Query 031283
Match_columns 162
No_of_seqs 112 out of 1280
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 11:54:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 8E-37 1.7E-41 233.7 6.4 147 1-147 1-176 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 1.2E-34 2.7E-39 191.3 3.5 76 2-79 1-76 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 5.6E-32 1.2E-36 181.1 4.8 75 2-77 1-75 (83)
4 smart00432 MADS MADS domain. 100.0 1.5E-31 3.2E-36 167.4 4.1 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 7.4E-31 1.6E-35 164.3 3.3 59 2-60 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 1.3E-28 2.9E-33 149.4 -0.6 51 9-59 1-51 (51)
7 KOG0015 Regulator of arginine 99.8 2.4E-20 5.3E-25 147.9 2.5 75 2-76 63-144 (338)
8 COG5068 ARG80 Regulator of arg 99.4 4.6E-14 1E-18 116.7 3.3 61 1-61 81-141 (412)
9 PF01486 K-box: K-box region; 99.4 3.1E-13 6.8E-18 93.3 6.8 79 71-149 1-79 (100)
10 PRK04098 sec-independent trans 94.1 0.07 1.5E-06 39.7 3.6 85 42-137 14-102 (158)
11 PF05812 Herpes_BLRF2: Herpesv 84.7 10 0.00022 26.8 7.8 59 83-141 4-66 (118)
12 PHA03155 hypothetical protein; 84.1 11 0.00024 26.4 7.6 59 82-140 8-66 (115)
13 PHA03162 hypothetical protein; 83.5 12 0.00027 26.9 7.8 59 82-140 13-75 (135)
14 PF10584 Proteasome_A_N: Prote 83.4 0.18 3.9E-06 25.3 -1.1 13 44-56 4-16 (23)
15 PF07106 TBPIP: Tat binding pr 83.3 16 0.00035 27.0 9.1 55 85-140 112-166 (169)
16 PF06698 DUF1192: Protein of u 82.6 3.2 7E-05 25.7 4.1 34 107-140 12-45 (59)
17 PF07106 TBPIP: Tat binding pr 81.0 14 0.00031 27.3 7.9 59 81-143 78-136 (169)
18 PRK01919 tatB sec-independent 79.8 3.4 7.5E-05 31.0 4.1 30 43-76 15-44 (169)
19 PRK04654 sec-independent trans 76.6 1.3 2.8E-05 34.5 1.1 28 43-74 15-42 (214)
20 PRK01371 sec-independent trans 73.4 2.1 4.4E-05 31.2 1.4 29 42-74 14-42 (137)
21 PHA02592 52 DNA topisomerase I 71.8 27 0.0006 30.3 8.1 30 41-74 297-326 (439)
22 PRK00708 sec-independent trans 67.9 7.9 0.00017 30.2 3.7 36 34-75 8-43 (209)
23 smart00787 Spc7 Spc7 kinetocho 67.5 44 0.00094 27.6 8.2 32 111-142 196-227 (312)
24 KOG4196 bZIP transcription fac 64.4 13 0.00029 26.7 3.9 28 81-108 80-107 (135)
25 PF10491 Nrf1_DNA-bind: NLS-bi 60.9 17 0.00038 28.2 4.3 42 31-74 44-88 (214)
26 PF08700 Vps51: Vps51/Vps67; 60.6 42 0.00092 21.5 6.8 64 58-128 2-67 (87)
27 PF08317 Spc7: Spc7 kinetochor 60.0 48 0.001 27.3 7.2 33 111-143 201-233 (325)
28 PF14257 DUF4349: Domain of un 58.9 88 0.0019 24.7 8.3 90 60-156 103-201 (262)
29 PRK00182 tatB sec-independent 58.6 4.4 9.6E-05 30.2 0.8 37 34-76 9-45 (160)
30 PF14775 NYD-SP28_assoc: Sperm 57.5 22 0.00048 22.0 3.7 39 64-108 21-59 (60)
31 KOG3079 Uridylate kinase/adeny 57.1 88 0.0019 24.1 8.6 46 96-159 72-122 (195)
32 PF15372 DUF4600: Domain of un 55.3 76 0.0017 22.8 7.5 46 91-136 17-71 (129)
33 PRK03100 sec-independent trans 54.7 7.3 0.00016 28.3 1.3 29 42-74 15-43 (136)
34 TIGR01410 tatB twin arginine-t 54.2 9.2 0.0002 25.1 1.6 30 43-76 14-43 (80)
35 PRK01770 sec-independent trans 53.9 14 0.00031 27.8 2.8 37 34-76 8-44 (171)
36 KOG4603 TBP-1 interacting prot 52.8 1E+02 0.0022 23.5 7.1 61 83-145 117-177 (201)
37 PF02416 MttA_Hcf106: mttA/Hcf 52.8 1.5 3.1E-05 26.6 -2.2 30 43-76 12-41 (53)
38 PF14009 DUF4228: Domain of un 52.5 13 0.00028 27.1 2.4 35 39-74 12-46 (181)
39 PF09941 DUF2173: Uncharacteri 51.6 12 0.00026 26.1 1.9 27 32-59 3-29 (108)
40 PF04645 DUF603: Protein of un 51.6 1E+02 0.0023 23.3 8.1 68 80-148 96-167 (181)
41 PLN03230 acetyl-coenzyme A car 51.2 69 0.0015 27.8 6.8 24 53-76 38-69 (431)
42 PF09781 NDUF_B5: NADH:ubiquin 50.8 52 0.0011 25.2 5.4 73 37-111 74-160 (187)
43 PRK14858 tatA twin arginine tr 50.2 7.1 0.00015 27.2 0.6 30 43-76 15-44 (108)
44 PF08432 Vfa1: AAA-ATPase Vps4 49.8 17 0.00037 27.5 2.7 61 39-103 11-83 (182)
