.+.-....++-.+|-.+.||+.|++.||.|| .|++.|.++|+.|. .|.+++.+
T Consensus 439 iP~vd~~l~d---~di~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~ 515 (730)
T COG0376 439 LPAVDYELVD---ADIAALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAV 515 (730)
T ss_pred CCccccccch---HHHHHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHH
Confidence 4778887755 2333565 4667777789999999999999999999999998 99999999999995 67789999
Q ss_pred HHHHHhhCC-CCCHHHHHHhhhhhhhhcc---CCC--ccccCCCCCCCCCCCCC----CCC-C------------CCCCC
Q 031277 79 CEEVKAKHP-KITYADLYQLAGVVAVEVT---GGP--TVDFVPGRKDSKISPKE----GRL-P------------DAKRG 135 (162)
Q Consensus 79 i~~ik~~~p-~VS~ADiialAa~~av~~~---GGP--~~~v~~GR~D~~~s~~~----~~l-P------------~p~~~ 135 (162)
++.|.+.+. .||.||+|+|++..+|+.+ .|- .+||.+||.|+++.... ..| | .....
T Consensus 516 le~iq~~fnkkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~p 595 (730)
T COG0376 516 LEKIQKEFNKKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTP 595 (730)
T ss_pred HHHHHHHhcCccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCH
Confidence 999999886 7999999999999999986 443 57899999999765421 001 1 11122
Q ss_pred HHHHHHHHHHCCCChhhhHHhhcC
Q 031277 136 APHLRDIFYRMGLSDKDIVALSGG 159 (162)
Q Consensus 136 ~~~l~~~F~~~Gl~~~e~VaL~Ga 159 (162)
-.-|+++-+-.+||..||++|+||
T Consensus 596 e~~LvDkAqlL~LtapemtVLiGG 619 (730)
T COG0376 596 EELLVDKAQLLTLTAPEMTVLIGG 619 (730)
T ss_pred HHHHHHHHHHhccCCccceEEEcc
Confidence 334778888899999999999987
No 19
>PRK12346 transaldolase A; Provisional
Probab=52.91 E-value=10 Score=32.54 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=38.1
Q ss_pred ccCCCccccCCCCCCCCCCCC--CCCC-CCC---CCCHHHHHHHHHHCCCC----------hhhhHHhhcCCCC
Q 031277 105 VTGGPTVDFVPGRKDSKISPK--EGRL-PDA---KRGAPHLRDIFYRMGLS----------DKDIVALSGGHTL 162 (162)
Q Consensus 105 ~~GGP~~~v~~GR~D~~~s~~--~~~l-P~p---~~~~~~l~~~F~~~Gl~----------~~e~VaL~GaHti 162 (162)
.+|-..+..+.||.|...... ...+ +.. -..+.++.++|++.|+. ..|+.+|.|+|.+
T Consensus 168 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn~~qi~alaG~d~l 241 (316)
T PRK12346 168 EAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRRTEQILALAGCDRL 241 (316)
T ss_pred HcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHHHhCCCEE
Confidence 358889999999988632111 1111 111 23567788889888853 6788899999853
No 20
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=50.15 E-value=18 Score=30.88 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=36.6
Q ss_pred cCCCccccCCCCCCCCCCCCCC--CCCC----CCCCHHHHHHHHHHCCCC----------hhhhHHhhcCCC
Q 031277 106 TGGPTVDFVPGRKDSKISPKEG--RLPD----AKRGAPHLRDIFYRMGLS----------DKDIVALSGGHT 161 (162)
Q Consensus 106 ~GGP~~~v~~GR~D~~~s~~~~--~lP~----p~~~~~~l~~~F~~~Gl~----------~~e~VaL~GaHt 161 (162)
+|-..+..+.||.|...-...+ ..+. .-..+.++.++|++.|+. ..|+..|.|+|.
T Consensus 168 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vmaASfRn~~~v~~laG~d~ 239 (313)
T cd00957 168 AGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKVMGASFRNIGQILALAGCDY 239 (313)
T ss_pred cCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHHHhCCCe
Confidence 4778899999998753211111 0111 123567888889888864 577888889885
No 21
>PTZ00411 transaldolase-like protein; Provisional
Probab=45.98 E-value=24 Score=30.42 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=37.5
Q ss_pred cCCCccccCCCCCCCCCCCCC---CCCCCC---CCCHHHHHHHHHHCCCC----------hhhhHHhhcCCCC
Q 031277 106 TGGPTVDFVPGRKDSKISPKE---GRLPDA---KRGAPHLRDIFYRMGLS----------DKDIVALSGGHTL 162 (162)
Q Consensus 106 ~GGP~~~v~~GR~D~~~s~~~---~~lP~p---~~~~~~l~~~F~~~Gl~----------~~e~VaL~GaHti 162 (162)
+|...+..+.||.+.....+. ...+.. -..+.++.++|++.|+. .+|+..|.|+|.+
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 477889999999855322211 111211 23567788889888864 6788889999853
No 22
>PF09533 DUF2380: Predicted lipoprotein of unknown function (DUF2380); InterPro: IPR011755 This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N terminus; the others are predicted lipoproteins. The function is unknown.
