Query 031280
Match_columns 162
No_of_seqs 110 out of 1130
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 18:59:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pn3_A Peptide deformylase 1B, 100.0 5.4E-63 1.8E-67 399.0 12.3 162 1-162 32-193 (193)
2 3u04_A Peptide deformylase 1; 100.0 2.7E-54 9.3E-59 347.4 13.6 134 1-134 37-187 (190)
3 1xeo_A Peptide deformylase; co 100.0 1.3E-53 4.4E-58 337.9 14.0 130 1-133 34-163 (168)
4 1n5n_A Peptide deformylase; me 100.0 2.6E-53 8.9E-58 339.4 14.4 131 1-133 47-177 (180)
5 3qu1_A Peptide deformylase 2; 100.0 2.1E-53 7E-58 337.6 13.2 130 1-133 37-167 (171)
6 1rl4_A Formylmethionine deform 100.0 2E-53 6.7E-58 342.1 13.0 134 1-134 40-174 (188)
7 2w3t_A Peptide deformylase; pr 100.0 4.3E-53 1.5E-57 340.1 14.2 131 1-134 34-164 (188)
8 2ew5_A Peptide deformylase; in 100.0 3.4E-53 1.1E-57 339.0 12.5 131 1-132 34-167 (181)
9 1lme_A PDF, peptide deformylas 100.0 4E-53 1.4E-57 337.2 11.0 127 1-132 45-171 (176)
10 1v3y_A Peptide deformylase; pr 100.0 2E-52 6.8E-57 337.1 14.1 131 1-132 33-175 (192)
11 3e3u_A Peptide deformylase; me 100.0 2.4E-52 8.2E-57 337.8 14.0 131 1-131 40-177 (197)
12 1y6h_A Peptide deformylase; op 100.0 2.3E-53 7.8E-58 338.7 7.5 131 1-131 37-172 (177)
13 3uwb_A RIIA-RIIB membrane-asso 100.0 6.2E-53 2.1E-57 329.9 9.6 119 1-119 34-152 (154)
14 4dr9_A Peptide deformylase; hy 100.0 1.7E-52 5.9E-57 337.5 10.8 128 1-128 50-177 (192)
15 3dld_A Peptide deformylase; ba 100.0 2.6E-52 8.9E-57 331.2 9.2 122 1-122 35-161 (171)
16 1ws0_A Peptide deformylase 1; 100.0 1.6E-52 5.4E-57 328.2 7.4 120 1-124 35-154 (156)
17 3g5k_A Peptide deformylase, mi 100.0 1.4E-51 4.7E-56 329.8 9.1 121 1-121 39-173 (183)
18 1zxz_A PDF, peptide deformylas 100.0 6.3E-51 2.1E-55 329.4 7.9 122 1-122 38-173 (197)
19 2okl_A Peptide deformylase 2; 100.0 6.9E-50 2.4E-54 320.6 10.8 121 1-121 38-173 (185)
20 2os0_A Peptide deformylase; PD 100.0 1.8E-49 6.2E-54 318.8 10.9 121 1-121 37-176 (188)
21 1lm4_A Peptide deformylase PDF 100.0 1.9E-49 6.6E-54 320.2 10.4 121 1-121 48-184 (194)
22 3svj_P Peptide deformylase 3; 100.0 3E-49 1E-53 321.0 8.8 121 1-121 49-192 (203)
23 3l87_A Peptide deformylase; hy 100.0 2.6E-48 9E-53 321.7 9.1 121 1-121 83-227 (238)
24 2kvz_A ISPE; structural genomi 38.0 24 0.00081 24.2 2.8 26 71-96 4-31 (85)
25 2bkf_A Zinc-finger protein NBR 29.9 40 0.0014 23.3 2.9 21 74-94 44-64 (87)
26 3uip_D E3 SUMO-protein ligase 27.7 22 0.00075 23.6 1.2 16 100-115 49-64 (67)
27 2kt7_A Putative peptidoglycan 25.6 42 0.0014 23.7 2.4 22 73-94 5-28 (102)
28 1d9n_A Methyl-CPG-binding prot 24.8 59 0.002 21.6 2.9 36 54-89 2-44 (75)
No 1
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision pathway, N induced-FIT, hydrolase-hydrolase inhibitor complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB: 3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A 3pn6_A 3m6r_A 3cpm_A
Probab=100.00 E-value=5.4e-63 Score=398.97 Aligned_cols=162 Identities=78% Similarity=1.296 Sum_probs=143.9
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCCCCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V~y 80 (162)
|++|||+++||||||||||+++|+||++..+..++..+.+||||+|++.|+++...+|||||+||+++.|+||.+|+|+|
T Consensus 32 M~eTM~~a~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~ 111 (193)
T 3pn3_A 32 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDA 111 (193)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECTTCSTTSSCCEEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESCEEEEE
T ss_pred HHHHHHHCCCeEEEccccCcceEEEEEECCCCcCCcccEEEECCEEEecCCcEEEeecccccCCCCCCcCcCCCEEEEEE
Confidence 89999999999999999999999999998754434468999999999999998889999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHHHHHhhHhhcCCCChHHHHHHHhhhhccccC
Q 031280 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEALEKKYEDKTGLQSPEKIEASKRRKAAVGFG 160 (162)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (162)
+|++|++++++++||+|||||||+|||+|+||+||+++.++.++.+++++++++|+.++++|+||.|..++.+|+++|||
T Consensus 112 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~kr~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
T 3pn3_A 112 RDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYEEKTGLPSPERVEARQKRKAGVGFG 191 (193)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGSCHHHHHTTHHHHHHHHHHHHHHHSSCCSSCGGGC----------
T ss_pred EcCCCCEEEEEEEChhhhhhhHHHHHhCCEeeeeecCHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 031280 161 KS 162 (162)
Q Consensus 161 ~~ 162 (162)
||
T Consensus 192 ~~ 193 (193)
T 3pn3_A 192 KR 193 (193)
T ss_dssp --
T ss_pred CC
Confidence 98
No 2
>3u04_A Peptide deformylase 1; ssgcid, actinonin, ehrlichia chaffeensi structural genomics; HET: BB2; 1.70A {Ehrlichia chaffeensis} SCOP: d.167.1.0 PDB: 3oca_A
Probab=100.00 E-value=2.7e-54 Score=347.42 Aligned_cols=134 Identities=31% Similarity=0.553 Sum_probs=124.0
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCC-----------------CCceeEEEcceEEeeCCceeecccccCCc
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-----------------EGEEIVLVNPRVNKYSNKMIPYEEGCLSF 63 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~-----------------~~~~~v~INP~Iv~~s~~~~~~~EgCLS~ 63 (162)
|++|||+++||||||||||+++||||++..+... ...+.+||||+|++.|+++...+|||||+
T Consensus 37 M~eTM~~~~GvGLAApQIGv~~Ri~vid~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSv 116 (190)
T 3u04_A 37 MFETMHANQGLGLAAVQVGVHKRILVMNVPEEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSV 116 (190)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEEECCC-------------CTTCBSSEEEEEEEEEEEEEECSCEEEEEECCTTS
T ss_pred HHHHHHHcCCeEEehhhcCCceeEEEEEcCccccccccccccccccccccccCCCEEEECCEEEecCCCEeeccCCCCCc
Confidence 8999999999999999999999999999864311 23578999999999999988889999999
Q ss_pred CCCceeeccCCeEEEEEEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHHHHHh
Q 031280 64 PGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEALEKK 134 (162)
Q Consensus 64 pg~~~~V~R~~~I~V~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~~~~~ 134 (162)
||+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++.++..+.++++++.+.
