Query 031282
Match_columns 162
No_of_seqs 231 out of 1908
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 19:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1h_A Gspef-atpub14, armadill 99.6 1.6E-15 5.6E-20 97.3 5.8 65 60-127 5-70 (78)
2 2ckl_A Polycomb group ring fin 99.6 9.6E-16 3.3E-20 104.5 4.3 91 60-150 12-106 (108)
3 4ayc_A E3 ubiquitin-protein li 99.6 2E-15 7E-20 107.2 5.7 48 62-109 52-99 (138)
4 3ztg_A E3 ubiquitin-protein li 99.6 3E-15 1E-19 99.0 6.1 68 58-127 8-78 (92)
5 2djb_A Polycomb group ring fin 99.6 3.5E-15 1.2E-19 94.5 5.6 54 58-111 10-64 (72)
6 3ng2_A RNF4, snurf, ring finge 99.6 2E-15 6.9E-20 95.0 4.2 52 61-112 8-66 (71)
7 2egp_A Tripartite motif-contai 99.5 1.4E-15 4.7E-20 97.7 2.5 51 59-109 8-65 (79)
8 2yur_A Retinoblastoma-binding 99.5 8.8E-15 3E-19 93.2 5.1 51 58-108 10-63 (74)
9 2csy_A Zinc finger protein 183 99.5 9.8E-15 3.3E-19 94.4 5.4 49 60-108 12-60 (81)
10 2ecw_A Tripartite motif-contai 99.5 6.9E-15 2.4E-19 95.4 4.7 62 59-123 15-82 (85)
11 3lrq_A E3 ubiquitin-protein li 99.5 2.5E-15 8.4E-20 101.2 2.4 64 61-127 20-85 (100)
12 2ct2_A Tripartite motif protei 99.5 1.1E-14 3.9E-19 95.2 5.5 59 57-115 9-74 (88)
13 2d8t_A Dactylidin, ring finger 99.5 6.6E-15 2.3E-19 92.9 4.2 50 60-109 12-61 (71)
14 2ecy_A TNF receptor-associated 99.5 1.3E-14 4.4E-19 90.3 5.4 51 59-109 11-62 (66)
15 2ysl_A Tripartite motif-contai 99.5 1.5E-14 5.2E-19 91.5 5.7 51 59-109 16-69 (73)
16 3fl2_A E3 ubiquitin-protein li 99.5 7.1E-15 2.4E-19 102.5 4.1 64 61-126 50-114 (124)
17 2ecv_A Tripartite motif-contai 99.5 8.7E-15 3E-19 94.9 4.1 51 59-109 15-71 (85)
18 2ea6_A Ring finger protein 4; 99.5 9.5E-15 3.3E-19 91.2 4.1 50 59-108 11-67 (69)
19 2kr4_A Ubiquitin conjugation f 99.5 1.8E-14 6.1E-19 94.3 5.4 66 59-127 10-75 (85)
20 2xeu_A Ring finger protein 4; 99.5 6E-15 2E-19 90.9 2.6 48 62-109 2-56 (64)
21 2kiz_A E3 ubiquitin-protein li 99.5 3E-14 1E-18 89.2 5.7 50 61-110 12-64 (69)
22 2y43_A E3 ubiquitin-protein li 99.5 1.2E-14 4E-19 97.5 3.1 64 61-127 20-84 (99)
23 1iym_A EL5; ring-H2 finger, ub 99.5 2E-14 6.7E-19 86.1 3.8 48 61-108 3-54 (55)
24 2kre_A Ubiquitin conjugation f 99.5 3.7E-14 1.3E-18 95.5 5.4 65 59-126 25-89 (100)
25 2ect_A Ring finger protein 126 99.5 5.6E-14 1.9E-18 90.1 5.2 52 60-111 12-66 (78)
26 2ysj_A Tripartite motif-contai 99.5 6.9E-14 2.4E-18 86.1 5.3 45 59-103 16-63 (63)
27 2l0b_A E3 ubiquitin-protein li 99.5 5.8E-14 2E-18 92.9 5.2 49 60-108 37-88 (91)
28 2ecn_A Ring finger protein 141 99.5 3.2E-14 1.1E-18 89.3 3.8 49 60-109 12-60 (70)
29 1wgm_A Ubiquitin conjugation f 99.5 8.1E-14 2.8E-18 93.6 5.9 65 59-126 18-83 (98)
30 2ecm_A Ring finger and CHY zin 99.4 3.8E-14 1.3E-18 84.8 3.4 48 61-108 3-54 (55)
31 1jm7_A BRCA1, breast cancer ty 99.4 2.2E-13 7.7E-18 92.8 7.5 63 62-127 20-85 (112)
32 2ep4_A Ring finger protein 24; 99.4 9.6E-14 3.3E-18 88.1 5.2 51 59-109 11-64 (74)
33 1x4j_A Ring finger protein 38; 99.4 4.2E-14 1.4E-18 90.1 3.2 48 61-108 21-71 (75)
34 1z6u_A NP95-like ring finger p 99.4 5.2E-14 1.8E-18 101.4 4.1 65 61-127 76-141 (150)
35 1chc_A Equine herpes virus-1 r 99.4 4.8E-14 1.6E-18 88.0 3.3 48 62-109 4-52 (68)
36 3l11_A E3 ubiquitin-protein li 99.4 1.8E-14 6.2E-19 99.1 1.1 49 60-108 12-61 (115)
37 2ecj_A Tripartite motif-contai 99.4 1.5E-13 5.3E-18 82.9 4.9 45 59-103 11-58 (58)
38 1g25_A CDK-activating kinase a 99.4 9.9E-14 3.4E-18 85.9 3.6 49 62-110 2-56 (65)
39 3hct_A TNF receptor-associated 99.4 1.3E-13 4.3E-18 95.4 3.7 52 58-109 13-65 (118)
40 2ckl_B Ubiquitin ligase protei 99.4 6.5E-14 2.2E-18 102.1 2.1 65 61-127 52-118 (165)
41 1v87_A Deltex protein 2; ring- 99.4 2.5E-13 8.5E-18 93.1 4.6 48 62-109 24-94 (114)
42 2ecl_A Ring-box protein 2; RNF 99.4 2.5E-13 8.6E-18 88.0 3.9 47 62-108 14-75 (81)
43 4ap4_A E3 ubiquitin ligase RNF 99.4 1.9E-13 6.4E-18 95.5 3.3 57 61-117 5-68 (133)
44 1jm7_B BARD1, BRCA1-associated 99.4 2.3E-13 7.9E-18 93.9 3.0 62 61-127 20-82 (117)
45 1rmd_A RAG1; V(D)J recombinati 99.3 3.5E-13 1.2E-17 92.7 3.2 49 61-109 21-70 (116)
46 3knv_A TNF receptor-associated 99.3 2.6E-13 8.8E-18 96.8 2.5 52 57-108 25-77 (141)
47 1e4u_A Transcriptional repress 99.3 2.2E-12 7.4E-17 83.0 5.9 50 60-109 8-62 (78)
48 2f42_A STIP1 homology and U-bo 99.3 5.6E-12 1.9E-16 93.1 8.9 66 58-126 101-167 (179)
49 2c2l_A CHIP, carboxy terminus 99.3 1.1E-12 3.9E-17 102.1 5.3 65 58-125 203-268 (281)
50 3dpl_R Ring-box protein 1; ubi 99.3 1.7E-12 5.7E-17 88.3 4.3 47 62-108 36-100 (106)
51 2yu4_A E3 SUMO-protein ligase 99.3 1.3E-12 4.4E-17 86.9 3.5 63 61-126 5-77 (94)
52 1bor_A Transcription factor PM 99.3 5.8E-13 2E-17 80.3 1.4 45 61-108 4-48 (56)
53 2vje_A E3 ubiquitin-protein li 99.3 1.5E-12 5.1E-17 80.6 2.4 49 61-109 6-57 (64)
54 4ic3_A E3 ubiquitin-protein li 99.2 1.2E-12 4E-17 83.4 1.3 44 62-109 23-67 (74)
55 3hcs_A TNF receptor-associated 99.2 2.5E-12 8.6E-17 94.0 3.0 53 57-109 12-65 (170)
56 4ap4_A E3 ubiquitin ligase RNF 99.2 1.9E-12 6.4E-17 90.3 2.0 50 61-110 70-126 (133)
57 2vje_B MDM4 protein; proto-onc 99.2 2.8E-12 9.5E-17 79.2 2.2 48 62-109 6-56 (63)
58 2y1n_A E3 ubiquitin-protein li 99.2 1.3E-11 4.5E-16 100.8 4.5 48 62-109 331-379 (389)
59 3htk_C E3 SUMO-protein ligase 99.1 3.2E-11 1.1E-15 93.4 3.6 66 59-127 177-247 (267)
60 2ecg_A Baculoviral IAP repeat- 99.1 3.8E-11 1.3E-15 76.4 3.4 44 62-109 24-68 (75)
61 2yho_A E3 ubiquitin-protein li 99.1 1.6E-11 5.4E-16 79.1 1.1 45 62-110 17-62 (79)
62 4a0k_B E3 ubiquitin-protein li 99.1 1.1E-11 3.6E-16 85.6 0.2 47 62-108 47-111 (117)
63 2ea5_A Cell growth regulator w 99.1 1.2E-10 4.2E-15 72.8 4.1 45 61-109 13-58 (68)
64 2d8s_A Cellular modulator of i 99.0 2.3E-10 7.8E-15 73.8 4.9 48 61-108 13-69 (80)
65 2ct0_A Non-SMC element 1 homol 98.9 1.3E-09 4.4E-14 69.2 5.5 48 62-109 14-64 (74)
66 3t6p_A Baculoviral IAP repeat- 98.9 3E-10 1E-14 91.8 1.0 45 61-109 293-338 (345)
67 2bay_A PRE-mRNA splicing facto 98.9 8.8E-10 3E-14 67.4 2.3 49 63-111 3-52 (61)
68 1wim_A KIAA0161 protein; ring 98.8 2.3E-09 7.8E-14 70.9 3.0 46 61-106 3-61 (94)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.6 6.2E-08 2.1E-12 58.9 4.4 48 61-108 4-58 (60)
70 3k1l_B Fancl; UBC, ring, RWD, 98.5 1.8E-08 6E-13 80.8 1.6 48 61-108 306-372 (381)
71 3vk6_A E3 ubiquitin-protein li 98.4 1.9E-07 6.4E-12 61.9 3.5 47 65-111 3-51 (101)
72 3nw0_A Non-structural maintena 97.7 4.6E-05 1.6E-09 58.4 5.1 48 63-110 180-230 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 96.9 0.00037 1.3E-08 45.9 2.2 33 62-94 2-38 (101)
74 3m62_A Ubiquitin conjugation f 95.9 0.0082 2.8E-07 54.0 4.9 63 59-124 887-950 (968)
75 2ko5_A Ring finger protein Z; 95.3 0.025 8.4E-07 36.8 4.4 49 61-111 26-75 (99)
76 2cs3_A Protein C14ORF4, MY039 94.6 0.069 2.3E-06 33.7 4.8 35 61-95 13-51 (93)
77 2lri_C Autoimmune regulator; Z 90.5 0.27 9.2E-06 29.7 3.4 46 62-107 11-60 (66)
78 1wil_A KIAA1045 protein; ring 89.3 0.55 1.9E-05 29.8 4.1 44 60-104 12-74 (89)
79 3i2d_A E3 SUMO-protein ligase 87.7 0.39 1.3E-05 38.8 3.3 62 61-125 247-313 (371)
80 4fo9_A E3 SUMO-protein ligase 86.8 0.49 1.7E-05 38.1 3.4 61 62-125 214-279 (360)
81 3u5n_A E3 ubiquitin-protein li 85.3 0.35 1.2E-05 35.7 1.8 46 62-107 6-55 (207)
82 2l5u_A Chromodomain-helicase-D 84.3 0.72 2.5E-05 27.2 2.6 45 60-105 8-57 (61)
83 2zet_C Melanophilin; complex, 83.8 1.7 5.8E-05 30.6 4.8 44 62-106 67-117 (153)
84 1z60_A TFIIH basal transcripti 82.0 1.2 4.2E-05 26.2 2.9 40 64-103 16-58 (59)
85 1zbd_B Rabphilin-3A; G protein 79.8 1.9 6.6E-05 29.6 3.7 31 61-91 53-88 (134)
86 1weo_A Cellulose synthase, cat 79.7 2.9 0.0001 26.7 4.2 47 62-108 15-69 (93)
87 3o36_A Transcription intermedi 79.3 1.1 3.8E-05 32.2 2.5 46 62-107 3-52 (184)
88 2jmo_A Parkin; IBR, E3 ligase, 77.8 0.19 6.5E-06 31.5 -1.8 20 80-101 55-74 (80)
89 2k16_A Transcription initiatio 77.3 0.62 2.1E-05 28.5 0.6 48 61-108 16-70 (75)
90 1joc_A EEA1, early endosomal a 76.3 2.3 8E-05 28.8 3.3 30 63-92 69-102 (125)
91 3ql9_A Transcriptional regulat 76.1 6.3 0.00022 26.9 5.4 45 61-105 55-110 (129)
92 2lbm_A Transcriptional regulat 76.0 6.9 0.00024 27.2 5.7 45 61-105 61-116 (142)
93 1mm2_A MI2-beta; PHD, zinc fin 75.0 0.72 2.5E-05 27.2 0.4 47 61-107 7-57 (61)
94 1wd2_A Ariadne-1 protein homol 73.8 0.35 1.2E-05 28.6 -1.2 34 64-97 7-48 (60)
95 2yw8_A RUN and FYVE domain-con 69.8 2.3 7.8E-05 26.5 1.8 31 62-92 18-52 (82)
96 1f62_A Transcription factor WS 68.9 2.6 9E-05 23.5 1.8 41 65-105 2-49 (51)
97 2l43_A N-teminal domain from h 68.5 2 6.9E-05 27.3 1.4 47 61-107 23-76 (88)
98 1we9_A PHD finger family prote 68.0 1 3.5E-05 26.6 -0.1 47 61-107 4-59 (64)
99 2pv0_B DNA (cytosine-5)-methyl 67.7 9.8 0.00033 30.8 5.6 27 80-106 112-148 (386)
100 1vfy_A Phosphatidylinositol-3- 67.7 3.2 0.00011 25.2 2.1 29 63-91 11-43 (73)
101 1z2q_A LM5-1; membrane protein 66.9 4.2 0.00015 25.4 2.7 32 61-92 19-54 (84)
102 1x4u_A Zinc finger, FYVE domai 66.8 2.6 8.9E-05 26.3 1.7 31 61-91 12-46 (84)
103 1y02_A CARP2, FYVE-ring finger 66.1 0.54 1.9E-05 31.9 -1.8 45 61-105 17-65 (120)
104 2yql_A PHD finger protein 21A; 65.6 0.7 2.4E-05 26.7 -1.2 45 61-105 7-55 (56)
105 1x62_A C-terminal LIM domain p 65.4 5 0.00017 24.3 2.8 40 61-108 13-52 (79)
106 1wev_A Riken cDNA 1110020M19; 65.3 0.56 1.9E-05 29.9 -1.8 47 62-108 15-74 (88)
107 3fyb_A Protein of unknown func 64.0 2.8 9.5E-05 27.3 1.4 12 84-95 41-52 (104)
108 2o35_A Hypothetical protein DU 63.8 2.8 9.7E-05 27.3 1.4 12 84-95 42-53 (105)
109 2ro1_A Transcription intermedi 63.1 1.9 6.4E-05 31.3 0.5 45 63-107 2-50 (189)
110 3a1b_A DNA (cytosine-5)-methyl 62.8 16 0.00053 25.9 5.2 42 63-105 79-133 (159)
111 3t7l_A Zinc finger FYVE domain 61.8 2.9 0.0001 26.5 1.2 31 62-92 19-53 (90)
112 2lv9_A Histone-lysine N-methyl 61.3 2.5 8.5E-05 27.3 0.8 43 62-105 27-75 (98)
113 2fiy_A Protein FDHE homolog; F 61.3 0.81 2.8E-05 36.0 -1.9 46 61-106 180-231 (309)
114 1nyp_A Pinch protein; LIM doma 61.1 4.7 0.00016 23.3 2.0 38 63-108 5-42 (66)
115 2ku3_A Bromodomain-containing 60.9 3.1 0.0001 25.3 1.1 46 61-106 14-66 (71)
116 1fp0_A KAP-1 corepressor; PHD 60.6 3.1 0.00011 26.5 1.1 46 61-106 23-72 (88)
117 1xwh_A Autoimmune regulator; P 60.5 1.9 6.4E-05 25.7 0.1 46 61-107 6-56 (66)
118 1dvp_A HRS, hepatocyte growth 60.1 3.5 0.00012 30.4 1.6 32 61-92 159-194 (220)
119 2cor_A Pinch protein; LIM doma 60.0 8.5 0.00029 23.3 3.1 39 62-108 14-52 (79)
120 3zyq_A Hepatocyte growth facto 59.8 3.9 0.00013 30.5 1.7 32 61-92 162-197 (226)
121 1wem_A Death associated transc 59.7 4.5 0.00015 24.6 1.8 44 63-107 16-71 (76)
122 3mjh_B Early endosome antigen 59.5 1.2 4.2E-05 23.2 -0.8 15 62-76 4-18 (34)
123 2d8v_A Zinc finger FYVE domain 59.5 4.3 0.00015 24.4 1.5 33 61-94 6-39 (67)
124 1wig_A KIAA1808 protein; LIM d 59.3 5.4 0.00018 23.8 2.1 37 64-108 6-42 (73)
125 1x64_A Alpha-actinin-2 associa 58.5 11 0.00036 23.3 3.5 39 62-108 24-62 (89)
126 2dar_A PDZ and LIM domain prot 58.0 3.9 0.00013 25.5 1.3 39 62-108 24-62 (90)
127 1wfk_A Zinc finger, FYVE domai 57.7 5.1 0.00017 25.3 1.8 32 61-92 7-42 (88)
