Your job contains 1 sequence.
>031280
MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC
LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV
LDSIREQLEALEKKYEDKTGLQSPEKIEASKRRKAAVGFGKS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 031280
(162 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2222667 - symbol:PDF1B "peptide deformylase 1B... 693 2.7e-68 1
GENEDB_PFALCIPARUM|PFI0380c - symbol:PFI0380c "formylmeth... 298 1.9e-26 1
UNIPROTKB|Q8I372 - symbol:PFI0380c "Formylmethionine defo... 298 1.9e-26 1
TIGR_CMR|BA_4005 - symbol:BA_4005 "polypeptide deformylas... 229 4.0e-19 1
UNIPROTKB|Q9KN16 - symbol:def2 "Peptide deformylase 2" sp... 228 5.1e-19 1
TIGR_CMR|VC_A0150 - symbol:VC_A0150 "polypeptide deformyl... 228 5.1e-19 1
TIGR_CMR|SO_0032 - symbol:SO_0032 "polypeptide deformylas... 221 2.8e-18 1
TIGR_CMR|CPS_0020 - symbol:CPS_0020 "polypeptide deformyl... 220 3.6e-18 1
UNIPROTKB|P0A6K3 - symbol:def species:83333 "Escherichia ... 218 5.8e-18 1
TIGR_CMR|SPO_3219 - symbol:SPO_3219 "peptide deformylase"... 214 1.6e-17 1
UNIPROTKB|Q9KVU3 - symbol:def1 "Peptide deformylase 1" sp... 213 2.0e-17 1
TIGR_CMR|CPS_0407 - symbol:CPS_0407 "polypeptide deformyl... 213 2.0e-17 1
TIGR_CMR|VC_0046 - symbol:VC_0046 "polypeptide deformylas... 213 2.0e-17 1
TIGR_CMR|SO_2530 - symbol:SO_2530 "polypeptide deformylas... 209 5.3e-17 1
TIGR_CMR|CHY_1484 - symbol:CHY_1484 "peptide deformylase"... 204 1.8e-16 1
TIGR_CMR|DET_0760 - symbol:DET_0760 "peptide deformylase"... 204 1.8e-16 1
TIGR_CMR|GSU_0129 - symbol:GSU_0129 "polypeptide deformyl... 199 6.0e-16 1
TIGR_CMR|SPO_3218 - symbol:SPO_3218 "peptide deformylase"... 189 6.9e-15 1
TIGR_CMR|NSE_0392 - symbol:NSE_0392 "peptide deformylase"... 188 8.8e-15 1
TAIR|locus:2037733 - symbol:PDF1A "peptide deformylase 1A... 187 1.1e-14 1
TIGR_CMR|APH_1372 - symbol:APH_1372 "peptide deformylase"... 186 1.4e-14 1
TIGR_CMR|SO_1062 - symbol:SO_1062 "polypeptide deformylas... 180 6.2e-14 1
TIGR_CMR|GSU_3456 - symbol:GSU_3456 "polypeptide deformyl... 174 2.7e-13 1
TIGR_CMR|BA_4187 - symbol:BA_4187 "polypeptide deformylas... 173 3.4e-13 1
RGD|1582894 - symbol:Pdf "peptide deformylase (mitochondr... 170 7.1e-13 1
RGD|2321990 - symbol:LOC100363967 "peptide deformylase-li... 170 7.1e-13 1
UNIPROTKB|F1N5S7 - symbol:PDF "Uncharacterized protein" s... 166 1.9e-12 1
UNIPROTKB|J9NUA4 - symbol:PDF "Uncharacterized protein" s... 166 1.9e-12 1
FB|FBgn0051278 - symbol:CG31278 species:7227 "Drosophila ... 164 3.1e-12 1
UNIPROTKB|Q9HBH1 - symbol:PDF "Peptide deformylase, mitoc... 163 3.9e-12 1
UNIPROTKB|F1S391 - symbol:PDF "Uncharacterized protein" s... 163 3.9e-12 1
TIGR_CMR|SPO_3217 - symbol:SPO_3217 "peptide deformylase"... 163 3.9e-12 1
TIGR_CMR|CJE_0184 - symbol:CJE_0184 "peptide deformylase"... 162 5.0e-12 1
FB|FBgn0051373 - symbol:CG31373 species:7227 "Drosophila ... 161 6.4e-12 1
ZFIN|ZDB-GENE-050913-42 - symbol:pdf "peptide deformylase... 157 1.7e-11 1
DICTYBASE|DDB_G0288157 - symbol:DDB_G0288157 "Peptide def... 118 2.0e-11 2
UNIPROTKB|P96275 - symbol:def "Peptide deformylase" speci... 156 2.2e-11 1
TIGR_CMR|ECH_0073 - symbol:ECH_0073 "peptide deformylase"... 142 6.6e-10 1
TIGR_CMR|CBU_0993 - symbol:CBU_0993 "peptide deformylase"... 129 1.6e-08 1
TIGR_CMR|APH_1012 - symbol:APH_1012 "putative polypeptide... 124 5.3e-08 1
TIGR_CMR|ECH_0939 - symbol:ECH_0939 "putative polypeptide... 111 1.8e-05 1
TIGR_CMR|CBU_1879 - symbol:CBU_1879 "polypeptide deformyl... 107 0.00010 1
>TAIR|locus:2222667 [details] [associations]
symbol:PDF1B "peptide deformylase 1B" species:3702
"Arabidopsis thaliana" [GO:0005506 "iron ion binding" evidence=IEA]
[GO:0006412 "translation" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0042586 "peptide deformylase activity"
evidence=IEA;ISS;IDA] [GO:0010027 "thylakoid membrane organization"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA]
InterPro:IPR000181 PRINTS:PR01576 Pfam:PF01327 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009507 GO:GO:0009570
GO:GO:0005506 GO:GO:0006412 eggNOG:COG0242 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 EMBL:AF269165 EMBL:AL163792
EMBL:AY050879 EMBL:AY096673 EMBL:AY085417 IPI:IPI00542984
PIR:T48639 RefSeq:NP_196970.1 RefSeq:NP_850821.1 UniGene:At.5087
PDB:3CPM PDB:3M6O PDB:3M6P PDB:3M6Q PDB:3M6R PDB:3O3J PDB:3PN2
PDB:3PN3 PDB:3PN4 PDB:3PN5 PDB:3PN6 PDBsum:3CPM PDBsum:3M6O
PDBsum:3M6P PDBsum:3M6Q PDBsum:3M6R PDBsum:3O3J PDBsum:3PN2
PDBsum:3PN3 PDBsum:3PN4 PDBsum:3PN5 PDBsum:3PN6
ProteinModelPortal:Q9FUZ2 SMR:Q9FUZ2 IntAct:Q9FUZ2 STRING:Q9FUZ2
PaxDb:Q9FUZ2 PRIDE:Q9FUZ2 EnsemblPlants:AT5G14660.1
EnsemblPlants:AT5G14660.2 GeneID:831318 KEGG:ath:AT5G14660
TAIR:At5g14660 HOGENOM:HOG000243509 InParanoid:Q9FUZ2 OMA:PEQSHEI
PhylomeDB:Q9FUZ2 ProtClustDB:CLSN2687238 SABIO-RK:Q9FUZ2
EvolutionaryTrace:Q9FUZ2 Genevestigator:Q9FUZ2 GermOnline:AT5G14660
Uniprot:Q9FUZ2
Length = 273
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 126/161 (78%), Positives = 150/161 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNP++ KYS+K++P++EGC
Sbjct: 112 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGC 171
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+G+LFF+RMTD V
Sbjct: 172 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQV 231
Query: 121 LDSIREQLEALEKKYEDKTGLQSPEKIEASKRRKAAVGFGK 161
LDSIRE+LEALEKKYE+KTGL SPE++EA ++RKA VGFGK
Sbjct: 232 LDSIREELEALEKKYEEKTGLPSPERVEARQKRKAGVGFGK 272
>GENEDB_PFALCIPARUM|PFI0380c [details] [associations]
symbol:PFI0380c "formylmethionine deformylase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=IDA] HAMAP:MF_00163 InterPro:IPR000181
PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327 GO:GO:0005506
GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 OMA:PEQSHEI GO:GO:0008463 GO:GO:0020011
EMBL:AL844508 RefSeq:XP_001351951.1 PDB:1JYM PDB:1RL4 PDB:1RQC
PDBsum:1JYM PDBsum:1RL4 PDBsum:1RQC ProteinModelPortal:Q8I372
SMR:Q8I372 EnsemblProtists:PFI0380c:mRNA GeneID:813356
KEGG:pfa:PFI0380c EuPathDB:PlasmoDB:PF3D7_0907900 KO:K01450
ProtClustDB:CLSZ2433563 EvolutionaryTrace:Q8I372 Uniprot:Q8I372
Length = 241
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 62/137 (45%), Positives = 86/137 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MFD+MY++ GIGLSAPQV I+ +++V+N + E R E E + +NP + + S + EG
Sbjct: 96 MFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEG 155
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLSFPGI VERP V I DING + L + +R+FQHEFDHL G LF ++MT
Sbjct: 156 CLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQV 215
Query: 120 VLDSIREQLEALEKKYE 136