45 PRK13824 replication initiatio 49.3 54 0.0012 28.1 5.9 94 41-137 108-234 (404)
46 PF14193 DUF4315: Domain of un 48.4 60 0.0013 21.5 4.8 17 114-130 46-62 (83)
47 COG4917 EutP Ethanolamine util 45.9 16 0.00036 26.5 1.9 26 34-59 58-83 (148)
48 PF02183 HALZ: Homeobox associ 45.6 44 0.00096 19.4 3.4 26 81-106 11-36 (45)
49 KOG0183 20S proteasome, regula 45.4 11 0.00025 29.5 1.1 16 41-56 4-19 (249)
50 TIGR03752 conj_TIGR03752 integ 45.0 1.9E+02 0.004 25.5 8.5 23 81-103 72-94 (472)
51 PF11460 DUF3007: Protein of u 44.5 22 0.00048 24.6 2.3 18 112-129 86-103 (104)
52 PRK10265 chaperone-modulator p 44.1 66 0.0014 21.8 4.7 77 32-109 10-98 (101)
53 PF07083 DUF1351: Protein of u 42.9 1.2E+02 0.0025 23.6 6.5 79 63-141 23-107 (215)
54 TIGR01411 tatAE twin arginine- 42.7 3.7 7.9E-05 24.2 -1.5 36 34-75 6-41 (47)
55 PRK01470 tatA twin arginine tr 42.4 3.9 8.4E-05 24.6 -1.4 30 43-76 14-43 (51)
56 PF03428 RP-C: Replication pro 42.0 1E+02 0.0022 23.3 5.9 64 41-107 96-169 (177)
57 COG4831 Roadblock/LC7 domain [ 41.9 23 0.00049 24.3 2.0 30 31-61 4-33 (109)
58 PF04977 DivIC: Septum formati 41.2 51 0.0011 20.6 3.7 28 81-108 23-50 (80)
59 PF09151 DUF1936: Domain of un 41.0 21 0.00046 19.2 1.4 24 35-58 3-26 (36)
60 PF06657 Cep57_MT_bd: Centroso 40.8 1E+02 0.0022 20.0 7.3 58 81-142 16-73 (79)
61 PRK14860 tatA twin arginine tr 39.5 4.8 0.0001 25.4 -1.4 37 34-76 8-44 (64)
62 COG4575 ElaB Uncharacterized c 39.3 1.3E+02 0.0028 20.8 6.4 30 113-142 31-60 (104)
63 PF09432 THP2: Tho complex sub 38.5 27 0.00059 25.1 2.1 19 56-75 33-51 (132)
64 cd02980 TRX_Fd_family Thioredo 37.7 24 0.00051 22.0 1.6 30 39-70 47-76 (77)
65 KOG4632 NADH:ubiquinone oxidor 37.4 1.1E+02 0.0023 23.0 5.1 53 57-111 101-153 (187)
66 PF06717 DUF1202: Protein of u 37.4 57 0.0012 26.7 4.0 36 81-116 151-186 (308)
67 TIGR01478 STEVOR variant surfa 37.0 1.5E+02 0.0033 24.3 6.4 45 7-73 25-69 (295)
68 COG1826 TatA Sec-independent p 36.4 9.5 0.00021 25.7 -0.5 30 43-76 15-44 (94)
69 KOG4445 Uncharacterized conser 36.2 1.3E+02 0.0028 25.1 5.8 76 28-109 100-185 (368)
70 cd00187 TOP4c DNA Topoisomeras 35.9 3E+02 0.0064 24.0 8.5 60 7-74 257-327 (445)
71 cd03063 TRX_Fd_FDH_beta TRX-li 35.3 33 0.00071 23.1 2.0 37 38-75 44-81 (92)
72 PF14263 DUF4354: Domain of un 35.1 12 0.00026 26.7 -0.1 42 11-57 41-82 (124)
73 PF12795 MscS_porin: Mechanose 35.0 2.2E+02 0.0047 22.2 9.3 78 64-141 16-103 (240)
74 PRK00888 ftsB cell division pr 34.5 71 0.0015 21.9 3.7 29 81-109 33-61 (105)
75 PRK14861 tatA twin arginine tr 33.7 7.5 0.00016 24.2 -1.2 36 34-75 9-44 (61)
76 PLN03128 DNA topoisomerase 2; 33.5 2.4E+02 0.0051 27.8 8.1 27 44-74 961-987 (1135)
77 PF14282 FlxA: FlxA-like prote 33.2 1.6E+02 0.0035 20.1 7.7 53 91-145 21-73 (106)
78 PRK09822 lipopolysaccharide co 33.0 33 0.00071 27.4 2.0 40 20-60 119-161 (269)
79 KOG0184 20S proteasome, regula 32.0 24 0.00051 27.9 1.0 21 36-56 3-23 (254)
80 PLN03229 acetyl-coenzyme A car 31.7 1.8E+02 0.0039 27.2 6.6 20 43-62 50-69 (762)
81 smart00415 HSF heat shock fact 31.6 36 0.00078 23.2 1.8 40 37-76 12-52 (105)
82 PRK03625 tatE twin arginine tr 31.6 7.1 0.00015 24.9 -1.6 30 43-76 15-44 (67)
83 cd01668 TGS_RelA_SpoT TGS_RelA 31.1 52 0.0011 19.1 2.3 26 45-71 1-26 (60)
84 COG5211 SSU72 RNA polymerase I 30.8 1.6E+02 0.0036 22.1 5.2 45 117-161 152-197 (197)
85 PRK00404 tatB sec-independent 30.6 43 0.00092 24.5 2.1 28 42-73 14-41 (141)
86 cd02988 Phd_like_VIAF Phosduci 30.2 58 0.0013 24.8 2.9 34 112-145 39-74 (192)
87 PF09403 FadA: Adhesion protei 30.1 2.1E+02 0.0045 20.5 8.2 56 84-139 54-109 (126)
88 smart00340 HALZ homeobox assoc 30.1 1.1E+02 0.0024 17.6 3.3 25 85-109 8-32 (44)
89 KOG3048 Molecular chaperone Pr 29.9 1.2E+02 0.0025 22.4 4.2 27 111-137 8-34 (153)
90 TIGR00012 L29 ribosomal protei 29.8 1.1E+02 0.0024 18.3 3.6 27 113-139 2-28 (55)
