Query 031280
Match_columns 162
No_of_seqs 110 out of 1130
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 11:52:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0242 Def N-formylmethionyl- 100.0 2.3E-53 4.9E-58 337.5 10.1 131 1-131 35-166 (168)
2 PRK14597 peptide deformylase; 100.0 6.3E-52 1.4E-56 328.8 13.4 131 1-136 32-162 (166)
3 PRK12846 peptide deformylase; 100.0 1.3E-51 2.9E-56 326.5 13.0 128 1-130 36-163 (165)
4 PRK14598 peptide deformylase; 100.0 2.6E-51 5.7E-56 330.6 13.3 133 1-134 34-168 (187)
5 PRK00150 def peptide deformyla 100.0 7.6E-51 1.6E-55 322.0 12.9 128 1-130 35-163 (165)
6 TIGR00079 pept_deformyl peptid 100.0 7E-51 1.5E-55 321.3 12.5 127 1-128 33-159 (161)
7 PRK14595 peptide deformylase; 100.0 2.7E-50 5.9E-55 318.4 11.8 118 1-122 35-152 (162)
8 PF01327 Pep_deformylase: Poly 100.0 3.3E-50 7.2E-55 315.2 10.2 121 1-121 34-156 (156)
9 PRK14596 peptide deformylase; 100.0 1.3E-49 2.8E-54 323.5 13.7 136 1-137 34-187 (199)
10 cd00487 Pep_deformylase Polype 100.0 2.1E-48 4.6E-53 300.8 11.5 112 1-112 30-141 (141)
11 PRK09218 peptide deformylase; 100.0 1.3E-45 2.9E-50 284.4 9.9 105 1-112 30-136 (136)
12 KOG3137 Peptide deformylase [T 100.0 1.4E-42 3.1E-47 284.2 9.2 140 1-140 113-266 (267)
13 COG4740 Predicted metalloprote 98.2 1.2E-06 2.6E-11 68.9 2.7 71 37-109 74-159 (176)
14 smart00666 PB1 PB1 domain. Pho 48.4 19 0.0004 24.2 2.5 30 74-103 39-68 (81)
15 PF13670 PepSY_2: Peptidase pr 40.0 41 0.00088 23.0 3.2 31 73-103 53-83 (83)
16 PF11730 DUF3297: Protein of u 39.4 31 0.00066 24.0 2.4 38 51-95 29-66 (71)
17 cd06396 PB1_NBR1 The PB1 domai 34.0 47 0.001 23.6 2.8 22 75-96 39-60 (81)
18 smart00435 TOPEUc DNA Topoisom 33.5 99 0.0022 28.1 5.4 71 58-128 142-215 (391)
19 cd06407 PB1_NLP A PB1 domain i 31.9 52 0.0011 23.0 2.7 27 74-100 39-65 (82)
20 PF04986 Y2_Tnp: Putative tran 31.6 63 0.0014 25.7 3.5 45 58-104 116-163 (183)
21 cd06401 PB1_TFG The PB1 domain 30.5 63 0.0014 23.0 2.9 28 74-101 42-69 (81)
22 cd06398 PB1_Joka2 The PB1 doma 27.5 75 0.0016 22.7 3.0 31 72-102 42-72 (91)
23 cd05992 PB1 The PB1 domain is 27.0 66 0.0014 21.2 2.5 29 74-102 39-67 (81)
24 cd06409 PB1_MUG70 The MUG70 pr 26.4 1E+02 0.0022 22.1 3.4 30 73-102 41-70 (86)
25 cd00659 Topo_IB_C DNA topoisom 25.7 3E+02 0.0065 22.7 6.6 69 59-128 70-145 (218)
26 cd06402 PB1_p62 The PB1 domain 24.1 86 0.0019 22.5 2.7 28 74-101 46-73 (87)
27 PF00564 PB1: PB1 domain; Int 23.6 59 0.0013 21.7 1.7 30 73-102 39-68 (84)
28 COG2941 CAT5 Ubiquinone biosyn 23.4 34 0.00074 28.3 0.6 13 96-108 76-88 (204)
29 cd03074 PDI_b'_Calsequestrin_C 23.3 33 0.00072 26.1 0.5 20 6-31 73-92 (120)
30 cd06404 PB1_aPKC PB1 domain is 21.0 1.1E+02 0.0025 21.8 2.8 37 56-92 15-57 (83)
31 PF14657 Integrase_AP2: AP2-li 20.7 1.6E+02 0.0034 17.9 3.1 22 75-96 3-25 (46)
32 PF03900 Porphobil_deamC: Porp 20.7 1.9E+02 0.0041 19.3 3.8 36 58-94 16-56 (74)
No 1
>COG0242 Def N-formylmethionyl-tRNA deformylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-53 Score=337.50 Aligned_cols=131 Identities=37% Similarity=0.707 Sum_probs=122.4
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCC-CCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-EGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKID 79 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~-~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V~ 79 (162)
|++|||+++||||||||||+++|+||++..++.. ...+.+||||+|++.|.+....+|||||+||+++.|+||.+|+|+
T Consensus 35 M~etm~~~~GVGLAApQIGi~kri~vi~~~~~~~~~~~~~vlINP~I~~~~~~~~~~~EGCLSvP~~~~~V~R~~~I~V~ 114 (168)
T COG0242 35 MLETMYAAEGVGLAAPQIGISKRIFVIDVEEDGRPKEPPLVLINPEIISKSEETLTGEEGCLSVPGVRGEVERPERITVK 114 (168)
T ss_pred HHHHHHhCCCeeeeehhcCceeeEEEEEccCccCcCcCceEEECCEEeecCCcccccCcceEeecCceeeeecccEEEEE
Confidence 8999999999999999999999999999976532 345689999999999888888999999999999999999999999
Q ss_pred EEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHHH
Q 031280 80 ARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEAL 131 (162)
Q Consensus 80 y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~~ 131 (162)
|+|.+|++++++++||+|||||||+|||||+||+||+++..++.+.++++++