+R +L L + Y+
Sbjct: 216 DKKKVRPKLNELIRDYK 232
>UNIPROTKB|Q8I372 [details] [associations]
symbol:PFI0380c "Formylmethionine deformylase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=IDA] HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749
PRINTS:PR01576 Pfam:PF01327 GO:GO:0005506 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:PEQSHEI
GO:GO:0008463 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001351951.1
PDB:1JYM PDB:1RL4 PDB:1RQC PDBsum:1JYM PDBsum:1RL4 PDBsum:1RQC
ProteinModelPortal:Q8I372 SMR:Q8I372 EnsemblProtists:PFI0380c:mRNA
GeneID:813356 KEGG:pfa:PFI0380c EuPathDB:PlasmoDB:PF3D7_0907900
KO:K01450 ProtClustDB:CLSZ2433563 EvolutionaryTrace:Q8I372
Uniprot:Q8I372
Length = 241
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 62/137 (45%), Positives = 86/137 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MFD+MY++ GIGLSAPQV I+ +++V+N + E R E E + +NP + + S + EG
Sbjct: 96 MFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEG 155
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLSFPGI VERP V I DING + L + +R+FQHEFDHL G LF ++MT
Sbjct: 156 CLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQV 215
Query: 120 VLDSIREQLEALEKKYE 136
+R +L L + Y+
Sbjct: 216 DKKKVRPKLNELIRDYK 232
>TIGR_CMR|BA_4005 [details] [associations]
symbol:BA_4005 "polypeptide deformylase" species:198094
"Bacillus anthracis str. Ames" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 eggNOG:COG0242
HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 RefSeq:NP_846247.1 RefSeq:YP_020646.1
RefSeq:YP_029969.1 ProteinModelPortal:Q81WH1 SMR:Q81WH1
DNASU:1086728 EnsemblBacteria:EBBACT00000010618
EnsemblBacteria:EBBACT00000015698 EnsemblBacteria:EBBACT00000019234
GeneID:1086728 GeneID:2816204 GeneID:2852977 KEGG:ban:BA_4005
KEGG:bar:GBAA_4005 KEGG:bat:BAS3718 OMA:IQIGVPR
ProtClustDB:PRK12846 BioCyc:BANT260799:GJAJ-3776-MONOMER
BioCyc:BANT261594:GJ7F-3893-MONOMER Uniprot:Q81WH1
Length = 156
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 48/118 (40%), Positives = 76/118 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + +G+ + +I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVD-IGD--DTGKIELINPSILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG++ +VER + +K+ A++ G F + L AR QHE DHL G+LF ++T
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGLLARAIQHEIDHLHGVLFTSKVT 147
>UNIPROTKB|Q9KN16 [details] [associations]
symbol:def2 "Peptide deformylase 2" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0008463
"formylmethionine deformylase activity" evidence=ISS]
HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005506 GO:GO:0006412 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0006464 eggNOG:COG0242 KO:K01462
GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
ProtClustDB:PRK12846 GO:GO:0008463 PIR:C82494 RefSeq:NP_232550.1
PDB:3QU1 PDBsum:3QU1 ProteinModelPortal:Q9KN16 SMR:Q9KN16
DNASU:2612555 GeneID:2612555 KEGG:vch:VCA0150 PATRIC:20084873
OMA:DDSNEGC EvolutionaryTrace:Q9KN16 Uniprot:Q9KN16
Length = 168
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 57/134 (42%), Positives = 79/134 (58%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R + +VL+NP+V SNK + +EG
Sbjct: 34 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDQ--PLVLINPKVVSGSNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +ADVER SV ++A D G + SD A V QHE DHL G LF D
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHLSGNLFI-----D 145
Query: 120 VLDSIREQLEALEK 133
L +++Q+ A++K
Sbjct: 146 YLSPLKQQM-AMKK 158
>TIGR_CMR|VC_A0150 [details] [associations]
symbol:VC_A0150 "polypeptide deformylase" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0006464 eggNOG:COG0242 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 ProtClustDB:PRK12846
GO:GO:0008463 PIR:C82494 RefSeq:NP_232550.1 PDB:3QU1 PDBsum:3QU1
ProteinModelPortal:Q9KN16 SMR:Q9KN16 DNASU:2612555 GeneID:2612555
KEGG:vch:VCA0150 PATRIC:20084873 OMA:DDSNEGC
EvolutionaryTrace:Q9KN16 Uniprot:Q9KN16
Length = 168
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 57/134 (42%), Positives = 79/134 (58%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R + +VL+NP+V SNK + +EG
Sbjct: 34 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDQ--PLVLINPKVVSGSNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +ADVER SV ++A D G + SD A V QHE DHL G LF D
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHLSGNLFI-----D 145
Query: 120 VLDSIREQLEALEK 133
L +++Q+ A++K
Sbjct: 146 YLSPLKQQM-AMKK 158
>TIGR_CMR|SO_0032 [details] [associations]
symbol:SO_0032 "polypeptide deformylase" species:211586
"Shewanella oneidensis MR-1" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE014299 GenomeReviews:AE014299_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 ProtClustDB:PRK00150
RefSeq:NP_715674.1 ProteinModelPortal:Q8EKQ8 SMR:Q8EKQ8
GeneID:1167930 KEGG:son:SO_0032 PATRIC:23519755 OMA:EMDQYQE
Uniprot:Q8EKQ8
Length = 168
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 54/134 (40%), Positives = 78/134 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV + QL+V + + + E + V +NP + S EEGC
Sbjct: 35 MFETMYQEKGIGLAATQVDYHKQLIVMD-LQDEVERPK-VFINPEIIASSGDFCN-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+A V+R E V + A D +G F+V DL A QHE DHL+G LF + ++
Sbjct: 92 LSVPGIYAKVDRAEFVTVKALDRHGNEFTVEADDLFAICIQHEMDHLKGKLFVDYLSPLK 151
Query: 121 LDSIREQLEALEKK 134
I+++LE K+
Sbjct: 152 RQRIKQKLEKAAKQ 165
>TIGR_CMR|CPS_0020 [details] [associations]
symbol:CPS_0020 "polypeptide deformylase" species:167879
"Colwellia psychrerythraea 34H" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:EMDQYQE
RefSeq:YP_266802.1 ProteinModelPortal:Q48AS8 SMR:Q48AS8
STRING:Q48AS8 GeneID:3519823 KEGG:cps:CPS_0020 PATRIC:21463475
BioCyc:CPSY167879:GI48-137-MONOMER Uniprot:Q48AS8
Length = 171
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 46/129 (35%), Positives = 80/129 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY+ +G+GL+A QV I+ +++V + E + + I+ +NP + SN+ EEGC
Sbjct: 35 MLATMYEENGVGLAATQVDIHQRIVVMD-TSEDND-QPIIFINPEIIATSNETSINEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG +A V+R ++ + A D +G FS++ ++L + QHE DHL+G+LF + ++
Sbjct: 93 LSVPGTYAKVDRHDACTVKALDRHGKEFSLNATELQSICIQHELDHLKGVLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
I+++LE
Sbjct: 153 RQRIQKKLE 161
>UNIPROTKB|P0A6K3 [details] [associations]
symbol:def species:83333 "Escherichia coli K-12"
[GO:0008270 "zinc ion binding" evidence=IDA] [GO:0042586 "peptide
deformylase activity" evidence=IEA;IDA] [GO:0016787 "hydrolase
activity" evidence=IDA] [GO:0031365 "N-terminal protein amino acid