91 COG4588 AcfC Accessory coloniz 29.5 70 0.0015 25.2 3.2 36 34-76 12-47 (252)
92 PF06008 Laminin_I: Laminin Do 29.2 2.9E+02 0.0062 21.8 7.2 30 110-139 114-143 (264)
93 KOG4302 Microtubule-associated 29.2 3.5E+02 0.0077 24.9 8.0 32 112-143 153-184 (660)
94 COG0139 HisI Phosphoribosyl-AM 29.1 21 0.00046 25.0 0.3 39 16-54 49-96 (111)
95 PF06156 DUF972: Protein of un 28.9 1.7E+02 0.0036 20.2 4.8 25 82-106 29-53 (107)
96 KOG4637 Adaptor for phosphoino 28.8 46 0.001 28.4 2.3 41 33-75 367-412 (464)
97 COG3883 Uncharacterized protei 28.6 3.2E+02 0.0069 22.2 7.3 24 119-142 80-103 (265)
98 PF01955 CbiZ: Adenosylcobinam 28.6 62 0.0013 24.7 2.8 32 38-70 153-185 (191)
99 PF10623 PilI: Plasmid conjuga 27.8 80 0.0017 20.8 2.8 32 42-74 8-41 (83)
100 PTZ00108 DNA topoisomerase 2-l 27.6 3.9E+02 0.0085 27.0 8.5 89 45-137 963-1120(1388)
101 PF00383 dCMP_cyt_deam_1: Cyti 27.6 56 0.0012 21.5 2.2 32 28-59 7-42 (102)
102 cd08888 SRPBCC_PITPNA-B_like L 27.6 80 0.0017 25.5 3.3 28 109-136 230-257 (258)
103 PRK10132 hypothetical protein; 27.5 2.1E+02 0.0046 19.8 5.8 28 113-140 35-62 (108)
104 PHA00327 minor capsid protein 27.3 1.6E+02 0.0035 22.2 4.7 48 49-102 88-135 (187)
105 PF02824 TGS: TGS domain; Int 27.2 79 0.0017 19.1 2.7 27 45-72 1-27 (60)
106 PRK00191 tatA twin arginine tr 26.9 8.2 0.00018 25.7 -2.0 36 34-75 7-42 (84)
107 PF02009 Rifin_STEVOR: Rifin/s 26.7 41 0.0009 27.6 1.7 15 63-77 36-50 (299)
108 PRK11281 hypothetical protein; 26.7 6.2E+02 0.014 24.9 9.6 30 111-140 116-145 (1113)
109 PF13252 DUF4043: Protein of u 26.6 34 0.00074 28.6 1.2 29 32-60 271-299 (341)
110 PF04417 DUF501: Protein of un 26.5 2.5E+02 0.0054 20.3 5.7 38 39-76 7-48 (139)
111 PF13540 RCC1_2: Regulator of 26.5 36 0.00078 17.6 0.9 25 36-61 3-27 (30)
112 PF10112 Halogen_Hydrol: 5-bro 26.4 75 0.0016 24.0 3.0 53 23-77 94-151 (199)
113 TIGR01916 F420_cofE F420-0:gam 26.2 67 0.0015 25.7 2.7 30 33-62 133-162 (243)
114 KOG0971 Microtubule-associated 26.0 5.4E+02 0.012 25.0 8.6 58 79-136 322-388 (1243)
115 PRK00306 50S ribosomal protein 25.9 1.1E+02 0.0025 18.9 3.3 25 113-137 6-30 (66)
116 cd03064 TRX_Fd_NuoE TRX-like [ 25.9 40 0.00086 21.4 1.2 29 39-71 52-80 (80)
117 KOG4311 Histidinol dehydrogena 25.8 3.8E+02 0.0082 22.1 8.0 62 15-76 180-260 (359)
118 COG3411 Ferredoxin [Energy pro 25.7 54 0.0012 20.6 1.7 28 44-72 18-45 (64)
119 PF06020 Roughex: Drosophila r 25.6 34 0.00073 28.1 0.9 15 36-50 183-197 (334)
120 PF07407 Seadorna_VP6: Seadorn 25.5 2.5E+02 0.0055 23.7 5.9 29 83-111 33-61 (420)
121 PF07676 PD40: WD40-like Beta 25.2 54 0.0012 17.5 1.5 19 42-60 10-28 (39)
122 PF03670 UPF0184: Uncharacteri 25.2 1.4E+02 0.0031 19.8 3.7 20 83-102 34-53 (83)
123 PRK14859 tatA twin arginine tr 25.2 8.4 0.00018 24.2 -2.1 30 43-76 15-44 (63)
124 KOG4797 Transcriptional regula 25.1 1.6E+02 0.0034 20.6 4.0 50 80-129 57-110 (123)
125 PF11629 Mst1_SARAH: C termina 24.9 89 0.0019 18.6 2.4 27 112-138 4-34 (49)
126 PRK14857 tatA twin arginine tr 24.6 9.9 0.00022 25.6 -1.9 29 43-75 17-45 (90)
127 TIGR03274 methan_mark_7 putati 24.5 1.4E+02 0.003 24.5 4.2 25 25-51 140-164 (302)
128 PF10224 DUF2205: Predicted co 24.5 2.1E+02 0.0046 18.7 4.9 29 81-109 36-64 (80)
129 PF06574 FAD_syn: FAD syntheta 23.9 1.3E+02 0.0029 21.9 3.8 29 23-51 19-47 (157)
130 COG4888 Uncharacterized Zn rib 23.8 44 0.00096 23.0 1.1 58 1-61 1-62 (104)
131 COG3883 Uncharacterized protei 23.7 2.3E+02 0.005 22.9 5.3 69 80-157 57-125 (265)
132 KOG3850 Predicted membrane pro 23.7 4.5E+02 0.0098 22.7 7.2 100 47-147 246-370 (455)
133 cd01372 KISc_KIF4 Kinesin moto 23.4 52 0.0011 27.0 1.7 25 36-60 68-94 (341)
134 PF03938 OmpH: Outer membrane 23.1 2.8E+02 0.0061 19.7 8.4 70 63-136 23-93 (158)
135 KOG0432 Valyl-tRNA synthetase 22.8 3.5E+02 0.0076 26.0 6.9 24 82-105 930-953 (995)