Probab=39.09 E-value=29 Score=27.56 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=18.8
Q ss_pred HHHHHHHHHCCCChhhhHHhhc
Q 031277 137 PHLRDIFYRMGLSDKDIVALSG 158 (162)
Q Consensus 137 ~~l~~~F~~~Gl~~~e~VaL~G 158 (162)
.++..+|+++|+++.+-+.++.
T Consensus 108 ~~la~wF~~~Gi~IHd~ti~Ip 129 (188)
T PF09533_consen 108 EELAEWFERRGIDIHDYTIPIP 129 (188)
T ss_pred HHHHHHHHHcCCChhheeEecC
Confidence 4789999999999998877764
No 23
>PRK05269 transaldolase B; Provisional
Probab=39.07 E-value=24 Score=30.20 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=37.2
Q ss_pred cCCCccccCCCCCCCCCCCC---CCCCC---CCCCCHHHHHHHHHHCCCC----------hhhhHHhhcCCCC
Q 031277 106 TGGPTVDFVPGRKDSKISPK---EGRLP---DAKRGAPHLRDIFYRMGLS----------DKDIVALSGGHTL 162 (162)
Q Consensus 106 ~GGP~~~v~~GR~D~~~s~~---~~~lP---~p~~~~~~l~~~F~~~Gl~----------~~e~VaL~GaHti 162 (162)
+|...+..+.||.|...-.. ...-+ +.-..+.++.++|++.|+. ..++..|.|+|++
T Consensus 170 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~ASfrn~~~v~~laG~d~v 242 (318)
T PRK05269 170 AGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGASFRNTGQILELAGCDRL 242 (318)
T ss_pred cCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEeeccCCHHHHHHHhCCCeE
Confidence 47788999999987531111 00011 1234577888899988864 5677888898853
No 24
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=36.29 E-value=51 Score=29.07 Aligned_cols=56 Identities=18% Similarity=0.324 Sum_probs=37.2
Q ss_pred cCCCccccCCCCCCCCCCCCCC--CCCCCC----CCHHHHHHHHHHCCCC----------hhhhHHhhcCCC
Q 031277 106 TGGPTVDFVPGRKDSKISPKEG--RLPDAK----RGAPHLRDIFYRMGLS----------DKDIVALSGGHT 161 (162)
Q Consensus 106 ~GGP~~~v~~GR~D~~~s~~~~--~lP~p~----~~~~~l~~~F~~~Gl~----------~~e~VaL~GaHt 161 (162)
+|-..+..+.||.|.-.-...+ .+|... ..+.++.++|++.|+. ..++..|.|+|.
T Consensus 174 AGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfRn~~~v~~laG~d~ 245 (391)
T PRK12309 174 AGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRNIGEIIELAGCDL 245 (391)
T ss_pred cCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcEEEecccCCHHHHHHHHCCCe
Confidence 5888999999998762211111 133222 2567888889888753 578888889885
No 25
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=35.67 E-value=17 Score=29.97 Aligned_cols=57 Identities=18% Similarity=0.122 Sum_probs=35.2
Q ss_pred cCCCccccCCCCCCCCCCCC-CCCCCCC--CCC---HHHHHHHHHHCCCC----------hhhhHHhhcCCCC
Q 031277 106 TGGPTVDFVPGRKDSKISPK-EGRLPDA--KRG---APHLRDIFYRMGLS----------DKDIVALSGGHTL 162 (162)
Q Consensus 106 ~GGP~~~v~~GR~D~~~s~~-~~~lP~p--~~~---~~~l~~~F~~~Gl~----------~~e~VaL~GaHti 162 (162)
+|...+.++.||.|...-.. ...-+.+ ... +.++.+.|++.|.+ .+++..|.|+|++
T Consensus 159 Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~tkiL~AS~r~~~~v~~l~G~d~v 231 (252)
T cd00439 159 AGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQRVLWASFSDTLYVAPLIGCDTV 231 (252)
T ss_pred cCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCCeEEEEeeCCHHHHHHhhCCCee
Confidence 47778899999998754321 1111112 133 34667777776653 5677788888864
No 26
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=35.06 E-value=29 Score=22.00 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=23.0
Q ss_pred HHHhhhh---hhhhccCCCccccCCCCCCCCCCC
Q 031277 94 LYQLAGV---VAVEVTGGPTVDFVPGRKDSKISP 124 (162)
Q Consensus 94 iialAa~---~av~~~GGP~~~v~~GR~D~~~s~ 124 (162)
+++||+. +-...|.||.+++-.||--.+.|+