modification" evidence=IDA] [GO:0008198 "ferrous iron binding"
evidence=IDA] [GO:0043686 "co-translational protein modification"
evidence=IPI] [GO:0006412 "translation" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00163 InterPro:IPR000181
PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327 GO:GO:0008198
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0008270 EMBL:U18997
GO:GO:0031365 eggNOG:COG0242 KO:K01462 GO:GO:0042586 GO:GO:0043686
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:IQIGVPR
ProtClustDB:PRK00150 EMBL:X77800 EMBL:X63666 EMBL:X65946
EMBL:X77091 PIR:S23107 RefSeq:NP_417745.1 RefSeq:YP_492146.1
PDB:1BS4 PDB:1BS5 PDB:1BS6 PDB:1BS7 PDB:1BS8 PDB:1BSJ PDB:1BSK
PDB:1BSZ PDB:1DEF PDB:1DFF PDB:1DTF PDB:1G27 PDB:1G2A PDB:1ICJ
PDB:1LRU PDB:1XEM PDB:1XEN PDB:1XEO PDB:2AI8 PDB:2DEF PDB:2DTF
PDB:2KMN PDB:2VHM PDB:2W3T PDB:2W3U PDB:3K6L PDB:4AL2 PDB:4AL3
PDBsum:1BS4 PDBsum:1BS5 PDBsum:1BS6 PDBsum:1BS7 PDBsum:1BS8
PDBsum:1BSJ PDBsum:1BSK PDBsum:1BSZ PDBsum:1DEF PDBsum:1DFF
PDBsum:1DTF PDBsum:1G27 PDBsum:1G2A PDBsum:1ICJ PDBsum:1LRU
PDBsum:1XEM PDBsum:1XEN PDBsum:1XEO PDBsum:2AI8 PDBsum:2DEF
PDBsum:2DTF PDBsum:2KMN PDBsum:2VHM PDBsum:2W3T PDBsum:2W3U
PDBsum:3K6L PDBsum:4AL2 PDBsum:4AL3 ProteinModelPortal:P0A6K3
SMR:P0A6K3 DIP:DIP-47953N IntAct:P0A6K3 PaxDb:P0A6K3 PRIDE:P0A6K3
EnsemblBacteria:EBESCT00000002247 EnsemblBacteria:EBESCT00000017291
GeneID:12934422 GeneID:947780 KEGG:ecj:Y75_p3890 KEGG:eco:b3287
PATRIC:32122006 EchoBASE:EB1410 EcoGene:EG11440
BioCyc:EcoCyc:EG11440-MONOMER BioCyc:ECOL316407:JW3248-MONOMER
BioCyc:MetaCyc:EG11440-MONOMER SABIO-RK:P0A6K3 BindingDB:P0A6K3
ChEMBL:CHEMBL4976 EvolutionaryTrace:P0A6K3 Genevestigator:P0A6K3
Uniprot:P0A6K3
Length = 169
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 54/133 (40%), Positives = 78/133 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+A QV I+ +++V + V E + E +VL+NP + + S + EEGC
Sbjct: 35 MFETMYAEEGIGLAATQVDIHQRIIVID-VSENRD-ERLVLINPELLEKSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A V R E VKI A D +G F + L A QHE DHL G LF + ++
Sbjct: 92 LSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLK 151
Query: 121 LDSIREQLEALEK 133
IR+++E L++
Sbjct: 152 QQRIRQKVEKLDR 164
>TIGR_CMR|SPO_3219 [details] [associations]
symbol:SPO_3219 "peptide deformylase" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:YP_168422.1 ProteinModelPortal:Q5LNI5
GeneID:3193782 KEGG:sil:SPO3219 PATRIC:23379885 OMA:HERVVVK
ProtClustDB:CLSK934098 Uniprot:Q5LNI5
Length = 172
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 50/135 (37%), Positives = 76/135 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGE-GEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+G+ +L+V + V E +V+ NPRV S++ YEEG
Sbjct: 34 MLETMYDAPGIGLAAPQIGVLDRLIVLDCVKEESAPARPLVMFNPRVVAASDETNIYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +A+V RP+ V ++ D +G S + L A QHE DHL G LF + +
Sbjct: 94 CLSIPEQYAEVTRPKVVDVEWIDRDGKLQSETFDGLWATCVQHEIDHLDGKLFIDYLKPL 153
Query: 120 VLDSIREQLEALEKK 134
I +++ L+++
Sbjct: 154 KRQMITRKMQKLKRE 168
>UNIPROTKB|Q9KVU3 [details] [associations]
symbol:def1 "Peptide deformylase 1" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0008463
"formylmethionine deformylase activity" evidence=ISS]
HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005506 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006464 eggNOG:COG0242 KO:K01462
GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
ProtClustDB:PRK00150 OMA:EMDQYQE PIR:A82373 RefSeq:NP_229705.1
PDB:3FWX PDBsum:3FWX ProteinModelPortal:Q9KVU3 SMR:Q9KVU3
DNASU:2614445 GeneID:2614445 KEGG:vch:VC0046 PATRIC:20079140
EvolutionaryTrace:Q9KVU3 GO:GO:0008463 Uniprot:Q9KVU3
Length = 169
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 53/139 (38%), Positives = 79/139 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + MY +GIGL+A QV I+ +++V + + E + + +VL+NP + K I EEG
Sbjct: 35 MLETMYAEEGIGLAATQVDIHQRIVVID-ISETRD-QPMVLINPEIIEKRGEDGI--EEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS PG A V R V + A D NG + DL A QHE DHL G LF + ++
Sbjct: 91 CLSVPGARALVPRAAEVTVKALDRNGQEYQFDADDLLAICVQHELDHLAGKLFVDYLSPL 150
Query: 120 VLDSIREQLEALEKKYEDK 138
+ I+E+LE + K++ +K
Sbjct: 151 KRNRIKEKLEKI-KRFNEK 168
>TIGR_CMR|CPS_0407 [details] [associations]
symbol:CPS_0407 "polypeptide deformylase" species:167879
"Colwellia psychrerythraea 34H" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 ProtClustDB:PRK12846
RefSeq:YP_267165.1 ProteinModelPortal:Q489U9 SMR:Q489U9
STRING:Q489U9 GeneID:3521653 KEGG:cps:CPS_0407 PATRIC:21464175
OMA:DVERFTH BioCyc:CPSY167879:GI48-502-MONOMER Uniprot:Q489U9
Length = 166
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 57/142 (40%), Positives = 81/142 (57%)
Query: 1 MFDVMYKT-DGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ + MY T DGIGL+A QVG + ++V + R E +VLVNP + + +EG
Sbjct: 34 LIETMYDTEDGIGLAATQVGRSEAVVVIDISDNRDE--LLVLVNPVIT-HGEATAKGQEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS PG +ADVER V ++A D NG +++ + A V QHE DHL+G LF D
Sbjct: 91 CLSIPGYYADVERFTHVTVEALDRNGKELTITSDEFLAIVMQHEIDHLKGKLFI-----D 145
Query: 120 VLDSIREQLEALEK-KYEDKTG 140
L +++Q+ AL+K K K G
Sbjct: 146 YLSPLKQQM-ALKKVKKTIKNG 166
>TIGR_CMR|VC_0046 [details] [associations]
symbol:VC_0046 "polypeptide deformylase" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006464 eggNOG:COG0242 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 ProtClustDB:PRK00150 OMA:EMDQYQE
PIR:A82373 RefSeq:NP_229705.1 PDB:3FWX PDBsum:3FWX
ProteinModelPortal:Q9KVU3 SMR:Q9KVU3 DNASU:2614445 GeneID:2614445
KEGG:vch:VC0046 PATRIC:20079140 EvolutionaryTrace:Q9KVU3
GO:GO:0008463 Uniprot:Q9KVU3
Length = 169
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 53/139 (38%), Positives = 79/139 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + MY +GIGL+A QV I+ +++V + + E + + +VL+NP + K I EEG
Sbjct: 35 MLETMYAEEGIGLAATQVDIHQRIVVID-ISETRD-QPMVLINPEIIEKRGEDGI--EEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS PG A V R V + A D NG + DL A QHE DHL G LF + ++
Sbjct: 91 CLSVPGARALVPRAAEVTVKALDRNGQEYQFDADDLLAICVQHELDHLAGKLFVDYLSPL 150
Query: 120 VLDSIREQLEALEKKYEDK 138
+ I+E+LE + K++ +K
Sbjct: 151 KRNRIKEKLEKI-KRFNEK 168
>TIGR_CMR|SO_2530 [details] [associations]
symbol:SO_2530 "polypeptide deformylase" species:211586
"Shewanella oneidensis MR-1" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE014299 GenomeReviews:AE014299_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 ProtClustDB:PRK12846
RefSeq:NP_718116.1 ProteinModelPortal:Q8EE60 SMR:Q8EE60
GeneID:1170239 KEGG:son:SO_2530 PATRIC:23524691 OMA:NEGCISV