136 KOG4603 TBP-1 interacting prot 22.8 3.5E+02 0.0076 20.6 7.4 53 85-141 89-141 (201)
137 KOG4643 Uncharacterized coiled 22.8 7.4E+02 0.016 24.4 9.2 26 32-57 138-163 (1195)
138 PF05852 DUF848: Gammaherpesvi 22.7 3.2E+02 0.0069 20.1 7.3 54 87-142 59-112 (146)
139 PRK10803 tol-pal system protei 22.6 1.2E+02 0.0025 24.3 3.5 69 32-103 9-82 (263)
140 PF00831 Ribosomal_L29: Riboso 22.5 71 0.0015 19.3 1.8 24 115-138 6-29 (58)
141 cd04751 Commd3 COMM_Domain con 22.4 1.3E+02 0.0029 20.1 3.3 22 115-136 70-91 (95)
142 TIGR02209 ftsL_broad cell divi 22.3 1.4E+02 0.0031 18.9 3.4 27 81-107 30-56 (85)
143 PHA02562 46 endonuclease subun 22.2 2.7E+02 0.0059 24.3 6.0 28 46-73 133-161 (562)
144 PF00225 Kinesin: Kinesin moto 21.9 46 0.001 27.1 1.1 24 36-59 69-94 (335)
145 TIGR02231 conserved hypothetic 21.9 5.4E+02 0.012 22.5 8.1 59 81-139 77-147 (525)
146 PF06518 DUF1104: Protein of u 21.9 2E+02 0.0043 19.4 4.0 29 104-132 48-76 (93)
147 PRK13169 DNA replication intia 21.9 2.7E+02 0.0059 19.4 4.8 27 81-107 28-54 (110)
148 PF09158 MotCF: Bacteriophage 21.9 40 0.00087 23.3 0.6 53 5-74 19-72 (103)
149 PF04065 Not3: Not1 N-terminal 21.8 4.1E+02 0.0089 21.0 8.4 67 64-136 24-91 (233)
150 cd01365 KISc_KIF1A_KIF1B Kines 21.8 88 0.0019 26.0 2.8 25 36-60 83-109 (356)
151 PF10666 Phage_Gp14: Phage pro 21.8 3.1E+02 0.0068 19.7 5.4 46 86-135 36-81 (140)
152 PF10226 DUF2216: Uncharacteri 21.7 3.8E+02 0.0083 20.7 8.2 34 113-146 98-131 (195)
153 PF06937 EURL: EURL protein; 21.7 1.5E+02 0.0033 24.1 3.9 36 110-145 213-248 (285)
154 PF08796 DUF1797: Protein of u 21.3 68 0.0015 20.4 1.5 19 39-57 24-42 (67)
155 cd00106 KISc Kinesin motor dom 21.3 91 0.002 25.3 2.7 23 37-59 74-98 (328)
156 PF12537 DUF3735: Protein of u 21.3 1.9E+02 0.0042 18.2 3.7 25 118-142 47-71 (72)
157 PRK09555 feoA ferrous iron tra 21.1 1.1E+02 0.0024 19.5 2.6 33 26-58 20-52 (74)
158 cd01366 KISc_C_terminal Kinesi 20.9 80 0.0017 25.8 2.3 25 36-60 72-98 (329)
159 PRK00153 hypothetical protein; 20.8 2.8E+02 0.006 18.7 6.6 34 114-147 61-95 (104)
160 PF04697 Pinin_SDK_N: pinin/SD 20.6 1.8E+02 0.0038 21.0 3.7 34 85-118 6-39 (134)
161 PF03962 Mnd1: Mnd1 family; I 20.6 3.8E+02 0.0083 20.3 8.9 9 54-62 54-62 (188)
162 PF10312 Cactin_mid: Conserved 20.5 92 0.002 23.8 2.4 21 113-133 140-160 (191)
163 PF03850 Tfb4: Transcription f 20.2 4.7E+02 0.01 21.1 8.1 113 35-159 39-154 (276)
164 cd00427 Ribosomal_L29_HIP Ribo 20.2 1.7E+02 0.0037 17.5 3.1 24 113-136 3-26 (57)
165 TIGR03007 pepcterm_ChnLen poly 20.1 5.7E+02 0.012 22.0 8.9 45 65-109 141-188 (498)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=8e-37 Score=233.71 Aligned_cols=147 Identities=34% Similarity=0.474 Sum_probs=115.7
Q ss_pred CCCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhhcccch
Q 031283 1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLW 80 (162)
Q Consensus 1 MgR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~~~~~ 80 (162)
|||+||+|++|+|+++|++||+|||+||||||+||||||||+||+|||||+|++|+||+|+..+.+++++|...+.....
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999976699999999876553211
Q ss_pred h-----hh------hhh--------------hhhhhhHHHHHHHHHH---HHHHhhhcCCCCCCCH-HHHHHHHHHHHHH
Q 031283 81 S-----SH------YEK--------------MLENLGAVEQVNRILK---KQIRQRMGESLNDLTL-EELTGLEQDILDG 131 (162)
Q Consensus 81 ~-----~~------~~~--------------lq~el~klk~~~~~l~---~~~~~~~g~~L~~Ls~-eeL~~Le~~Le~~ 131 (162)
. .. +.. .......++.....++ ...+.+.++++.+++. .+|..++.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~ 160 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS 160 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence 0 00 000 1111222222223322 2246777899999999 9999999999999
Q ss_pred HHHHHHHHHhhhhhhh
Q 031283 132 LKIIHECKVIKPYTLC 147 (162)
Q Consensus 132 L~~ir~RK~~l~~~~~ 147 (162)
+..++..+...+..+.