T Consensus 115 ~~D~~G~~~~~~a~G~lA~~iQHEiDHLnGvlf~D~l~~~k~~~~~~~~~~~ 166 (168)
T COG0242 115 YLDRNGKPQELEAEGLLARCIQHEIDHLNGVLFIDRLSPLKRDRLKKKLKKL 166 (168)
T ss_pred EEcCCCCEEEEEEcCceeEEeEeeccccCcEEeeeecChhhhhhHHHHHHHh
Confidence 9999999999999999999999999999999999999998888888888764
No 2
>PRK14597 peptide deformylase; Provisional
Probab=100.00 E-value=6.3e-52 Score=328.83 Aligned_cols=131 Identities=39% Similarity=0.666 Sum_probs=120.8
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCCCCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V~y 80 (162)
|++||++++||||||||||+++|+||++.. ..+.+||||+|++.|+++...+|||||+||+++.|+||.+|+|+|
T Consensus 32 M~~tm~~~~GvGLAApQIGv~~ri~vi~~~-----~~~~v~INP~I~~~s~~~~~~~EGCLS~Pg~~~~V~R~~~I~v~~ 106 (166)
T PRK14597 32 MIETMYHYDGVGLAAPQVGISLRFFVMDDG-----SGPKVVINPEIIEKSEEKEIAEEGCLSFPEIFEDVERSKWVKVRY 106 (166)
T ss_pred HHHHHHhCCCcEEehhhcCCceeEEEEEcC-----CCceEEECCeeccCCCCcccCCCCCCccCCCceEecCCCEEEEEE
Confidence 899999999999999999999999999863 136899999999999987778999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHHHHHhhH
Q 031280 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEALEKKYE 136 (162)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~~~~~~~ 136 (162)
+|++|++++.+++||+|||||||+|||+|+||+||+++..+..+.++++++.+..+
T Consensus 107 ~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~lfiDrl~~~~~~~~~~~~~~~~~~~~ 162 (166)
T PRK14597 107 QDERGEVVEELLEGYAARIFQHEYDHLNGVLFIDRLPPAKRLLLRKKLMDIMRTVK 162 (166)
T ss_pred ECCCCCEEEEEEeCHHHHHHHHHhHhhCCEeehhccChhHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999888888888887655443
No 3
>PRK12846 peptide deformylase; Reviewed
Probab=100.00 E-value=1.3e-51 Score=326.47 Aligned_cols=128 Identities=36% Similarity=0.660 Sum_probs=118.0
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCCCCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V~y 80 (162)
|++||++++|+||||||||+++|+||++..+. ...+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 36 M~~tm~~~~gvGLAApQVG~~~ri~vi~~~~~--~~~~~vliNP~I~~~s~~~~~~~EGCLS~Pg~~~~V~R~~~I~v~~ 113 (165)
T PRK12846 36 MFETMRAADGVGLAAPQIGVSLRVVVIDLGDD--RVPPTVLINPEITELSPEEEVGWEGCLSVPGLRGEVERPARVRVRA 113 (165)
T ss_pred HHHHHHhCCCcEEeccccCCceeEEEEEccCC--CCcceEEECCEEEcCCCCEeccCCCCCccCCcceeecCcceEEEEE
Confidence 89999999999999999999999999997543 1346899999999999888778999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHH
Q 031280 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEA 130 (162)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~ 130 (162)
+|++|++++.+++||+|||||||+|||+|+||+||+++..+..+.+++++
T Consensus 114 ~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~Drl~~~~~~~~~~~~~~ 163 (165)
T PRK12846 114 QDRDGKPIEIEAEGFLARVLQHEIDHLDGILYTDRLSRLKRERALKKVEK 163 (165)
T ss_pred ECCCCCEEEEEEeCHHHhHHhHHhHhcCCEeehhhCCHHHhHHHHHHhhc
Confidence 99999999999999999999999999999999999999888777666654
No 4
>PRK14598 peptide deformylase; Provisional
Probab=100.00 E-value=2.6e-51 Score=330.65 Aligned_cols=133 Identities=38% Similarity=0.665 Sum_probs=120.1
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCC--CCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG--EGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKI 78 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~--~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V 78 (162)
|++||++++||||||||||+++|+||++...... ...+.+||||+|++.|+. ...+|||||+||+++.|+||.+|+|
T Consensus 34 M~~tm~~~~GvGLAApQVG~~~Ri~vid~~~~~~~~~~~~~v~INP~I~~~s~~-~~~~EGCLSvPg~~~~V~R~~~I~v 112 (187)
T PRK14598 34 MFESMYNASGIGLAAPQVGRSLRLLVVDVSCMKEYEDEKPMVVINPHILAVKGY-NAMEEGCLSVPGVQGDVVRPSSITL 112 (187)
T ss_pred HHHHHHhCCCeEEehhhcCCceeEEEEEcccccccccccceEEECCeeccCCCc-ccCCCCCccCCCcceEEeccCEEEE
Confidence 8999999999999999999999999999753321 124689999999998875 4589999999999999999999999
Q ss_pred EEEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHHHHHh
Q 031280 79 DARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEALEKK 134 (162)
Q Consensus 79 ~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~~~~~ 134 (162)
+|+|++|++++.+++||+|||||||+|||+|+||+||+++..+..+.+++++..+.