128 1wyh_A SLIM 2, skeletal muscle 57.5 9.4 0.00032 22.3 3.0 38 63-108 5-44 (72)
129 2ysm_A Myeloid/lymphoid or mix 57.0 2.7 9.1E-05 27.6 0.4 44 61-104 5-55 (111)
130 1m3v_A FLIN4, fusion of the LI 56.8 7.2 0.00025 25.8 2.6 46 63-108 32-80 (122)
131 3lqh_A Histone-lysine N-methyl 56.8 2.8 9.5E-05 30.4 0.5 44 64-107 3-64 (183)
132 2d8z_A Four and A half LIM dom 56.4 6.2 0.00021 23.0 2.0 37 64-108 6-42 (70)
133 1x6a_A LIMK-2, LIM domain kina 55.5 6.2 0.00021 23.8 1.9 37 64-108 16-52 (81)
134 2d8x_A Protein pinch; LIM doma 55.1 6.4 0.00022 23.0 1.9 38 63-108 5-42 (70)
135 2yt5_A Metal-response element- 54.2 2.2 7.4E-05 25.2 -0.4 47 61-107 4-62 (66)
136 2gmg_A Hypothetical protein PF 54.2 3.4 0.00012 27.2 0.5 28 75-107 67-94 (105)
137 2e6r_A Jumonji/ARID domain-con 54.0 2 7E-05 27.5 -0.6 47 60-106 13-66 (92)
138 1x4l_A Skeletal muscle LIM-pro 53.4 7.1 0.00024 23.0 1.9 38 63-108 5-46 (72)
139 2puy_A PHD finger protein 21A; 52.5 2.3 7.9E-05 24.8 -0.5 45 62-107 4-53 (60)
140 1x63_A Skeletal muscle LIM-pro 50.3 9.6 0.00033 23.0 2.2 37 64-108 16-54 (82)
141 3v43_A Histone acetyltransfera 50.3 27 0.00091 22.8 4.5 42 63-104 5-62 (112)
142 2dlo_A Thyroid receptor-intera 49.1 6.2 0.00021 23.9 1.1 38 63-108 15-52 (81)
143 1v6g_A Actin binding LIM prote 49.0 6.4 0.00022 23.8 1.2 37 64-108 16-52 (81)
144 3mpx_A FYVE, rhogef and PH dom 48.5 3.7 0.00013 33.1 0.0 32 62-93 374-409 (434)
145 1x68_A FHL5 protein; four-and- 48.2 7.4 0.00025 23.2 1.4 37 64-108 6-46 (76)
146 1wen_A Inhibitor of growth fam 48.1 12 0.00042 22.5 2.3 45 61-107 14-66 (71)
147 2cur_A Skeletal muscle LIM-pro 47.8 6.2 0.00021 23.0 1.0 37 64-108 6-42 (69)
148 2cuq_A Four and A half LIM dom 46.9 9.8 0.00033 22.8 1.8 37 64-108 16-52 (80)
149 4g9i_A Hydrogenase maturation 46.7 9 0.00031 33.8 2.2 49 61-109 104-190 (772)
150 2ct7_A Ring finger protein 31; 46.5 1.2 4.2E-05 28.0 -2.5 28 66-93 28-61 (86)
151 2cu8_A Cysteine-rich protein 2 46.1 7.3 0.00025 23.2 1.1 38 63-108 9-47 (76)
152 3ttc_A HYPF, transcriptional r 44.8 9.2 0.00031 33.2 1.9 47 61-107 15-99 (657)
153 2kgg_A Histone demethylase jar 44.2 12 0.00042 20.9 1.8 40 65-104 4-52 (52)
154 1x4k_A Skeletal muscle LIM-pro 44.0 8.9 0.0003 22.4 1.2 37 64-108 6-44 (72)
155 1wep_A PHF8; structural genomi 43.8 28 0.00095 21.1 3.6 45 62-107 11-64 (79)
156 2vpb_A Hpygo1, pygopus homolog 43.8 13 0.00044 22.0 1.9 31 61-91 6-41 (65)
157 2xjy_A Rhombotin-2; oncoprotei 43.3 12 0.00042 24.7 2.0 47 62-108 28-77 (131)
158 1weu_A Inhibitor of growth fam 43.1 9.6 0.00033 24.3 1.3 45 61-107 34-86 (91)
159 1wew_A DNA-binding family prot 42.4 10 0.00035 23.2 1.4 45 62-107 15-73 (78)
160 3o70_A PHD finger protein 13; 41.9 4.5 0.00015 24.3 -0.4 44 61-105 17-66 (68)
161 1x3h_A Leupaxin; paxillin fami 41.5 9.6 0.00033 22.8 1.1 37 64-108 16-52 (80)
162 3vth_A Hydrogenase maturation 40.9 11 0.00037 33.3 1.7 48 61-108 109-194 (761)
163 3shb_A E3 ubiquitin-protein li 40.9 4.4 0.00015 25.0 -0.5 41 65-105 28-76 (77)
164 1rut_X Flinc4, fusion protein 40.8 8.5 0.00029 27.4 0.9 47 62-108 31-80 (188)
165 2ehe_A Four and A half LIM dom 40.6 15 0.00053 22.0 2.0 37 64-108 16-54 (82)
166 2ri7_A Nucleosome-remodeling f 40.4 5.1 0.00017 28.3 -0.3 46 61-107 6-60 (174)
167 1iml_A CRIP, cysteine rich int 40.0 9.9 0.00034 22.6 1.0 42 62-105 26-69 (76)
168 2l3k_A Rhombotin-2, linker, LI 39.4 15 0.0005 24.2 1.9 33 62-94 35-69 (123)
169 1g47_A Pinch protein; LIM doma 38.3 19 0.00064 21.2 2.1 40 62-109 10-51 (77)
170 3asl_A E3 ubiquitin-protein li 38.2 7.1 0.00024 23.5 0.1 41 65-105 20-68 (70)
171 3ask_A E3 ubiquitin-protein li 37.6 7.1 0.00024 29.3 0.0 41 65-105 176-224 (226)
172 2egq_A FHL1 protein; LIM domai 37.3 12 0.00042 22.1 1.1 37 64-108 16-57 (77)
173 2l4z_A DNA endonuclease RBBP8, 37.0 12 0.0004 24.9 1.1 38 63-108 61-99 (123)
174 2jrp_A Putative cytoplasmic pr 36.7 1.8 6.1E-05 27.2 -2.9 39 64-107 3-41 (81)
175 2xqn_T Testin, TESS; metal-bin 36.0 27 0.00093 22.7 2.8 45 62-108 29-74 (126)
176 2dj7_A Actin-binding LIM prote 35.9 23 0.00079 21.3 2.3 40 61-108 13-53 (80)
177 2e6s_A E3 ubiquitin-protein li 35.1 6.5 0.00022 24.2 -0.4 41 65-105 28-76 (77)
178 1j2o_A FLIN2, fusion of rhombo 34.7 22 0.00074 23.0 2.1 34 62-95 29-65 (114)
179 2kwj_A Zinc finger protein DPF 34.2 21 0.00072 23.4 2.0 39 65-103 3-58 (114)
180 2iyb_E Testin, TESS, TES; LIM 33.5 13 0.00044 21.4 0.7 36 65-108 4-43 (65)
181 2rgt_A Fusion of LIM/homeobox 33.3 42 0.0014 23.2 3.6 44 62-107 32-75 (169)
182 2co8_A NEDD9 interacting prote 32.6 45 0.0016 20.0 3.3 40 61-108 13-53 (82)
183 1x61_A Thyroid receptor intera 32.1 59 0.002 18.6 3.7 35 65-107 7-43 (72)
184 3c6w_A P28ING5, inhibitor of g 30.7 6 0.0002 23.0 -1.1 43 61-105 7-57 (59)
185 2ffw_A Midline-1; B-BOX, ring 29.6 59 0.002 19.6 3.4 32 62-93 29-63 (78)
186 3c5k_A HD6, histone deacetylas 28.0 23 0.0008 23.2 1.4 25 63-87 24-48 (109)
187 2jne_A Hypothetical protein YF 27.5 3.9 0.00013 26.6 -2.5 40 64-108 33-72 (101)
188 3f6q_B LIM and senescent cell 27.3 21 0.00071 20.5 0.9 40 62-109 10-51 (72)
189 2jtn_A LIM domain-binding prot 27.2 39 0.0013 23.7 2.6 43 64-108 88-130 (182)
190 2d8y_A Eplin protein; LIM doma 27.0 66 0.0022 19.6 3.4 39 62-108 14-53 (91)
191 1loi_A Cyclic 3',5'-AMP specif 26.2 3.8 0.00013 19.3 -2.0 11 85-95 7-17 (26)
192 2cup_A Skeletal muscle LIM-pro 26.1 43 0.0015 20.7 2.4 45 62-108 32-77 (101)
193 2vnf_A ING 4, P29ING4, inhibit 23.8 9 0.00031 22.2 -1.2 42 62-105 9-58 (60)
194 1wfl_A Zinc finger protein 216 23.4 88 0.003 19.0 3.2 27 62-88 24-51 (74)
195 1wff_A Riken cDNA 2810002D23 p 23.2 45 0.0015 20.9 1.9 27 62-88 24-52 (85)
196 2lcq_A Putative toxin VAPC6; P 22.6 23 0.00078 24.6 0.5 25 79-109 136-160 (165)
197 4gne_A Histone-lysine N-methyl 22.6 61 0.0021 21.1 2.6 44 61-107 13-63 (107)
198 2jmi_A Protein YNG1, ING1 homo 21.8 16 0.00053 23.3 -0.4 43 61-105 24-75 (90)
199 1a7i_A QCRP2 (LIM1); LIM domai 21.6 16 0.00054 21.9 -0.4 38 63-108 7-45 (81)
No 1
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.59 E-value=1.6e-15 Score=97.32 Aligned_cols=65 Identities=17% Similarity=0.295 Sum_probs=54.4
Q ss_pred CCCCCeeeccccccccceecCCCCcccHHhHHHHhhc-CCCCccccccccccCCCCccccCChhHHHHh
Q 031282 60 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 127 (162)
Q Consensus 60 ~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~ 127 (162)
..+++.|+||++.+.+|+.++|||.||..|+..|+.. ..+||+||.++.. ..+..+..+..+++.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~---~~l~~n~~l~~~i~~ 70 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH---AGLTPNYVLKSLIAL 70 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS---CCCEECTTTHHHHHH
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh---hhCccCHHHHHHHHH
Confidence 4678999999999999999999999999999999986 7889999999853 346666666665543
No 2
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.58 E-value=9.6e-16 Score=104.45 Aligned_cols=91 Identities=19% Similarity=0.363 Sum_probs=66.5
Q ss_pred CCCCCeeeccccccccceec-CCCCcccHHhHHHHhhcCCCCccccccccccCC-CCccccCChhHHHHhhh--hcHHHH
Q 031282 60 IEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS-GDLWIYTSEDDIVDLAS--ISRENL 135 (162)
Q Consensus 60 ~~~~~~C~IC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~ 135 (162)
..+++.|+||++.+.+|+.+ +|||.||..|+..|+.....||.||..+....+ ..+..+..+.++++... ...+++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~e~ 91 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGLFKNEM 91 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTTHHHHHH
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhhhHHHHHH
Confidence 35678999999999999997 999999999999999988999999999864211 13445555555554422 334556
Q ss_pred HHHHHHHhcCCCCCC
Q 031282 136 KRLFMYIDKLPFITP 150 (162)
Q Consensus 136 ~~l~~~~~~~p~~~p 150 (162)
.+-..++.+.+...|
T Consensus 92 ~~~~~~~~~~~~~~p 106 (108)
T 2ckl_A 92 KRRRDFYAAHPSADA 106 (108)
T ss_dssp HHHHHHHHHSCC---
T ss_pred HhHHHHHHhCccccC
Confidence 666788888887665
No 3
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.57 E-value=2e-15 Score=107.21 Aligned_cols=48 Identities=35% Similarity=0.872 Sum_probs=44.8
Q ss_pred CCCeeeccccccccceecCCCCcccHHhHHHHhhcCCCCccccccccc
Q 031282 62 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 109 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 109 (162)
+++.|+||++.+.+|+.++|||.||..|+..|+....+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 467899999999999999999999999999999999999999999853
No 4
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.57 E-value=3e-15 Score=98.98 Aligned_cols=68 Identities=25% Similarity=0.409 Sum_probs=53.2
Q ss_pred ccCCCCCeeeccccccccceecC-CCCcccHHhHHHHhhc--CCCCccccccccccCCCCccccCChhHHHHh
Q 031282 58 IDIEREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRAR--SQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 127 (162)
Q Consensus 58 ~~~~~~~~C~IC~~~~~~~~~~~-CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~ 127 (162)
....+++.|+||++.+.+|+.++ |||.||..|+..|+.. ...||+||..+. ....+..+..+.++++.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~--~~~~~~~n~~l~~~i~~ 78 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV--SPDALIANKFLRQAVNN 78 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC--CTTSCEECHHHHHHHHH
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC--CccccCcCHHHHHHHHH
Confidence 34567899999999999999999 9999999999999864 368999999874 23345555555555544
No 5
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.5e-15 Score=94.51 Aligned_cols=54 Identities=20% Similarity=0.451 Sum_probs=47.6
Q ss_pred ccCCCCCeeeccccccccceec-CCCCcccHHhHHHHhhcCCCCccccccccccC
Q 031282 58 IDIEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 111 (162)
Q Consensus 58 ~~~~~~~~C~IC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 111 (162)
....+...|+||++.+.+|+.+ +|||.||..|+..|+.....||+||..+....
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3446778999999999999886 99999999999999998899999999996433
No 6
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.56 E-value=2e-15 Score=95.00 Aligned_cols=52 Identities=27% Similarity=0.724 Sum_probs=46.5
Q ss_pred CCCCeeeccccccccc-------eecCCCCcccHHhHHHHhhcCCCCccccccccccCC
Q 031282 61 EREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 112 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~-------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 112 (162)
.++..|+||++.+.++ +.++|||.||..|+.+|+.....||+||.++.....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 5678999999999987 889999999999999999988999999999975443
No 7
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-15 Score=97.73 Aligned_cols=51 Identities=33% Similarity=0.707 Sum_probs=45.7
Q ss_pred cCCCCCeeeccccccccceecCCCCcccHHhHHHHhhc-------CCCCccccccccc
Q 031282 59 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-------SQSCPFCRDSLRR 109 (162)
Q Consensus 59 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP~Cr~~~~~ 109 (162)
...++..|+||++.+.+|+.++|||.||..|+..|+.. ...||+||..+..