T Consensus 161 ~~~~~~~~~~~~~~~~ 176 (195)
T KOG0014|consen 161 LHNSRSSKSKPLSDSN 176 (195)
T ss_pred hcCCCCCCCcCCcchh
Confidence 9999998877665554
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=1.2e-34 Score=191.26 Aligned_cols=76 Identities=62% Similarity=0.949 Sum_probs=72.6
Q ss_pred CCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhhcccc
Q 031283 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDL 79 (162)
Q Consensus 2 gR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~~~~ 79 (162)
||+||+|++|+|+.+|++||+||++||||||.|||+||||+||+|||||+|++|+|++|+ +.+||+||.+.++.+.
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s--~~~vl~ry~~~~~~~~ 76 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS--MEKIIERYQKTSGSSL 76 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCC--HHHHHHHHHhcccccc
Confidence 899999999999999999999999999999999999999999999999999999999998 6899999999877543
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=5.6e-32 Score=181.07 Aligned_cols=75 Identities=41% Similarity=0.684 Sum_probs=71.5
Q ss_pred CCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhhcc
Q 031283 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRV 77 (162)
Q Consensus 2 gR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~~ 77 (162)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+.+.||+++. +..++++|...+..
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~~ 75 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSAL 75 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCHh
Confidence 8999999999999999999999999999999999999999999999999999999998875 89999999987663
No 4
>smart00432 MADS MADS domain.
Probab=99.97 E-value=1.5e-31 Score=167.38 Aligned_cols=59 Identities=68% Similarity=1.042 Sum_probs=58.2
Q ss_pred CCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCC
Q 031283 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60 (162)
Q Consensus 2 gR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p 60 (162)
||+||+|++|+|+++|++||+||++||+|||+|||+||||+||+|||||+|++|.||+|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999987
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=7.4e-31 Score=164.31 Aligned_cols=59 Identities=64% Similarity=1.014 Sum_probs=57.9
Q ss_pred CCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCC
Q 031283 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60 (162)
Q Consensus 2 gR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p 60 (162)
||+||+|++|+|+..|++||+||++||+|||+|||+||||+||+|||||+|+++.||+|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 79999999999999999999999999999999999999999999999999999999976
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.94 E-value=1.3e-28 Score=149.35 Aligned_cols=51 Identities=51% Similarity=0.812 Sum_probs=46.8
Q ss_pred eEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccC
Q 031283 9 KRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59 (162)
Q Consensus 9 k~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~ 59 (162)
|+|+|+..|++||+||++||||||.|||+||||+||+|||||+|++|+|++
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 579999999999999999999999999999999999999999999999985
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.79 E-value=2.4e-20 Score=147.86 Aligned_cols=75 Identities=37% Similarity=0.546 Sum_probs=66.4
Q ss_pred CCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCcc-------chHHHHHHHhhh
Q 031283 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPST-------TTKQLLDLYQKT 74 (162)
Q Consensus 2 gR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~-------~v~~ii~ry~~~ 74 (162)
||+||+|++|+|+..|.+||+|||.|+||||+|||||+|.+|-++|.|++|.+|+|+.|-- +=+.+|....+.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~ 142 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA 142 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999999999999999999863 124566655555
Q ss_pred hc
Q 031283 75 LR 76 (162)
Q Consensus 75 ~~ 76 (162)
++
T Consensus 143 pd 144 (338)
T KOG0015|consen 143 PD 144 (338)
T ss_pred CC
Confidence 54
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.44 E-value=4.6e-14 Score=116.69 Aligned_cols=61 Identities=38% Similarity=0.586 Sum_probs=60.0
Q ss_pred CCCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCc
Q 031283 1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61 (162)
Q Consensus 1 MgR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~ 61 (162)
|||+|+.|.+|+|+.+|.+||.||+.|++|||.||++|.|.+|.++|.|.+|.++.|+.|.
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~ 141 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPK 141 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCc
Confidence 7899999999999999999999999999999999999999999999999999999999987
No 9
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.44 E-value=3.1e-13 Score=93.34 Aligned_cols=79 Identities=33% Similarity=0.488 Sum_probs=73.8
Q ss_pred HhhhhcccchhhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 031283 71 YQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIKPYTLCAS 149 (162)
Q Consensus 71 y~~~~~~~~~~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l~~~~~~~ 149 (162)
|...++.+.+..+.+.++.++.+++.+++.++..+++++|++|++||++||..||.+|+.+|..||.||.+++.+++..