T Consensus 117 Pg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~k~~~~ 187 (190)
T 3u04_A 117 PGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVKKKERT 187 (190)
T ss_dssp TTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHHHHHCC
T ss_pred CCcceeeccchheEEEEECCCCCEEEEEEEChhhhhhhhHHHhcCCEeeeeecCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999887644
No 3
>1xeo_A Peptide deformylase; cobalt deformylase, formate, hydrolase; 1.30A {Escherichia coli} SCOP: d.167.1.1 PDB: 1bs5_A 1bs6_A 1bs7_A 1bs8_A 1bsj_A* 1bsk_A* 1bsz_A* 1g27_A* 1bs4_A* 1icj_A* 1lru_A* 1xem_A 1xen_A 1g2a_A 2ai8_A* 4al3_A 4al2_A 3k6l_A* 1dff_A 1def_A ...
Probab=100.00 E-value=1.3e-53 Score=337.90 Aligned_cols=130 Identities=41% Similarity=0.645 Sum_probs=120.9
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCCCCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V~y 80 (162)
|++|||+++||||||||||+++|+||++..++. ..+.+||||+|++.|+++. .+|||||+||+++.|+||.+|+|+|
T Consensus 34 M~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~~--~~~~vlINP~I~~~s~~~~-~~EGCLSvPg~~~~V~R~~~I~v~~ 110 (168)
T 1xeo_A 34 MFETMYAEEGIGLAATQVDIHQRIIVIDVSENR--DERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRA 110 (168)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECCCTTS--CCCEEEEEEEEEEEECCBC-CEECCTTSTTCCEECCBCSEEEEEE
T ss_pred HHHHHHHCCCEEEEhHhCCcceEEEEEEccCCc--CccEEEECCEEeccCCCEE-EecCccCcCCEEEEeEcccEEEEEE
Confidence 899999999999999999999999999986432 2479999999999998876 8999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHHHHH
Q 031280 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEALEK 133 (162)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~~~~ 133 (162)
+|++|++++++++||+|||||||+|||+|+||+||+++..+..+.++++++.+
T Consensus 111 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~~~~~~~~~~~~ 163 (168)
T 1xeo_A 111 LDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDR 163 (168)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHHHHHH
T ss_pred ECCCCCEEEEEEeCCeEEeeeehhHHhCCEEEeeeCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999888887543
No 4
>1n5n_A Peptide deformylase; metalloenzyme, drug design, deformylation, hydrolase; 1.80A {Pseudomonas aeruginosa} SCOP: d.167.1.1 PDB: 1s17_A* 1ix1_A* 1lry_A*
Probab=100.00 E-value=2.6e-53 Score=339.36 Aligned_cols=131 Identities=38% Similarity=0.676 Sum_probs=122.1
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCCCCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V~y 80 (162)
|++|||+++||||||||||+++|+||++..++. ..+.+||||+|++.|+++...+|||||+||+++.|+||.+|+|+|
T Consensus 47 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~--~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~ 124 (180)
T 1n5n_A 47 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDK--SEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKA 124 (180)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEECSTTS--CCEEEEEEEEEEESCSCEEEEEECCTTSTTCCEEEEEESCEEEEE
T ss_pred HHHHHHHCCCeEEEhhhcCcceEEEEEEccCCC--CccEEEECCEEecCCCCEEecccCCcCcCCcceEEeccCEEEEEE
Confidence 899999999999999999999999999986532 257999999999999987778999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHHHHH
Q 031280 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEALEK 133 (162)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~~~~ 133 (162)
+|++|++++++++||+|||||||+|||+|+||+||+++..+..+.++++++.+
T Consensus 125 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~~~~ 177 (180)
T 1n5n_A 125 LDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHR 177 (180)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHBTCCGGGGSCHHHHHHHHHHHHHHHH
T ss_pred ECCCCCEEEEEEcCCeEEeeeehhHhhCCEeEeeecCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999998888877543
No 5
>3qu1_A Peptide deformylase 2; structural genomics, center for structural genomics of infec diseases, csgid, metal binding; 1.80A {Vibrio cholerae} SCOP: d.167.1.0
Probab=100.00 E-value=2.1e-53 Score=337.59 Aligned_cols=130 Identities=37% Similarity=0.578 Sum_probs=121.4
Q ss_pred CHHhhhc-CCCeeEeccccCccccEEEEecCCCCCCCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEEE
Q 031280 1 MFDVMYK-TDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKID 79 (162)
Q Consensus 1 m~~tM~~-~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V~ 79 (162)
|++|||+ ++||||||||||+++|+||++..++. ..+.+||||+|++ |++....+|||||+||+++.|+||.+|+|+
T Consensus 37 M~eTm~~~~~GvGLAApQIGv~~ri~vid~~~~~--~~~~vlINP~I~~-~~~~~~~~EGCLSvPg~~~~V~R~~~I~V~ 113 (171)
T 3qu1_A 37 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNR--DQPLVLINPKVVS-GSNKEMGQEGCLSVPDYYADVERYTSVVVE 113 (171)
T ss_dssp HHHHHHHSSSCCEEEGGGGTCCBCEEEECCCSSS--CCCEEEEEEEEEE-EEEEEEEEECCTTSTTCCEEEEEEEEEEEE
T ss_pred HHHHHHhcCCcEEEEccccCcceEEEEEEccCCC--CccEEEECCEEEe-CCCeEEcccCccCcCCccccccCchhhEEE
Confidence 8999999 99999999999999999999986432 3589999999997 777778899999999999999999999999
Q ss_pred EEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHHHHH
Q 031280 80 ARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEALEK 133 (162)
Q Consensus 80 y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~~~~ 133 (162)
|+|++|++++++++||+|||||||+|||+|+||+||+++..+.++.++++++.+
T Consensus 114 ~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~k~~~ 167 (171)
T 3qu1_A 114 ALDREGKPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVK 167 (171)
T ss_dssp EECTTSCEEEEEECSTHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHHHHHH
T ss_pred EECCCCCEEEEEEECHHHHHHhHHHHhhCCEehhhhCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988654
No 6
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design, malaria, PDF, peptide DEFO plasmodium, hydrolase; HET: BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1 PDB: 1rqc_A 1jym_A
Probab=100.00 E-value=2e-53 Score=342.09 Aligned_cols=134 Identities=45% Similarity=0.763 Sum_probs=119.0