T Consensus 113 ~~~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~LfiDrl~~~~~~~~~~~~~~~~~~ 168 (187)
T PRK14598 113 KYRDEHFEERTEEFSGMMARVLQHEIDHLDGTLFVDRMQKRDRRKIQKELDAIAAG 168 (187)
T ss_pred EEECCCCCEEEEEEecHhhhHHhHhhhccCCEEEEEecChhhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999988888776544
No 5
>PRK00150 def peptide deformylase; Reviewed
Probab=100.00 E-value=7.6e-51 Score=322.04 Aligned_cols=128 Identities=41% Similarity=0.761 Sum_probs=116.0
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCCCCceeEEEcceEEeeCCcee-ecccccCCcCCCceeeccCCeEEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMI-PYEEGCLSFPGIHADVERPESVKID 79 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~Iv~~s~~~~-~~~EgCLS~pg~~~~V~R~~~I~V~ 79 (162)
|++||++++|+||||||||+++|+||++..+.. ..+.+||||+|++.|++.. ..+|||||+||+++.|+||.+|+|+
T Consensus 35 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~--~~~~v~iNP~I~~~s~~~~~~~~EGCLS~pg~~~~V~R~~~I~v~ 112 (165)
T PRK00150 35 MFETMYAAPGVGLAAPQVGVSKRIIVIDVEDKE--GEPLVLINPEIISESSEEYLTYEEGCLSVPGVYGEVPRPERVTVK 112 (165)
T ss_pred HHHHHHhCCCcEEEhhhcCcceeEEEEEccCCC--CceeEEECCEEecCCCCeeccCCCCCCccCCeeeEecCcceeEEE
Confidence 899999999999999999999999999974322 2478999999998886654 4899999999999999999999999
Q ss_pred EEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHH
Q 031280 80 ARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEA 130 (162)
Q Consensus 80 y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~ 130 (162)
|+|++|++++++++||+|||||||+|||+|+||+||+++..+..+.+++++
T Consensus 113 ~~d~~G~~~~~~~~g~~Ar~~QHE~DHL~G~l~~Drl~~~~~~~~~~~~~~ 163 (165)
T PRK00150 113 ALDRDGKPFELEADGLLARCIQHEIDHLNGVLFIDRLSPLKRFRIKKKLKK 163 (165)
T ss_pred EECCCCCEEEEEEeCHhhhHHhHHhHhhCCEEeeeecChhHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999887776666654
No 6
>TIGR00079 pept_deformyl peptide deformylase. Peptide deformylase (EC 3.5.1.88), also called polypeptide deformylase, is a metalloenzyme that uses water to release formate from the N-terminal formyl-L-methionine of bacterial and chloroplast peptides. This enzyme should not be confused with formylmethionine deformylase (EC 3.5.1.31) which is active on free N-formyl methionine and has been reported from rat intestine.
Probab=100.00 E-value=7e-51 Score=321.28 Aligned_cols=127 Identities=41% Similarity=0.696 Sum_probs=115.8
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCCCCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V~y 80 (162)
|++||++++|+||||||||+++||||++..+.. ...+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 33 M~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~-~~~~~v~iNP~I~~~s~~~~~~~EGCLS~Pg~~~~V~R~~~I~v~y 111 (161)
T TIGR00079 33 MIETMYAEEGIGLAAPQVGIWKRMFVIHLEDDD-KEDPLVLINPKIIETSGEKSGLEEGCLSVPGVYGYVPRPEKVKIRG 111 (161)
T ss_pred HHHHHHhCCCeEEehhhcCcceeEEEEEccCCc-CccceEEECCeeccCCCcEeccCcCCCccCCccceecChhheEEEE
Confidence 899999999999999999999999999975432 1236899999999999887777899999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHH
Q 031280 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQL 128 (162)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~ 128 (162)
+|++|++++.+++||+|||||||+|||+|+||+||+++..+..+.+++
T Consensus 112 ~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~l~~D~l~~~~~~~~~~~~ 159 (161)
T TIGR00079 112 FDRFGKPFTIEASGLLARCIQHEMDHLNGVLFVDRISPLKPEKEKKEL 159 (161)
T ss_pred ECCCCCEEEEEEeCHHHhHHhHHhHhcCCEeeeeecChhhhhHHHHhh
Confidence 999999999999999999999999999999999999988777666554
No 7
>PRK14595 peptide deformylase; Provisional
Probab=100.00 E-value=2.7e-50 Score=318.42 Aligned_cols=118 Identities=30% Similarity=0.500 Sum_probs=110.5
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCCCCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V~y 80 (162)
|++|||+++|+||||||||+++||||++... ..+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 35 M~~tm~~~~gvGLAApQVG~~~ri~vi~~~~----~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~v~~ 110 (162)
T PRK14595 35 LEDTMYAQEAAALCAPQIGQSLQVAIIDMEM----EGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVES 110 (162)
T ss_pred HHHHHhhCCCcEEechhcCCceeEEEEEccC----CCceEEECCeeecCCCCEeeCCcCCccCCCcceEecCCCEEEEEE
Confidence 8999999999999999999999999998742 236899999999999998778999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHH
Q 031280 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLD 122 (162)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~ 122 (162)
+|++|++++++++||+|||+|||+|||+|+||+||+++...+
T Consensus 111 ~D~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~Drl~~~~~~ 152 (162)
T PRK14595 111 YDVNGNKVELTAYDDVARMILHIIDQMNGIPFTERADRILTD 152 (162)
T ss_pred ECCCCCEEEEEEeCHHHHHHHHHhHccCCEEEeeecCccccc
Confidence 999999999999999999999999999999999999876544
No 8
>PF01327 Pep_deformylase: Polypeptide deformylase; InterPro: IPR023635 Peptide deformylase (PDF) is an essential metalloenzyme required for the removal of the formyl group at the N terminus of nascent polypeptide chains in eubacteria: 3.5.1.88 from EC []. The enzyme acts as a monomer and binds a single zinc ion, catalysing the reaction:: N-formyl-L-methionine + H2O = formate + methionyl peptide Catalytic efficiency strongly depends on the identity of the bound metal []. The structure of these enzymes is known [, ]. PDF, a member of the zinc metalloproteases family, comprises an active core domain of 147 residues and a C-terminal tail of 21 residue. The 3D fold of the catalytic core has been determined by X-ray crystallography and NMR. Overall, the structure contains a series of anti-parallel beta- strands that surround two perpendicular alpha-helices. The C-terminal helix contains the characteristic HEXXH motif of metalloenzymes, which is crucial for activity. The helical arrangement, and the way the histidine residues bind the zinc ion, is reminiscent of other metalloproteases, such as thermolysin or metzincins. However, the arrangement of secondary and tertiary structures of PDF, and the positioning of its third zinc ligand (a cysteine residue), are quite different. These discrepancies, together with notable biochemical differences, suggest that PDF constitutes a new class of zinc-metalloproteases. [].; PDB: 2OS1_A 2OS0_A 1LME_B 3QU1_A 1N5N_B 1S17_B 1LRY_A 1IX1_A 1WS1_A 1WS0_A ....