T Consensus 1 Y~~~~~~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~ 79 (100)
T PF01486_consen 1 YQKQSGTDLWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEE 79 (100)
T ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5666777888899999999999999999999999999999999999999999999999999999999999999887754
No 10
>PRK04098 sec-independent translocase; Provisional
Probab=94.08 E-value=0.07 Score=39.66 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=50.5
Q ss_pred cEEEEEecCCCCcccccCCccchHHHHHHHhhhhcc--cch--hhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCC
Q 031283 42 KVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRV--DLW--SSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLT 117 (162)
Q Consensus 42 ~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~~--~~~--~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls 117 (162)
=||+||||| ++++.... .+...+..|++.... +.. +..+..++++..+.++..+.....++ ..++
T Consensus 14 vVaLlvfGP-~KLP~~~r---~lGk~ir~~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~-------~~~~ 82 (158)
T PRK04098 14 VVAIIFLGP-DKLPQAMV---DIAKFFKAVKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLK-------KKLK 82 (158)
T ss_pred HHHHhhcCc-hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------hccC
Confidence 478999999 68887764 366777777776542 111 12334556666665555444333332 2377
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031283 118 LEELTGLEQDILDGLKIIHE 137 (162)
Q Consensus 118 ~eeL~~Le~~Le~~L~~ir~ 137 (162)
+++|.++...+......+.+
T Consensus 83 ~eel~~~~~~~~~~~~~~~~ 102 (158)
T PRK04098 83 FEELDDLKITAENEIKSIQD 102 (158)
T ss_pred hHHHHHHhhhhhhcchhHHH
Confidence 88888877655554444443
No 11
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=84.71 E-value=10 Score=26.83 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=44.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031283 83 HYEKMLENLGAVEQVNRILKKQIRQRMG----ESLNDLTLEELTGLEQDILDGLKIIHECKVI 141 (162)
Q Consensus 83 ~~~~lq~el~klk~~~~~l~~~~~~~~g----~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~ 141 (162)
..+.|..++.+|+.+|..|.+.++.--| .+=.-|+..+=+.+....-.+|...-.+|.+
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KIe 66 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKIE 66 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999998888776 5667889999998888888877766666533
No 12
>PHA03155 hypothetical protein; Provisional
Probab=84.08 E-value=11 Score=26.42 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=45.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031283 82 SHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKV 140 (162)
Q Consensus 82 ~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~ 140 (162)
...+.|..++.+|+-+|..|.+.+++--+++=.-|+..|=..+......+|...-.+|.
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~KI 66 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEKI 66 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999988866555444668999988888888887776655553
No 13
>PHA03162 hypothetical protein; Provisional
Probab=83.45 E-value=12 Score=26.90 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=45.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhhcCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031283 82 SHYEKMLENLGAVEQVNRILKKQIRQRMGES----LNDLTLEELTGLEQDILDGLKIIHECKV 140 (162)
Q Consensus 82 ~~~~~lq~el~klk~~~~~l~~~~~~~~g~~----L~~Ls~eeL~~Le~~Le~~L~~ir~RK~ 140 (162)
...+.|..++.+|+.+|..|.+.++.-.|.+ =..|+..|=+.+....-.+|...-.+|.
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKI 75 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKI 75 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999998887766654 2348999988888888877776665553
No 14
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=83.40 E-value=0.18 Score=25.32 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=10.2
Q ss_pred EEEEecCCCCccc
Q 031283 44 SILICSSTAKAHE 56 (162)
Q Consensus 44 a~ivfsp~gk~~~ 56 (162)
.+.+|||+|+++.
T Consensus 4 ~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 4 SITTFSPDGRLFQ 16 (23)
T ss_dssp STTSBBTTSSBHH
T ss_pred CceeECCCCeEEe
Confidence 3457999999874
No 15
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.34 E-value=16 Score=27.02 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=37.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031283 85 EKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKV 140 (162)
Q Consensus 85 ~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~ 140 (162)
+.+...+..++.++..++..+..+.+ +-...+.+|...++..........+.||.
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666655554 34447788888888888877777777774
No 16
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=82.57 E-value=3.2 Score=25.73 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=27.9
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031283 107 QRMGESLNDLTLEELTGLEQDILDGLKIIHECKV 140 (162)
Q Consensus 107 ~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~ 140 (162)
+..|.+|+.||++||.+-...|+.-+.+++.-..
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999888888887776543
No 17
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=80.99 E-value=14 Score=27.32 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=45.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031283 81 SSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIKP 143 (162)
Q Consensus 81 ~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l~ 143 (162)
+..+..+++++..++.++..++.++..+. ..++.+||......|+..+..+.+|-..+-
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~----~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLS----SEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888888777777765554 457899999999999999999998887654
No 18
>PRK01919 tatB sec-independent translocase; Provisional
Probab=79.83 E-value=3.4 Score=31.03 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=21.2
Q ss_pred EEEEEecCCCCcccccCCccchHHHHHHHhhhhc
Q 031283 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (162)
Q Consensus 43 va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~ 76 (162)
||+|||+| .+++...- .+...+.++++...
T Consensus 15 VALiV~GP-ekLP~~aR---tlGk~i~k~Rr~~~ 44 (169)
T PRK01919 15 VALVVIGP-ERLPRVAR---TAGALFGRAQRYIN 44 (169)
T ss_pred HHHheeCc-hHhHHHHH---HHHHHHHHHHHHHH
Confidence 79999999 57776654 35667777766543
No 19
>PRK04654 sec-independent translocase; Provisional
Probab=76.65 E-value=1.3 Score=34.48 Aligned_cols=28 Identities=4% Similarity=0.027 Sum_probs=19.8
Q ss_pred EEEEEecCCCCcccccCCccchHHHHHHHhhh
Q 031283 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (162)
Q Consensus 43 va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~ 74 (162)
|++|||+| .+++.... .+...+.++++.
T Consensus 15 VALlV~GP-erLPe~aR---tlGk~irk~R~~ 42 (214)
T PRK04654 15 VALVVLGP-ERLPKAAR---FAGLWVRRARMQ 42 (214)
T ss_pred HHHHhcCc-hHHHHHHH---HHHHHHHHHHHH
Confidence 78999999 57776654 356677776654
No 20
>PRK01371 sec-independent translocase; Provisional
Probab=73.44 E-value=2.1 Score=31.18 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=18.9
Q ss_pred cEEEEEecCCCCcccccCCccchHHHHHHHhhh
Q 031283 42 KVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (162)
Q Consensus 42 ~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~ 74 (162)
=|++|||+| .|++.+.. .+.+.+..|++.