Uniprot:Q8EE60
Length = 163
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 55/138 (39%), Positives = 79/138 (57%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ + MY TD GIGL++ QVG ++V + + E + + +VLVNP + + S + + EEG
Sbjct: 34 LIETMYHTDDGIGLASTQVGSTDAVIVID-LSETRD-QPLVLVNPEIVEKSGEYVG-EEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS PG A V R E VK+ A D G + D A V QHE DHL G +F E
Sbjct: 91 CLSIPGYRAKVTRFEKVKVTALDRQGKAIEIETDDFLAIVLQHEIDHLHGKVFIEH---- 146
Query: 120 VLDSIREQLEALEK--KY 135
L ++++Q+ AL+K KY
Sbjct: 147 -LSTLKQQI-ALKKVRKY 162
>TIGR_CMR|CHY_1484 [details] [associations]
symbol:CHY_1484 "peptide deformylase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412
eggNOG:COG0242 HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 ProtClustDB:PRK00150
RefSeq:YP_360316.1 HSSP:P0A6K3 ProteinModelPortal:Q3AC18
STRING:Q3AC18 GeneID:3727424 KEGG:chy:CHY_1484 PATRIC:21276099
OMA:YVKVRAQ BioCyc:CHYD246194:GJCN-1483-MONOMER Uniprot:Q3AC18
Length = 152
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 47/121 (38%), Positives = 70/121 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY +G+GL+APQ+G++ + +V + GEG I L+NP + + S + E GC
Sbjct: 35 MADTMYAYNGVGLAAPQIGVSKRAIVVDV----GEGL-IELINPEIIEVSGEEKDIE-GC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG+ +V R + V + + G + L AR FQHE DHL GILF E+ D++
Sbjct: 89 LSVPGVQGEVVRAKKVTVKGLNRYGEEIVIPAEGLLARAFQHEIDHLNGILFVEK-ADNI 147
Query: 121 L 121
+
Sbjct: 148 V 148
>TIGR_CMR|DET_0760 [details] [associations]
symbol:DET_0760 "peptide deformylase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000027 GenomeReviews:CP000027_GR
eggNOG:COG0242 HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 ProtClustDB:PRK00150 HSSP:P0A6K3
RefSeq:YP_181493.1 ProteinModelPortal:Q3Z8F6 STRING:Q3Z8F6
GeneID:3229925 KEGG:det:DET0760 PATRIC:21608581 OMA:AMATIRQ
BioCyc:DETH243164:GJNF-761-MONOMER Uniprot:Q3Z8F6
Length = 167
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 46/134 (34%), Positives = 76/134 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M DG GL+APQVG++++L+VF E E VL+NP + K + EGC
Sbjct: 35 MIETMKSADGAGLAAPQVGVSLRLIVFR---EPDAKEATVLINPEIVKKEGQR-QVTEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM-TDD 119
LS PG ++ R E+V D +G F + + + A++ +HE +HL GIL+ + + +++
Sbjct: 91 LSIPGYFGELTRAETVTAKGLDRHGKAFRIKGTGVVAQLLEHETEHLDGILYIDHLESEE 150
Query: 120 VLDSIREQLEALEK 133
L I+ + E E+
Sbjct: 151 KLHEIQPEDEIPEE 164
>TIGR_CMR|GSU_0129 [details] [associations]
symbol:GSU_0129 "polypeptide deformylase" species:243231
"Geobacter sulfurreducens PCA" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE017180 GenomeReviews:AE017180_GR
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:NP_951191.2 GeneID:2687913
KEGG:gsu:GSU0129 PATRIC:22023006 ProtClustDB:CLSK827656
BioCyc:GSUL243231:GH27-140-MONOMER Uniprot:Q74GW5
Length = 167
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 50/140 (35%), Positives = 77/140 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY G+GL+APQ+G++ +++V + V +R E E IV +NP + + EEG
Sbjct: 34 MAETMYDAQGVGLAAPQIGVSQRVIVID-VSQRDERPELIVCINPVIIHGEGESYE-EEG 91
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P A+V R E V + + ++ G L A FQHE DHL G+LF D
Sbjct: 92 CLSVPKYSANVHRHERVVVKSLNLEGEEVVHRAEGLLAIAFQHEIDHLDGVLFV-----D 146
Query: 120 VLDSIREQLEALEKKYEDKT 139
L ++++++ +KKY T
Sbjct: 147 HLSALKKEM--FKKKYRRMT 164
>TIGR_CMR|SPO_3218 [details] [associations]
symbol:SPO_3218 "peptide deformylase" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:YP_168421.1 ProteinModelPortal:Q5LNI6
GeneID:3195601 KEGG:sil:SPO3218 PATRIC:23379883 OMA:KLIRPAK
ProtClustDB:CLSK751629 Uniprot:Q5LNI6
Length = 165
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 39/116 (33%), Positives = 57/116 (49%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY G GL+APQVG+ + V + + G + ++NP + + EE C
Sbjct: 33 MFDTMYAAKGRGLAAPQVGVMQRFFVMDVGWKEGPPSPMAMINPVIMAAERVPVEMEEVC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS PG+ V RP++V + G AR QHEFDHL G++ + +
Sbjct: 93 LSIPGLSVPVTRPKAVTVQWTAPEGDIHMADFDGFEARCIQHEFDHLNGVVTLDHL 148
>TIGR_CMR|NSE_0392 [details] [associations]
symbol:NSE_0392 "peptide deformylase" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 RefSeq:YP_506280.1
ProteinModelPortal:Q2GE16 STRING:Q2GE16 GeneID:3931718
KEGG:nse:NSE_0392 PATRIC:22680845 OMA:KANGWLA
ProtClustDB:CLSK2527811 BioCyc:NSEN222891:GHFU-416-MONOMER
Uniprot:Q2GE16
Length = 186
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 44/150 (29%), Positives = 76/150 (50%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV-------------FNPVGERGEGEEIVLVNPRVN 47
M + MY GIGL+A QVG+ +++V N VG + G VNP +
Sbjct: 35 MLETMYHCGGIGLAAVQVGVLERIIVVDVPVGKEWHSSPLNHVGYKSSGGPYYFVNPEII 94
Query: 48 KYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
++S ++P +EGCLS P H ++ RP++V + + +G + + AR QHE DHL
Sbjct: 95 EFSQNLVPADEGCLSLPEQHYEIIRPDAVVVKYLNYDGEECLLKANGWLARCIQHEMDHL 154
Query: 108 QGILFFERMTDDVLDSIREQLEALEKKYED 137
G L+ ++ D ++ ++K++ +
Sbjct: 155 NGRLYVSHLSKLKHDLAIKKAAEIKKRHSE 184
>TAIR|locus:2037733 [details] [associations]
symbol:PDF1A "peptide deformylase 1A" species:3702
"Arabidopsis thaliana" [GO:0005506 "iron ion binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=ISM;IDA] [GO:0006412
"translation" evidence=ISS] [GO:0042586 "peptide deformylase
activity" evidence=IEA;ISS;IDA] [GO:0043686 "co-translational
protein modification" evidence=IDA] [GO:0009505 "plant-type cell
wall" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR000181 PRINTS:PR01576 Pfam:PF01327 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0009507 GO:GO:0009570
GO:GO:0005506 GO:GO:0006412 EMBL:AC007591 GO:GO:0009505
EMBL:AF250959 EMBL:AF361861 EMBL:AY129485 IPI:IPI00534874
PIR:E86288 RefSeq:NP_563974.1 UniGene:At.11423 UniGene:At.19791
PDB:1ZXZ PDB:1ZY0 PDB:1ZY1 PDBsum:1ZXZ PDBsum:1ZY0 PDBsum:1ZY1
ProteinModelPortal:Q9FV53 SMR:Q9FV53 STRING:Q9FV53 PaxDb:Q9FV53
PRIDE:Q9FV53 EnsemblPlants:AT1G15390.1 GeneID:838109
KEGG:ath:AT1G15390 TAIR:At1g15390 eggNOG:COG0242
HOGENOM:HOG000243508 InParanoid:Q9FV53 KO:K01462 OMA:LTSGEGC
ProtClustDB:CLSN2687814 SABIO-RK:Q9FV53 ChEMBL:CHEMBL1075041
EvolutionaryTrace:Q9FV53 Genevestigator:Q9FV53 GermOnline:AT1G15390
GO:GO:0042586 GO:GO:0043686 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079 Uniprot:Q9FV53
Length = 269
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 49/130 (37%), Positives = 67/130 (51%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER---GEGEEI-----------VLVNPRV 46
M VM G+GL+APQ+G+ ++++V E EEI V+VNP +