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34678999999999999999999999999999999875 6789999999963
No 8
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.53 E-value=8.8e-15 Score=93.17 Aligned_cols=51 Identities=31% Similarity=0.570 Sum_probs=45.1
Q ss_pred ccCCCCCeeeccccccccceecC-CCCcccHHhHHHHhhcC--CCCcccccccc
Q 031282 58 IDIEREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRARS--QSCPFCRDSLR 108 (162)
Q Consensus 58 ~~~~~~~~C~IC~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 108 (162)
....+++.|+||++.+.+|+.++ |||.||..|+..|+... ..||+||.++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 34467889999999999999999 99999999999999754 68999999764
No 9
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=9.8e-15 Score=94.41 Aligned_cols=49 Identities=22% Similarity=0.451 Sum_probs=45.6
Q ss_pred CCCCCeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 60 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 60 ~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
....+.|+||++.+.+|+.++|||.||..|+..|+.....||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3567899999999999999999999999999999998899999999985
No 10
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=6.9e-15 Score=95.38 Aligned_cols=62 Identities=34% Similarity=0.589 Sum_probs=50.4
Q ss_pred cCCCCCeeeccccccccceecCCCCcccHHhHHHHhhc------CCCCccccccccccCCCCccccCChhH
Q 031282 59 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRVNSGDLWIYTSEDD 123 (162)
Q Consensus 59 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~~~~~~~~~~ 123 (162)
...++..|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+.. ..+..+..+.+
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~---~~~~~n~~l~~ 82 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF---GNLKPNLHVAN 82 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT---TCCEECSCCCS
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH---HhCCcCHHHHH
Confidence 34677899999999999999999999999999999876 6789999999863 23444444433
No 11
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.52 E-value=2.5e-15 Score=101.23 Aligned_cols=64 Identities=27% Similarity=0.634 Sum_probs=51.5
Q ss_pred CCCCeeecccccccccee-cCCCCcccHHhHHHHhhcC-CCCccccccccccCCCCccccCChhHHHHh
Q 031282 61 EREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARS-QSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 127 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~ 127 (162)
.+++.|+||++.+.+|+. ++|||.||..||..|+... ..||+||.++.. ..+..+..+.++.+.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~---~~l~~~~~~~~i~~~ 85 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL---RELVNCRWAEEVTQQ 85 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG---GGCEECTTHHHHHHH
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH---HHhHhhHHHHHHHHH
Confidence 457789999999999999 9999999999999999876 699999999953 334445555554433
No 12
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=95.15 Aligned_cols=59 Identities=31% Similarity=0.615 Sum_probs=48.7
Q ss_pred cccCCCCCeeecccccccc----ceecCCCCcccHHhHHHHhhcC---CCCccccccccccCCCCc
Q 031282 57 EIDIEREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARS---QSCPFCRDSLRRVNSGDL 115 (162)
Q Consensus 57 ~~~~~~~~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~~ 115 (162)
.....+...|+||++.+.+ |+.++|||.||..|+..|+... ..||+||..+.......+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQL 74 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTS
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHH
Confidence 3445678899999999998 9999999999999999999865 789999999864433333
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=6.6e-15 Score=92.94 Aligned_cols=50 Identities=28% Similarity=0.692 Sum_probs=45.9
Q ss_pred CCCCCeeeccccccccceecCCCCcccHHhHHHHhhcCCCCccccccccc
Q 031282 60 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 109 (162)
Q Consensus 60 ~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 109 (162)
..+...|+||++.+.+++.++|||.||..|+..|+.....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 35678999999999999999999999999999999988999999999863
No 14
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=90.30 Aligned_cols=51 Identities=24% Similarity=0.663 Sum_probs=45.5
Q ss_pred cCCCCCeeeccccccccceecCCCCcccHHhHHHHhh-cCCCCccccccccc
Q 031282 59 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR 109 (162)
Q Consensus 59 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 109 (162)
...+...|+||++.+.+|+.++|||.||..|+..|+. ....||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3467889999999999999999999999999999994 56789999999853
No 15
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=91.48 Aligned_cols=51 Identities=35% Similarity=0.834 Sum_probs=45.4
Q ss_pred cCCCCCeeeccccccccceecCCCCcccHHhHHHHhh---cCCCCccccccccc
Q 031282 59 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLRR 109 (162)
Q Consensus 59 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~~~~ 109 (162)
...+...|+||++.+.+|+.++|||.||..|+..|+. ....||+||.++..
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3467789999999999999999999999999999986 46689999999863
No 16
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.51 E-value=7.1e-15 Score=102.47 Aligned_cols=64 Identities=25% Similarity=0.515 Sum_probs=51.1
Q ss_pred CCCCeeeccccccccceecCCCCcccHHhHHHHhhc-CCCCccccccccccCCCCccccCChhHHHH
Q 031282 61 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVNSGDLWIYTSEDDIVD 126 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~ 126 (162)
.+++.|+||++.+.+|+.++|||.||..|+..|+.. ...||+||.++.. ...+..+..+.++++
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~--~~~~~~n~~l~~~i~ 114 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR--SYAMQVNQPLQTVLN 114 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT--TCCCCCCHHHHHHHH
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC--CCCCCCCHHHHHHHH
Confidence 456899999999999999999999999999999874 4589999999963 134555555555543
No 17
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.7e-15 Score=94.89 Aligned_cols=51 Identities=35% Similarity=0.798 Sum_probs=46.0
Q ss_pred cCCCCCeeeccccccccceecCCCCcccHHhHHHHhhc------CCCCccccccccc
Q 031282 59 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRR 109 (162)
Q Consensus 59 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~ 109 (162)
...+...|+||++.+.+|+.++|||.||..|+..|+.. ...||+||..+..
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34677899999999999999999999999999999876 7889999999964
No 18
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=9.5e-15 Score=91.23 Aligned_cols=50 Identities=28% Similarity=0.752 Sum_probs=45.0
Q ss_pred cCCCCCeeeccccccccc-------eecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 59 DIEREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 59 ~~~~~~~C~IC~~~~~~~-------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
...+...|+||++.+.++ +.++|||.||..|+..|+.....||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 345678999999999987 78999999999999999998899999999885
No 19
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.51 E-value=1.8e-14 Score=94.32 Aligned_cols=66 Identities=15% Similarity=0.008 Sum_probs=54.8
Q ss_pred cCCCCCeeeccccccccceecCCCCcccHHhHHHHhhcCCCCccccccccccCCCCccccCChhHHHHh
Q 031282 59 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 127 (162)
Q Consensus 59 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~ 127 (162)
...+.+.|+||++.+.+|+.++|||+||..||..|+....+||+|+.++.. ..+..|..+..+++.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~---~~l~pn~~L~~~i~~ 75 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE---SMLEPVPELKEQIQA 75 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG---GGCEECHHHHHHHHH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh---HhcchHHHHHHHHHH
Confidence 346789999999999999999999999999999999888899999999863 346666655554443
No 20
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.50 E-value=6e-15 Score=90.85 Aligned_cols=48 Identities=29% Similarity=0.796 Sum_probs=43.7
Q ss_pred CCCeeeccccccccc-------eecCCCCcccHHhHHHHhhcCCCCccccccccc
Q 031282 62 REEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 109 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~-------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 109 (162)
++..|+||++.+.++ +.++|||.||..|+.+|+.....||+||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 467899999999876 789999999999999999999999999999864
No 21
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=3e-14 Score=89.24 Aligned_cols=50 Identities=30% Similarity=0.711 Sum_probs=43.6
Q ss_pred CCCCeeeccccccc---cceecCCCCcccHHhHHHHhhcCCCCcccccccccc
Q 031282 61 EREEECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 110 (162)
Q Consensus 61 ~~~~~C~IC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 110 (162)
..+..|+||++.+. .++.++|||.||..|+..|+....+||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 56678999999885 356799999999999999999889999999998643
No 22
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.48 E-value=1.2e-14 Score=97.49 Aligned_cols=64 Identities=27% Similarity=0.577 Sum_probs=52.4
Q ss_pred CCCCeeeccccccccceec-CCCCcccHHhHHHHhhcCCCCccccccccccCCCCccccCChhHHHHh
Q 031282 61 EREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 127 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~ 127 (162)
.+...|+||++.+.+|+.+ +|||.||..|+..|+.....||.||..+.. ..+..+..+.++++.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~---~~l~~n~~l~~~i~~ 84 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE---PDLKNNRILDELVKS 84 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG---GGCEECHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh---hhCCcCHHHHHHHHH
Confidence 3567899999999999887 999999999999999988999999999864 335555555555554
No 23
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.48 E-value=2e-14 Score=86.12 Aligned_cols=48 Identities=25% Similarity=0.681 Sum_probs=42.4
Q ss_pred CCCCeeecccccccc---ceecC-CCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 61 EREEECGICLEICCK---IVLPD-CNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
.++..|+||++.+.+ ++.++ |||.||..|+.+|+....+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456789999999986 56676 9999999999999999999999999773
No 24
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.48 E-value=3.7e-14 Score=95.54 Aligned_cols=65 Identities=15% Similarity=0.025 Sum_probs=54.2
Q ss_pred cCCCCCeeeccccccccceecCCCCcccHHhHHHHhhcCCCCccccccccccCCCCccccCChhHHHH
Q 031282 59 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVD 126 (162)
Q Consensus 59 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~ 126 (162)
...+.+.|+||++.+.+|+.++|||+||..||..|+....+||+|+.++.. ..+..|..+..+++
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~---~~L~pn~~Lk~~I~ 89 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE---SMLEPVPELKEQIQ 89 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT---TSSEECHHHHHHHH
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh---hhceECHHHHHHHH
Confidence 345789999999999999999999999999999999888899999999863 34666655555443
No 25
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.46 E-value=5.6e-14 Score=90.05 Aligned_cols=52 Identities=33% Similarity=0.609 Sum_probs=44.7
Q ss_pred CCCCCeeeccccccccc---eecCCCCcccHHhHHHHhhcCCCCccccccccccC
Q 031282 60 IEREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 111 (162)
Q Consensus 60 ~~~~~~C~IC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 111 (162)
..+...|+||++.+.++ ..++|||.||..|+..|+.....||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 35678999999999855 45799999999999999998899999999996433
No 26
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=6.9e-14 Score=86.09 Aligned_cols=45 Identities=36% Similarity=0.841 Sum_probs=40.5
Q ss_pred cCCCCCeeeccccccccceecCCCCcccHHhHHHHhh---cCCCCccc
Q 031282 59 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFC 103 (162)
Q Consensus 59 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~---~~~~CP~C 103 (162)
...++..|+||++.+.+|+.++|||.||..|+..|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4467889999999999999999999999999999997 45689998
No 27
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.46 E-value=5.8e-14 Score=92.87 Aligned_cols=49 Identities=29% Similarity=0.621 Sum_probs=43.9
Q ss_pred CCCCCeeecccccccc---ceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 60 IEREEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 60 ~~~~~~C~IC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
..++..|+||++.+.. ++.++|||.||..|+..|+....+||+||..+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 3567899999999886 677899999999999999999999999999885
No 28
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.2e-14 Score=89.34 Aligned_cols=49 Identities=35% Similarity=0.950 Sum_probs=45.0
Q ss_pred CCCCCeeeccccccccceecCCCCcccHHhHHHHhhcCCCCccccccccc
Q 031282 60 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 109 (162)
Q Consensus 60 ~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 109 (162)
..+...|+||++.+.+ +.++|||.||..|+..|+.....||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 4567899999999999 889999999999999999999999999999964
No 29
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.46 E-value=8.1e-14 Score=93.55 Aligned_cols=65 Identities=17% Similarity=0.122 Sum_probs=54.0
Q ss_pred cCCCCCeeeccccccccceecCCC-CcccHHhHHHHhhcCCCCccccccccccCCCCccccCChhHHHH
Q 031282 59 DIEREEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVD 126 (162)
Q Consensus 59 ~~~~~~~C~IC~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~ 126 (162)
...+++.|+||++.+.+||.++|| |+||..||..|+....+||+||.++.. ..+..|..+..+++
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~---~~L~pn~~Lk~~I~ 83 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM---DQIRPNTELKEKIQ 83 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT---TTSEECHHHHHHHH
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh---hhceEcHHHHHHHH
Confidence 345789999999999999999999 999999999999888899999999963 34666655555443
No 30
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.45 E-value=3.8e-14 Score=84.80 Aligned_cols=48 Identities=25% Similarity=0.581 Sum_probs=42.5
Q ss_pred CCCCeeecccccccc----ceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 61 EREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
.++..|+||++.+.+ ++.++|||.||..|+.+|+.....||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 356789999999865 677999999999999999998899999999874
No 31
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.45 E-value=2.2e-13 Score=92.83 Aligned_cols=63 Identities=27% Similarity=0.602 Sum_probs=50.0
Q ss_pred CCCeeeccccccccceecCCCCcccHHhHHHHhhcC---CCCccccccccccCCCCccccCChhHHHHh
Q 031282 62 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS---QSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 127 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~ 127 (162)
+...|+||++.+.+|+.++|||.||..|+..|+... ..||+||.++.. ..+..+..+..+++.
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~---~~~~~~~~l~~~~~~ 85 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK---RSLQESTRFSQLVEE 85 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT---TTCBCCCSSSHHHHH
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH---hhcCccHHHHHHHHH
Confidence 456899999999999999999999999999998854 489999999864 334455555554444
No 32
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=9.6e-14 Score=88.08 Aligned_cols=51 Identities=24% Similarity=0.602 Sum_probs=43.9
Q ss_pred cCCCCCeeecccccccccee---cCCCCcccHHhHHHHhhcCCCCccccccccc
Q 031282 59 DIEREEECGICLEICCKIVL---PDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 109 (162)
Q Consensus 59 ~~~~~~~C~IC~~~~~~~~~---~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 109 (162)
....+..|+||++.+.++.. ++|||.||..|+..|+.....||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 34567899999999986544 4999999999999999988899999999864
No 33
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=4.2e-14 Score=90.11 Aligned_cols=48 Identities=23% Similarity=0.639 Sum_probs=43.5
Q ss_pred CCCCeeeccccccccc---eecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 61 EREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
.++..|+||++.+..+ +.++|||.||..|+..|+.....||+||.++.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 4668999999999876 67899999999999999998999999999885
No 34
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.44 E-value=5.2e-14 Score=101.39 Aligned_cols=65 Identities=26% Similarity=0.479 Sum_probs=51.9
Q ss_pred CCCCeeeccccccccceecCCCCcccHHhHHHHhhcC-CCCccccccccccCCCCccccCChhHHHHh
Q 031282 61 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 127 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~ 127 (162)
.+.+.|+||++.+.+|+.++|||.||..|+..|+... ..||+||.++... ..+..+..+.++++.
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~--~~l~~n~~l~~lv~~ 141 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN--YIMIPNEILQTLLDL 141 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT--CCCCBCHHHHHHHHH
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC--CCCCCCHHHHHHHHH
Confidence 4568999999999999999999999999999998865 4899999999643 134555555555543
No 35
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.44 E-value=4.8e-14 Score=88.02 Aligned_cols=48 Identities=29% Similarity=0.783 Sum_probs=43.7
Q ss_pred CCCeeeccccccccc-eecCCCCcccHHhHHHHhhcCCCCccccccccc
Q 031282 62 REEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 109 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 109 (162)
.+..|+||++.+.++ +.++|||.||..|+..|+.....||+||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 467899999999986 779999999999999999988999999999863
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.43 E-value=1.8e-14 Score=99.09 Aligned_cols=49 Identities=39% Similarity=0.903 Sum_probs=44.4
Q ss_pred CCCCCeeeccccccccceecCCCCcccHHhHHHHhhc-CCCCcccccccc
Q 031282 60 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLR 108 (162)
Q Consensus 60 ~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 108 (162)
..+++.|+||++.+.+|+.++|||.||..|+..|+.. ...||+||..+.
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3457899999999999999999999999999999875 678999999986
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=82.91 Aligned_cols=45 Identities=33% Similarity=0.959 Sum_probs=39.7
Q ss_pred cCCCCCeeeccccccccceecCCCCcccHHhHHHHh---hcCCCCccc
Q 031282 59 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWR---ARSQSCPFC 103 (162)
Q Consensus 59 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~---~~~~~CP~C 103 (162)
...+...|+||++.+.+|+.++|||.||..|+..|+ .....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345678999999999999999999999999999994 456789998
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.41 E-value=9.9e-14 Score=85.95 Aligned_cols=49 Identities=22% Similarity=0.575 Sum_probs=41.3
Q ss_pred CCCeeecccc-ccccc----eecCCCCcccHHhHHHHhh-cCCCCcccccccccc
Q 031282 62 REEECGICLE-ICCKI----VLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRV 110 (162)
Q Consensus 62 ~~~~C~IC~~-~~~~~----~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 110 (162)
++..|+||++ .+.++ +.++|||.||..|+..|+. ....||+||.++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 4578999999 88887 4689999999999999865 456899999999643
No 39
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.40 E-value=1.3e-13 Score=95.39 Aligned_cols=52 Identities=27% Similarity=0.517 Sum_probs=46.1
Q ss_pred ccCCCCCeeeccccccccceecCCCCcccHHhHHHHhhcCC-CCccccccccc
Q 031282 58 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQ-SCPFCRDSLRR 109 (162)
Q Consensus 58 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 109 (162)
....+.+.|+||++.+.+|+.++|||.||..|+..|+.... .||+||.++..
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 44567889999999999999999999999999999987654 99999999863
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.39 E-value=6.5e-14 Score=102.09 Aligned_cols=65 Identities=25% Similarity=0.523 Sum_probs=51.8
Q ss_pred CCCCeeeccccccccceec-CCCCcccHHhHHHHhhc-CCCCccccccccccCCCCccccCChhHHHHh
Q 031282 61 EREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 127 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~ 127 (162)
.+.+.|+||++.+.+|+.+ +|||.||..|+..|+.. ...||+||.++.. ...+..+..+.++++.