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptpsD 42 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTPSD 42 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCChhh
Confidence 4566655 456678999999999998766554
No 27
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=33.27 E-value=45 Score=28.59 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=37.2
Q ss_pred ccCCCccccCCCCCCCCCCCCC---CCCC---CCCCCHHHHHHHHHHCCCC----------hhhhHHhhcCCC
Q 031277 105 VTGGPTVDFVPGRKDSKISPKE---GRLP---DAKRGAPHLRDIFYRMGLS----------DKDIVALSGGHT 161 (162)
Q Consensus 105 ~~GGP~~~v~~GR~D~~~s~~~---~~lP---~p~~~~~~l~~~F~~~Gl~----------~~e~VaL~GaHt 161 (162)
.+|...+..+.||.+.-.-... ...+ ++-..+.++.++|++.|+. .+|+.+|.|+|.
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qv~~laG~d~ 239 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILALAGCDR 239 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHHHHHHHCCCe
Confidence 3588899999999865211110 1111 1234567788899888864 678888889885
No 28
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=32.78 E-value=10 Score=26.41 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCC
Q 031277 16 KARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNG 56 (162)
Q Consensus 16 ~~~~~v~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dg 56 (162)
.+.+.|++++.........||+.+- .|||.|
T Consensus 9 ~A~~~i~~ll~~~~~~~~~LRi~v~----------~gGCsG 39 (92)
T TIGR01911 9 DAYEEFKDFLKENDIDNDVIRIHFA----------GMGCMG 39 (92)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEEe----------CCCccC
Confidence 4556667666443333334787665 688988
No 29
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=29.06 E-value=43 Score=26.73 Aligned_cols=50 Identities=24% Similarity=0.397 Sum_probs=34.3
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC----------hhhhHH--hhcCCCC
Q 031277 106 TGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLS----------DKDIVA--LSGGHTL 162 (162)
Q Consensus 106 ~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gl~----------~~e~Va--L~GaHti 162 (162)
+|...+..++||.|...- ++..-+.++.+.+++.|+. ++|++. ++|+|.+
T Consensus 121 AGA~yvsP~vgR~~~~g~-------dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~v 182 (211)
T cd00956 121 AGATYVSPFVGRIDDLGG-------DGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAI 182 (211)
T ss_pred cCCCEEEEecChHhhcCC-------CHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEE
Confidence 466778889999887532 2234466888888888755 566664 5688853
No 30
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=28.88 E-value=49 Score=22.62 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=15.7
Q ss_pred HHHHHHHHHCCCChhhhHHhhc
Q 031277 137 PHLRDIFYRMGLSDKDIVALSG 158 (162)
Q Consensus 137 ~~l~~~F~~~Gl~~~e~VaL~G 158 (162)
+.|-..|++.||+..+|-.|+-
T Consensus 11 DtLs~iF~~~gls~~dl~~v~~ 32 (85)
T PF04225_consen 11 DTLSTIFRRAGLSASDLYAVLE 32 (85)
T ss_dssp --HHHHHHHTT--HHHHHHHHH
T ss_pred CcHHHHHHHcCCCHHHHHHHHh
Confidence 3477899999999999988874
No 31
>KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism]
Probab=26.46 E-value=1.9e+02 Score=25.76 Aligned_cols=65 Identities=17% Similarity=0.318 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCcCC---hhhhcCCCCChhH-HHHHHHHHHHhhCC
Q 031277 12 KEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRN---EEEYSHGSNNGLK-IALDFCEEVKAKHP 87 (162)
Q Consensus 12 ~~~~~~~~~v~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~---~~E~~~~~N~gl~-~~~~~i~~ik~~~p 87 (162)
.+++++|++||++.+.. +.|--|.+ ..|+-...-.|+. .+-++++.|+....