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCC-CCCCCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVG-ERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKID 79 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~-~~~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V~ 79 (162)
|++|||+++||||||||||+++|+||++... ......+.+||||+|++.|+++...+|||||+||+++.|+||.+|+|+
T Consensus 40 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~ 119 (188)
T 1rl4_A 40 MFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSIS 119 (188)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEC-----------CEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESCEEEE
T ss_pred HHHHHHHCCCeEEEhhhcCcceEEEEEEccccccCcccceEEECCEEEecCCcEEeccccccccCCccEEEecccEEEEE
Confidence 8999999999999999999999999999743 112234689999999999998877899999999999999999999999
Q ss_pred EEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHHHHHh
Q 031280 80 ARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEALEKK 134 (162)
Q Consensus 80 y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~~~~~ 134 (162)
|+|++|++++++++||+|||||||+|||+|+||+||+++..+..+.++++++.+.
T Consensus 120 ~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~~~~~ 174 (188)
T 1rl4_A 120 YYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIRD 174 (188)
T ss_dssp EECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGBCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCEEEEEEeCCeEEEeEehhHhhCCEEEEeecCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999998888876544
No 7
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase, metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A
Probab=100.00 E-value=4.3e-53 Score=340.05 Aligned_cols=131 Identities=40% Similarity=0.635 Sum_probs=121.9
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCCCCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V~y 80 (162)
|++|||+++||||||||||+++|+||++..+.. ..+.+||||+|++.|+++. .+|||||+||+++.|+||.+|+|+|
T Consensus 34 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~--~~~~vlINP~I~~~s~~~~-~~EGCLSvPg~~~~V~R~~~I~V~~ 110 (188)
T 2w3t_A 34 MFETMYAEEGIGLAATQVDIHQRIIVIDVSENR--DERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRA 110 (188)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECCCTTS--CCCEEEEEEEEEEEESCEE-EEECCTTSTTCCEEEEECSEEEEEE
T ss_pred HHHHHHhCCCEEEEhHHcCcceEEEEEEccCCc--CceEEEECCEEEecCCCEE-eecCccCcCCEEEEEEcccEEEEEE
Confidence 899999999999999999999999999986432 2478999999999998876 8999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHHHHHh
Q 031280 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEALEKK 134 (162)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~~~~~ 134 (162)
+|++|++++++++||+|||||||+|||+|+||+||+++..+..+.++++++.+.
T Consensus 111 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~~~~~ 164 (188)
T 2w3t_A 111 LDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRL 164 (188)
T ss_dssp ECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCEEEEEEECCeEEeeeehHHHhCCEeEeeecCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999998888876543
No 8
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A {Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Probab=100.00 E-value=3.4e-53 Score=338.99 Aligned_cols=131 Identities=34% Similarity=0.588 Sum_probs=119.7
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCC--CCCce-eEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER--GEGEE-IVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVK 77 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~--~~~~~-~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~ 77 (162)
|++|||+++||||||||||+++|+||++..+.. ....+ .+||||+|+ .|+++...+|||||+||+++.|+||.+|+
T Consensus 34 M~eTm~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~vlINP~I~-~s~~~~~~~EGCLSvPg~~~~V~R~~~I~ 112 (181)
T 2ew5_A 34 MYETMIASEGIGLAAIQVGLPLRMLIINLPQEDGVQHKEDCLEIINPKFI-ETGGSMMYKEGCLSVPGFYEEVERFEKVK 112 (181)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECCCCTTSCCCGGGCEEEEEEEEE-EEECCEEEEECCTTSTTCCEEEEECSEEE
T ss_pred HHHHHHHCCCeEEEhhhcCcceEEEEEECCCcccccccCccEEEECCEEE-EcCCEEEcccCCcccCCCcceeccccEEE
Confidence 899999999999999999999999999986431 22345 899999999 88886678999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHHHH
Q 031280 78 IDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEALE 132 (162)
Q Consensus 78 V~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~~~ 132 (162)
|+|+|++|++++++++||+|||||||+|||+|+||+||+++..+..+.++++++.
T Consensus 113 V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~~~ 167 (181)
T 2ew5_A 113 IEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQ 167 (181)
T ss_dssp EEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCCHHHHHHHHHHHHHC-
T ss_pred EEEECCCCCEEEEEEeCceEEeeeehhHHhCCEeEeeeCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888887753
No 9
>1lme_A PDF, peptide deformylase; thermophIle, metalloenzyme, deformylation, structural genomics, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.167.1.1
Probab=100.00 E-value=4e-53 Score=337.20 Aligned_cols=127 Identities=36% Similarity=0.678 Sum_probs=108.7
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCCCCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V~y 80 (162)
|++|||+++||||||||||+++|+||++..+ .+.+||||+|++.|+++...+|||||+||+++.|+||.+|+|+|
T Consensus 45 M~eTM~~~~GvGLAApQIGv~~Ri~vid~~~-----~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~ 119 (176)
T 1lme_A 45 MIETMYHYDGVGLAAPQVGISQRFFVMDVGN-----GPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKY 119 (176)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECSSS-----CCEEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESEEEEEE
T ss_pred HHHHHHHCCCeEEEehhcCcceEEEEEEcCC-----ceEEEECCEEEccCCcEEeccCCccCcCCcceEEecCCEEEEEE
Confidence 8999999999999999999999999998853 26899999999999988778999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHHHH
Q 031280 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEALE 132 (162)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~~~ 132 (162)
+|++|++++++++||+|||||||+|||+|+||+||+++..+..+.++++++.