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~--~~~l~~~~~l~~~i~~ 118 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS--KRSLRPDPNFDALISK 118 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS--GGGEEECHHHHHHHHH
T ss_pred CCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC--cccCCcCHHHHHHHHH
Confidence 3567999999999999887 99999999999999986 7889999999852 2235555555555544
No 41
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.39 E-value=2.5e-13 Score=93.07 Aligned_cols=48 Identities=29% Similarity=0.626 Sum_probs=40.8
Q ss_pred CCCeeeccccccccce------------------ecCCCCcccHHhHHHHh-----hcCCCCccccccccc
Q 031282 62 REEECGICLEICCKIV------------------LPDCNHSMCMRCYRNWR-----ARSQSCPFCRDSLRR 109 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~------------------~~~CgH~fc~~Ci~~~~-----~~~~~CP~Cr~~~~~ 109 (162)
.+..|+||++.+.++. .++|||.||..||..|+ ....+||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999997653 68999999999999999 456789999998853
No 42
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.5e-13 Score=87.96 Aligned_cols=47 Identities=28% Similarity=0.748 Sum_probs=40.4
Q ss_pred CCCeeecccccccc--------------cee-cCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 62 REEECGICLEICCK--------------IVL-PDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 62 ~~~~C~IC~~~~~~--------------~~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
++..|+||++.+.+ ++. ++|||.||..||.+|+..+.+||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 56779999999865 334 469999999999999999999999999885
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.37 E-value=1.9e-13 Score=95.48 Aligned_cols=57 Identities=26% Similarity=0.712 Sum_probs=48.6
Q ss_pred CCCCeeeccccccccc-------eecCCCCcccHHhHHHHhhcCCCCccccccccccCCCCccc
Q 031282 61 EREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWI 117 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~-------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 117 (162)
.++..|+||++.+.++ +.++|||.||..|+.+|+....+||+||..+.......+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccccc
Confidence 4678999999999988 88999999999999999999999999999997544433333
No 44
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.36 E-value=2.3e-13 Score=93.91 Aligned_cols=62 Identities=27% Similarity=0.552 Sum_probs=50.2
Q ss_pred CCCCeeeccccccccceec-CCCCcccHHhHHHHhhcCCCCccccccccccCCCCccccCChhHHHHh
Q 031282 61 EREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 127 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~ 127 (162)
.+.+.|+||++.+.+|+.+ +|||.||..|+..|+. ..||+||.++.. ..+..+..+.++++.
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~---~~~~~n~~l~~l~~~ 82 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI---QDLKINRQLDSMIQL 82 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC---SSCCCCHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc---ccccccHHHHHHHHH
Confidence 3568899999999999998 9999999999999987 789999999853 345555555555544
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.34 E-value=3.5e-13 Score=92.69 Aligned_cols=49 Identities=27% Similarity=0.517 Sum_probs=44.6
Q ss_pred CCCCeeeccccccccceecCCCCcccHHhHHHHhhc-CCCCccccccccc
Q 031282 61 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 109 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 109 (162)
.+++.|+||++.+.+|+.++|||.||..|+..|+.. ...||+||.++..
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 356899999999999999999999999999999986 7789999999864
No 46
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.34 E-value=2.6e-13 Score=96.80 Aligned_cols=52 Identities=19% Similarity=0.456 Sum_probs=45.9
Q ss_pred cccCCCCCeeeccccccccceecCCCCcccHHhHHHHhhcC-CCCcccccccc
Q 031282 57 EIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLR 108 (162)
Q Consensus 57 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 108 (162)
.....+.+.|+||++.+.+|+.++|||.||..||..|+... ..||+||.++.
T Consensus 25 ~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred hccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 34557889999999999999999999999999999998755 48999999874
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.33 E-value=2.2e-12 Score=83.05 Aligned_cols=50 Identities=28% Similarity=0.636 Sum_probs=40.9
Q ss_pred CCCCCeeeccccccc--cceecC--CCCcccHHhHHHHh-hcCCCCccccccccc
Q 031282 60 IEREEECGICLEICC--KIVLPD--CNHSMCMRCYRNWR-ARSQSCPFCRDSLRR 109 (162)
Q Consensus 60 ~~~~~~C~IC~~~~~--~~~~~~--CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~~ 109 (162)
..++..|+||++.+. ++..++ |||.||..|+..++ .....||.||.++..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 467889999999885 445555 99999999999965 456789999999964
No 48
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.33 E-value=5.6e-12 Score=93.06 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=52.8
Q ss_pred ccCCCCCeeeccccccccceecCCCCcccHHhHHHHhhc-CCCCccccccccccCCCCccccCChhHHHH
Q 031282 58 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVNSGDLWIYTSEDDIVD 126 (162)
Q Consensus 58 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~ 126 (162)
....+.+.||||++.+.+||.++|||+||..||..|+.. +.+||+|+.++.. ..+.+|..+..+++
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~---~~L~pN~~Lk~~Ie 167 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ---DQLIPNLAMKEVID 167 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG---GGCEECHHHHHHHH
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh---hhCcchHHHHHHHH
Confidence 344678999999999999999999999999999999875 4579999999863 24555555555443
No 49
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.32 E-value=1.1e-12 Score=102.05 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=51.5
Q ss_pred ccCCCCCeeeccccccccceecCCCCcccHHhHHHHhhc-CCCCccccccccccCCCCccccCChhHHH
Q 031282 58 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVNSGDLWIYTSEDDIV 125 (162)
Q Consensus 58 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~ 125 (162)
......+.|+||++.+.+||+++|||+||..||..|+.. ..+||+||.++.. ..+..|..+..++
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~---~~l~~n~~l~~~i 268 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ---EQLIPNLAMKEVI 268 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG---GGCEECHHHHHHH
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch---hcCcccHHHHHHH
Confidence 344578999999999999999999999999999999875 4459999999953 2355555554443
No 50
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.30 E-value=1.7e-12 Score=88.29 Aligned_cols=47 Identities=23% Similarity=0.613 Sum_probs=41.4
Q ss_pred CCCeeeccccccccc------------------eecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 62 REEECGICLEICCKI------------------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~------------------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
++..|+||++.+.++ +.++|||.||..||.+|+....+||+||.++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 567899999998854 44799999999999999999999999999874
No 51
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-12 Score=86.91 Aligned_cols=63 Identities=21% Similarity=0.300 Sum_probs=48.7
Q ss_pred CCCCeeeccccccccceecC-CCCcccHHhHHHHhhcC------CCCcc--cccc-ccccCCCCccccCChhHHHH
Q 031282 61 EREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRARS------QSCPF--CRDS-LRRVNSGDLWIYTSEDDIVD 126 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~------~~CP~--Cr~~-~~~~~~~~~~~~~~~~~~~~ 126 (162)
.+.+.|+||++.+.+||.++ |||+||..||..|+... .+||+ |+.. +.. ..+..|..+..+++
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~---~~L~pn~~L~~~I~ 77 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK---SDLIQDEALRRAIE 77 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG---GGEEECHHHHHHHH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH---hhCcCCHHHHHHHH
Confidence 56789999999999999995 99999999999988743 58999 9876 542 33555555544443
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=5.8e-13 Score=80.29 Aligned_cols=45 Identities=22% Similarity=0.490 Sum_probs=40.5
Q ss_pred CCCCeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 61 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
.+.+.|+||++.+.+|+.++|||.||..|+..| ...||+||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 467889999999999999999999999998774 668999999885
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.26 E-value=1.5e-12 Score=80.63 Aligned_cols=49 Identities=24% Similarity=0.604 Sum_probs=43.9
Q ss_pred CCCCeeeccccccccceec--CCCCc-ccHHhHHHHhhcCCCCccccccccc
Q 031282 61 EREEECGICLEICCKIVLP--DCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 109 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~--~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 109 (162)
.++..|.||++...+++.+ +|||. ||..|+..|......||+||.++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 3567899999999999877 99999 8999999999888899999999853
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.25 E-value=1.2e-12 Score=83.37 Aligned_cols=44 Identities=30% Similarity=0.745 Sum_probs=40.4
Q ss_pred CCCeeeccccccccceecCCCCc-ccHHhHHHHhhcCCCCccccccccc
Q 031282 62 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 109 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 109 (162)
++..|+||++.+.+++.++|||. ||..|+..| ..||+||.++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 45689999999999999999999 999999988 889999999864
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.24 E-value=2.5e-12 Score=94.01 Aligned_cols=53 Identities=26% Similarity=0.533 Sum_probs=46.4
Q ss_pred cccCCCCCeeeccccccccceecCCCCcccHHhHHHHhhc-CCCCccccccccc
Q 031282 57 EIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 109 (162)
Q Consensus 57 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 109 (162)
...+.+.+.|+||++.+.+|+.++|||.||..|+..|+.. ...||.||.++..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3455678999999999999999999999999999999875 4599999998853
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.24 E-value=1.9e-12 Score=90.33 Aligned_cols=50 Identities=28% Similarity=0.764 Sum_probs=45.1
Q ss_pred CCCCeeeccccccccc-------eecCCCCcccHHhHHHHhhcCCCCcccccccccc
Q 031282 61 EREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 110 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~-------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 110 (162)
.+...|+||++.+.++ +.++|||.||..|+.+|+....+||+||.++...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4678999999999876 7899999999999999999999999999999643
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.23 E-value=2.8e-12 Score=79.16 Aligned_cols=48 Identities=21% Similarity=0.542 Sum_probs=42.9
Q ss_pred CCCeeeccccccccceec--CCCCc-ccHHhHHHHhhcCCCCccccccccc
Q 031282 62 REEECGICLEICCKIVLP--DCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 109 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~~--~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 109 (162)
....|+||++...+++.+ ||||. ||..|+..|...+..||+||.++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 456899999999998777 99998 9999999988888899999999863
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.18 E-value=1.3e-11 Score=100.75 Aligned_cols=48 Identities=33% Similarity=0.862 Sum_probs=44.1
Q ss_pred CCCeeeccccccccceecCCCCcccHHhHHHHhh-cCCCCccccccccc
Q 031282 62 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR 109 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 109 (162)
....|+||++.+.+++.++|||.||..|+..|.. ....||+||.++..
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3478999999999999999999999999999998 78899999999964
No 59
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.11 E-value=3.2e-11 Score=93.42 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=52.1
Q ss_pred cCCCCCeeeccccccccceec-CCCCcccHHhHHHHhhcC--CCCcc--ccccccccCCCCccccCChhHHHHh
Q 031282 59 DIEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARS--QSCPF--CRDSLRRVNSGDLWIYTSEDDIVDL 127 (162)
Q Consensus 59 ~~~~~~~C~IC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~--~~CP~--Cr~~~~~~~~~~~~~~~~~~~~~~~ 127 (162)
.....+.||||++.+.+||.. .|||+||..||..|+... ..||+ |+..+.. ..+..+..+..+++.
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~---~dL~pN~~L~~lve~ 247 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM---RDFVRDPIMELRCKI 247 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG---GGEEECHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch---hhCCcCHHHHHHHHH
Confidence 345678999999999999985 999999999999987643 57999 9998853 346666666555544
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.8e-11 Score=76.38 Aligned_cols=44 Identities=30% Similarity=0.757 Sum_probs=38.7
Q ss_pred CCCeeeccccccccceecCCCCc-ccHHhHHHHhhcCCCCccccccccc
Q 031282 62 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 109 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 109 (162)
+...|+||++.+.+++.++|||. ||..|+.. ...||+||.++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 34579999999999999999999 99999964 3789999999864
No 61
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.09 E-value=1.6e-11 Score=79.09 Aligned_cols=45 Identities=31% Similarity=0.696 Sum_probs=39.9
Q ss_pred CCCeeeccccccccceecCCCCc-ccHHhHHHHhhcCCCCcccccccccc
Q 031282 62 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRRV 110 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 110 (162)
++..|+||++.+.+++.++|||. ||..|+..| ..||+||.++...
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 34579999999999999999999 999999876 4899999999743
No 62
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.09 E-value=1.1e-11 Score=85.62 Aligned_cols=47 Identities=23% Similarity=0.613 Sum_probs=1.0
Q ss_pred CCCeeeccccccccc------------------eecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 62 REEECGICLEICCKI------------------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~------------------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
.+..|+||++.+.++ +.++|+|.||..||.+|+....+||+||.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 457899999998753 22589999999999999999999999999874
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.2e-10 Score=72.80 Aligned_cols=45 Identities=31% Similarity=0.804 Sum_probs=40.2
Q ss_pred CCCCeeeccccccccceecCCCCc-ccHHhHHHHhhcCCCCccccccccc
Q 031282 61 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 109 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 109 (162)
.+...|.||++...+++++||||. ||..|+.. ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 457889999999999999999999 99999884 4789999999964
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=2.3e-10 Score=73.82 Aligned_cols=48 Identities=21% Similarity=0.583 Sum_probs=40.8
Q ss_pred CCCCeeeccccccc--cceecCCC-----CcccHHhHHHHhhcC--CCCcccccccc
Q 031282 61 EREEECGICLEICC--KIVLPDCN-----HSMCMRCYRNWRARS--QSCPFCRDSLR 108 (162)
Q Consensus 61 ~~~~~C~IC~~~~~--~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 108 (162)
.++..|.||++.+. +++.++|+ |.||..||.+|+..+ .+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 45678999998875 56778996 999999999999854 58999999985
No 65
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=1.3e-09 Score=69.17 Aligned_cols=48 Identities=21% Similarity=0.510 Sum_probs=40.7
Q ss_pred CCCeeecccccccccee-cCCCCcccHHhHHHHhhcC--CCCccccccccc
Q 031282 62 REEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARS--QSCPFCRDSLRR 109 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 109 (162)
....|+||.+.+..... ..|+|.||..|+.+|+... .+||+||.++..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 45789999999985443 4899999999999999876 889999998864
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.88 E-value=3e-10 Score=91.79 Aligned_cols=45 Identities=27% Similarity=0.846 Sum_probs=41.0
Q ss_pred CCCCeeeccccccccceecCCCCc-ccHHhHHHHhhcCCCCccccccccc
Q 031282 61 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 109 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 109 (162)
.++..|+||++.+.+++.++|||. ||..|+..| ..||+||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 356899999999999999999999 999999988 789999999864
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.85 E-value=8.8e-10 Score=67.43 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=43.7
Q ss_pred CCeeeccccccccceec-CCCCcccHHhHHHHhhcCCCCccccccccccC
Q 031282 63 EEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 111 (162)
Q Consensus 63 ~~~C~IC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 111 (162)
.+.|+||++.+.+|+.+ ++||.|+..||.+|+..+.+||+.+.++....
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 46799999999999998 99999999999999987788999999996433
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=2.3e-09 Score=70.85 Aligned_cols=46 Identities=22% Similarity=0.579 Sum_probs=37.1
Q ss_pred CCCCeeeccccccccceec---CCCCcccHHhHHHHhhc--------CCCCcc--cccc
Q 031282 61 EREEECGICLEICCKIVLP---DCNHSMCMRCYRNWRAR--------SQSCPF--CRDS 106 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~---~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~ 106 (162)
.+...|+||++.+..+..+ +|||.||..|+..++.. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3567899999999877553 79999999999996541 247999 9987
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.57 E-value=6.2e-08 Score=58.89 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=39.6
Q ss_pred CCCCeeeccccccccceecCCC--C---cccHHhHHHHhhc--CCCCcccccccc
Q 031282 61 EREEECGICLEICCKIVLPDCN--H---SMCMRCYRNWRAR--SQSCPFCRDSLR 108 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~Cg--H---~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 108 (162)
++...|.||++...++..+||. | .||..|+.+|+.. ..+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567899999887777778865 4 7999999999873 678999999874
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.54 E-value=1.8e-08 Score=80.82 Aligned_cols=48 Identities=25% Similarity=0.605 Sum_probs=38.6
Q ss_pred CCCCeeecccccccc----c----eecCCCCcccHHhHHHHhhcC-----------CCCcccccccc
Q 031282 61 EREEECGICLEICCK----I----VLPDCNHSMCMRCYRNWRARS-----------QSCPFCRDSLR 108 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~----~----~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 108 (162)
.....|+||++.+.+ | ....|||.||..|+.+|+... ..||+||.+++
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 356789999998886 2 124799999999999999742 46999999985
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.40 E-value=1.9e-07 Score=61.86 Aligned_cols=47 Identities=23% Similarity=0.494 Sum_probs=38.9
Q ss_pred eeecccccccc-ceecCCCCcccHHhHHHHhh-cCCCCccccccccccC
Q 031282 65 ECGICLEICCK-IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVN 111 (162)
Q Consensus 65 ~C~IC~~~~~~-~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 111 (162)
.|++|--.+.. ..++||.|.||.+|+..|.+ ..++||.|+.++.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 48888877774 46689999999999999875 5789999999997544
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.68 E-value=4.6e-05 Score=58.37 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=39.4
Q ss_pred CCeeecccccccccee-cCCCCcccHHhHHHHhhc--CCCCcccccccccc
Q 031282 63 EEECGICLEICCKIVL-PDCNHSMCMRCYRNWRAR--SQSCPFCRDSLRRV 110 (162)
Q Consensus 63 ~~~C~IC~~~~~~~~~-~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 110 (162)
-..|.+|.+....... ..|+|.||..|+..|+.. ...||.|+.+.+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 5689999999886654 359999999999999875 45899999987543
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.93 E-value=0.00037 Score=45.90 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=27.9
Q ss_pred CCCeeeccccc-ccccee--cCCCCcccHHhHHH-Hh
Q 031282 62 REEECGICLEI-CCKIVL--PDCNHSMCMRCYRN-WR 94 (162)
Q Consensus 62 ~~~~C~IC~~~-~~~~~~--~~CgH~fc~~Ci~~-~~ 94 (162)
++..|+||.+. +.+++. +.|+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 45789999975 667777 89999999999998 43
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=95.87 E-value=0.0082 Score=54.00 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=51.6
Q ss_pred cCCCCCeeeccccccccceecCCC-CcccHHhHHHHhhcCCCCccccccccccCCCCccccCChhHH
Q 031282 59 DIEREEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDI 124 (162)
Q Consensus 59 ~~~~~~~C~IC~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~ 124 (162)
+..+++.|||-.+.+.+||.++-| +++-..+|.+|+....+||+=|.++... .+.+|..+...