Probab=100.00 E-value=3.3e-50 Score=315.17 Aligned_cols=121 Identities=40% Similarity=0.749 Sum_probs=108.5
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCCCCce--eEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE--IVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKI 78 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~--~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V 78 (162)
|++||++.+|+||||||||+++|+||++.......... .+||||+|+..|+++...||||||+||+++.|+||.+|+|
T Consensus 34 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v 113 (156)
T PF01327_consen 34 MFETMYAANGVGLAAPQIGIPKRIFVIDIPDEKPEPSEPETVLINPKITSSSEETVEDWEGCLSVPGIRGKVERPKKITV 113 (156)
T ss_dssp HHHHHHHTTBSEEEGGGGTS-BSEEEEEEETTSSSESEEEEEEEEEEEEESSEEEEEEEEEETTSTTEEEEEEEESEEEE
T ss_pred HHHHHHHhccceEehhhcCchheEEEEecCcccccCCccceEEECCEEecccCCcCccccCCCccCCccccCCCcceEEE
Confidence 78999999999999999999999999998754432211 6999999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHH
Q 031280 79 DARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (162)
Q Consensus 79 ~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~ 121 (162)
+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+|
T Consensus 114 ~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~r 156 (156)
T PF01327_consen 114 RYYDLDGKPIELEAEGFLARCIQHEIDHLNGILFIDRLSPKKR 156 (156)
T ss_dssp EEEETTS-EEEEEEEHHHHHHHHHHHHHHTT--GGGGSSHHHH
T ss_pred EEECCCCeEEEEEEccccEEeeeehhhhhCCEehhhccCccCC
Confidence 9999999999999999999999999999999999999999865
No 9
>PRK14596 peptide deformylase; Provisional
Probab=100.00 E-value=1.3e-49 Score=323.47 Aligned_cols=136 Identities=35% Similarity=0.678 Sum_probs=114.6
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEec-CCC-CCC-----------CceeEEEcceEEeeCCceeecccccCCcCCCc
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNP-VGE-RGE-----------GEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIH 67 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~-~~~-~~~-----------~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~ 67 (162)
|++|||+++||||||||||+++||||++. .+. ... ..+.+||||+|+..|++. ..+|||||+||++
T Consensus 34 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~-~~~EGCLSvPg~~ 112 (199)
T PRK14596 34 MLETMFEARGVGLAAPQIGLSVRLFVAVEYADDEEEEEGEEAPLRSRVLREYVMVNPVITYRKGDQ-SGQEGCLSIPGLY 112 (199)
T ss_pred HHHHHHhCCCcEEehhhcCCceeEEEEEeccCccccccccccccccccccceEEECCEEecCCCcc-cCCcCcccccCcc
Confidence 89999999999999999999999999973 211 100 025799999999877764 6899999999998
Q ss_pred e-eeccCCeEEEEEEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHH----HHHHHHhhHh
Q 031280 68 A-DVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQ----LEALEKKYED 137 (162)
Q Consensus 68 ~-~V~R~~~I~V~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~----~~~~~~~~~~ 137 (162)
+ .|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++..+..+.++ |.++.++++.
T Consensus 113 ~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (199)
T PRK14596 113 EEGVPRARQVRVEYQDLDGQKRTLEAEGYLARVFQHEIDHLDGILFFDRLPKAKREAFLEAHRRELAEMQRQAKA 187 (199)
T ss_pred ceeeeccCEEEEEEECCCCCEEEEEEeChhhhhhhhhhhhcCCEeehhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 79999999999999999999999999999999999999999999999998877766544 4444444443
No 10
>cd00487 Pep_deformylase Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II) as the catalytic metal ion, which can be replaced with a nickel or cobalt ion with no loss of activity. There are two types of peptide deformylases, types I and II, which differ in structure only in the outer surface of the domain. Because these enzymes are essential only in prokaryotes (although eukaryotic gene sequences have been found), they are a target for a new class of antibacterial agents.
Probab=100.00 E-value=2.1e-48 Score=300.84 Aligned_cols=112 Identities=40% Similarity=0.726 Sum_probs=105.0
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCCCCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V~y 80 (162)
|++||++++|+||||||||+++|+||++..+......+.+||||+|++.|+++...+|||||+||+++.|+||.+|+|+|
T Consensus 30 m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~~ 109 (141)
T cd00487 30 MFETMYAAPGVGLAAPQIGVSKRIFVIDVPDEENKEPPLVLINPEIIESSGETEYGEEGCLSVPGYRGEVERPKKVTVRY 109 (141)
T ss_pred HHHHHHhCCCcEEEhhhcCCceeEEEEEcccccccccceEEECCeEeccCCCEeeCCcCCcCcCCcceEecCcCEEEEEE
Confidence 89999999999999999999999999998654233457899999999999998777999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhhhhhhCCcee
Q 031280 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILF 112 (162)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~ 112 (162)
+|++|++++.+++||+|||+|||+|||+|+||
T Consensus 110 ~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~ 141 (141)
T cd00487 110 LDEDGNPIELEAEGFLARCIQHEIDHLNGILF 141 (141)
T ss_pred ECCCCCEEEEEEeCHhhhhHhHHhHhhCCEEC
Confidence 99999999999999999999999999999997
No 11
>PRK09218 peptide deformylase; Validated
Probab=100.00 E-value=1.3e-45 Score=284.42 Aligned_cols=105 Identities=28% Similarity=0.502 Sum_probs=97.5
Q ss_pred CHHhhhcC--CCeeEeccccCccccEEEEecCCCCCCCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEE
Q 031280 1 MFDVMYKT--DGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKI 78 (162)
Q Consensus 1 m~~tM~~~--~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V 78 (162)
|++||+++ +|+||||||||+++|+||++... .+.+||||+|++.|++. ..+|||||+||+. .|+||.+|+|
T Consensus 30 M~~tm~~~~~~gvGLAApQIGv~~ri~vi~~~~-----~~~vlINP~I~~~s~~~-~~~EGCLS~P~~~-~V~R~~~I~v 102 (136)
T PRK09218 30 LQDTLLANRDECVGMAANMIGVQKRIIIFSLGF-----VPVVMFNPVIVSKSGPY-ETEEGCLSLTGER-PTKRYEEITV 102 (136)
T ss_pred HHHHHHhcCCCCEEEEHHHCCcCceEEEEECCC-----CcEEEECCEEecCCCce-eCCccceecCCCc-cccCcceeEE
Confidence 89999998 58999999999999999998732 36899999999988775 5789999999997 8999999999
Q ss_pred EEEcCCCCEEEEEEecchhhhHHhhhhhhCCcee
Q 031280 79 DARDINGARFSVSLSDLPARVFQHEFDHLQGILF 112 (162)
Q Consensus 79 ~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~ 112 (162)
+|+|++|++++.+++||+|||||||+|||+|+|+
T Consensus 103 ~~~d~~G~~~~~~~~g~~Ar~iQHEiDHL~G~L~ 136 (136)
T PRK09218 103 KYLDRNWREQTQTFTGFTAQIIQHELDHCEGILI 136 (136)
T ss_pred EEECCCCCEEEEEEeChhhhhhhhHhhccCCEEC
Confidence 9999999999999999999999999999999985
No 12
>KOG3137 consensus Peptide deformylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-42 Score=284.21 Aligned_cols=140 Identities=66% Similarity=1.123 Sum_probs=130.7
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCC-------C-------CCCceeEEEcceEEeeCCceeecccccCCcCCC
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-------R-------GEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGI 66 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~-------~-------~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~ 66 (162)
||++|+..+||||||||||+|.|++|+++..+ + .+.+..||+||++-..|+..+.+.|||||+||+
T Consensus 113 m~~VMr~~~gVGLsAPQvGvp~q~~vle~~~alcrecP~~~ra~rqmepf~l~V~VNP~lk~~s~klv~F~EGClSv~Gf 192 (267)
T KOG3137|consen 113 MFDVMRKTDGVGLSAPQVGVPVQLMVLEPAGALCRECPEPGRAERQMEPFKLIVLVNPKLKKYSDKLVPFDEGCLSVPGF 192 (267)
T ss_pred HHHHHHhCCCccccCcccCCceEEEEecChHHHHhcCCChhhhHhhccCCCeEEEecchHhhhcccccccccccccccch
Confidence 89999999999999999999999999987641 1 234578999999999999999999999999999
Q ss_pred ceeeccCCeEEEEEEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHHHHHhhHhhcC
Q 031280 67 HADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEALEKKYEDKTG 140 (162)
Q Consensus 67 ~~~V~R~~~I~V~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~~~~~~~~~~~ 140 (162)
++.|+||..|.|.++|.+|+.+++.++||.||+||||+|||+|.||+|+|++.+...+...+..++++++.+.+
T Consensus 193 ~A~V~R~q~V~i~g~D~~Ger~~~~aSgw~ARI~QHE~DHL~G~Lf~DkM~~rtf~~V~~~~~~l~~~~~~~~~ 266 (267)
T KOG3137|consen 193 YAEVVRPQSVKIDGRDITGERFSISASGWPARIFQHEYDHLEGVLFFDKMTDRTFDSVREELEALEKKYEEKTG 266 (267)
T ss_pred hhcccccceEEEeeecCCCCEEEEecccchHHHHHhHhhhhcceeeeeecccHhHhHHHHhhhhhhhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887665
No 13
>COG4740 Predicted metalloprotease [General function prediction only]
Probab=98.16 E-value=1.2e-06 Score=68.92 Aligned_cols=71 Identities=23% Similarity=0.399 Sum_probs=56.2
Q ss_pred ceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEEEEE-------cCCC--------CEEEEEEecchhhhHH
Q 031280 37 EEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDAR-------DING--------ARFSVSLSDLPARVFQ 101 (162)
Q Consensus 37 ~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V~y~-------d~~G--------~~~~~~~~G~~Ar~~Q 101 (162)
..+.|+||+|++..+ ++...|.|-+-.. +..|.||.+|+|+.- |+-- ++-++.++|..|.-+.
T Consensus 74 ~~YLflNPeIi~~EG-t~~RlEKCG~r~e-Relv~RPyR~~vr~d~~l~a~vdPg~~~IRvreL~k~~lrl~G~pAy~~a 151 (176)
T COG4740 74 DLYLFLNPEIIRAEG-TLTRLEKCGRRRE-RELVKRPYRLEVRHDGGLIARVDPGRRRIRVRELDKGTLRLEGIPAYNLA 151 (176)
T ss_pred heeeeeChhheeccc-eEEehhhhcchHH-HHHhcCCeEEEEecCceEEEEECCccceEEEEecCCCeEEEecCccchhH
Confidence 358999999998655 5688999987654 468999999999864 3322 2345789999999999
Q ss_pred hhhhhhCC
Q 031280 102 HEFDHLQG 109 (162)
Q Consensus 102 HEiDHL~G 109 (162)
||+.||+|
T Consensus 152 HEleHLeg 159 (176)
T COG4740 152 HELEHLEG 159 (176)
T ss_pred HHHHHhhc
Confidence 99999998
No 14
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=48.41 E-value=19 Score=24.18 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCCEEEEEEecchhhhHHhh
Q 031280 74 ESVKIDARDINGARFSVSLSDLPARVFQHE 103 (162)
Q Consensus 74 ~~I~V~y~d~~G~~~~~~~~G~~Ar~~QHE 103 (162)
..++++|.|.+|..+++.-+.-+..++++-
T Consensus 39 ~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~ 68 (81)
T smart00666 39 QSFTLKYQDEDGDLVSLTSDEDLEEAIEEY 68 (81)
T ss_pred CCeEEEEECCCCCEEEecCHHHHHHHHHHH
Confidence 578999999999999998887777777653
No 15
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=40.03 E-value=41 Score=22.99 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCCCEEEEEEecchhhhHHhh
Q 031280 73 PESVKIDARDINGARFSVSLSDLPARVFQHE 103 (162)
Q Consensus 73 ~~~I~V~y~d~~G~~~~~~~~G~~Ar~~QHE 103 (162)
-...+|+..|.+|+.+++.++.-.-.+++.|
T Consensus 53 ~g~yev~~~~~dG~~~ev~vD~~tG~V~~~k 83 (83)
T PF13670_consen 53 DGCYEVEARDKDGKKVEVYVDPATGEVVKEK 83 (83)
T ss_pred CCEEEEEEEECCCCEEEEEEcCCCCeEeecC
Confidence 3357888999999999999998777766543
No 16
>PF11730 DUF3297: Protein of unknown function (DUF3297); InterPro: IPR021724 This family is expressed in Proteobacteria and Actinobacteria. The function is not known.