T Consensus 120 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~~~ 171 (176)
T 1lme_A 120 QNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIA 171 (176)
T ss_dssp ECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBCC--------------
T ss_pred ECCCCCEEEEEEeCCeEEEeeehhHhhCCEeeeeeCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888887643
No 10
>1v3y_A Peptide deformylase; protein synthesis, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP: d.167.1.1
Probab=100.00 E-value=2e-52 Score=337.10 Aligned_cols=131 Identities=36% Similarity=0.606 Sum_probs=117.5
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEE-ecCCCCC----------CCceeEEEcceEEeeCCceeecccccCCcCCCce-
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVF-NPVGERG----------EGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHA- 68 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi-~~~~~~~----------~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~- 68 (162)
|++|||+++||||||||||+++|+||+ +..+..+ ...+.+||||+|++.|++.. .+|||||+||+++
T Consensus 33 M~eTM~~~~GvGLAApQIGv~~ri~Vi~d~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~-~~EGCLSvPg~~~g 111 (192)
T 1v3y_A 33 MLETMFEAKGVGLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVRRVYVVANPVITYREGLVE-GTEGCLSLPGLYSE 111 (192)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEEC------------CTTTCSCEEEEEEEEEEEEECCEE-EEECCTTSTTCCEE
T ss_pred HHHHHHhCCCcEEEecccCcceEEEEEEccCccccccccccccccccCceEEECCEEEEcCCcEE-EeCCCCCcCCEecc
Confidence 899999999999999999999999999 7643211 13578999999999998876 8999999999999
Q ss_pred eeccCCeEEEEEEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHHHH
Q 031280 69 DVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEALE 132 (162)
Q Consensus 69 ~V~R~~~I~V~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~~~ 132 (162)
.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++..+..+.+++++..
T Consensus 112 ~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~~~ 175 (192)
T 1v3y_A 112 EVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLEANRAEL 175 (192)
T ss_dssp EEEECSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHTHHHH
T ss_pred cccccCEEEEEEECCCCCEEEEEEeccEEEEeehhhHhhCCEeEEEecCHhHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888877643
No 11
>3e3u_A Peptide deformylase; metallo-enzyme, hydrolase, iron, metal-binding, protein biosynthesis; HET: NVC; 1.56A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.4e-52 Score=337.77 Aligned_cols=131 Identities=27% Similarity=0.499 Sum_probs=119.2
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCC--CCCCceeEEEcceEEeeCCc-----eeecccccCCcCCCceeeccC
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE--RGEGEEIVLVNPRVNKYSNK-----MIPYEEGCLSFPGIHADVERP 73 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~--~~~~~~~v~INP~Iv~~s~~-----~~~~~EgCLS~pg~~~~V~R~ 73 (162)
|++|||+++||||||||||+++||||++..+. .....+.+||||+|+..++. +...+|||||+||+++.|+||
T Consensus 40 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~vlINP~I~~~~~~~~~~e~~~~~EGCLSvPg~~~~V~R~ 119 (197)
T 3e3u_A 40 MYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRA 119 (197)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEECCTTBCTTSCSEEEEEEEEEEESCCCCSCCCTTTCEEECTTSTTCEEECCCC
T ss_pred HHHHHHHCCCeEEEccccCcceEEEEEEcCcccccccccceEEEcCEEEccCcceeccccccccCCCCCcCCCceeccCC
Confidence 89999999999999999999999999998653 22235899999999964443 236899999999999999999
Q ss_pred CeEEEEEEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHHH
Q 031280 74 ESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEAL 131 (162)
Q Consensus 74 ~~I~V~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~~ 131 (162)
.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++.++.++.+++++.
T Consensus 120 ~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~k~ 177 (197)
T 3e3u_A 120 KWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSH 177 (197)
T ss_dssp SEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCCHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCEEEEEEEChhhhhhhhhhHhhCCEeeheecCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999875
No 12
>1y6h_A Peptide deformylase; open and close conformation, PDF, hydrolase; 2.20A {Leptospira interrogans} SCOP: d.167.1.1 PDB: 1sv2_A* 1vey_A* 1vev_A 1vez_A 1szz_A*
Probab=100.00 E-value=2.3e-53 Score=338.74 Aligned_cols=131 Identities=37% Similarity=0.672 Sum_probs=119.4
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCC-----CCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCe
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-----EGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPES 75 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~-----~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~ 75 (162)
|++|||+++||||||||||+++|+||++..+... ...+.+||||+|++.|+++...+|||||+||+++.|+||.+
T Consensus 37 M~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~ 116 (177)
T 1y6h_A 37 MFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQ 116 (177)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECCSSCTTSTTSCCCCCEEEEEEEEEECCSCEEEEEEEETTEEEEEEEEEEESE
T ss_pred HHHHHHHCCCeEEEehhcCCceeEEEEEccCccccccccccCcEEEECCEEEEcCCCEEecccCCcccCCeeeeeeccce
Confidence 8999999999999999999999999999854211 12368999999999999877789999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHHHHH
Q 031280 76 VKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEAL 131 (162)
Q Consensus 76 I~V~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~~~~ 131 (162)
|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++..+..+.++++++
T Consensus 117 I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~~~~~~~~~~ 172 (177)
T 1y6h_A 117 IRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLDSS 172 (177)
T ss_dssp EEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBSCTTSEEEHHHHHHH
T ss_pred EEEEEECCCCCEEEEEEeCceeEehhhhHHHhCCEeeeeecChhhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998888777777664
No 13
>3uwb_A RIIA-RIIB membrane-associated protein; actinonin, probable peptide deformylase hydrolase-antibiotic complex; HET: BB2; 1.70A {Synechococcus phage s-ssm7} PDB: 3uwa_A*
Probab=100.00 E-value=6.2e-53 Score=329.90 Aligned_cols=119 Identities=40% Similarity=0.706 Sum_probs=110.2
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCCCCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V~y 80 (162)
|++|||+++||||||||||+++|+||++..+++....+.+||||+|++.|+++...+|||||+||+++.|+||.+|+|+|