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~---~liPN~~Lk~~ 950 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE---DVTPNEELRQK 950 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG---GCEECHHHHHH
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc---cccccHHHHHH
Confidence 345789999999999999999998 5899999999999889999999999643 35555554443
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.33 E-value=0.025 Score=36.81 Aligned_cols=49 Identities=27% Similarity=0.526 Sum_probs=39.5
Q ss_pred CCCCeeeccccccccceecCCC-CcccHHhHHHHhhcCCCCccccccccccC
Q 031282 61 EREEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRRVN 111 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 111 (162)
.....|..|.-... .+..|. |-.|..|+...+..+..||+|..++....
T Consensus 26 ~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 26 LGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred cCcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 45688999976555 455675 88999999999999999999999996544
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.56 E-value=0.069 Score=33.71 Aligned_cols=35 Identities=26% Similarity=0.515 Sum_probs=29.5
Q ss_pred CCCCeeeccccccccceecCC----CCcccHHhHHHHhh
Q 031282 61 EREEECGICLEICCKIVLPDC----NHSMCMRCYRNWRA 95 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~C----gH~fc~~Ci~~~~~ 95 (162)
...+.|.+|.+.+.+.....| +|.||..|-+...+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 567899999999998766666 69999999988665
No 77
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.52 E-value=0.27 Score=29.74 Aligned_cols=46 Identities=17% Similarity=0.408 Sum_probs=31.4
Q ss_pred CCCeeeccccccccceecCCCCcccHHhHHHHhh----cCCCCccccccc
Q 031282 62 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 107 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 107 (162)
....|.+|.+.-.-..--.|...||..|+.+.+. ....||.|....
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 4567999986422111147889999999987554 346799997644
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=89.31 E-value=0.55 Score=29.82 Aligned_cols=44 Identities=23% Similarity=0.533 Sum_probs=30.8
Q ss_pred CCCCCeeeccccccccceec---CCCCcccHHhHHHH--hh--------------cCCCCcccc
Q 031282 60 IEREEECGICLEICCKIVLP---DCNHSMCMRCYRNW--RA--------------RSQSCPFCR 104 (162)
Q Consensus 60 ~~~~~~C~IC~~~~~~~~~~---~CgH~fc~~Ci~~~--~~--------------~~~~CP~Cr 104 (162)
...+..|.||-..-.+ .++ -|+-.||..|+.+- .. ...+||.|-
T Consensus 12 ~~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCCCcccCcccccccc-ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 3567899999754433 233 47889999999985 21 245799993
No 79
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=87.68 E-value=0.39 Score=38.78 Aligned_cols=62 Identities=21% Similarity=0.344 Sum_probs=41.4
Q ss_pred CCCCeeecccccccccee-cCCCCcccHH--hHHHHhh--cCCCCccccccccccCCCCccccCChhHHH
Q 031282 61 EREEECGICLEICCKIVL-PDCNHSMCMR--CYRNWRA--RSQSCPFCRDSLRRVNSGDLWIYTSEDDIV 125 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~-~~CgH~fc~~--Ci~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~ 125 (162)
.-.+.||+=...+..|+. ..|.|.-|.+ -+..... ....||+|.+.+. ...+..+..+.+++
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~---~~dL~ID~~~~~IL 313 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA---LENLAISEFVDDIL 313 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC---GGGEEEBHHHHHHH
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC---HHHeeEcHHHHHHH
Confidence 345899999999998877 6899985544 3333222 4678999998874 33355555544443
No 80
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=86.77 E-value=0.49 Score=38.09 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=41.0
Q ss_pred CCCeeecccccccccee-cCCCCcccHH--hHHHHhh--cCCCCccccccccccCCCCccccCChhHHH
Q 031282 62 REEECGICLEICCKIVL-PDCNHSMCMR--CYRNWRA--RSQSCPFCRDSLRRVNSGDLWIYTSEDDIV 125 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~-~~CgH~fc~~--Ci~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~ 125 (162)
-.+.||+=...+..|+. ..|.|.-|.+ -+..... ....||+|.+.+. ...+..+..+.+++
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~---~~dL~ID~~~~~IL 279 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA---YESLILDGLFMEIL 279 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC---GGGEEEBHHHHHHH
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC---HHHeEEcHHHHHHH
Confidence 45789999999998877 7899985544 3333222 4678999999885 33355555544443
No 81
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=85.31 E-value=0.35 Score=35.72 Aligned_cols=46 Identities=22% Similarity=0.426 Sum_probs=31.0
Q ss_pred CCCeeeccccccccceecCCCCcccHHhHHHHhh----cCCCCccccccc
Q 031282 62 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 107 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 107 (162)
.+..|.+|...-.-..--.|...||..|+.+-+. ....||.|+..-
T Consensus 6 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4567999985422111136888999999876433 356899998754
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=84.27 E-value=0.72 Score=27.21 Aligned_cols=45 Identities=24% Similarity=0.603 Sum_probs=30.5
Q ss_pred CCCCCeeecccccccccee-cCCCCcccHHhHHHHhh----cCCCCccccc
Q 031282 60 IEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRA----RSQSCPFCRD 105 (162)
Q Consensus 60 ~~~~~~C~IC~~~~~~~~~-~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~ 105 (162)
...+..|.+|...- +-+. -.|...||..|+..-+. ....||.|..
T Consensus 8 ~~~~~~C~vC~~~g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQGG-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCCS-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCCC-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 35567899998742 1111 36778999999987332 3567999965
No 83
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=83.84 E-value=1.7 Score=30.65 Aligned_cols=44 Identities=20% Similarity=0.467 Sum_probs=29.4
Q ss_pred CCCeeeccccccc---c--ceecCCCCcccHHhHHHHhh--cCCCCcccccc
Q 031282 62 REEECGICLEICC---K--IVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDS 106 (162)
Q Consensus 62 ~~~~C~IC~~~~~---~--~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~ 106 (162)
.+..|.+|...|. + .+-..|.|.+|..|-. |.. ....|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 5689999999865 2 2336899999999952 322 23457777543
No 84
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=81.96 E-value=1.2 Score=26.23 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=30.4
Q ss_pred Ceeeccccccccce---ecCCCCcccHHhHHHHhhcCCCCccc
Q 031282 64 EECGICLEICCKIV---LPDCNHSMCMRCYRNWRARSQSCPFC 103 (162)
Q Consensus 64 ~~C~IC~~~~~~~~---~~~CgH~fc~~Ci~~~~~~~~~CP~C 103 (162)
..|--|...+.+.. -..|++.||.+|=.=..+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 45989998886543 35799999999965455667789988
No 85
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=79.77 E-value=1.9 Score=29.65 Aligned_cols=31 Identities=26% Similarity=0.645 Sum_probs=22.0
Q ss_pred CCCCeeeccccccc---c--ceecCCCCcccHHhHH
Q 031282 61 EREEECGICLEICC---K--IVLPDCNHSMCMRCYR 91 (162)
Q Consensus 61 ~~~~~C~IC~~~~~---~--~~~~~CgH~fc~~Ci~ 91 (162)
.....|.+|...+. + .+-..|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 45678999998884 1 1335788888888743
No 86
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=79.66 E-value=2.9 Score=26.73 Aligned_cols=47 Identities=26% Similarity=0.669 Sum_probs=36.0
Q ss_pred CCCeeecccccccc---c-ee---cCCCCcccHHhHHH-HhhcCCCCcccccccc
Q 031282 62 REEECGICLEICCK---I-VL---PDCNHSMCMRCYRN-WRARSQSCPFCRDSLR 108 (162)
Q Consensus 62 ~~~~C~IC~~~~~~---~-~~---~~CgH~fc~~Ci~~-~~~~~~~CP~Cr~~~~ 108 (162)
....|.||-+..-. . ++ -.|+-..|..|..- ..+....||.|...+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45789999988652 1 22 35777889999977 6678889999999885
No 87
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=79.32 E-value=1.1 Score=32.23 Aligned_cols=46 Identities=22% Similarity=0.453 Sum_probs=30.5
Q ss_pred CCCeeeccccccccceecCCCCcccHHhHHHHhh----cCCCCccccccc
Q 031282 62 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 107 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 107 (162)
.+..|.+|.+.-.-..--.|...||..|+.+-+. ....||.|+..-
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4567999985422111136888999999876433 356799998754
No 88
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=77.79 E-value=0.19 Score=31.53 Aligned_cols=20 Identities=20% Similarity=0.835 Sum_probs=16.4
Q ss_pred CCCCcccHHhHHHHhhcCCCCc
Q 031282 80 DCNHSMCMRCYRNWRARSQSCP 101 (162)
Q Consensus 80 ~CgH~fc~~Ci~~~~~~~~~CP 101 (162)
.||+.||..|...|.. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 6999999999998866 5553
No 89
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=77.34 E-value=0.62 Score=28.51 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=32.4
Q ss_pred CCCCeeecccccccccee---cCCCCcccHHhHHHHhh----cCCCCcccccccc
Q 031282 61 EREEECGICLEICCKIVL---PDCNHSMCMRCYRNWRA----RSQSCPFCRDSLR 108 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~---~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~ 108 (162)
.+...|.+|........+ -.|...||..|+..-.. ....||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345679999876543223 26788899999875332 3567999987664
No 90
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=76.31 E-value=2.3 Score=28.77 Aligned_cols=30 Identities=17% Similarity=0.435 Sum_probs=22.2
Q ss_pred CCeeeccccccccc----eecCCCCcccHHhHHH
Q 031282 63 EEECGICLEICCKI----VLPDCNHSMCMRCYRN 92 (162)
Q Consensus 63 ~~~C~IC~~~~~~~----~~~~CgH~fc~~Ci~~ 92 (162)
...|.+|...|.-. .--.||+.||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 45799999888732 2247999999999543
No 91
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=76.09 E-value=6.3 Score=26.91 Aligned_cols=45 Identities=22% Similarity=0.474 Sum_probs=30.0
Q ss_pred CCCCeeeccccccccceecCCCCcccHHhHHHHh-----------hcCCCCccccc
Q 031282 61 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWR-----------ARSQSCPFCRD 105 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~ 105 (162)
..+..|.+|.+--.-.---.|-..||..|+.+-+ .....|+.|+.
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3456699998643311123688899999998631 23468999954
No 92
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=76.00 E-value=6.9 Score=27.16 Aligned_cols=45 Identities=22% Similarity=0.474 Sum_probs=31.0
Q ss_pred CCCCeeeccccccccceecCCCCcccHHhHHHHh-----------hcCCCCccccc
Q 031282 61 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWR-----------ARSQSCPFCRD 105 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~ 105 (162)
..+..|.+|.+-=.-.---.|...||..|+.+-+ .....||.|+.
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4567899998744321223788899999999633 23567999964
No 93
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=75.01 E-value=0.72 Score=27.22 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=30.0
Q ss_pred CCCCeeeccccccccceecCCCCcccHHhHHHHhh----cCCCCccccccc
Q 031282 61 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 107 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 107 (162)
..+..|.+|.+.-.-..--.|...||..|+.+-+. ....||.|....
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 45677999986321111136778899999875322 345799997643
No 94
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=73.78 E-value=0.35 Score=28.64 Aligned_cols=34 Identities=24% Similarity=0.636 Sum_probs=22.2
Q ss_pred Ceeeccccccccc-----eec-C--CCCcccHHhHHHHhhcC
Q 031282 64 EECGICLEICCKI-----VLP-D--CNHSMCMRCYRNWRARS 97 (162)
Q Consensus 64 ~~C~IC~~~~~~~-----~~~-~--CgH~fc~~Ci~~~~~~~ 97 (162)
-.||-|...+... ++- . |++.||..|..+|....
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 4688887777632 222 2 77888888877776543
No 95
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=69.81 E-value=2.3 Score=26.53 Aligned_cols=31 Identities=23% Similarity=0.535 Sum_probs=22.9
Q ss_pred CCCeeeccccccccc----eecCCCCcccHHhHHH
Q 031282 62 REEECGICLEICCKI----VLPDCNHSMCMRCYRN 92 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~----~~~~CgH~fc~~Ci~~ 92 (162)
+...|.+|...|.-. .-..||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 445799999888732 1247999999999654
No 96
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=68.87 E-value=2.6 Score=23.50 Aligned_cols=41 Identities=24% Similarity=0.556 Sum_probs=26.0
Q ss_pred eeecccccccccee---cCCCCcccHHhHHHHhh----cCCCCccccc
Q 031282 65 ECGICLEICCKIVL---PDCNHSMCMRCYRNWRA----RSQSCPFCRD 105 (162)
Q Consensus 65 ~C~IC~~~~~~~~~---~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~ 105 (162)
.|.+|...-....+ -.|...||..|+.+=+. ....||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47788754322222 36888999999975222 3456999865
No 97
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=68.49 E-value=2 Score=27.25 Aligned_cols=47 Identities=23% Similarity=0.482 Sum_probs=31.9
Q ss_pred CCCCeeeccccccc--ccee---cCCCCcccHHhHHHHh--hcCCCCccccccc
Q 031282 61 EREEECGICLEICC--KIVL---PDCNHSMCMRCYRNWR--ARSQSCPFCRDSL 107 (162)
Q Consensus 61 ~~~~~C~IC~~~~~--~~~~---~~CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~ 107 (162)
.++..|.||...-. ...+ -.|.-.||..|+..-. .....||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 46688999987641 1122 3677889999987522 2466799997654
No 98
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=68.02 E-value=1 Score=26.59 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=31.4
Q ss_pred CCCCeeecccccccc-cee---cCCCCcccHHhHHHHhh-----cCCCCccccccc
Q 031282 61 EREEECGICLEICCK-IVL---PDCNHSMCMRCYRNWRA-----RSQSCPFCRDSL 107 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~-~~~---~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~ 107 (162)
.+...|++|.....+ ... -.|...||..|+.--.. ....||.|+..-
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 456789999887642 222 36778899999854221 456799997643
No 99
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=67.71 E-value=9.8 Score=30.82 Aligned_cols=27 Identities=26% Similarity=0.712 Sum_probs=21.4
Q ss_pred CCCCcccHHhHHHHhh----------cCCCCcccccc
Q 031282 80 DCNHSMCMRCYRNWRA----------RSQSCPFCRDS 106 (162)
Q Consensus 80 ~CgH~fc~~Ci~~~~~----------~~~~CP~Cr~~ 106 (162)
.|...||..||..++. ....|-+|...
T Consensus 112 ~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp TCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 7889999999998774 35679999643
No 100
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=67.70 E-value=3.2 Score=25.22 Aligned_cols=29 Identities=17% Similarity=0.439 Sum_probs=21.6
Q ss_pred CCeeeccccccccc----eecCCCCcccHHhHH
Q 031282 63 EEECGICLEICCKI----VLPDCNHSMCMRCYR 91 (162)
Q Consensus 63 ~~~C~IC~~~~~~~----~~~~CgH~fc~~Ci~ 91 (162)
+..|.+|...|.-- .-..||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 45899999887732 124799999999954
No 101
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=66.94 E-value=4.2 Score=25.35 Aligned_cols=32 Identities=22% Similarity=0.502 Sum_probs=23.7
Q ss_pred CCCCeeeccccccccc----eecCCCCcccHHhHHH
Q 031282 61 EREEECGICLEICCKI----VLPDCNHSMCMRCYRN 92 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~----~~~~CgH~fc~~Ci~~ 92 (162)
.+...|.+|...|.-. .-..||+.||..|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3456899999888732 1247999999999654
No 102
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.85 E-value=2.6 Score=26.34 Aligned_cols=31 Identities=23% Similarity=0.593 Sum_probs=22.4
Q ss_pred CCCCeeeccccccccc----eecCCCCcccHHhHH
Q 031282 61 EREEECGICLEICCKI----VLPDCNHSMCMRCYR 91 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~----~~~~CgH~fc~~Ci~ 91 (162)
.+...|.+|...|.-. .-..||..||..|..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3456899999888632 114799999999954
No 103
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=66.12 E-value=0.54 Score=31.89 Aligned_cols=45 Identities=22% Similarity=0.552 Sum_probs=28.2
Q ss_pred CCCCeeeccccccccc----eecCCCCcccHHhHHHHhhcCCCCccccc
Q 031282 61 EREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRD 105 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~ 105 (162)
.+...|..|...|.-. .-..||..||..|..........|-.|-.