Probab=39.41 E-value=31 Score=24.01 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=27.2
Q ss_pred CceeecccccCCcCCCceeeccCCeEEEEEEcCCCCEEEEEEecc
Q 031280 51 NKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDL 95 (162)
Q Consensus 51 ~~~~~~~EgCLS~pg~~~~V~R~~~I~V~y~d~~G~~~~~~~~G~ 95 (162)
.+....+|-|.|--.++..+. .+.|..|++..+++.|-
T Consensus 29 ~Er~nVeEYciSEGWvrv~~g-------ka~DR~G~Pl~iklkG~ 66 (71)
T PF11730_consen 29 KERTNVEEYCISEGWVRVAAG-------KALDRRGNPLTIKLKGT 66 (71)
T ss_pred eEcccceeEeccCCEEEeecC-------cccccCCCeeEEEEcce
Confidence 344456799999765543332 45799999999999884
No 17
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=34.00 E-value=47 Score=23.59 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=19.2
Q ss_pred eEEEEEEcCCCCEEEEEEecch
Q 031280 75 SVKIDARDINGARFSVSLSDLP 96 (162)
Q Consensus 75 ~I~V~y~d~~G~~~~~~~~G~~ 96 (162)
.++++|.|.+|+++.++.+.-+
T Consensus 39 ~f~lKYlDde~e~v~lssd~eL 60 (81)
T cd06396 39 DIQIKYVDEENEEVSVNSQGEY 60 (81)
T ss_pred cceeEEEcCCCCEEEEEchhhH
Confidence 8999999999999999876543
No 18
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=33.49 E-value=99 Score=28.11 Aligned_cols=71 Identities=18% Similarity=0.268 Sum_probs=52.4
Q ss_pred cccCCcCCCceeeccCCeEEEEEEcCCCCEEEE--EEecchhhhHHhhhhh-hCCceeeecCCHHHHHHHHHHH
Q 031280 58 EGCLSFPGIHADVERPESVKIDARDINGARFSV--SLSDLPARVFQHEFDH-LQGILFFERMTDDVLDSIREQL 128 (162)
Q Consensus 58 EgCLS~pg~~~~V~R~~~I~V~y~d~~G~~~~~--~~~G~~Ar~~QHEiDH-L~Gil~~Drl~~~~~~~~~~~~ 128 (162)
=||.|+---...+..+..|+..|...+|..+.. ..+--+++.++-=.|. +-|--.+|++++...+...+++
T Consensus 142 ~Gl~TLR~eHV~l~~~~~v~fdF~GKdgir~~~~v~vd~~l~k~L~~~~~~k~pg~~LF~~l~s~~lN~yLke~ 215 (391)
T smart00435 142 VGCCSLRVEHVTLKPPNKVIFDFLGKDSIRYYNEVEVDKQVFKNLKIFMKPKKPGDDLFDRLNTSKLNKHLKEL 215 (391)
T ss_pred EeecccchhheEecCCCEEEEEEeCCCCcEEEEEEecCHHHHHHHHHHhcCCCChHHHHhhCCHHHHHHHHHHH
Confidence 388888876666766799999999999999854 4566777777766652 5566556889988877655544
No 19
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=31.89 E-value=52 Score=23.03 Aligned_cols=27 Identities=4% Similarity=-0.039 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCEEEEEEecchhhhH
Q 031280 74 ESVKIDARDINGARFSVSLSDLPARVF 100 (162)
Q Consensus 74 ~~I~V~y~d~~G~~~~~~~~G~~Ar~~ 100 (162)
..++++|.|.+|.++.++.+.-+.-|+
T Consensus 39 ~~f~LkY~Ddegd~v~ltsd~DL~eai 65 (82)
T cd06407 39 SAFDLKYLDDDEEWVLLTCDADLEECI 65 (82)
T ss_pred CeeEEEEECCCCCeEEeecHHHHHHHH
Confidence 579999999999999999877555444
No 20
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=31.62 E-value=63 Score=25.67 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=29.6
Q ss_pred cccCCcCCCceeeccCCeEEEEEEcCC-CCEEEE--EEecchhhhHHhhh
Q 031280 58 EGCLSFPGIHADVERPESVKIDARDIN-GARFSV--SLSDLPARVFQHEF 104 (162)
Q Consensus 58 EgCLS~pg~~~~V~R~~~I~V~y~d~~-G~~~~~--~~~G~~Ar~~QHEi 104 (162)
-+++|-.-+.. +. -..|+.+|.|.. ++...+ ....|.+|++||=.
T Consensus 116 R~~is~~Ri~~-~~-~~~V~f~y~d~~~~~~~~~~l~~~efi~r~l~Hvp 163 (183)
T PF04986_consen 116 RPAISNSRIVS-YD-DGTVTFRYKDHRTKKTKTLTLSAEEFIRRLLQHVP 163 (183)
T ss_pred hccccccceEE-ec-cceeEEEEEcCCCCcEEEEEechHHHHHHHHhhcC
Confidence 44555555532 22 678999999975 444444 45669999999944
No 21
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=30.47 E-value=63 Score=23.03 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCEEEEEEecchhhhHH
Q 031280 74 ESVKIDARDINGARFSVSLSDLPARVFQ 101 (162)
Q Consensus 74 ~~I~V~y~d~~G~~~~~~~~G~~Ar~~Q 101 (162)
..+.|+|.|.+|..++++-+.-++-.+|
T Consensus 42 ~~flIKYkD~dGDlVTIts~~dL~~A~~ 69 (81)
T cd06401 42 DDVLIKYKDEDGDLITIFDSSDLSFAIQ 69 (81)
T ss_pred ccEEEEEECCCCCEEEeccHHHHHHHHh
Confidence 6899999999999999987655444433
No 22
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=27.51 E-value=75 Score=22.75 Aligned_cols=31 Identities=10% Similarity=0.071 Sum_probs=25.9
Q ss_pred cCCeEEEEEEcCCCCEEEEEEecchhhhHHh
Q 031280 72 RPESVKIDARDINGARFSVSLSDLPARVFQH 102 (162)
Q Consensus 72 R~~~I~V~y~d~~G~~~~~~~~G~~Ar~~QH 102 (162)
+...+.++|.|.+|..+.++-+.-+.-|+|.