T Consensus 34 M~~Tm~~~~GvGLAApQIGv~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~v~~ 113 (154)
T 3uwb_A 34 MCEAMWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLMVNPKITWKSEEKVLFDEGCLSVPDQNGEVLRPKSIKVTF 113 (154)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEECCBTTTBSCEEEEEEEEEEEECSCEEEEEEEETTEEEEEEEEEEESCEEEEE
T ss_pred HHHHHHHCCCcEEEccccCccEEEEEEEccccccCcccEEEECCEEEECCCcEEecccCccCcCCcceeccCcceeEEEE
Confidence 89999999999999999999999999998653222368999999999999998778999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHH
Q 031280 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119 (162)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~ 119 (162)
+|++|++++++++||+|||||||+|||+|+||+||++++
T Consensus 114 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~ 152 (154)
T 3uwb_A 114 QNKDGKYKKWKLDGLAARVVQHEIDHLEGILFVDYFNDK 152 (154)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGCC--
T ss_pred ECCCCCEEEEEEEChhhhhhhhHHHhhCCEeeeEEeCCc
Confidence 999999999999999999999999999999999999976
No 14
>4dr9_A Peptide deformylase; hydrolase-hydrolase inhibitor complex; HET: BB2; 1.90A {Synechococcus elongatus}
Probab=100.00 E-value=1.7e-52 Score=337.55 Aligned_cols=128 Identities=41% Similarity=0.695 Sum_probs=115.1
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCCCCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V~y 80 (162)
|++|||+++||||||||||+++|+||++..++.....+.+||||+|++.|+++...+|||||+||+++.|+||.+|+|+|
T Consensus 50 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~ 129 (192)
T 4dr9_A 50 MLQTMYSADGIGLAAPQVGINKQLIVIDLELEDEQAPPLVLINPKIERTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSY 129 (192)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCSSEEEECCCC-----CCEEEEEEEEEEEEEEEEEEEECCTTSTTCCEEEEEEEEEEEEE
T ss_pred HHHHHHHcCCeEEechhcCCceeEEEEEcCccccCcccEEEECCEEEECCCCEeeccCCCCCcCCeeeEecccceEEEEE
Confidence 89999999999999999999999999998653333457999999999999888789999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHHHHHH
Q 031280 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQL 128 (162)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~~~~~ 128 (162)
+|++|++++++++||+|||||||+|||+|+||+||+++..+.....++
T Consensus 130 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~~~~~~~ 177 (192)
T 4dr9_A 130 KDENGRPQRLVADGLLARCIQHEMDHLNGVLFVDRVENRLELNEALDK 177 (192)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGCCCHHHHHHHHHH
T ss_pred ECCCCCEEEEEEEChhhhhhhhHhHhhCCEeeEEEeCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999998766544443
No 15
>3dld_A Peptide deformylase; bacterial blight, XOO1075, xanthomonas oryzae PV. oryzae KACC10331, hydrolase; 2.60A {Xanthomonas oryzae PV} SCOP: d.167.1.0
Probab=100.00 E-value=2.6e-52 Score=331.16 Aligned_cols=122 Identities=33% Similarity=0.501 Sum_probs=112.9
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCC-----CCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCe
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-----EGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPES 75 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~-----~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~ 75 (162)
|++|||+++||||||||||+++|+||++..+... ...+.+||||+|++.|+++...+|||||+||+++.|+||.+
T Consensus 35 M~eTm~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~ 114 (171)
T 3dld_A 35 MFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERYPEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRY 114 (171)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCSSEEEEEESSCSSSCSCCCEEEEEEEEEEEEESSSCEEEEEEEETTEEEEEEEEEEESE
T ss_pred HHHHHHHcCCEEEEccccCCceeEEEEEcccccccccccccCCEEEECCEEEEcCCceeecCCCccccCCceEeeeCChh
Confidence 8999999999999999999999999999864311 12478999999999999888899999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHH
Q 031280 76 VKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLD 122 (162)
Q Consensus 76 I~V~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~ 122 (162)
|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++.++.
T Consensus 115 I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~kr~ 161 (171)
T 3dld_A 115 IRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDTF 161 (171)
T ss_dssp EEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCSCGGGC
T ss_pred cEEEEECCCCCEEEEEEeChhhhhhhhHhHhcCCEeehhcCCHHHhh
Confidence 99999999999999999999999999999999999999999987665
No 16
>1ws0_A Peptide deformylase 1; alpha + beta topology, hydrolase; 1.70A {Bacillus cereus} PDB: 1ws1_A*
Probab=100.00 E-value=1.6e-52 Score=328.22 Aligned_cols=120 Identities=37% Similarity=0.643 Sum_probs=109.9
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCCCCCceeEEEcceEEeeCCceeecccccCCcCCCceeeccCCeEEEEE
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~V~y 80 (162)
|++|||+++||||||||||+++|+||++..+.. .+.+||||+|++.|++. ..+|||||+||+++.|+||.+|+|+|
T Consensus 35 M~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~~---~~~vlINP~I~~~s~~~-~~~EGCLSvPg~~~~V~R~~~I~v~~ 110 (156)
T 1ws0_A 35 MHETMLIADGVGLAAPQVGVSLQVAVVDVDDDT---GKIELINPSILEKRGEQ-VGPEGCLSFPGLYGEVERADYIKVRA 110 (156)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEECCTTT---CEEEEEEEEEEEEEEEE-EEEECCTTSTTCCEEEEEEEEEEEEE
T ss_pred HHHHHHHCCCEEEEhHHcCcceeEEEEEccCCc---CcEEEECCEEEccCCCE-EeccCCcccCCeeeEeecccEEEEEE
Confidence 899999999999999999999999999986432 24899999999999887 68999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHHHH
Q 031280 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSI 124 (162)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~~~ 124 (162)
+|++|++++++++||+|||||||+|||+|+||+||+++..+..+
T Consensus 111 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~ 154 (156)
T 1ws0_A 111 QNRRGKVFLLEAEGFLARAIQHEIDHLHGVLFTSKVTRYYEENE 154 (156)
T ss_dssp ECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGTEEEECC---
T ss_pred ECCCCCEEEEEEeCceEEEeEehhHhhCCEeeeeEcCHHHHHHh
Confidence 99999999999999999999999999999999999998766543
No 17
>3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase, iron, metal-bindi mitochondrion, protein biosynthesis, transit peptide; HET: BB2; 1.70A {Homo sapiens} PDB: 3g5p_A
Probab=100.00 E-value=1.4e-51 Score=329.80 Aligned_cols=121 Identities=34% Similarity=0.544 Sum_probs=110.8
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCCC--------------CCCceeEEEcceEEeeCCceeecccccCCcCCC