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 4456899999888632 22589999999996654444556777744
No 104
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.59 E-value=0.7 Score=26.70 Aligned_cols=45 Identities=20% Similarity=0.475 Sum_probs=27.9
Q ss_pred CCCCeeeccccccccceecCCCCcccHHhHHHHhh----cCCCCccccc
Q 031282 61 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRD 105 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~ 105 (162)
..+..|.+|...-.-..--.|...||..|+.+-+. ....||.|..
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45678999987421111136788899999875222 2445777743
No 105
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.37 E-value=5 Score=24.26 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=31.0
Q ss_pred CCCCeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 61 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
.....|.-|...+...++..-+..||..| +.|-.|+..+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCc--------CeeCCCCCCCC
Confidence 34568999998887666666777888877 67999988874
No 106
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.33 E-value=0.56 Score=29.91 Aligned_cols=47 Identities=13% Similarity=0.400 Sum_probs=32.7
Q ss_pred CCCeeeccccccc---ccee--cCCCCcccHHhHHHHh--------hcCCCCcccccccc
Q 031282 62 REEECGICLEICC---KIVL--PDCNHSMCMRCYRNWR--------ARSQSCPFCRDSLR 108 (162)
Q Consensus 62 ~~~~C~IC~~~~~---~~~~--~~CgH~fc~~Ci~~~~--------~~~~~CP~Cr~~~~ 108 (162)
.+..|.+|...-. +.++ -.|...||..|+.+-+ .....|+.|.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4568999987643 2333 3688899999997632 24568999977654
No 107
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=64.01 E-value=2.8 Score=27.31 Aligned_cols=12 Identities=25% Similarity=0.977 Sum_probs=10.6
Q ss_pred cccHHhHHHHhh
Q 031282 84 SMCMRCYRNWRA 95 (162)
Q Consensus 84 ~fc~~Ci~~~~~ 95 (162)
.||..|+.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999976
No 108
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=63.78 E-value=2.8 Score=27.33 Aligned_cols=12 Identities=33% Similarity=1.082 Sum_probs=10.6
Q ss_pred cccHHhHHHHhh
Q 031282 84 SMCMRCYRNWRA 95 (162)
Q Consensus 84 ~fc~~Ci~~~~~ 95 (162)
.||..|+.+|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999976
No 109
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=63.15 E-value=1.9 Score=31.34 Aligned_cols=45 Identities=16% Similarity=0.367 Sum_probs=29.2
Q ss_pred CCeeeccccccccceecCCCCcccHHhHHHHhh----cCCCCccccccc
Q 031282 63 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 107 (162)
Q Consensus 63 ~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 107 (162)
+..|.+|.+.-.-..--.|...||..|+.+=+. ....||.|+..-
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 346889985432112236778899999875222 456799998654
No 110
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=62.75 E-value=16 Score=25.86 Aligned_cols=42 Identities=19% Similarity=0.565 Sum_probs=27.3
Q ss_pred CCeeecccccccccee---cCCCCcccHHhHHHHhhc----------CCCCccccc
Q 031282 63 EEECGICLEICCKIVL---PDCNHSMCMRCYRNWRAR----------SQSCPFCRD 105 (162)
Q Consensus 63 ~~~C~IC~~~~~~~~~---~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~ 105 (162)
+..|.+|-+--. .+. .+|...||..||..++.. ...|-+|..
T Consensus 79 ~~yC~wC~~Gg~-l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 79 QSYCTICCGGRE-VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp BSSCTTTSCCSE-EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred cceeeEecCCCe-EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 456677665321 111 258889999999987652 457988854
No 111
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=61.82 E-value=2.9 Score=26.54 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=22.9
Q ss_pred CCCeeeccccccccc----eecCCCCcccHHhHHH
Q 031282 62 REEECGICLEICCKI----VLPDCNHSMCMRCYRN 92 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~----~~~~CgH~fc~~Ci~~ 92 (162)
+...|.+|...|.-- .-..||+.||..|...
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 346799999887632 2257999999999654
No 112
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=61.35 E-value=2.5 Score=27.32 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=28.3
Q ss_pred CCCeeeccccccccceec---CCCCcccHHhHHHHhh---cCCCCccccc
Q 031282 62 REEECGICLEICCKIVLP---DCNHSMCMRCYRNWRA---RSQSCPFCRD 105 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~~---~CgH~fc~~Ci~~~~~---~~~~CP~Cr~ 105 (162)
+...| ||........++ .|.-.||..|+..-.. ....||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 887665544443 6778899999865222 3467999964
No 113
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=61.29 E-value=0.81 Score=36.04 Aligned_cols=46 Identities=20% Similarity=0.431 Sum_probs=35.1
Q ss_pred CCCCeeeccccccccceec----CCC--CcccHHhHHHHhhcCCCCcccccc
Q 031282 61 EREEECGICLEICCKIVLP----DCN--HSMCMRCYRNWRARSQSCPFCRDS 106 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~----~Cg--H~fc~~Ci~~~~~~~~~CP~Cr~~ 106 (162)
.....||+|-....-.++. .=| +.+|.-|-..|......||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5578999999877654433 234 467999999999888999999765
No 114
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=61.12 E-value=4.7 Score=23.31 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=27.9
Q ss_pred CCeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 63 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 63 ~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
...|+.|...+....+..-|..||..| ..|..|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTT--------CBCTTTCCBCS
T ss_pred CCCCcccCCEecceEEEECccccccCc--------CEECCCCCCCC
Confidence 357888888777655556677777766 67888988875
No 115
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=60.87 E-value=3.1 Score=25.31 Aligned_cols=46 Identities=24% Similarity=0.548 Sum_probs=30.7
Q ss_pred CCCCeeecccccc--c-ccee--cCCCCcccHHhHHHHh--hcCCCCcccccc
Q 031282 61 EREEECGICLEIC--C-KIVL--PDCNHSMCMRCYRNWR--ARSQSCPFCRDS 106 (162)
Q Consensus 61 ~~~~~C~IC~~~~--~-~~~~--~~CgH~fc~~Ci~~~~--~~~~~CP~Cr~~ 106 (162)
..+..|.||...- . +..+ -.|.-.||..|+..-. .....||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4677899998764 1 2222 3788899999987522 245678888653
No 116
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=60.58 E-value=3.1 Score=26.53 Aligned_cols=46 Identities=15% Similarity=0.394 Sum_probs=30.4
Q ss_pred CCCCeeeccccccccceecCCCCcccHHhHHHHhh----cCCCCcccccc
Q 031282 61 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDS 106 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~ 106 (162)
..+..|.+|...-.-..--.|.-.||..|+.+=+. ....||.|...
T Consensus 23 ~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 45678999986532111136777899999976332 35579999754
No 117
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=60.53 E-value=1.9 Score=25.74 Aligned_cols=46 Identities=17% Similarity=0.516 Sum_probs=30.2
Q ss_pred CCCCeeecccccccccee-cCCCCcccHHhHHHHhh----cCCCCccccccc
Q 031282 61 EREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 107 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~-~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 107 (162)
..+..|.+|.+.- +-+. -.|...||..|+.+-+. ....||.|...-
T Consensus 6 ~~~~~C~vC~~~g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDGG-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCCS-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCCC-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 3567899998642 2111 36788899999875222 355699996543
No 118
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=60.09 E-value=3.5 Score=30.43 Aligned_cols=32 Identities=16% Similarity=0.370 Sum_probs=23.4
Q ss_pred CCCCeeeccccccccc----eecCCCCcccHHhHHH
Q 031282 61 EREEECGICLEICCKI----VLPDCNHSMCMRCYRN 92 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~----~~~~CgH~fc~~Ci~~ 92 (162)
.++..|.+|...|.-. .-..||+.||..|...
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4567999999888722 2247999999999543
No 119
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.02 E-value=8.5 Score=23.27 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=29.7
Q ss_pred CCCeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 62 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
....|+-|...+....+..-|..||..| +.|..|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccC
Confidence 3467999988887665566677777776 77999998885
No 120
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=59.77 E-value=3.9 Score=30.45 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=23.8
Q ss_pred CCCCeeeccccccccc----eecCCCCcccHHhHHH
Q 031282 61 EREEECGICLEICCKI----VLPDCNHSMCMRCYRN 92 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~----~~~~CgH~fc~~Ci~~ 92 (162)
.++..|.+|...|.-- .-..||+.||..|-..
T Consensus 162 ~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred ccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 4557999999888732 2257999999999654
No 121
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.74 E-value=4.5 Score=24.62 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=29.3
Q ss_pred CCeeeccccccccceec---CCCCcccHHhHHHH---------hhcCCCCccccccc
Q 031282 63 EEECGICLEICCKIVLP---DCNHSMCMRCYRNW---------RARSQSCPFCRDSL 107 (162)
Q Consensus 63 ~~~C~IC~~~~~~~~~~---~CgH~fc~~Ci~~~---------~~~~~~CP~Cr~~~ 107 (162)
...| +|........++ .|...||..|+.-- ......||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4567 898776543333 67889999998421 12467899997644
No 122
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=59.50 E-value=1.2 Score=23.24 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=9.0
Q ss_pred CCCeeeccccccccc
Q 031282 62 REEECGICLEICCKI 76 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~ 76 (162)
+.+.||+|+..+..+
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 346677777666543
No 123
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=59.49 E-value=4.3 Score=24.43 Aligned_cols=33 Identities=27% Similarity=0.580 Sum_probs=24.6
Q ss_pred CCCCeeeccccccccceecCC-CCcccHHhHHHHh
Q 031282 61 EREEECGICLEICCKIVLPDC-NHSMCMRCYRNWR 94 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~C-gH~fc~~Ci~~~~ 94 (162)
++..-|.||.+... -.-+.| |-.||..|+.+..
T Consensus 6 ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 45668999999833 344788 7789999987743
No 124
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.30 E-value=5.4 Score=23.81 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=24.7
Q ss_pred CeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 64 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 64 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
..|+-|...+...++..-+..||..| ..|-.|..++.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 45777777776655555666677666 66777777764
No 125
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=58.50 E-value=11 Score=23.29 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=30.7
Q ss_pred CCCeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 62 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
....|.-|...+...++..-+..||..| +.|-.|...+.
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTT
T ss_pred cCCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCC
Confidence 4568999998888766666777888877 77999998885
No 126
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.05 E-value=3.9 Score=25.45 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=30.2
Q ss_pred CCCeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 62 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
....|.-|...+....+..-+..||..| +.|-.|+.++.
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCccCCCEecceEEEECCccccccC--------CccCCCCCCCC
Confidence 3467999998887666666677777777 77999998885
No 127
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=57.68 E-value=5.1 Score=25.34 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=23.4
Q ss_pred CCCCeeeccccccccc----eecCCCCcccHHhHHH
Q 031282 61 EREEECGICLEICCKI----VLPDCNHSMCMRCYRN 92 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~----~~~~CgH~fc~~Ci~~ 92 (162)
.+...|.+|...|.-. .-..||..||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3456899999887732 1247999999999654
No 128
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.49 E-value=9.4 Score=22.32 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=27.5
Q ss_pred CCeeeccccccc--cceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 63 EEECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 63 ~~~C~IC~~~~~--~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
...|.-|...+. +.++..-+..||..| ..|-.|..++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHC--------FLCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTT--------CBCTTTCCBTT
T ss_pred CCCCccCCCccccCccEEEECccccCccc--------CeECCCCCcCC
Confidence 357888888877 345556677777776 67888888775
No 129
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=57.00 E-value=2.7 Score=27.59 Aligned_cols=44 Identities=16% Similarity=0.377 Sum_probs=29.0
Q ss_pred CCCCeeecccccccc--cee-cCCCCcccHHhHHHHhh----cCCCCcccc
Q 031282 61 EREEECGICLEICCK--IVL-PDCNHSMCMRCYRNWRA----RSQSCPFCR 104 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~--~~~-~~CgH~fc~~Ci~~~~~----~~~~CP~Cr 104 (162)
..+..|.+|.+.-.. -+. ..|+..||..|+..... ....||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 456789999765432 122 57899999999977443 344566654
No 130
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=56.85 E-value=7.2 Score=25.75 Aligned_cols=46 Identities=11% Similarity=0.041 Sum_probs=34.7
Q ss_pred CCeeecccccccc---ceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 63 EEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 63 ~~~C~IC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
-+.|..|...+.+ .....=|..||..|..+.+.....|..|..+|.
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 3788999888862 344556778999998876554448999999886
No 131
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=56.83 E-value=2.8 Score=30.41 Aligned_cols=44 Identities=14% Similarity=0.304 Sum_probs=30.4
Q ss_pred Ceeeccccccccce----ec---CCCCcccHHhHHHH------hh-----cCCCCccccccc
Q 031282 64 EECGICLEICCKIV----LP---DCNHSMCMRCYRNW------RA-----RSQSCPFCRDSL 107 (162)
Q Consensus 64 ~~C~IC~~~~~~~~----~~---~CgH~fc~~Ci~~~------~~-----~~~~CP~Cr~~~ 107 (162)
..|+||...+.+.- .+ .|...||..|..-- .. ....||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 46999998876432 33 57889999998321 11 267899998754
No 132
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.36 E-value=6.2 Score=23.05 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=25.0
Q ss_pred CeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 64 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 64 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
..|..|...+....+..-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeeccceEEECccccCCCC--------CccCCCCCcCC
Confidence 46777877776555555566677666 66888877774
No 133
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.46 E-value=6.2 Score=23.84 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=27.2
Q ss_pred CeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 64 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 64 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
..|+.|...+....+..-+..||..| ..|..|..++.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcCceEEEECCceecccc--------CCccCCCCccC
Confidence 46888888777655555677777766 67888988874
No 134
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.07 E-value=6.4 Score=23.02 Aligned_cols=38 Identities=26% Similarity=0.533 Sum_probs=26.1
Q ss_pred CCeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 63 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 63 ~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
...|.-|...+...++..-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPEC--------FRCDLCQEVLA 42 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTT--------SBCSSSCCBCS
T ss_pred CCcCccCCCEecceEEEECcccccccC--------CEeCCCCCcCC
Confidence 356888887776555555566666666 67888888775
No 135
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=54.22 E-value=2.2 Score=25.24 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=31.6
Q ss_pred CCCCeeeccccccc---ccee--cCCCCcccHHhHHHHh-------hcCCCCccccccc
Q 031282 61 EREEECGICLEICC---KIVL--PDCNHSMCMRCYRNWR-------ARSQSCPFCRDSL 107 (162)
Q Consensus 61 ~~~~~C~IC~~~~~---~~~~--~~CgH~fc~~Ci~~~~-------~~~~~CP~Cr~~~ 107 (162)
.++..|.+|..... +..+ -.|.-.||..|+.+-+ .....||.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 45678999997643 2222 3788899999987621 2456799986644
No 136
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=54.16 E-value=3.4 Score=27.22 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=18.2
Q ss_pred cceecCCCCcccHHhHHHHhhcCCCCccccccc
Q 031282 75 KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 107 (162)
Q Consensus 75 ~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 107 (162)
.+.-..||+.|. .-......||.|+..-
T Consensus 67 p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp CCBBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred CcChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 344567999982 1123456799998765
No 137
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.96 E-value=2 Score=27.46 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=30.9
Q ss_pred CCCCCeeecccccccccee---cCCCCcccHHhHHHHhh----cCCCCcccccc
Q 031282 60 IEREEECGICLEICCKIVL---PDCNHSMCMRCYRNWRA----RSQSCPFCRDS 106 (162)
Q Consensus 60 ~~~~~~C~IC~~~~~~~~~---~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~ 106 (162)
..++..|.||...-....+ -.|...||..|+.+=+. ....||.|...
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3556789999876432222 36788899999875222 35569999664
No 138
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.41 E-value=7.1 Score=22.96 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=26.1
Q ss_pred CCeeecccccccc----ceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 63 EEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 63 ~~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
...|.-|...+.. .++..-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCccc--------CEeccCCCcCC
Confidence 3468888877764 44445677777766 67888887774
No 139
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=52.49 E-value=2.3 Score=24.75 Aligned_cols=45 Identities=20% Similarity=0.581 Sum_probs=28.9
Q ss_pred CCCeeecccccccccee-cCCCCcccHHhHHHHhh----cCCCCccccccc
Q 031282 62 REEECGICLEICCKIVL-PDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 107 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~-~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 107 (162)
.+..|.+|...- +-+. -.|...||..|+.+-+. ....||.|....