T Consensus 42 ~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~ 72 (91)
T cd06398 42 PDADLSLTYTDEDGDVVTLVDDNDLTDAIQY 72 (91)
T ss_pred CCCcEEEEEECCCCCEEEEccHHHHHHHHHH
Confidence 3467889999999999999988877777764
No 23
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=27.04 E-value=66 Score=21.24 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCCEEEEEEecchhhhHHh
Q 031280 74 ESVKIDARDINGARFSVSLSDLPARVFQH 102 (162)
Q Consensus 74 ~~I~V~y~d~~G~~~~~~~~G~~Ar~~QH 102 (162)
..+.++|.|.+|..+.+.-+.-+.-++++
T Consensus 39 ~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~ 67 (81)
T cd05992 39 VSFKLKYPDEDGDLVTISSDEDLEEAIEE 67 (81)
T ss_pred CcEEEEeeCCCCCEEEeCCHHHHHHHHHH
Confidence 68899999999999999887666666655
No 24
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=26.44 E-value=1e+02 Score=22.06 Aligned_cols=30 Identities=7% Similarity=-0.075 Sum_probs=26.1
Q ss_pred CCeEEEEEEcCCCCEEEEEEecchhhhHHh
Q 031280 73 PESVKIDARDINGARFSVSLSDLPARVFQH 102 (162)
Q Consensus 73 ~~~I~V~y~d~~G~~~~~~~~G~~Ar~~QH 102 (162)
...+.+.|.|-+|..+.++.+.-+.-|+.|
T Consensus 41 ~~~~~L~YlDDEgD~VllT~D~DL~e~v~i 70 (86)
T cd06409 41 THLYALSYVDDEGDIVLITSDSDLVAAVLV 70 (86)
T ss_pred CCcccEEEEcCCCCEEEEeccchHHHHHHH
Confidence 567899999999999999999977777765
No 25
>cd00659 Topo_IB_C DNA topoisomerase IB, C-terminal catalytic domain. Topoisomerase I promotes the relaxation of both positive and negative DNA superhelical tension by introducing a transient single-stranded break in duplex DNA. This function is vital for the processes of replication, transcription, and recombination. Unlike Topo IA enzymes, Topo IB enzymes do not require a single-stranded region of DNA or metal ions for their function. The type IB family of DNA topoisomerases includes eukaryotic nuclear topoisomerase I, topoisomerases of poxviruses and bacterial versions of Topo IB. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their C-terminal catalytic domain and the overall reaction mechanism with tyrosine recombinases. The C-terminal catalytic domain in topoisomerases is linked to a divergent N-terminal domain that shows no sequence or structure similarity to the N-terminal domains of tyrosine recombinases.
Probab=25.69 E-value=3e+02 Score=22.74 Aligned_cols=69 Identities=19% Similarity=0.337 Sum_probs=51.4
Q ss_pred ccCCcCCCceeeccCCeEEEEEEcCCCCEEEEEEec--chhhhHHhhhhhhCCc-eee----ecCCHHHHHHHHHHH
Q 031280 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSD--LPARVFQHEFDHLQGI-LFF----ERMTDDVLDSIREQL 128 (162)
Q Consensus 59 gCLS~pg~~~~V~R~~~I~V~y~d~~G~~~~~~~~G--~~Ar~~QHEiDHL~Gi-l~~----Drl~~~~~~~~~~~~ 128 (162)
||.++-.-...+ ++..|.++|...+|..+..+++. -++++++-=.|-+-|- ||. +.+++...+...+++
T Consensus 70 GltTLr~~Hv~~-~~~~i~f~F~GK~g~~~~~~v~d~~~l~~~l~~~~~k~pg~~LF~y~~~~~v~s~~vN~yl~e~ 145 (218)
T cd00659 70 GLCTLRKEHVTL-KPNVVRFDFLGKDSIRYENEVEVEPRLFKNLRKFLDKLPGDDLFQYLQVDRLNSSKLNAYLREF 145 (218)
T ss_pred eecccchhheeE-eCCEEEEEEECCCCcEEEEEECChHHHHHHHHHHHHcCCcHHhhccCCCCcCCHHHHHHHHHHH
Confidence 787777655555 46899999999999999999988 8888887666634554 442 667777777655554
No 26
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=24.10 E-value=86 Score=22.48 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCEEEEEEecchhhhHH
Q 031280 74 ESVKIDARDINGARFSVSLSDLPARVFQ 101 (162)
Q Consensus 74 ~~I~V~y~d~~G~~~~~~~~G~~Ar~~Q 101 (162)
..+++.|.|.+|.++++.-+.-+...++
T Consensus 46 ~~ftlky~DeeGDlvtIssdeEL~~A~~ 73 (87)
T cd06402 46 KNFQLFWKDEEGDLVAFSSDEELVMALG 73 (87)
T ss_pred CcEEEEEECCCCCEEeecCHHHHHHHHH
Confidence 5789999999999999987765544444
No 27
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=23.58 E-value=59 Score=21.65 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCCEEEEEEecchhhhHHh
Q 031280 73 PESVKIDARDINGARFSVSLSDLPARVFQH 102 (162)
Q Consensus 73 ~~~I~V~y~d~~G~~~~~~~~G~~Ar~~QH 102 (162)
...+.+.|.|.+|..+.+.-+.-+..+++.