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER--------------GEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGI 66 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~~--------------~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~ 66 (162)
|++|||+++||||||||||+++|+||++..+.. ....+.+||||+|++.|+++...+|||||+||+
T Consensus 39 M~eTM~~~~GvGLAApQIGv~~Ri~vid~~~~~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~ 118 (183)
T 3g5k_A 39 LVQVMRRRRCVGLSAPQLGVPRQVLALELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGF 118 (183)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEEECHHHHHTSCHHHHHHHTCCCEEEEEEEEEEEEEEEEEEEEEEECCTTSTTE
T ss_pred HHHHHHHcCCeEEeccccCCceeEEEEEcCccccccccccccccccccccCceEEECCeEEecCCCEEecccCccCcCCc
Confidence 899999999999999999999999999975321 111357999999999988888899999999999
Q ss_pred ceeeccCCeEEEEEEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHH
Q 031280 67 HADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (162)
Q Consensus 67 ~~~V~R~~~I~V~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~ 121 (162)
++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||++++++
T Consensus 119 ~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~s~ 173 (183)
T 3g5k_A 119 LACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTF 173 (183)
T ss_dssp EEEEEEEEEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGTSCGGGC
T ss_pred cEEeeCcceeEEEEECCCCCEEEEEEeChhheehhhHHHHhCCEeEEEEeCHHHh
Confidence 9999999999999999999999999999999999999999999999999998754
No 18
>1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote, higher plant, zinc ION, hydrolase; 2.80A {Arabidopsis thaliana} PDB: 1zy0_A 1zy1_A
Probab=100.00 E-value=6.3e-51 Score=329.41 Aligned_cols=122 Identities=39% Similarity=0.628 Sum_probs=110.6
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEecCCC--------------CCCCceeEEEcceEEeeCCceeecccccCCcCCC
Q 031280 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE--------------RGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGI 66 (162)
Q Consensus 1 m~~tM~~~~gvGLAApQIG~~~ri~vi~~~~~--------------~~~~~~~v~INP~Iv~~s~~~~~~~EgCLS~pg~ 66 (162)
|++|||+++||||||||||+++||||++.... .....+.+||||+|++.|+++...+|||||+||+
T Consensus 38 M~eTM~~~~GVGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~ 117 (197)
T 1zxz_A 38 MIKVMRLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGF 117 (197)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEEECHHHHHSSCHHHHHHTTCCCEEEEEEEEEEEEESSSCEEEEEEEETTEEEE
T ss_pred HHHHHHhCCCcEEEccccCcceEEEEEEcCcccccccccccccccccCCCCceEEECCEEEecCCCEEeeeeCCcccCCe
Confidence 89999999999999999999999999986421 1112358999999999999877789999999999
Q ss_pred ceeeccCCeEEEEEEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHHH
Q 031280 67 HADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLD 122 (162)
Q Consensus 67 ~~~V~R~~~I~V~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~~ 122 (162)
++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++..+.
T Consensus 118 ~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~ 173 (197)
T 1zxz_A 118 RAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFR 173 (197)
T ss_dssp EEEEEEESEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGTBCTTCCE
T ss_pred eeeEecccEEEEEEECCCCCEEEEEEeChhhhHHHHHHHHhCCEeeeeecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999986543
No 19
>2okl_A Peptide deformylase 2; hydrolase; HET: BB2 CIT; 1.70A {Bacillus cereus} PDB: 1lqy_A*
Probab=100.00 E-value=6.9e-50 Score=320.60 Aligned_cols=121 Identities=32% Similarity=0.581 Sum_probs=109.0
Q ss_pred CHHhhhc------------CCCeeEeccccCccccEEEEecCCCCCCCceeEEEcceEEeeCCcee--ecccccCCcCC-
Q 031280 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMI--PYEEGCLSFPG- 65 (162)
Q Consensus 1 m~~tM~~------------~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~Iv~~s~~~~--~~~EgCLS~pg- 65 (162)
|++||++ ++||||||||||+++|+||++..+..+...+.+||||+|++.|+++. ..+|||||+||
T Consensus 38 M~eTm~~~~~~~~~~~y~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~vlINP~I~~~s~~~~~~~~~EGCLSvPg~ 117 (185)
T 2okl_A 38 MIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDRE 117 (185)
T ss_dssp HHHHHHHHTSHHHHHHTTCCCCSEEEGGGGTCCBSEEEEEEECTTCCEEEEEEEEEEEEEECSSEEECTTCCCCTTCCSC
T ss_pred HHHHHHhhhhcchhccccCCCeEEEEhhhcCcCeeEEEEEccCccCCccceEEECCEEEccCCcCccCCCCccCccccCe
Confidence 7899953 78999999999999999999986533233478999999999998865 46899999997
Q ss_pred CceeeccCCeEEEEEEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHH
Q 031280 66 IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (162)
Q Consensus 66 ~~~~V~R~~~I~V~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~ 121 (162)
+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++...
T Consensus 118 ~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 173 (185)
T 2okl_A 118 VPGYVPRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKENP 173 (185)
T ss_dssp CCSCCCEESEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCSSCT
T ss_pred eeEEeecccEEEEEEECCCCCEEEEEEeCceEEehhhhHHHhCCEeeeeecCccCC
Confidence 99999999999999999999999999999999999999999999999999997643
No 20
>2os0_A Peptide deformylase; PDF, hydrolase; 1.30A {Enterococcus faecalis} PDB: 2os1_A* 3g6n_A 3cmd_A
Probab=100.00 E-value=1.8e-49 Score=318.78 Aligned_cols=121 Identities=26% Similarity=0.493 Sum_probs=107.3
Q ss_pred CHHhhhc------------CCCeeEeccccCccccEEEEecCC-CCCC---CceeEEEcceEEeeCCcee--ecccccCC
Q 031280 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVG-ERGE---GEEIVLVNPRVNKYSNKMI--PYEEGCLS 62 (162)
Q Consensus 1 m~~tM~~------------~~gvGLAApQIG~~~ri~vi~~~~-~~~~---~~~~v~INP~Iv~~s~~~~--~~~EgCLS 62 (162)
|++||++ ++||||||||||+++|+||++..+ ...+ ..+.+||||+|++.|++.. ..+|||||
T Consensus 37 M~eTm~~~~~~~~~~~y~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~~~EGCLS 116 (188)
T 2os0_A 37 MLTFLKNSQDPVKAEELQLRGDVGLAAPQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLS 116 (188)
T ss_dssp HHHHHHHHHSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEECC---------EEEEEEEEEEEEECSCEEEETTCCCCTT
T ss_pred HHHHHHhhhhcchhcccccCCcEEEEhhhcCcceeEEEEECCCcccccccccccEEEEcCEEEecCCcEecCCCCcCcce
Confidence 7899953 789999999999999999999864 2111 2468999999999998865 46999999
Q ss_pred cCC-CceeeccCCeEEEEEEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHH
Q 031280 63 FPG-IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (162)
Q Consensus 63 ~pg-~~~~V~R~~~I~V~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~ 121 (162)
+|| +++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++...