T Consensus 4 ~~~~C~vC~~~g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSG-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCS-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCC-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 456799998742 2111 36788899999875222 345688886544
No 140
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.32 E-value=9.6 Score=22.96 Aligned_cols=37 Identities=14% Similarity=0.377 Sum_probs=27.7
Q ss_pred Ceeeccccccc--cceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 64 EECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 64 ~~C~IC~~~~~--~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
..|+.|...+. +.++..-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDC--------FTCSNCKQVIG 54 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTT--------CCCSSSCCCCT
T ss_pred CcCccCCcccccCceEEEECcccccccc--------CchhhCCCccC
Confidence 57889988887 444555677777777 67888988885
No 141
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=50.26 E-value=27 Score=22.75 Aligned_cols=42 Identities=24% Similarity=0.471 Sum_probs=25.8
Q ss_pred CCeeeccccccc-------ccee--cCCCCcccHHhHHH-------HhhcCCCCcccc
Q 031282 63 EEECGICLEICC-------KIVL--PDCNHSMCMRCYRN-------WRARSQSCPFCR 104 (162)
Q Consensus 63 ~~~C~IC~~~~~-------~~~~--~~CgH~fc~~Ci~~-------~~~~~~~CP~Cr 104 (162)
...|.+|+..-. +..+ ..|+..||..|+.. .......||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 456888876421 1122 47999999999942 123455677664
No 142
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.13 E-value=6.2 Score=23.88 Aligned_cols=38 Identities=21% Similarity=0.489 Sum_probs=26.8
Q ss_pred CCeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 63 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 63 ~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
...|+-|...+.+.++..-+..||..| ..|..|..++.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT--------CBCSSSCCBCT
T ss_pred CCccccCCCeecceeEEECCccccHHh--------cCcccCCCccC
Confidence 456888887777655555566677666 67888888875
No 143
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.03 E-value=6.4 Score=23.82 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=27.1
Q ss_pred CeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 64 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 64 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
..|+.|...+...++..-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDC--------FVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT--------SSCSSSCCCCC
T ss_pred CcCccccCEeccceEEECCceeCccC--------CccccCCCCCC
Confidence 37888888777555555666777766 67888988875
No 144
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=48.46 E-value=3.7 Score=33.09 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=0.0
Q ss_pred CCCeeeccccccccc----eecCCCCcccHHhHHHH
Q 031282 62 REEECGICLEICCKI----VLPDCNHSMCMRCYRNW 93 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~----~~~~CgH~fc~~Ci~~~ 93 (162)
+...|..|...|.-. ....||+.||..|...+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~ 409 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNK 409 (434)
T ss_dssp ------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCe
Confidence 356899999887622 22479999999998654
No 145
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.25 E-value=7.4 Score=23.21 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=25.9
Q ss_pred Ceeecccccccc----ceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 64 EECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 64 ~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
..|+.|...+.. .++..-+..||..| ..|..|+.++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCC
Confidence 468888887774 44455566777777 67888887774
No 146
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=48.07 E-value=12 Score=22.51 Aligned_cols=45 Identities=16% Similarity=0.418 Sum_probs=28.4
Q ss_pred CCCCeeeccccccccceecC-----CC-CcccHHhHHHHh--hcCCCCccccccc
Q 031282 61 EREEECGICLEICCKIVLPD-----CN-HSMCMRCYRNWR--ARSQSCPFCRDSL 107 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~-----Cg-H~fc~~Ci~~~~--~~~~~CP~Cr~~~ 107 (162)
.+...| +|...... .++. |. ..||..|+.--. .....||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~g-~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCS-SEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCC-CEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 345677 89875432 3443 55 589999986211 1356799997654
No 147
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.77 E-value=6.2 Score=23.00 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=22.9
Q ss_pred CeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 64 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 64 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
..|+-|...+....+..-+..||..| ..|..|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECTTT--------TBCTTTCCBCT
T ss_pred CCCcccCCEeCcceEEECccccccCc--------CEECCCCCCCC
Confidence 46777777665444444455566655 56777777764
No 148
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.90 E-value=9.8 Score=22.79 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=26.6
Q ss_pred CeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 64 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 64 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
..|+.|...+....+..-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCcEEEECCchhhhhh--------CCcccCCCcCC
Confidence 56888887776555555666777766 67888888874
No 149
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=46.74 E-value=9 Score=33.84 Aligned_cols=49 Identities=24% Similarity=0.560 Sum_probs=36.1
Q ss_pred CCCCeeeccccccccc----------eecCCCCcc--------------------cHHhHHHHhh--------cCCCCcc
Q 031282 61 EREEECGICLEICCKI----------VLPDCNHSM--------------------CMRCYRNWRA--------RSQSCPF 102 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~----------~~~~CgH~f--------------------c~~Ci~~~~~--------~~~~CP~ 102 (162)
.+-..|+-|+..+.+| ..+.||-.| |..|..++.. +...||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 3557899999888764 225677777 9999998765 3457999
Q ss_pred ccccccc
Q 031282 103 CRDSLRR 109 (162)
Q Consensus 103 Cr~~~~~ 109 (162)
|--.+..
T Consensus 184 CGP~l~l 190 (772)
T 4g9i_A 184 CGPSYRL 190 (772)
T ss_dssp TSCCEEE
T ss_pred CCceEEE
Confidence 9777643
No 150
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=46.53 E-value=1.2 Score=28.02 Aligned_cols=28 Identities=29% Similarity=0.771 Sum_probs=19.6
Q ss_pred eeccccccc-----cceec-CCCCcccHHhHHHH
Q 031282 66 CGICLEICC-----KIVLP-DCNHSMCMRCYRNW 93 (162)
Q Consensus 66 C~IC~~~~~-----~~~~~-~CgH~fc~~Ci~~~ 93 (162)
||-|...+. ..+.- .|++.||..|-.+|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 776655433 12343 59999999999888
No 151
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.14 E-value=7.3 Score=23.20 Aligned_cols=38 Identities=16% Similarity=0.376 Sum_probs=27.0
Q ss_pred CCeeeccccccc-cceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 63 EEECGICLEICC-KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 63 ~~~C~IC~~~~~-~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
...|+.|...+. ...+..-+..||..| ..|..|+.++.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC--------CCCCCCCCccC
Confidence 457999988777 334445566677766 77889988885
No 152
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=44.75 E-value=9.2 Score=33.18 Aligned_cols=47 Identities=23% Similarity=0.587 Sum_probs=33.9
Q ss_pred CCCCeeeccccccccc----------eecCCCCcc--------------------cHHhHHHHhh--------cCCCCcc
Q 031282 61 EREEECGICLEICCKI----------VLPDCNHSM--------------------CMRCYRNWRA--------RSQSCPF 102 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~----------~~~~CgH~f--------------------c~~Ci~~~~~--------~~~~CP~ 102 (162)
.+-..|+-|+..+.+| ..+.||-.| |..|..++.. +...||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 4567888888777754 224667666 9999998765 3457999
Q ss_pred ccccc
Q 031282 103 CRDSL 107 (162)
Q Consensus 103 Cr~~~ 107 (162)
|--.+
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 97766
No 153
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=44.19 E-value=12 Score=20.86 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=24.3
Q ss_pred eeeccccccccc-eec----CCCCcccHHhHHHH----hhcCCCCcccc
Q 031282 65 ECGICLEICCKI-VLP----DCNHSMCMRCYRNW----RARSQSCPFCR 104 (162)
Q Consensus 65 ~C~IC~~~~~~~-~~~----~CgH~fc~~Ci~~~----~~~~~~CP~Cr 104 (162)
.|.+|.....+. ..+ .|...||..|+.-- ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 467787766532 122 47778999997431 12567788884
No 154
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.97 E-value=8.9 Score=22.42 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=25.2
Q ss_pred Ceeecccccccc--ceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 64 EECGICLEICCK--IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 64 ~~C~IC~~~~~~--~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
..|+.|...+.. .++..-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETC--------FICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTT--------TCCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccC--------CcccccCCccC
Confidence 468888887773 34444566677666 66888887774
No 155
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=43.85 E-value=28 Score=21.11 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=29.2
Q ss_pred CCCeeeccccccc-ccee---cCCCCcccHHhHHHHh-----hcCCCCccccccc
Q 031282 62 REEECGICLEICC-KIVL---PDCNHSMCMRCYRNWR-----ARSQSCPFCRDSL 107 (162)
Q Consensus 62 ~~~~C~IC~~~~~-~~~~---~~CgH~fc~~Ci~~~~-----~~~~~CP~Cr~~~ 107 (162)
+...| +|..... .... -.|...||..|+.--. .....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 44556 8887663 2222 3688899999985311 1456799998765
No 156
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=43.83 E-value=13 Score=21.99 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=20.6
Q ss_pred CCCCeeeccccccccc---ee-c-CCCCcccHHhHH
Q 031282 61 EREEECGICLEICCKI---VL-P-DCNHSMCMRCYR 91 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~---~~-~-~CgH~fc~~Ci~ 91 (162)
.....|++|...+.+- +. - .|.-.||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3456899999887532 11 2 678889999983
No 157
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=43.25 E-value=12 Score=24.66 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=33.1
Q ss_pred CCCeeecccccccc---ceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 62 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 62 ~~~~C~IC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
+-+.|..|...+.. .....=|..||..|..+.......|..|..+|.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 45888899888852 344556778999998775443337888888874
No 158
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=43.05 E-value=9.6 Score=24.32 Aligned_cols=45 Identities=16% Similarity=0.418 Sum_probs=28.2
Q ss_pred CCCCeeeccccccccceecC-----CC-CcccHHhHHHHh--hcCCCCccccccc
Q 031282 61 EREEECGICLEICCKIVLPD-----CN-HSMCMRCYRNWR--ARSQSCPFCRDSL 107 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~~-----Cg-H~fc~~Ci~~~~--~~~~~CP~Cr~~~ 107 (162)
.+...| +|...... .++. |. ..||..|+.--. .....||.|+...
T Consensus 34 ~e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 345667 99876542 3343 55 579999986211 1356799997654
No 159
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=42.38 E-value=10 Score=23.17 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=29.4
Q ss_pred CCCeeeccccccccceec-----CCCCcccHHhHHHHhh---------cCCCCccccccc
Q 031282 62 REEECGICLEICCKIVLP-----DCNHSMCMRCYRNWRA---------RSQSCPFCRDSL 107 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~~-----~CgH~fc~~Ci~~~~~---------~~~~CP~Cr~~~ 107 (162)
....| ||........++ .|...||..|+.--.. ....||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 45677 898874443332 5778999999853211 356799997643
No 160
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=41.92 E-value=4.5 Score=24.27 Aligned_cols=44 Identities=18% Similarity=0.513 Sum_probs=28.0
Q ss_pred CCCCeeeccccccccceec---CCCCcccHHhHHHHhh---cCCCCccccc
Q 031282 61 EREEECGICLEICCKIVLP---DCNHSMCMRCYRNWRA---RSQSCPFCRD 105 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~---~CgH~fc~~Ci~~~~~---~~~~CP~Cr~ 105 (162)
.+...| ||........++ .|...||..|+.--.. ....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 355678 898765543333 5778899999754221 3456888854
No 161
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.51 E-value=9.6 Score=22.82 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=25.6
Q ss_pred CeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 64 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 64 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
..|+.|...+....+..-+..||..| ..|..|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLSAMDTVWHPEC--------FVCGDCFTSFS 52 (80)
T ss_dssp CBCTTTCCBCCSSCEEETTEEECTTT--------CBCSSSCCBSC
T ss_pred CccccCCCeecceeEEECCCeEecCc--------CChhhCCCCCC
Confidence 46888877776554444555666665 67888888885
No 162
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=40.90 E-value=11 Score=33.29 Aligned_cols=48 Identities=23% Similarity=0.496 Sum_probs=34.9
Q ss_pred CCCCeeeccccccccc----------eecCCCCcc--------------------cHHhHHHHhh--------cCCCCcc
Q 031282 61 EREEECGICLEICCKI----------VLPDCNHSM--------------------CMRCYRNWRA--------RSQSCPF 102 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~----------~~~~CgH~f--------------------c~~Ci~~~~~--------~~~~CP~ 102 (162)
.+-..|+-|+..+.+| ..+.||-.| |..|..++.. +...||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 3557899999888764 224677555 9999999765 3457999
Q ss_pred cccccc
Q 031282 103 CRDSLR 108 (162)
Q Consensus 103 Cr~~~~ 108 (162)
|--.+.
T Consensus 189 CGP~l~ 194 (761)
T 3vth_A 189 CGPSLS 194 (761)
T ss_dssp TSCCEE
T ss_pred cCCeeE
Confidence 977664
No 163
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=40.88 E-value=4.4 Score=25.03 Aligned_cols=41 Identities=20% Similarity=0.428 Sum_probs=25.1
Q ss_pred eeeccccccccceec---CCCCcccHHhHHHHhh----cC-CCCccccc
Q 031282 65 ECGICLEICCKIVLP---DCNHSMCMRCYRNWRA----RS-QSCPFCRD 105 (162)
Q Consensus 65 ~C~IC~~~~~~~~~~---~CgH~fc~~Ci~~~~~----~~-~~CP~Cr~ 105 (162)
.|.+|...-....++ .|...||..|+.+-+. .. ..||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 455665543333333 6788899999886332 23 67888865
No 164
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=40.75 E-value=8.5 Score=27.45 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=27.7
Q ss_pred CCCeeecccccccc---ceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 62 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 62 ~~~~C~IC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
+-+.|..|...+.. .....=|..||..|..+.+.....|+.|..++.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 34677777776653 333445667777776654332225777766663
No 165
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.63 E-value=15 Score=22.01 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=25.9
Q ss_pred Ceeeccccccc--cceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 64 EECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 64 ~~C~IC~~~~~--~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
..|..|...+. ..++..-+..||..| ..|-.|..++.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEGC--------FRCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTTT--------SBCTTTCCBCS
T ss_pred CcCccCCCccccCcEEEEeCCccccccC--------CeecCCCCccC
Confidence 47888888777 334444566777766 67888888775
No 166
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=40.40 E-value=5.1 Score=28.27 Aligned_cols=46 Identities=20% Similarity=0.390 Sum_probs=29.8
Q ss_pred CCCCeeecccccccc-cee---cCCCCcccHHhHHHH--h---hcCCCCccccccc
Q 031282 61 EREEECGICLEICCK-IVL---PDCNHSMCMRCYRNW--R---ARSQSCPFCRDSL 107 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~-~~~---~~CgH~fc~~Ci~~~--~---~~~~~CP~Cr~~~ 107 (162)
.+...| +|.....+ ... -.|...||..|+.-- . .....||.|+..-
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 355678 99876532 222 367889999998531 1 2466899997643
No 167
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=39.97 E-value=9.9 Score=22.58 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=23.7
Q ss_pred CCCeeeccccccccc-eecCCCCcccH-HhHHHHhhcCCCCccccc
Q 031282 62 REEECGICLEICCKI-VLPDCNHSMCM-RCYRNWRARSQSCPFCRD 105 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~-~~~~CgH~fc~-~Ci~~~~~~~~~CP~Cr~ 105 (162)
+-+.|..|...+... ....=|..||. .|..+. ....|..|..