Sbjct: 115 MIKVMRLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVL 174
Query: 47 NKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDH 106
+ SNK + EGCLS G A VER V + D G R V+ S AR+ QHE DH
Sbjct: 175 KERSNKKALFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDH 234
Query: 107 LQGILFFERM 116
L G L+ ++M
Sbjct: 235 LDGNLYVDKM 244
>TIGR_CMR|APH_1372 [details] [associations]
symbol:APH_1372 "peptide deformylase" species:212042
"Anaplasma phagocytophilum HZ" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000235 GenomeReviews:CP000235_GR
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:YP_505871.1 STRING:Q2GID0
GeneID:3930818 KEGG:aph:APH_1372 PATRIC:20951546 OMA:LEIIHYP
ProtClustDB:CLSK747409 BioCyc:APHA212042:GHPM-1372-MONOMER
Uniprot:Q2GID0
Length = 187
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 46/142 (32%), Positives = 73/142 (51%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI--------------VLVNPRV 46
MFD MY GIGL+A QVG++ ++ V + + E EI V++NP +
Sbjct: 37 MFDTMYAEQGIGLAAVQVGVHKRIFVIDLGPKTEESSEIADDPDGYHSTCGPMVVINPEI 96
Query: 47 NKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDH 106
+ S ++ EEGCLS P V RPE + + D++G R + L +R QHE DH
Sbjct: 97 VEKSVDLVSMEEGCLSVPDQRELVVRPERIVMQYTDLHGKRKILKAQGLLSRCLQHEIDH 156
Query: 107 LQGILFFERMTDDVLDSIREQL 128
L G +F + ++ D + +++
Sbjct: 157 LNGTVFLKHISKLKRDLVMQKM 178
>TIGR_CMR|SO_1062 [details] [associations]
symbol:SO_1062 "polypeptide deformylase" species:211586
"Shewanella oneidensis MR-1" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE014299 GenomeReviews:AE014299_GR
eggNOG:COG0242 HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 RefSeq:NP_716689.1
ProteinModelPortal:Q8EHZ2 GeneID:1168899 KEGG:son:SO_1062
PATRIC:23521771 OMA:ATETEYR ProtClustDB:CLSK906069 Uniprot:Q8EHZ2
Length = 181
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 43/116 (37%), Positives = 66/116 (56%)
Query: 5 MYKTDGIGLSAPQVGINVQLMVF-NPVGERGEG----EEIVLVNPRVNKYSNKMIPYEEG 59
M + G+G++APQV + L + + ER E +V+VNP++ S ++ EEG
Sbjct: 49 MVEAKGVGIAAPQVHSPLALFIMASRPNERYPDAPLMEPLVVVNPQIVLRSLQLEKGEEG 108
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
CLS PG + RP+++ + +++ G L+ AR+FQHEFDHLQGI ER
Sbjct: 109 CLSVPGQRFTIWRPQTIVVRYQNLAGQWQHSELTGFIARIFQHEFDHLQGITLLER 164
>TIGR_CMR|GSU_3456 [details] [associations]
symbol:GSU_3456 "polypeptide deformylase" species:243231
"Geobacter sulfurreducens PCA" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE017180 GenomeReviews:AE017180_GR
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:NP_954496.1 ProteinModelPortal:Q746R2
GeneID:2686601 KEGG:gsu:GSU3456 PATRIC:22029771 OMA:SAICAPQ
ProtClustDB:CLSK829292 BioCyc:GSUL243231:GH27-3425-MONOMER
Uniprot:Q746R2
Length = 169
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 40/122 (32%), Positives = 67/122 (54%)
Query: 1 MFDVMYKTDG-IGLSAPQVGINVQLMVFNPVGER-GEGEE---IVLVNPRVNKYSNKMIP 55
+ + M + G +G++APQ+G+ +++ V + G R G+ +++VNP + S +
Sbjct: 35 LIETMREGPGSVGVAAPQIGVTLRVCVIDVSGSRHGKDNNHGLLLMVNPEIVDRSGNAV- 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARD-INGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGC+S P DVER V++ D +G+ ++ S A QHE DHL GILF +
Sbjct: 94 MREGCMSVPDYTGDVERSTEVRVRFLDGADGSEREITASGFEAVAIQHEMDHLDGILFLD 153
Query: 115 RM 116
R+
Sbjct: 154 RI 155
>TIGR_CMR|BA_4187 [details] [associations]
symbol:BA_4187 "polypeptide deformylase" species:198094
"Bacillus anthracis str. Ames" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 eggNOG:COG0242 KO:K01462
OMA:LTSGEGC GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
ProtClustDB:PRK00150 RefSeq:NP_846423.1 RefSeq:YP_020831.1
RefSeq:YP_030134.1 ProteinModelPortal:Q81MQ9 SMR:Q81MQ9
DNASU:1088919 EnsemblBacteria:EBBACT00000010470
EnsemblBacteria:EBBACT00000016119 EnsemblBacteria:EBBACT00000020183
GeneID:1088919 GeneID:2818161 GeneID:2850259 KEGG:ban:BA_4187
KEGG:bar:GBAA_4187 KEGG:bat:BAS3884 HOGENOM:HOG000243507
BioCyc:BANT260799:GJAJ-3941-MONOMER
BioCyc:BANT261594:GJ7F-4072-MONOMER Uniprot:Q81MQ9
Length = 184
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 39/113 (34%), Positives = 60/113 (53%)
Query: 10 GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYS--NKMIPYEEGCLSFPG-I 66
GIGL+APQ+GI+ +++ + G L NP++ +S + EGCLS +
Sbjct: 58 GIGLAAPQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREV 117
Query: 67 HADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
V R + + A ING + L LPA VFQHE DHL G++F++ + +
Sbjct: 118 PGYVPRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170
>RGD|1582894 [details] [associations]
symbol:Pdf "peptide deformylase (mitochondrial)" species:10116
"Rattus norvegicus" [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISO] [GO:0018206 "peptidyl-methionine modification"
evidence=ISO] [GO:0031365 "N-terminal protein amino acid
modification" evidence=ISO] [GO:0042586 "peptide deformylase
activity" evidence=ISO] REFSEQ:XM_001073696 Ncbi:XP_001073696
Length = 231
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 46/130 (35%), Positives = 69/130 (53%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV----------FNP-VGERGEGEEI---VLVNPRV 46
+ VM + +GLSAPQ+G+ +Q++V F+P + E + E VLVNP +
Sbjct: 87 LVQVMRRRGCVGLSAPQLGVPLQVLVLEFPDRLFRAFSPRLRELRQMEPFPLRVLVNPSL 146
Query: 47 NKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDH 106
++++ + EGC S G A V R ++V+I D G S S AR+ QHE DH
Sbjct: 147 RVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTARIIQHEMDH 206
Query: 107 LQGILFFERM 116
L G LF ++M
Sbjct: 207 LHGCLFIDKM 216
>RGD|2321990 [details] [associations]
symbol:LOC100363967 "peptide deformylase-like protein-like"
species:10116 "Rattus norvegicus" [GO:0005506 "iron ion binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0018206 "peptidyl-methionine modification" evidence=IEA]
[GO:0031365 "N-terminal protein amino acid modification"
evidence=IEA] [GO:0042586 "peptide deformylase activity"
evidence=IEA] HAMAP:MF_00163 InterPro:IPR000181 PRINTS:PR01576
Pfam:PF01327 RGD:2321990 GO:GO:0005739 GO:GO:0005506 GO:GO:0008284
GO:GO:0031365 GO:GO:0018206 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
GeneTree:ENSGT00390000018698 IPI:IPI00363538 PRIDE:F1LVY9
Ensembl:ENSRNOT00000036634 Uniprot:F1LVY9
Length = 255
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 46/130 (35%), Positives = 69/130 (53%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV----------FNP-VGERGEGEEI---VLVNPRV 46
+ VM + +GLSAPQ+G+ +Q++V F+P + E + E VLVNP +
Sbjct: 111 LVQVMRRRGCVGLSAPQLGVPLQVLVLEFPDRLFRAFSPRLRELRQMEPFPLRVLVNPSL 170
Query: 47 NKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDH 106