T Consensus 117 vPg~~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 176 (188)
T 2os0_A 117 VDRDVPGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKENP 176 (188)
T ss_dssp CCSCCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCSSST
T ss_pred ECCCeEEEeecccEEEEEEECCCCCEEEEEEeCceeEhhhhHHHHhCCEeeeEEcCCcCC
Confidence 997 99999999999999999999999999999999999999999999999999998643
No 21
>1lm4_A Peptide deformylase PDF1; metalloenzyme, hydrolase; 1.45A {Staphylococcus aureus} SCOP: d.167.1.1 PDB: 1lqw_A 2ai9_A 1lmh_A 1q1y_A*
Probab=100.00 E-value=1.9e-49 Score=320.18 Aligned_cols=121 Identities=33% Similarity=0.626 Sum_probs=109.0
Q ss_pred CHHhhhc------------CCCeeEeccccCccccEEEEecCCCC-CCCceeEEEcceEEeeCCcee--ecccccCCcCC
Q 031280 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVGER-GEGEEIVLVNPRVNKYSNKMI--PYEEGCLSFPG 65 (162)
Q Consensus 1 m~~tM~~------------~~gvGLAApQIG~~~ri~vi~~~~~~-~~~~~~v~INP~Iv~~s~~~~--~~~EgCLS~pg 65 (162)
|++||++ ++||||||||||+++|+||++..+.. +...+.+||||+|++.|+++. ..+|||||+||
T Consensus 48 M~eTM~~~~~~~~~~~y~~~~GVGLAApQIGv~~Ri~vid~~~~~~~~~~~~vlINP~Ii~~s~e~~~~~~~EGCLSvPg 127 (194)
T 1lm4_A 48 MREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDD 127 (194)
T ss_dssp HHHHHHHHHSHHHHHHHTCCCBSEEEGGGGTCCBSEEEEEECCCSSSCCEEEEEEEEEEEEECSSEEECTTCCCCTTCSS
T ss_pred HHHHHHhhhhcchhhhcccCCceEEEecccCcceeEEEEEcCCccccccccEEEECCEEEecCCcEecCCCCcCCceECC
Confidence 7899953 79999999999999999999986431 123478999999999998865 46899999997
Q ss_pred -CceeeccCCeEEEEEEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHH
Q 031280 66 -IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (162)
Q Consensus 66 -~~~~V~R~~~I~V~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~ 121 (162)
+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++..+
T Consensus 128 ~~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 184 (194)
T 1lm4_A 128 NVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHP 184 (194)
T ss_dssp CCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCCSSST
T ss_pred ceeEEeccccEEEEEEECCCCCEEEEEEeCceeEhhhhHHHHhCCEeeeeecCcccC
Confidence 99999999999999999999999999999999999999999999999999998654
No 22
>3svj_P Peptide deformylase 3; alpha-beta, metal binding protein, HYDR hydrolase inhibitor complex; HET: 4LI; 1.55A {Streptococcus pneumoniae} SCOP: d.167.1.1 PDB: 3str_P* 3sw8_P* 4eox_P* 1lm6_A 2aia_A* 2ai7_A* 2aie_P* 2os3_A*
Probab=100.00 E-value=3e-49 Score=320.98 Aligned_cols=121 Identities=29% Similarity=0.493 Sum_probs=107.5
Q ss_pred CHHhhhc------------CCCeeEeccccCccccEEEEecCCCC------CC--CceeEEEcceEEeeCCcee--eccc
Q 031280 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVGER------GE--GEEIVLVNPRVNKYSNKMI--PYEE 58 (162)
Q Consensus 1 m~~tM~~------------~~gvGLAApQIG~~~ri~vi~~~~~~------~~--~~~~v~INP~Iv~~s~~~~--~~~E 58 (162)
|++|||+ ++||||||||||+++|+||++..+.. +. ..+.+||||+|++.|++.. ..+|
T Consensus 49 M~eTM~~~~d~~~~~~~~~~~GVGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~~~E 128 (203)
T 3svj_P 49 MMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGE 128 (203)
T ss_dssp HHHHHHHHTSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEEECC---------CEEEEEEEEEEEEEEECSSEEEETTCC
T ss_pred HHHHHHHhccchhhhccccCCcEEEeccccCCceeEEEEEcCccccccccccccCcccEEEECCEEEecCCceecccccc
Confidence 7899987 47999999999999999999976431 11 1368999999999998764 4789
Q ss_pred ccCCcC-CCceeeccCCeEEEEEEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHH
Q 031280 59 GCLSFP-GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (162)
Q Consensus 59 gCLS~p-g~~~~V~R~~~I~V~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~ 121 (162)
||||+| |+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++..+
T Consensus 129 GCLSvPg~~~g~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 192 (203)
T 3svj_P 129 GCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDP 192 (203)
T ss_dssp CCTTCCSCCCSCBCEESSEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGBCSSCT
T ss_pred CccCcCCCcEEEecCcceeEEEEECCCCCEEEEEEEChhhhhhhhHhHhcCCEeeeeEcCCcCc
Confidence 999999 699999999999999999999999999999999999999999999999999998654
No 23
>3l87_A Peptide deformylase; hydrolase, iron, metal-binding, PR biosynthesis; 2.00A {Streptococcus mutans}
Probab=100.00 E-value=2.6e-48 Score=321.75 Aligned_cols=121 Identities=30% Similarity=0.465 Sum_probs=107.9
Q ss_pred CHHhhhc------------CCCeeEeccccCccccEEEEecCCCCC------C---CceeEEEcceEEeeCCcee--ecc