T Consensus 204 eqle~Ir~Dir~Fke~~------------------------~ldkViVLWTANTERy~~V~~GlNdT~enl~~si~~~~~ 259 (512)
T KOG0693|consen 204 EQLEQIRKDIREFKEEN------------------------KLDKVIVLWTANTERYSNVIPGLNDTAENLLESIEKDES 259 (512)
T ss_pred HHHHHHHHHHHHHHHhc------------------------CCceEEEEEecCcceeeccccccchHHHHHHHHHhcCcc
Confidence 57889999999887542 22222221 1243333333443 23456777776555
Q ss_pred CCCHHHHHHhhhh
Q 031277 88 KITYADLYQLAGV 100 (162)
Q Consensus 88 ~VS~ADiialAa~ 100 (162)
.||-+-|.|+|..
T Consensus 260 EisPStifA~Asi 272 (512)
T KOG0693|consen 260 EISPSTIFAIASI 272 (512)
T ss_pred ccChHHHHHHHHH
Confidence 7888888777654
No 32
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=26.10 E-value=48 Score=26.64 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=33.9
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCh----------hhhH--HhhcCCCC
Q 031277 106 TGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSD----------KDIV--ALSGGHTL 162 (162)
Q Consensus 106 ~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gl~~----------~e~V--aL~GaHti 162 (162)
+|.-.+..+.||.|...- ++..-+.++.+.++..|++. +++. +++|+|++
T Consensus 121 aGa~yispyvgRi~d~g~-------dg~~~v~~~~~~~~~~~~~tkIlaAS~r~~~~v~~~~~~G~d~v 182 (213)
T TIGR00875 121 AGATYVSPFVGRLDDIGG-------DGMKLIEEVKTIFENHAPDTEVIAASVRHPRHVLEAALIGADIA 182 (213)
T ss_pred cCCCEEEeecchHHHcCC-------CHHHHHHHHHHHHHHcCCCCEEEEeccCCHHHHHHHHHcCCCEE
Confidence 366678899999987531 12345678888888888764 4444 46788853
No 33
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=25.68 E-value=1.5e+02 Score=19.19 Aligned_cols=35 Identities=20% Similarity=0.080 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHhhC----C-CCCHHHHHHhhhhhhhhcc
Q 031277 72 LKIALDFCEEVKAKH----P-KITYADLYQLAGVVAVEVT 106 (162)
Q Consensus 72 l~~~~~~i~~ik~~~----p-~VS~ADiialAa~~av~~~ 106 (162)
+.+.++.+++.-+.. . .+|+||+..+....-+...
T Consensus 33 ~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~ 72 (95)
T PF00043_consen 33 VPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERL 72 (95)
T ss_dssp HHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHh
Confidence 445566666554432 2 7999999888776655443
No 34
>PF14160 FAM110_C: Centrosome-associated C terminus
Probab=22.26 E-value=1.2e+02 Score=22.12 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHHHHCCCChhhhHHh
Q 031277 131 DAKRGAPHLRDIFYRMGLSDKDIVAL 156 (162)
Q Consensus 131 ~p~~~~~~l~~~F~~~Gl~~~e~VaL 156 (162)
.......++-.+|+.+||+++++=.|
T Consensus 15 r~S~~~sele~FF~~cGLd~~~~e~l 40 (111)
T PF14160_consen 15 RYSRALSELERFFNYCGLDPEVVERL 40 (111)
T ss_pred ccCccHHHHHHHHHHcCCCHHHHHhh
Confidence 34556789999999999998665544
No 35
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=22.24 E-value=1.2e+02 Score=18.01 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=16.0
Q ss_pred HHHHHHHHCCCChhhhHHhh
Q 031277 138 HLRDIFYRMGLSDKDIVALS 157 (162)
Q Consensus 138 ~l~~~F~~~Gl~~~e~VaL~ 157 (162)
++.......||+..+++.+|
T Consensus 12 ~L~~~~~~~~l~~~~vl~~S 31 (45)
T PF09388_consen 12 ELNELAEKKGLTDPEVLELS 31 (45)
T ss_dssp HHHHHHHHCCTTCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHH
Confidence 45667778899999998876
No 36
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=21.63 E-value=93 Score=23.04 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHCCCChhhhHHhhc
Q 031277 135 GAPHLRDIFYRMGLSDKDIVALSG 158 (162)
Q Consensus 135 ~~~~l~~~F~~~Gl~~~e~VaL~G 158 (162)
+.++-+++.++|||+.+|+=.+++
T Consensus 22 p~~~k~~FL~sKGLt~~EI~~al~ 45 (136)
T PF04695_consen 22 PLEKKIAFLESKGLTEEEIDEALG 45 (136)
T ss_dssp -HHHHHHHHHHCT--HHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHH
Confidence 466677888999999999876663
Done!