++++ + EGC S G A V R ++V+I D G S S AR+ QHE DH
Sbjct: 171 RVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTARIIQHEMDH 230
Query: 107 LQGILFFERM 116
L G LF ++M
Sbjct: 231 LHGCLFIDKM 240
>UNIPROTKB|F1N5S7 [details] [associations]
symbol:PDF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042586 "peptide deformylase activity" evidence=IEA]
[GO:0031365 "N-terminal protein amino acid modification"
evidence=IEA] [GO:0018206 "peptidyl-methionine modification"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005506 "iron ion binding" evidence=IEA]
HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005739 GO:GO:0005506 GO:GO:0008284
GO:GO:0031365 GO:GO:0018206 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420 OMA:MDSRTFT
GeneTree:ENSGT00390000018698 EMBL:DAAA02046699 IPI:IPI00712973
Ensembl:ENSBTAT00000002176 Uniprot:F1N5S7
Length = 230
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 44/138 (31%), Positives = 69/138 (50%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLM-------VFNPVGER-GEGEEI------VLVNPRV 46
+ VM + +GLSAPQ+G+ +Q++ +F R E ++ V VNP +
Sbjct: 86 LVQVMRRRHCVGLSAPQLGVPLQVLALEFPETLFRACAPRVREARQMEPFPLRVFVNPSL 145
Query: 47 NKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDH 106
++++ + EGC S G A V R ++V+I D G + S AR+ QHE DH
Sbjct: 146 RVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPRGEQVVWQASGWAARIIQHEMDH 205
Query: 107 LQGILFFERMTDDVLDSI 124
LQG LF ++M +I
Sbjct: 206 LQGCLFIDKMDSKTFTNI 223
>UNIPROTKB|J9NUA4 [details] [associations]
symbol:PDF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042586 "peptide deformylase activity"
evidence=IEA] [GO:0005506 "iron ion binding" evidence=IEA]
HAMAP:MF_00163 InterPro:IPR000181 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 GeneTree:ENSGT00390000018698
EMBL:AAEX03004108 Ensembl:ENSCAFT00000044172 OMA:EGCESIR
Uniprot:J9NUA4
Length = 245
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 45/138 (32%), Positives = 69/138 (50%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN-P----------VGERGEGEEI---VLVNPRV 46
+ VM + +GLSAPQ+G+ +Q++ F P + E + E V+VNP +
Sbjct: 101 LVQVMRRRHCVGLSAPQLGVPLQVLAFEFPEALFRACAPRLRETRQMEPFPLRVVVNPSL 160
Query: 47 NKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDH 106
++ + + EGC S G A V R ++V+I D G + S AR+ QHE DH
Sbjct: 161 RVLDSRRVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEQVVWQASGWAARIIQHEMDH 220
Query: 107 LQGILFFERMTDDVLDSI 124
LQG LF ++M +I
Sbjct: 221 LQGCLFIDKMDSKTFTNI 238
>FB|FBgn0051278 [details] [associations]
symbol:CG31278 species:7227 "Drosophila melanogaster"
[GO:0042586 "peptide deformylase activity" evidence=ISS]
[GO:0005506 "iron ion binding" evidence=IEA] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
EMBL:AE014297 GO:GO:0005506 eggNOG:COG0242 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 OMA:MDSRTFT GeneTree:ENSGT00390000018698
OrthoDB:EOG4F4QT0 EMBL:BT015988 RefSeq:NP_731494.1 UniGene:Dm.17011
HSSP:P27251 SMR:Q9VGY2 STRING:Q9VGY2 EnsemblMetazoa:FBtr0082319
GeneID:41282 KEGG:dme:Dmel_CG31278 UCSC:CG31278-RA
FlyBase:FBgn0051278 InParanoid:Q9VGY2 GenomeRNAi:41282
NextBio:823085 Uniprot:Q9VGY2
Length = 238
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 43/130 (33%), Positives = 69/130 (53%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIV-------------LVNPRV 46
M V+ K D +G++APQ+G++++++ G R E E V +NP +
Sbjct: 83 MVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGRIRKELPEAVYQARQMSELPLTIFINPVL 142
Query: 47 NKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDH 106
+ + + EGC+S G A+VER E VK+ D G + ++LS AR+ QHE DH
Sbjct: 143 TVTNYAKLKHPEGCMSVRGYSAEVERFEGVKLTGLDQLGNQSELALSGWNARIAQHEMDH 202
Query: 107 LQGILFFERM 116
L+G L+ + M
Sbjct: 203 LEGKLYTDHM 212
>UNIPROTKB|Q9HBH1 [details] [associations]
symbol:PDF "Peptide deformylase, mitochondrial"
species:9606 "Homo sapiens" [GO:0005506 "iron ion binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IMP] [GO:0018206 "peptidyl-methionine
modification" evidence=IDA] [GO:0031365 "N-terminal protein amino
acid modification" evidence=IDA] [GO:0042586 "peptide deformylase
activity" evidence=IDA] InterPro:IPR000181 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005739 GO:GO:0005506 GO:GO:0006412
GO:GO:0008284 GO:GO:0031365 GO:GO:0018206 UniGene:Hs.130849
GermOnline:ENSG00000157312 HOGENOM:HOG000243508 KO:K01462
GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 EMBL:AF239156 EMBL:AF322879
EMBL:BC019912 IPI:IPI00007060 RefSeq:NP_071736.1 PDB:3G5K PDB:3G5P
PDBsum:3G5K PDBsum:3G5P ProteinModelPortal:Q9HBH1 SMR:Q9HBH1
STRING:Q9HBH1 DMDM:17433054 PeptideAtlas:Q9HBH1 PRIDE:Q9HBH1
Ensembl:ENST00000288022 GeneID:64146 KEGG:hsa:64146 UCSC:uc002ewx.1
CTD:64146 GeneCards:GC16M069362 H-InvDB:HIX0013187 HGNC:HGNC:30012
neXtProt:NX_Q9HBH1 PharmGKB:PA144596394 HOVERGEN:HBG018948
InParanoid:Q9HBH1 OMA:MDSRTFT SABIO-RK:Q9HBH1 BindingDB:Q9HBH1
ChEMBL:CHEMBL4647 EvolutionaryTrace:Q9HBH1 GenomeRNAi:64146
NextBio:66046 Bgee:Q9HBH1 Genevestigator:Q9HBH1 Uniprot:Q9HBH1
Length = 243
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 44/130 (33%), Positives = 66/130 (50%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN---------PVGERG--EGEEI---VLVNPRV 46
+ VM + +GLSAPQ+G+ Q++ P +R + E V VNP +
Sbjct: 99 LVQVMRRRRCVGLSAPQLGVPRQVLALELPEALCRECPPRQRALRQMEPFPLRVFVNPSL 158
Query: 47 NKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDH 106
++++ + EGC S G A V R ++V+I D NG + S AR+ QHE DH
Sbjct: 159 RVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDH 218
Query: 107 LQGILFFERM 116
LQG LF ++M
Sbjct: 219 LQGCLFIDKM 228
>UNIPROTKB|F1S391 [details] [associations]
symbol:PDF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042586 "peptide deformylase activity" evidence=IEA]
[GO:0031365 "N-terminal protein amino acid modification"
evidence=IEA] [GO:0018206 "peptidyl-methionine modification"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005506 "iron ion binding" evidence=IEA]
HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005739 GO:GO:0005506 GO:GO:0008284
GO:GO:0031365 GO:GO:0018206 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420 OMA:MDSRTFT
GeneTree:ENSGT00390000018698 EMBL:FP015939
Ensembl:ENSSSCT00000003055 Uniprot:F1S391
Length = 221
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 44/138 (31%), Positives = 70/138 (50%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLM-------VFNPVGER-GEGEEI------VLVNPRV 46
+ VM + +GLSAPQ+G+ +Q++ +F+ R E ++ V VNP +
Sbjct: 77 LVQVMRRRHCVGLSAPQLGVPLQVLALEFPDALFHACAPRLREIRQMEPFPLHVFVNPSL 136