T Consensus 39 ~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~ 68 (84)
T PF00564_consen 39 DEDFQLKYKDEDGDLVTISSDEDLQEAIEQ 68 (84)
T ss_dssp TSSEEEEEEETTSSEEEESSHHHHHHHHHH
T ss_pred CccEEEEeeCCCCCEEEeCCHHHHHHHHHH
Confidence 478999999999999888766655555443
No 28
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=23.37 E-value=34 Score=28.33 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=10.3
Q ss_pred hhhhHHhhhhhhC
Q 031280 96 PARVFQHEFDHLQ 108 (162)
Q Consensus 96 ~Ar~~QHEiDHL~ 108 (162)
+=-+.+||+|||+
T Consensus 76 l~em~d~E~~HL~ 88 (204)
T COG2941 76 LKEMADEEIDHLA 88 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 3456889999997
No 29
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=23.33 E-value=33 Score=26.11 Aligned_cols=20 Identities=50% Similarity=0.591 Sum_probs=14.7
Q ss_pred hcCCCeeEeccccCccccEEEEecCC
Q 031280 6 YKTDGIGLSAPQVGINVQLMVFNPVG 31 (162)
Q Consensus 6 ~~~~gvGLAApQIG~~~ri~vi~~~~ 31 (162)
...-++-|+.|||| |+|.++
T Consensus 73 ektF~IDl~~PqIG------VV~vtd 92 (120)
T cd03074 73 EKTFGIDLFRPQIG------VVNVTD 92 (120)
T ss_pred HhhcCcccCCCcee------eEeccc
Confidence 34568889999999 566544
No 30
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=20.96 E-value=1.1e+02 Score=21.85 Aligned_cols=37 Identities=11% Similarity=0.165 Sum_probs=25.3
Q ss_pred cccccCCcCCCcee------eccCCeEEEEEEcCCCCEEEEEE
Q 031280 56 YEEGCLSFPGIHAD------VERPESVKIDARDINGARFSVSL 92 (162)
Q Consensus 56 ~~EgCLS~pg~~~~------V~R~~~I~V~y~d~~G~~~~~~~ 92 (162)
..+.++|+..+... ..+...+++.|.|++|.++++.-
T Consensus 15 ~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS 57 (83)
T cd06404 15 SIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISS 57 (83)
T ss_pred EcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecC
Confidence 34445555543322 24567899999999999998864
No 31
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=20.73 E-value=1.6e+02 Score=17.95 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=18.0
Q ss_pred eEEEE-EEcCCCCEEEEEEecch
Q 031280 75 SVKID-ARDINGARFSVSLSDLP 96 (162)
Q Consensus 75 ~I~V~-y~d~~G~~~~~~~~G~~ 96 (162)
.+.|. |.|.+|+....+-.||.
T Consensus 3 ~~~v~g~~~~~Gkrk~~~k~GF~ 25 (46)
T PF14657_consen 3 YYRVYGYDDETGKRKQKTKRGFK 25 (46)
T ss_pred EEEEEEEECCCCCEEEEEcCCCC
Confidence 45674 78889999999999975
No 32
>PF03900 Porphobil_deamC: Porphobilinogen deaminase, C-terminal domain; InterPro: IPR022418 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. Porphobilinogen deaminase (also known as hydroxymethylbilane synthase, 2.5.1.61 from EC) functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the polymerisation of four PBG molecules into the tetrapyrrole structure, preuroporphyrinogen, with the concomitant release of four molecules of ammonia. This enzyme uses a unique dipyrro-methane cofactor made from two molecules of PBG, which is covalently attached to a cysteine side chain. The tetrapyrrole product is synthesized in an ordered, sequential fashion, by initial attachment of the first pyrrole unit (ring A) to the cofactor, followed by subsequent additions of the remaining pyrrole units (rings B, C, D) to the growing pyrrole chain []. The link between the pyrrole ring and the cofactor is broken once all the pyrroles have been added. This enzyme is folded into three distinct domains that enclose a single, large active site that makes use of an aspartic acid as its one essential catalytic residue, acting as a general acid/base during catalysis [, ]. A deficiency of hydroxymethylbilane synthase is implicated in the neuropathic disease, Acute Intermittent Porphyria (AIP) []. This entry represents the C-terminal domain of porphobilinogen deaminase, an enzyme involved in tetrapyrrole biosynthesis. The structure of this alpha/beta domain consists of alpha-beta(3)-alpha in two layers []. Porphobilinogen deaminase has a three-domain structure. Domains 1 (N-terminal) and 2 are duplications with the same structure, resembling the transferrins and periplasmic binding proteins. The dipyrromethane cofactor is covalently linked to domain 3 (C-terminal), but is bound by extensive salt-bridges and hydrogen-bonds within the cleft between domains 1 and 2, at a position corresponding to the binding sites for small-molecule ligands in the analogous proteins []. The enzyme has a single catalytic site, and the flexibility between domains is thought to aid elongation of the polypyrrole product in the active-site cleft of the enzyme.; GO: 0033014 tetrapyrrole biosynthetic process; PDB: 3EQ1_B 3ECR_A 1GTK_A 1AH5_A 2YPN_A 1PDA_A 1YPN_A.
Probab=20.67 E-value=1.9e+02 Score=19.31 Aligned_cols=36 Identities=28% Similarity=0.537 Sum_probs=21.5
Q ss_pred cccCCcC-CCceeeccCC--eEEEEEEcCCCCE--EEEEEec
Q 031280 58 EGCLSFP-GIHADVERPE--SVKIDARDINGAR--FSVSLSD 94 (162)
Q Consensus 58 EgCLS~p-g~~~~V~R~~--~I~V~y~d~~G~~--~~~~~~G 94 (162)
=|| ++| |.++.+.=.. +++..+.+.+|.. +..+.+|
T Consensus 16 ggC-~~Piga~a~~~~~~~l~l~~~v~~~dG~~~~~~~~~~~ 56 (74)
T PF03900_consen 16 GGC-HSPIGAYAKIEGDERLRLRAMVGSPDGSRIIIRVEITG 56 (74)
T ss_dssp --T-TSSEEEEEEEETTE-EEEEEEEE-TTSSSEEEEEEEEE
T ss_pred CCC-CCceeeEEEEcCCCEEEEEEEEECCCCCEEEEEEEEEc
Confidence 367 667 8878876444 3444566899975 5556666
Done!