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~--f~~~C~~C~~ 69 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAM--FGPKGFGRGG 69 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHH--SSCCCSSCCC
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHH--hCccCCCcCC
Confidence 346777777766642 33344566777 476543 2345666653
No 168
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=39.37 E-value=15 Score=24.22 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=18.8
Q ss_pred CCCeeeccccccc--cceecCCCCcccHHhHHHHh
Q 031282 62 REEECGICLEICC--KIVLPDCNHSMCMRCYRNWR 94 (162)
Q Consensus 62 ~~~~C~IC~~~~~--~~~~~~CgH~fc~~Ci~~~~ 94 (162)
+-+.|..|...+. ......=|..||..|....+
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWT 69 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHh
Confidence 3466777766663 22334446667777766544
No 169
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.32 E-value=19 Score=21.23 Aligned_cols=40 Identities=13% Similarity=0.319 Sum_probs=28.3
Q ss_pred CCCeeeccccccc--cceecCCCCcccHHhHHHHhhcCCCCccccccccc
Q 031282 62 REEECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 109 (162)
Q Consensus 62 ~~~~C~IC~~~~~--~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 109 (162)
....|+-|...+. +.++..-|..||..| ..|-.|..++..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEeCccEecccc--------CeECCCCCCCCC
Confidence 4568999988875 344445566777766 678889888853
No 170
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=38.22 E-value=7.1 Score=23.50 Aligned_cols=41 Identities=20% Similarity=0.425 Sum_probs=25.5
Q ss_pred eeeccccccccceec---CCCCcccHHhHHHHhh----c-CCCCccccc
Q 031282 65 ECGICLEICCKIVLP---DCNHSMCMRCYRNWRA----R-SQSCPFCRD 105 (162)
Q Consensus 65 ~C~IC~~~~~~~~~~---~CgH~fc~~Ci~~~~~----~-~~~CP~Cr~ 105 (162)
.|.+|...-....++ .|...||..|+.+=+. . ...||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456776533222232 6788999999985222 2 557888865
No 171
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=37.63 E-value=7.1 Score=29.28 Aligned_cols=41 Identities=20% Similarity=0.438 Sum_probs=23.6
Q ss_pred eeecccccccccee---cCCCCcccHHhHHHHhh----c-CCCCccccc
Q 031282 65 ECGICLEICCKIVL---PDCNHSMCMRCYRNWRA----R-SQSCPFCRD 105 (162)
Q Consensus 65 ~C~IC~~~~~~~~~---~~CgH~fc~~Ci~~~~~----~-~~~CP~Cr~ 105 (162)
.|.+|...-....+ -.|...||..|+.+=+. . ...||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57788753222222 36888999999986222 2 457999965
No 172
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=37.30 E-value=12 Score=22.14 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=26.7
Q ss_pred Ceeecccccccc-----ceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 64 EECGICLEICCK-----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 64 ~~C~IC~~~~~~-----~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
..|+-|...+.. .++..-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 57 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYC--------FHCKKCSVNLA 57 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTT--------CBCSSSCCBCT
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCccc--------CEehhcCCCCC
Confidence 578888887774 34444566677766 77999988885
No 173
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=37.05 E-value=12 Score=24.94 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=29.2
Q ss_pred CCeeeccccccccc-eecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 63 EEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 63 ~~~C~IC~~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
...|.-|...+... ++..-+..||..| +.|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc--------cCcCcCCCccc
Confidence 46899999888765 3555677788777 77999998885
No 174
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=36.69 E-value=1.8 Score=27.24 Aligned_cols=39 Identities=23% Similarity=0.646 Sum_probs=18.1
Q ss_pred CeeeccccccccceecCCCCcccHHhHHHHhhcCCCCccccccc
Q 031282 64 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 107 (162)
Q Consensus 64 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 107 (162)
..||.|...+.... ++.+|..|-..+.... .||-|..++
T Consensus 3 ~~CP~C~~~l~~~~----~~~~C~~C~~~~~~~a-fCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNG----DTAHCETCAKDFSLQA-LCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECS----SEEECTTTCCEEEEEE-ECSSSCSCC
T ss_pred CCCCCCCCccccCC----CceECccccccCCCcc-cCcchhhHH
Confidence 45777776554211 1223444433322222 566666655
No 175
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=36.01 E-value=27 Score=22.73 Aligned_cols=45 Identities=18% Similarity=0.378 Sum_probs=33.3
Q ss_pred CCCeeeccccccccc-eecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 62 REEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
+-+.|..|...+... ....=|..+|..|..+. ....|+.|..+|.
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCC
Confidence 348899998888753 33556778999997653 3567999999886
No 176
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.94 E-value=23 Score=21.33 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=28.0
Q ss_pred CCCCeeecccccccc-ceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 61 EREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
.....|.-|...+.. ..+..-+..||..| +.|-.|+.++.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEECCccccccc--------CCcCcCCCCcC
Confidence 345689999988763 33344566677766 77999988875
No 177
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.08 E-value=6.5 Score=24.21 Aligned_cols=41 Identities=20% Similarity=0.438 Sum_probs=26.2
Q ss_pred eeecccccccccee---cCCCCcccHHhHHHHhh----c-CCCCccccc
Q 031282 65 ECGICLEICCKIVL---PDCNHSMCMRCYRNWRA----R-SQSCPFCRD 105 (162)
Q Consensus 65 ~C~IC~~~~~~~~~---~~CgH~fc~~Ci~~~~~----~-~~~CP~Cr~ 105 (162)
.|.+|...-....+ -.|...||..|+.+=+. . ...||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 67888754332222 36788999999885222 2 457888864
No 178
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.74 E-value=22 Score=23.00 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=22.8
Q ss_pred CCCeeecccccccc---ceecCCCCcccHHhHHHHhh
Q 031282 62 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRA 95 (162)
Q Consensus 62 ~~~~C~IC~~~~~~---~~~~~CgH~fc~~Ci~~~~~ 95 (162)
+-+.|..|...+.+ .....=|..||..|..+.+.
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC
Confidence 45788888887763 33344567788888776443
No 179
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=34.25 E-value=21 Score=23.38 Aligned_cols=39 Identities=26% Similarity=0.462 Sum_probs=23.3
Q ss_pred eeeccccccc------c--c-ee-cCCCCcccHHhHHHH-------hhcCCCCccc
Q 031282 65 ECGICLEICC------K--I-VL-PDCNHSMCMRCYRNW-------RARSQSCPFC 103 (162)
Q Consensus 65 ~C~IC~~~~~------~--~-~~-~~CgH~fc~~Ci~~~-------~~~~~~CP~C 103 (162)
.|.+|+..-. + . +. ..|+..||..|+... ......||.|
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 58 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC 58 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc
Confidence 5788876441 1 1 11 478889999998642 1235566666
No 180
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=33.53 E-value=13 Score=21.42 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=24.3
Q ss_pred eeeccccccc--cceecCCCCccc--HHhHHHHhhcCCCCcccccccc
Q 031282 65 ECGICLEICC--KIVLPDCNHSMC--MRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 65 ~C~IC~~~~~--~~~~~~CgH~fc--~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
.|+-|...+. +..+..-|..|| ..| ..|-.|+.++.
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~C--------F~C~~C~~~L~ 43 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTEC--------FLCSCCSKCLI 43 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTT--------SBCTTTCCBCT
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCC--------EECCCCCCcCC
Confidence 5777777766 344555566677 666 67888887774
No 181
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=33.33 E-value=42 Score=23.16 Aligned_cols=44 Identities=11% Similarity=0.270 Sum_probs=29.3
Q ss_pred CCCeeeccccccccceecCCCCcccHHhHHHHhhcCCCCccccccc
Q 031282 62 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 107 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 107 (162)
+-+.|..|...+.......=|..||..|..+.. ...|..|..+|
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I 75 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGI 75 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBC
T ss_pred ccCccCCCCCcCCCCCcccCCeeeecccccccc--ccccccccccc
Confidence 458888898887754444557778888876532 34566666655
No 182
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.58 E-value=45 Score=19.99 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=27.3
Q ss_pred CCCCeeeccccccccc-eecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 61 EREEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
.....|.-|...+... .+..-+..||..| ..|-.|+..+.
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~C--------F~C~~C~~~L~ 53 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSC--------FRCHTCEATLW 53 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTT--------CBCSSSCCBCC
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCc--------CEEcCCCCCcC
Confidence 3456899999877532 2334566677776 67888888775
No 183
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.14 E-value=59 Score=18.62 Aligned_cols=35 Identities=26% Similarity=0.507 Sum_probs=16.8
Q ss_pred eeecccccccc--ceecCCCCcccHHhHHHHhhcCCCCccccccc
Q 031282 65 ECGICLEICCK--IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 107 (162)
Q Consensus 65 ~C~IC~~~~~~--~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 107 (162)
.|..|...+.. .++..-+..||..| ..|-.|..++
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L 43 (72)
T 1x61_A 7 GCGGCGEDVVGDGAGVVALDRVFHVGC--------FVCSTCRAQL 43 (72)
T ss_dssp CCSSSCSCCCSSSCCEECSSSEECTTT--------CBCSSSCCBC
T ss_pred CCccCCCccCCCceEEEECCCeEcccC--------CcccccCCcC
Confidence 45555554442 23333344455544 4455555555
No 184
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=30.68 E-value=6 Score=23.00 Aligned_cols=43 Identities=16% Similarity=0.421 Sum_probs=25.6
Q ss_pred CCCCeeeccccccccceec---C--CC-CcccHHhHHHHh--hcCCCCccccc
Q 031282 61 EREEECGICLEICCKIVLP---D--CN-HSMCMRCYRNWR--ARSQSCPFCRD 105 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~---~--Cg-H~fc~~Ci~~~~--~~~~~CP~Cr~ 105 (162)
.+...| +|..... ..++ . |. ..||..|+.--. .....||.|+.
T Consensus 7 ~e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 345566 8987543 2333 3 65 589999986211 13456888854
No 185
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=29.58 E-value=59 Score=19.59 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=24.1
Q ss_pred CCCeeecccccc-ccc--eecCCCCcccHHhHHHH
Q 031282 62 REEECGICLEIC-CKI--VLPDCNHSMCMRCYRNW 93 (162)
Q Consensus 62 ~~~~C~IC~~~~-~~~--~~~~CgH~fc~~Ci~~~ 93 (162)
.+..|.+|.+.. ... .-+.|.-.||..|+..+
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~ 63 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 63 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHhh
Confidence 467899998644 333 44789999999999873
No 186
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=27.95 E-value=23 Score=23.18 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=19.7
Q ss_pred CCeeeccccccccceecCCCCcccH
Q 031282 63 EEECGICLEICCKIVLPDCNHSMCM 87 (162)
Q Consensus 63 ~~~C~IC~~~~~~~~~~~CgH~fc~ 87 (162)
...|..|...-..-+-+.|||.+|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4579999876555567999999994
No 187
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.45 E-value=3.9 Score=26.59 Aligned_cols=40 Identities=23% Similarity=0.481 Sum_probs=26.6
Q ss_pred CeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 64 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 64 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
..||.|...+... =++.+|..|-.. ......||.|..++.
T Consensus 33 ~~CP~Cq~eL~~~----g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQD----NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEE----TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceec----CCEEECccccch-hhccccCcchhhHHH
Confidence 7899999876631 133447777443 223457999999885
No 188
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.28 E-value=21 Score=20.52 Aligned_cols=40 Identities=13% Similarity=0.315 Sum_probs=27.5
Q ss_pred CCCeeeccccccccc--eecCCCCcccHHhHHHHhhcCCCCccccccccc
Q 031282 62 REEECGICLEICCKI--VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 109 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 109 (162)
....|.-|...+... ++..-|..||..| ..|-.|..++..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~C--------F~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQC--------FVCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTT--------SSCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCC--------CcccCCCCCCCC
Confidence 345799998887733 4445566677766 678889888753
No 189
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=27.22 E-value=39 Score=23.65 Aligned_cols=43 Identities=12% Similarity=0.271 Sum_probs=23.3
Q ss_pred CeeeccccccccceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 64 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 64 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
+.|..|...+.......=|..||..|..+. ....|..|..++.
T Consensus 88 F~C~~C~~~L~~~~f~~~g~~yC~~~y~~~--f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 88 LKCSDCHVPLAERCFSRGESVYCKDDFFKR--FGTKCAACQLGIP 130 (182)
T ss_dssp TSCTTTCCCCSSCCEEETTEEECHHHHHHT--TSCCCTTTCCCCC
T ss_pred CccCCCCCccCCCceeECCEeeecCccccc--cccccccCCCccC
Confidence 455555554443222233455677775542 2456888877774
No 190
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.04 E-value=66 Score=19.56 Aligned_cols=39 Identities=21% Similarity=0.515 Sum_probs=25.6
Q ss_pred CCCeeecccccccc-ceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 62 REEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 62 ~~~~C~IC~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
....|.-|...+.. ..+..-+..||..| ..|-.|..++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 53 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISC--------FRCSYCNNKLS 53 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTT--------CBCTTTCCBCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCC--------CeeCCCCCCCC
Confidence 34578888877763 23345566677766 66777877775
No 191
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=26.19 E-value=3.8 Score=19.26 Aligned_cols=11 Identities=27% Similarity=1.041 Sum_probs=7.5
Q ss_pred ccHHhHHHHhh
Q 031282 85 MCMRCYRNWRA 95 (162)
Q Consensus 85 fc~~Ci~~~~~ 95 (162)
||..|-.+|+.
T Consensus 7 fcetcskpwlv 17 (26)
T 1loi_A 7 FCETCSKPWLV 17 (26)
T ss_dssp HHHTSSCTTGG
T ss_pred HHHhcCCchhh
Confidence 77777776653
No 192
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=26.06 E-value=43 Score=20.74 Aligned_cols=45 Identities=20% Similarity=0.402 Sum_probs=31.9
Q ss_pred CCCeeeccccccccc-eecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 62 REEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
+-+.|..|...+... ....=|..||..|..+. ....|..|..+|.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE--DSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC--CCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh--cCCccccCCCccc
Confidence 457888998887643 33455778999886432 3568999998885
No 193
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=23.85 E-value=9 Score=22.24 Aligned_cols=42 Identities=17% Similarity=0.445 Sum_probs=25.0
Q ss_pred CCCeeeccccccccceec---C--CC-CcccHHhHHHHh--hcCCCCccccc
Q 031282 62 REEECGICLEICCKIVLP---D--CN-HSMCMRCYRNWR--ARSQSCPFCRD 105 (162)
Q Consensus 62 ~~~~C~IC~~~~~~~~~~---~--Cg-H~fc~~Ci~~~~--~~~~~CP~Cr~ 105 (162)
+...| ||..... ..++ . |. ..||..|+.--. .....||.|+.
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 44556 8987543 3343 3 55 579999986211 13456888854
No 194
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=23.37 E-value=88 Score=19.05 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=19.0
Q ss_pred CCCeeeccccccc-cceecCCCCcccHH
Q 031282 62 REEECGICLEICC-KIVLPDCNHSMCMR 88 (162)
Q Consensus 62 ~~~~C~IC~~~~~-~~~~~~CgH~fc~~ 88 (162)
....|..|...+. .+..-.||..||..
T Consensus 24 ~~nRC~~CrKkvgL~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCRCGNLFCGL 51 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeecCCCCEechh
Confidence 4568999987644 24455699999873
No 195
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=23.17 E-value=45 Score=20.95 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=20.2
Q ss_pred CCCeeecccccccc--ceecCCCCcccHH
Q 031282 62 REEECGICLEICCK--IVLPDCNHSMCMR 88 (162)
Q Consensus 62 ~~~~C~IC~~~~~~--~~~~~CgH~fc~~ 88 (162)
....|..|.....- +..-.||..||..
T Consensus 24 ~~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred cCccchhhCCeecccCCeEcCCCCEeccc
Confidence 34689999876553 6666799999984
No 196
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.61 E-value=23 Score=24.61 Aligned_cols=25 Identities=16% Similarity=0.465 Sum_probs=15.9
Q ss_pred cCCCCcccHHhHHHHhhcCCCCccccccccc
Q 031282 79 PDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 109 (162)
Q Consensus 79 ~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 109 (162)
..|||.|=.. .....||.|..++.+
T Consensus 136 ~~Cg~~~~~~------~~~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 136 IGCGRKFSTL------PPGGVCPDCGSKVKL 160 (165)
T ss_dssp SSSCCEESSC------CGGGBCTTTCCBEEE
T ss_pred CCCCCcccCC------CCCCcCCCCCCccee
Confidence 4678776321 223479999988754
No 197
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=22.61 E-value=61 Score=21.10 Aligned_cols=44 Identities=20% Similarity=0.435 Sum_probs=26.4
Q ss_pred CCCCeeeccccccccceec---CCCCcccHHhHHHHhh----cCCCCccccccc
Q 031282 61 EREEECGICLEICCKIVLP---DCNHSMCMRCYRNWRA----RSQSCPFCRDSL 107 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~---~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 107 (162)
..+..|.+|.+. .+-+.= .|...||..|+. +. ....||.|.-.+
T Consensus 13 ~~~~~C~~C~~~-G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 13 MHEDYCFQCGDG-GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SSCSSCTTTCCC-SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCcCCCC-CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 456679999842 222222 477789999986 22 234577665443
No 198
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=21.76 E-value=16 Score=23.26 Aligned_cols=43 Identities=16% Similarity=0.423 Sum_probs=25.6
Q ss_pred CCCCeeeccccccccceec---C--CC-CcccHHhHHHH--hhcCCCCcc-ccc
Q 031282 61 EREEECGICLEICCKIVLP---D--CN-HSMCMRCYRNW--RARSQSCPF-CRD 105 (162)
Q Consensus 61 ~~~~~C~IC~~~~~~~~~~---~--Cg-H~fc~~Ci~~~--~~~~~~CP~-Cr~ 105 (162)
.+...| ||....... ++ . |. ..||..|+.-- ......||. |+.
T Consensus 24 ~~~~yC-iC~~~~~g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYGP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCSSS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCCCC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 345667 898754332 33 3 33 57999998521 113567999 864
No 199
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=21.62 E-value=16 Score=21.93 Aligned_cols=38 Identities=24% Similarity=0.458 Sum_probs=21.8
Q ss_pred CCeeeccccccc-cceecCCCCcccHHhHHHHhhcCCCCcccccccc
Q 031282 63 EEECGICLEICC-KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 108 (162)
Q Consensus 63 ~~~C~IC~~~~~-~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 108 (162)
...|..|...+. ...+..-+..||..| ..|-.|..++.
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 45 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCC--------FLCMVCRKNLD 45 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSS--------EECSSSCCEEC
T ss_pred CCcCcCcCccccCceeEEeCCccccccc--------CccCCCCCCCC
Confidence 346777777664 223334455565555 55777777664
Done!