Query: 47 NKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDH 106
++++ + EGC S G A V R ++V+I D G S AR+ QHE DH
Sbjct: 137 RVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPRGEPVVWQASGWAARIIQHEMDH 196
Query: 107 LQGILFFERMTDDVLDSI 124
LQG+LF ++M +I
Sbjct: 197 LQGLLFIDKMDSKTFTNI 214
>TIGR_CMR|SPO_3217 [details] [associations]
symbol:SPO_3217 "peptide deformylase" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:YP_168420.1 ProteinModelPortal:Q5LNI7
GeneID:3194969 KEGG:sil:SPO3217 PATRIC:23379881 OMA:TVIQHEI
ProtClustDB:CLSK934097 Uniprot:Q5LNI7
Length = 165
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 35/117 (29%), Positives = 62/117 (52%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D M G+GL+APQ+G+ ++L V + ERG + L NP + S ++ ++E
Sbjct: 35 MIDTMEAMPGVGLAAPQIGVMLRLAVVDGSSERGRA--VRLANPEILHASIELREHDEAS 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
+ PG+ A ++RP +V + + G + A QH+ DHL G ++F+ ++
Sbjct: 93 PNLPGVSAKLKRPRAVTVRFLNEQGQVDRRDFVGIEATSVQHQIDHLNGRMYFDNLS 149
>TIGR_CMR|CJE_0184 [details] [associations]
symbol:CJE_0184 "peptide deformylase" species:195099
"Campylobacter jejuni RM1221" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:PEQSHEI
ProtClustDB:PRK00150 RefSeq:YP_178208.1 ProteinModelPortal:Q5HWX7
SMR:Q5HWX7 STRING:Q5HWX7 GeneID:3230947 KEGG:cjr:CJE0184
PATRIC:20042077 BioCyc:CJEJ195099:GJC0-189-MONOMER Uniprot:Q5HWX7
Length = 175
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 38/120 (31%), Positives = 65/120 (54%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG--EEIV-LVNPRVNKYSNKMIPYE 57
M++ M ++G+GL+A QV I +++++ N E E E+++ ++NP + +MI
Sbjct: 34 MYETMIASNGVGLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCT 93
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
EGCLS P +V+R + + +D G + A QHE DHL G LF E+++
Sbjct: 94 EGCLSVPDFFEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKIS 153
>FB|FBgn0051373 [details] [associations]
symbol:CG31373 species:7227 "Drosophila melanogaster"
[GO:0042586 "peptide deformylase activity" evidence=ISS]
[GO:0005506 "iron ion binding" evidence=IEA] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
EMBL:AE014297 GO:GO:0005506 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 OMA:LIGRWKR RefSeq:NP_731495.1 UniGene:Dm.26560
HSSP:P96113 ProteinModelPortal:Q8INL3 SMR:Q8INL3 MINT:MINT-970779
STRING:Q8INL3 PRIDE:Q8INL3 EnsemblMetazoa:FBtr0082318 GeneID:318700
KEGG:dme:Dmel_CG31373 UCSC:CG31373-RA FlyBase:FBgn0051373
GeneTree:ENSGT00390000018698 InParanoid:Q8INL3 OrthoDB:EOG4F4QT0
PhylomeDB:Q8INL3 GenomeRNAi:318700 NextBio:845923
ArrayExpress:Q8INL3 Bgee:Q8INL3 Uniprot:Q8INL3
Length = 196
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 47/147 (31%), Positives = 75/147 (51%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV----------FNP-VGERGEGEEI---VLVNPRV 46
M V+ D +G++APQVGI ++++V F P + E + + V +NP +
Sbjct: 41 MVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGKQEQFKPEIYEERKMSILPLAVFINPEL 100
Query: 47 NKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDH 106
S+++ + EGC+S G A+VER + V+I G + L AR+ QHE DH
Sbjct: 101 EIISSQVNKHPEGCMSVRGYSAEVERYDKVRIRGIGKLGTPSEMELEGWNARIAQHEVDH 160
Query: 107 LQGILFFERMTDDVLDSIR-EQLEALE 132
L G ++ +RM + I EQ+ A E
Sbjct: 161 LNGTIYMDRMDLSTFNCILWEQINAAE 187
>ZFIN|ZDB-GENE-050913-42 [details] [associations]
symbol:pdf "peptide deformylase (mitochondrial)"
species:7955 "Danio rerio" [GO:0042586 "peptide deformylase
activity" evidence=IEA;ISS] [GO:0005506 "iron ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=ISS] [GO:0031365 "N-terminal protein amino
acid modification" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS] [GO:0018206 "peptidyl-methionine modification"
evidence=ISS] HAMAP:MF_00163 InterPro:IPR000181 PRINTS:PR01576
Pfam:PF01327 ZFIN:ZDB-GENE-050913-42 GO:GO:0005739 GO:GO:0005506
GO:GO:0008284 GO:GO:0031365 GO:GO:0018206 eggNOG:COG0242
HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420 CTD:64146
HOVERGEN:HBG018948 OMA:MDSRTFT GeneTree:ENSGT00390000018698
EMBL:CT025859 EMBL:BC097196 IPI:IPI00513642 RefSeq:NP_001028902.1
UniGene:Dr.87399 STRING:Q4V8U4 Ensembl:ENSDART00000010129
GeneID:619248 KEGG:dre:619248 InParanoid:Q4V8U4 OrthoDB:EOG49KFRR
NextBio:20901467 Uniprot:Q4V8U4
Length = 247
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 39/136 (28%), Positives = 66/136 (48%)
Query: 4 VMYKTDGIGLSAPQVGINVQLMVFN-P-----------VGERG--EGEEIVLVNPRVNKY 49
VM K + +GLSAPQ+G+ ++++ P V RG ++ +NP++
Sbjct: 106 VMRKLECVGLSAPQIGVPLRILALEYPKKMLEESSTASVEARGLVAVPLMIFINPQLRVL 165
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQG 109
+ + ++E C S G A V R SV++ + S S PAR+ QHE DHL G
Sbjct: 166 DGRTVIFQEACESISGYSASVPRYVSVEVSGLNEKAEEVSWKASGWPARILQHEMDHLNG 225
Query: 110 ILFFERMTDDVLDSIR 125
+L+ + M +++
Sbjct: 226 VLYIDHMDSKTFINVK 241
>DICTYBASE|DDB_G0288157 [details] [associations]
symbol:DDB_G0288157 "Peptide deformylase,
mitochondrial" species:44689 "Dictyostelium discoideum" [GO:0042586
"peptide deformylase activity" evidence=IEA] [GO:0005506 "iron ion
binding" evidence=IEA] HAMAP:MF_00163 InterPro:IPR000181
PRINTS:PR01576 dictyBase:DDB_G0288157 Pfam:PF01327 GO:GO:0005506
EMBL:AAFI02000109 eggNOG:COG0242 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
RefSeq:XP_636872.1 ProteinModelPortal:Q54JC1 STRING:Q54JC1
EnsemblProtists:DDB0187806 GeneID:8626484 KEGG:ddi:DDB_G0288157
InParanoid:Q54JC1 OMA:DITGKER Uniprot:Q54JC1
Length = 243
Score = 118 (46.6 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 27/73 (36%), Positives = 36/73 (49%)
Query: 51 NKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGI 110
N I E CLS P I A V+R + I DI G + + A FQHE+DHL G
Sbjct: 144 NNTITMLESCLSVPNIFAHVQRSKRCIITFLDITGKERIIEADGILAACFQHEYDHLLGK 203
Query: 111 LFFERMTDDVLDS 123
+F +R+ L +
Sbjct: 204 IFIDRIDKSELSN 216
Score = 64 (27.6 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG 34
M+ M G G++APQ+G+N QL + + G
Sbjct: 43 MYKEMKDCTGTGIAAPQIGVNKQLFLLELPSQEG 76
>UNIPROTKB|P96275 [details] [associations]
symbol:def "Peptide deformylase" species:1773
"Mycobacterium tuberculosis" [GO:0035601 "protein deacylation"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0042586
"peptide deformylase activity" evidence=IDA] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0005506 GO:GO:0006412 EMBL:BX842573
GO:GO:0035601 eggNOG:COG0242 HOGENOM:HOG000243508 KO:K01462
GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
ProtClustDB:PRK00150 PIR:C70631 RefSeq:NP_214943.1
RefSeq:NP_334853.1 RefSeq:YP_006513755.1 PDB:3E3U PDBsum:3E3U
ProteinModelPortal:P96275 SMR:P96275 PRIDE:P96275