Q 031280 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVGERG------E---GEEIVLVNPRVNKYSNKMI--PYE 57 (162)
Q Consensus 1 m~~tM~~------------~~gvGLAApQIG~~~ri~vi~~~~~~~------~---~~~~v~INP~Iv~~s~~~~--~~~ 57 (162)
|++|||+ ++||||||||||+++||||++..+... + ..+.+||||+|++.|++.. ..+
T Consensus 83 M~eTM~~a~d~~~~~~~~~a~GVGLAAPQIGv~kRi~Vid~~~~~~~~~~~~~~~~~~~~vlINP~Ii~~s~e~~~~~~~ 162 (238)
T 3l87_A 83 MLQFLKNSQDPVTAEKMELRGGVGLAAPQLDISKRIIAVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADG 162 (238)
T ss_dssp HHHHHHHHHSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEEECCCC----CCSSSEEEEEEEEEEEEEEECSSEEEETTC
T ss_pred HHHHHHHhccchhhhhcccCCceEEeccccCCceeEEEEEcCcccccccccccccCcccEEEECCEEEeccCceeccccc
Confidence 7899987 579999999999999999999754310 1 1368999999999998764 478
Q ss_pred cccCCcC-CCceeeccCCeEEEEEEcCCCCEEEEEEecchhhhHHhhhhhhCCceeeecCCHHHH
Q 031280 58 EGCLSFP-GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (162)
Q Consensus 58 EgCLS~p-g~~~~V~R~~~I~V~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~~Drl~~~~~ 121 (162)
|||||+| ++++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++..+
T Consensus 163 EGCLSvPg~~~g~V~R~~~I~V~~~D~~G~~~~~~~~G~lAr~iQHEiDHLdGiLfiDrls~~~~ 227 (238)
T 3l87_A 163 EGCLSVDRVVEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRINEKNP 227 (238)
T ss_dssp CCCTTCCSCCCSCBCEESCEEEEEECTTCCEEEEEECHHHHHHHHHHHHHHTTCCGGGGBCSSCT
T ss_pred CCCcccCCCccEEecChhheEEEEECCCCCEEEEEEeChhhhHHhHHhHhcCCEeeeeecCCCCC
Confidence 9999999 689999999999999999999999999999999999999999999999999998654
No 24
>2kvz_A ISPE; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Listeria monocytogenes}
Probab=37.96 E-value=24 Score=24.16 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=19.5
Q ss_pred ccCCeEEEEEEcCCCCEEE--EEEecch
Q 031280 71 ERPESVKIDARDINGARFS--VSLSDLP 96 (162)
Q Consensus 71 ~R~~~I~V~y~d~~G~~~~--~~~~G~~ 96 (162)
.....|+|.|.|.+|+.+. ..++|..
T Consensus 4 ~k~~~VtV~YvDe~Gn~La~~~~ltG~v 31 (85)
T 2kvz_A 4 GKPNQVTVNYLDENNTSIAPSLYLSGLF 31 (85)
T ss_dssp SCCCCEEEEEECSSSCEEEEEEEECCCT
T ss_pred ccCCeEEEEEECCCCCCCCCCeEEeeeC
Confidence 4567899999999999764 3456643
No 25
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=29.87 E-value=40 Score=23.32 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=17.2
Q ss_pred CeEEEEEEcCCCCEEEEEEec
Q 031280 74 ESVKIDARDINGARFSVSLSD 94 (162)
Q Consensus 74 ~~I~V~y~d~~G~~~~~~~~G 94 (162)
..+.|+|.|.+|.++.+.-++
T Consensus 44 ~~~~ikY~DEenD~v~i~Sq~ 64 (87)
T 2bkf_A 44 NTIQIKYLDEENEEVSINSQG 64 (87)
T ss_dssp SSEEEEEECTTSCEEEECSHH
T ss_pred CceEEEEEcCCCCEEEEecHH
Confidence 377999999999999886433
No 26
>3uip_D E3 SUMO-protein ligase ranbp2; UBC9, nuclear pore complex, ligase isomerase-protein binding complex; HET: CME; 2.29A {Homo sapiens} PDB: 3uio_D* 3uin_D
Probab=27.66 E-value=22 Score=23.58 Aligned_cols=16 Identities=25% Similarity=0.659 Sum_probs=13.1
Q ss_pred HHhhhhhhCCceeeec
Q 031280 100 FQHEFDHLQGILFFER 115 (162)
Q Consensus 100 ~QHEiDHL~Gil~~Dr 115 (162)
|+|++=-|||+||.|-
T Consensus 49 fetavrklng~ly~~~ 64 (67)
T 3uip_D 49 FETAVKKLNGKLYLDG 64 (67)
T ss_dssp HHHHHHTTTTCCCC--
T ss_pred HHHHHHHhCCceecCC
Confidence 7899999999999883
No 27
>2kt7_A Putative peptidoglycan bound protein (LPXTG motif); immunoglobulin fold, all-beta, peptidoglycan binding protein, structural genomics; NMR {Listeria monocytogenes}
Probab=25.56 E-value=42 Score=23.68 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=16.9
Q ss_pred CCeEEEEEEcCCCCEEEE--EEec
Q 031280 73 PESVKIDARDINGARFSV--SLSD 94 (162)
Q Consensus 73 ~~~I~V~y~d~~G~~~~~--~~~G 94 (162)
-..|+|.|.|.+|+.+.- .++|
T Consensus 5 ~~~VtV~YvDe~Gn~Ia~~~~ltG 28 (102)
T 2kt7_A 5 NFTVKVEYVDADGAEIAPSDTLTD 28 (102)
T ss_dssp TCCEEEEEEETTSSEEEEEEEECS
T ss_pred CCEEEEEEEcCCCCCCCCCEeecC
Confidence 467999999999998643 4455
No 28
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=24.84 E-value=59 Score=21.63 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=26.5
Q ss_pred eecccccCCcC-CC-ceeeccCC-----eEEEEEEcCCCCEEE
Q 031280 54 IPYEEGCLSFP-GI-HADVERPE-----SVKIDARDINGARFS 89 (162)
Q Consensus 54 ~~~~EgCLS~p-g~-~~~V~R~~-----~I~V~y~d~~G~~~~ 89 (162)
.+.|..|..+| |. +..+.|.. +..|-|+...|+.+.
T Consensus 2 ~~~~~~~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP~Gkk~R 44 (75)
T 1d9n_A 2 AEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIR 44 (75)
T ss_dssp CSCCEECTTTCSSCEEEECSSSSSCTTCCCCEEEECSSSCEEC
T ss_pred CcccccCCCCCCCCEEEEEEecCCCCCCceEEEEECCCCCeee
Confidence 35688999998 65 34455664 688999999998754
Done!