T Consensus 14 vVallvfGP-eKLP~~ar---~lg~~ir~~R~~ 42 (137)
T PRK01371 14 VLAVLVFGP-DKLPKAAR---DAGRTLRQLREM 42 (137)
T ss_pred HHHhheeCc-hHHHHHHH---HHHHHHHHHHHH
Confidence 368999999 67776654 245555555543
No 21
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=71.83 E-value=27 Score=30.25 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=23.7
Q ss_pred ccEEEEEecCCCCcccccCCccchHHHHHHHhhh
Q 031283 41 AKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (162)
Q Consensus 41 v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~ 74 (162)
..+-+++|+++|++..|.+ +.+||..|-..
T Consensus 297 ~~~Nm~~~d~~g~~~~~~~----~~~Il~~f~~~ 326 (439)
T PHA02592 297 VSQNITVINENGKLKVYEN----AEDLIRDFVEI 326 (439)
T ss_pred eeeeEEEEecCCeeeecCC----HHHHHHHHHHH
Confidence 3577899999999998855 56899988654
No 22
>PRK00708 sec-independent translocase; Provisional
Probab=67.93 E-value=7.9 Score=30.17 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=23.0
Q ss_pred HhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhh
Q 031283 34 ELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTL 75 (162)
Q Consensus 34 ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~ 75 (162)
||-++.- |+||||+| .+++...- .+...+.++++..
T Consensus 8 ELlvI~v--VaLvV~GP-krLP~~~R---~lGk~v~k~R~~a 43 (209)
T PRK00708 8 ELLVIAI--VLIVVVGP-KDLPPMLR---AFGKMTARMRKMA 43 (209)
T ss_pred HHHHHHH--HHHhhcCc-hHHHHHHH---HHHHHHHHHHHHH
Confidence 4444433 78899999 56766543 3566777776654
No 23
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=67.53 E-value=44 Score=27.63 Aligned_cols=32 Identities=19% Similarity=0.071 Sum_probs=27.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031283 111 ESLNDLTLEELTGLEQDILDGLKIIHECKVIK 142 (162)
Q Consensus 111 ~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l 142 (162)
..++.++.++|..+...|......+..++..+
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999888888887765
No 24
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=64.38 E-value=13 Score=26.71 Aligned_cols=28 Identities=7% Similarity=0.235 Sum_probs=18.7
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 031283 81 SSHYEKMLENLGAVEQVNRILKKQIRQR 108 (162)
Q Consensus 81 ~~~~~~lq~el~klk~~~~~l~~~~~~~ 108 (162)
+..-..+++++++|+.++..+..+...+
T Consensus 80 E~~k~~L~qqv~~L~~e~s~~~~E~da~ 107 (135)
T KOG4196|consen 80 EKEKAELQQQVEKLKEENSRLRRELDAY 107 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567778888888888777665433
No 25
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=60.93 E-value=17 Score=28.24 Aligned_cols=42 Identities=10% Similarity=0.178 Sum_probs=32.7
Q ss_pred hhHHhhhhccccEEEEEecCCC---CcccccCCccchHHHHHHHhhh
Q 031283 31 KARELTILCDAKVSILICSSTA---KAHEYISPSTTTKQLLDLYQKT 74 (162)
Q Consensus 31 KA~ELs~LC~v~va~ivfsp~g---k~~~~~~p~~~v~~ii~ry~~~ 74 (162)
=..|++|-+|-.++++|.+|+- ....|+... .+.|+..|+..
T Consensus 44 ~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~p--L~~vv~~~~~~ 88 (214)
T PF10491_consen 44 TIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAP--LENVVRNLKPV 88 (214)
T ss_pred HHHHHHHhhhceeEEEEecCCCCCCceeeecchh--HHHHHHHHHHH
Confidence 3579999999999999999842 233577654 78899999865
No 26
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=60.65 E-value=42 Score=21.54 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=33.4
Q ss_pred cCCccchHHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCC--CHHHHHHHHHHH
Q 031283 58 ISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDL--TLEELTGLEQDI 128 (162)
Q Consensus 58 ~~p~~~v~~ii~ry~~~~~~~~~~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~L--s~eeL~~Le~~L 128 (162)
.+|+..+...+..+..... +..+..-..++..+....+.+++...+.+-.++ ..+++..++..+
T Consensus 2 ~~~~fd~~~~~~~~l~~~s-------~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~ 67 (87)
T PF08700_consen 2 DSENFDVDEYFKDLLKNSS-------IKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDL 67 (87)
T ss_pred CCCcCCHHHHHHHHHhhCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3455456666665544322 233444445556666666677777766543333 344444444443
No 27
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.04 E-value=48 Score=27.33 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=27.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031283 111 ESLNDLTLEELTGLEQDILDGLKIIHECKVIKP 143 (162)
Q Consensus 111 ~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l~ 143 (162)
..++.++.++|..+...|...-..+.+++..+.
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~ 233 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELA 233 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999988888887777654
No 28
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=58.95 E-value=88 Score=24.71 Aligned_cols=90 Identities=17% Similarity=0.161 Sum_probs=50.2
Q ss_pred CccchHHHHHHHhhhhcccch-------hhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Q 031283 60 PSTTTKQLLDLYQKTLRVDLW-------SSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGL 132 (162)
Q Consensus 60 p~~~v~~ii~ry~~~~~~~~~-------~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L 132 (162)
|...+..+++.........-. -.++..++.+++.++.+.++++ .++.. .=+++|+..+|..|...-
T Consensus 103 P~~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~----~ll~k---a~~~~d~l~ie~~L~~v~ 175 (262)
T PF14257_consen 103 PADKFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLL----ELLEK---AKTVEDLLEIERELSRVR 175 (262)
T ss_pred CHHHHHHHHHHHhccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHHHH
Confidence 333566666666543221110 1222344455555555544443 23321 118999999999887766
Q ss_pred HHHHHHHHhh--hhhhhccceeeEEE
Q 031283 133 KIIHECKVIK--PYTLCASSSTTVIV 156 (162)
Q Consensus 133 ~~ir~RK~~l--~~~~~~~s~~~~~~ 156 (162)
..|..-+.++ +.++.+-|++.+=|
T Consensus 176 ~eIe~~~~~~~~l~~~v~~sti~i~l 201 (262)
T PF14257_consen 176 SEIEQLEGQLKYLDDRVDYSTITISL 201 (262)
T ss_pred HHHHHHHHHHHHHHHhhceEEEEEEE
Confidence 6666665554 66677777776654
No 29
>PRK00182 tatB sec-independent translocase; Provisional
Probab=58.63 E-value=4.4 Score=30.21 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=26.0
Q ss_pred HhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhhc
Q 031283 34 ELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (162)
Q Consensus 34 ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~ 76 (162)
||-++. =||+|||+| ++++.+.. .+...+..|++...