EnsemblBacteria:EBMYCT00000003426 EnsemblBacteria:EBMYCT00000072922
GeneID:13318296 GeneID:886366 GeneID:923753 KEGG:mtc:MT0444
KEGG:mtu:Rv0429c KEGG:mtv:RVBD_0429c PATRIC:18122688
TubercuList:Rv0429c OMA:LIGRWKR BindingDB:P96275 ChEMBL:CHEMBL5765
EvolutionaryTrace:P96275 Uniprot:P96275
Length = 197
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 38/123 (30%), Positives = 66/123 (53%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG--EGEEIVLVNPRVNKYS-NKMIPY- 56
M+D M +G+GL+A Q+G +++L V++ +R V++NP + + +P
Sbjct: 40 MYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDP 99
Query: 57 ---EEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF 113
+EGCLS PG R + ++ D +G+ S+ + L AR+ QHE HL G L+
Sbjct: 100 DTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYL 159
Query: 114 ERM 116
+R+
Sbjct: 160 DRL 162
>TIGR_CMR|ECH_0073 [details] [associations]
symbol:ECH_0073 "peptide deformylase" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 RefSeq:YP_506903.1 PDB:3OCA
PDB:3U04 PDBsum:3OCA PDBsum:3U04 ProteinModelPortal:Q2GI30
STRING:Q2GI30 GeneID:3927935 KEGG:ech:ECH_0073 PATRIC:20575709
OMA:AEWHELE ProtClustDB:CLSK749063
BioCyc:ECHA205920:GJNR-73-MONOMER EvolutionaryTrace:Q2GI30
Uniprot:Q2GI30
Length = 188
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 29/98 (29%), Positives = 49/98 (50%)
Query: 36 GEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDL 95
G ++NP++ S + + +EGCLS PG + RP+ + + D NG +
Sbjct: 87 GGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDYIVRPQRIAVQYLDYNGNECIIKAQGW 146
Query: 96 PARVFQHEFDHLQGILFFERMTDDVLDSIREQLEALEK 133
AR QHE DHL G +F + ++ D E+++ E+
Sbjct: 147 LARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVKKKER 184
>TIGR_CMR|CBU_0993 [details] [associations]
symbol:CBU_0993 "peptide deformylase" species:227377
"Coxiella burnetii RSA 493" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE016828 GenomeReviews:AE016828_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 RefSeq:NP_820000.1
ProteinModelPortal:Q83CV9 PRIDE:Q83CV9 GeneID:1208889
KEGG:cbu:CBU_0993 PATRIC:17930707 OMA:WATCAQH ProtClustDB:PRK00150
BioCyc:CBUR227377:GJ7S-984-MONOMER Uniprot:Q83CV9
Length = 170
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 40/140 (28%), Positives = 68/140 (48%)
Query: 1 MFDVMYK-TDGIGLSAPQVGI----NVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIP 55
MF+ Y T+ L+A Q+ + ++ ++ F+P + + + LVN + + S +
Sbjct: 33 MFETHYAATNCAALAATQLDMENPKHITVIDFSP----NKDQPLCLVNAEIIERSGEHTE 88
Query: 56 YEEGCLSFPG-IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EEGC+S G V R +K+ ARD G A+ QHE DHL GI+F +
Sbjct: 89 -EEGCMSVGGGTFEKVTRAAKIKVRARDRYGKPVEFEADGFMAKCIQHELDHLNGIIFLD 147
Query: 115 RMTDDVLDSIREQLEALEKK 134
R++ I ++L L ++
Sbjct: 148 RLSTLKRGRIDKRLGKLRRQ 167
>TIGR_CMR|APH_1012 [details] [associations]
symbol:APH_1012 "putative polypeptide deformylase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000235 GenomeReviews:CP000235_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:ALANDMM
ProtClustDB:CLSK749347 RefSeq:YP_505573.1 STRING:Q2GJ78
GeneID:3930427 KEGG:aph:APH_1012 PATRIC:20950760
BioCyc:APHA212042:GHPM-1020-MONOMER Uniprot:Q2GJ78
Length = 197
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 38/136 (27%), Positives = 62/136 (45%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV-------FNPV-------GERGEG-EEIVLVNPR 45
M + + D +GLSA Q+G +++ V FN G +V +NP+
Sbjct: 36 MIKIAERGDTVGLSAVQLGYPIRVFVIDMFSGLFNITEDLKVISGHHSHNTRSLVCINPQ 95
Query: 46 VNKYSNKMIPYEEGCLSFPGIH-ADVERPESVKIDARDINGARFSVSLSDLPARVFQHEF 104
+ +S + + EGCLS ++RP +V + D+ G + + AR QHE
Sbjct: 96 IVSFSGETVTLFEGCLSVKSYGMVGIQRPGNVDLKYTDLAGNVCVIRTFNWLARCVQHEM 155
Query: 105 DHLQGILFFERMTDDV 120
DHL G+L M D++
Sbjct: 156 DHLNGVLL-ANMLDNI 170
>TIGR_CMR|ECH_0939 [details] [associations]
symbol:ECH_0939 "putative polypeptide deformylase"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006464
"cellular protein modification process" evidence=ISS] [GO:0042586
"peptide deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
HOGENOM:HOG000243509 RefSeq:YP_507728.1 ProteinModelPortal:Q2GFQ5
STRING:Q2GFQ5 GeneID:3927713 KEGG:ech:ECH_0939 PATRIC:20577264
OMA:ALANDMM ProtClustDB:CLSK749347
BioCyc:ECHA205920:GJNR-942-MONOMER Uniprot:Q2GFQ5
Length = 194
Score = 111 (44.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 36/136 (26%), Positives = 61/136 (44%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV--------------GERG-EGEEIVLVNPR 45
M VM + +GLSA Q+G + ++ + N G G+ ++ +NP
Sbjct: 36 MMKVMEHSKTVGLSAVQLGNHSRMFIINMFSGLFDIAQDIKVLSGHHSLHGKNMICINPE 95
Query: 46 VNKYSNKMIPYEEGCLSFPGIHA-DVERPESVKIDARDINGARFSVSLSDLPARVFQHEF 104
V +S + + EGC S ++ RP+ + + D+ G V + +R QHE
Sbjct: 96 VLSFSAETVDLFEGCSSAKSYGLINITRPKHMDLRYTDLLGNECIVRVYGWLSRCIQHEL 155
Query: 105 DHLQGILFFERMTDDV 120
DHL GIL + D++
Sbjct: 156 DHLNGILL-ANVVDNI 170
>TIGR_CMR|CBU_1879 [details] [associations]
symbol:CBU_1879 "polypeptide deformylase, putative"
species:227377 "Coxiella burnetii RSA 493" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0008463
"formylmethionine deformylase activity" evidence=ISS]
HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005506 GO:GO:0006412 EMBL:AE016828
GenomeReviews:AE016828_GR eggNOG:COG0242 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 RefSeq:NP_820856.1 ProteinModelPortal:Q83AK6
GeneID:1209792 KEGG:cbu:CBU_1879 PATRIC:17932489
HOGENOM:HOG000026809 OMA:REYHREY ProtClustDB:CLSK915093
BioCyc:CBUR227377:GJ7S-1855-MONOMER Uniprot:Q83AK6
Length = 209
Score = 107 (42.7 bits), Expect = 0.00010, P = 0.00010
Identities = 40/142 (28%), Positives = 69/142 (48%)
Query: 4 VMYKT-DG-IGLSAPQVGINVQLMV-----FNPVGERGEGEEIVLVNPRVNKYSNKMIPY 56
+ YK+ G G + PQVG++ ++++ F+ E +LVNP S+K
Sbjct: 38 IFYKSFQGKAGFAVPQVGLSERIILVEQHLFDTTMAEETDEPTILVNPSWRPISDKKEWD 97
Query: 57 EEGCLSFPGIHADVERPESVKIDARDINGARFSVSL------SDLPARVFQHEFDHLQGI 110
EGCLS PG VER V++ A + ++S + + ++QHE DHL+G
Sbjct: 98 IEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALSKIKREYHREYSSVLWQHEIDHLEGK 157
Query: 111 LFFER----MTDDVLDSIREQL 128
++ ++ + + S R+QL
Sbjct: 158 IYVDKAKLLLNEKDFYSFRQQL 179
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.137 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 162 162 0.00079 107 3 11 22 0.40 32
30 0.44 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 42
No. of states in DFA: 536 (57 KB)
Total size of DFA: 128 KB (2083 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.11u 0.11s 17.22t Elapsed: 00:00:00
Total cpu time: 17.12u 0.11s 17.23t Elapsed: 00:00:00
Start: Fri May 10 20:09:09 2013 End: Fri May 10 20:09:09 2013