T Consensus 9 EllvIl--vIaLlVfGP-erLP~~~r---~lg~~ir~~R~~~~ 45 (160)
T PRK00182 9 EILLLL--IVGLIVIGP-ERLPRLIE---DVRAALLAARTAIN 45 (160)
T ss_pred HHHHHH--HHHHHhcCc-hHHHHHHH---HHHHHHHHHHHHHH
Confidence 444443 378999999 68888764 46777888776544
No 30
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=57.47 E-value=22 Score=21.95 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=25.7
Q ss_pred hHHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 031283 64 TKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQR 108 (162)
Q Consensus 64 v~~ii~ry~~~~~~~~~~~~~~~lq~el~klk~~~~~l~~~~~~~ 108 (162)
....+.||...- .+...+..+.+.|+++|.+|+.-+.++
T Consensus 21 L~~~l~rY~~vL------~~R~~l~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 21 LENFLKRYNKVL------LDRAALIQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556677776541 223456677788999999888765543
No 31
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=57.11 E-value=88 Score=24.11 Aligned_cols=46 Identities=11% Similarity=0.281 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhhcCC---CCCC--CHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeEEEecc
Q 031283 96 QVNRILKKQIRQRMGES---LNDL--TLEELTGLEQDILDGLKIIHECKVIKPYTLCASSSTTVIVNVS 159 (162)
Q Consensus 96 ~~~~~l~~~~~~~~g~~---L~~L--s~eeL~~Le~~Le~~L~~ir~RK~~l~~~~~~~s~~~~~~~~~ 159 (162)
.-+..|+.+++...+.. +||+ +.+++..+|..+.. -+++++.||.+
T Consensus 72 i~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~------------------~~~fvl~fdc~ 122 (195)
T KOG3079|consen 72 ITLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQG------------------DPDFVLFFDCP 122 (195)
T ss_pred HHHHHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcC------------------CCCEEEEEeCC
Confidence 34455666666555433 5777 78889888887764 56777777765
No 32
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=55.33 E-value=76 Score=22.84 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHhhhcC---------CCCCCCHHHHHHHHHHHHHHHHHHH
Q 031283 91 LGAVEQVNRILKKQIRQRMGE---------SLNDLTLEELTGLEQDILDGLKIIH 136 (162)
Q Consensus 91 l~klk~~~~~l~~~~~~~~g~---------~L~~Ls~eeL~~Le~~Le~~L~~ir 136 (162)
.+.|++++..++..+...-|. .++.||.+.|..+..+|+.-...+.
T Consensus 17 N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~Le 71 (129)
T PF15372_consen 17 NDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSLE 71 (129)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444442 2488899999999988887554443
No 33
>PRK03100 sec-independent translocase; Provisional
Probab=54.71 E-value=7.3 Score=28.31 Aligned_cols=29 Identities=14% Similarity=0.081 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCcccccCCccchHHHHHHHhhh
Q 031283 42 KVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (162)
Q Consensus 42 ~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~ 74 (162)
=||+|||+| .+++.... .+...+..++..
T Consensus 15 vVaLvv~GP-krLP~~~r---~lG~~vr~~R~~ 43 (136)
T PRK03100 15 VAGLVILGP-ERLPGAIR---WTARALRQARDY 43 (136)
T ss_pred HHHHhhcCc-hHHHHHHH---HHHHHHHHHHHH
Confidence 378999999 57776654 355666666654
No 34
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=54.23 E-value=9.2 Score=25.09 Aligned_cols=30 Identities=7% Similarity=0.139 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcccccCCccchHHHHHHHhhhhc
Q 031283 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (162)
Q Consensus 43 va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~ 76 (162)
||+|||+| .+++...- .+...+.++++...
T Consensus 14 vallv~GP-~kLP~~~r---~~G~~i~~~r~~~~ 43 (80)
T TIGR01410 14 VALVVLGP-ERLPVAIR---AVGKFVRRLRGMAS 43 (80)
T ss_pred HHHheECc-hHHHHHHH---HHHHHHHHHHHhhH
Confidence 68999999 57766554 35566666666543
No 35
>PRK01770 sec-independent translocase; Provisional
Probab=53.93 E-value=14 Score=27.82 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=23.8
Q ss_pred HhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhhc
Q 031283 34 ELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (162)
Q Consensus 34 ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~ 76 (162)
||-+.+- ||+||||| .+++...- .+...+.++++...
T Consensus 8 ELllI~v--VaLlV~GP-erLP~~~r---~lg~~i~~~R~~~~ 44 (171)
T PRK01770 8 ELLLVFV--IGLVVLGP-QRLPVAVK---TVAGWIRALRSLAT 44 (171)
T ss_pred HHHHHHH--HHHHhcCc-hHHHHHHH---HHHHHHHHHHHHHH
Confidence 4444433 78999999 57776654 35667777776543
No 36
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=52.84 E-value=1e+02 Score=23.49 Aligned_cols=61 Identities=13% Similarity=0.065 Sum_probs=43.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 031283 83 HYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIKPYT 145 (162)
Q Consensus 83 ~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l~~~ 145 (162)
.++.+|+++.+|+++....++.+..+- ......+.+|-.+....-+...+.-|.|+. ++.+
T Consensus 117 t~eemQe~i~~L~kev~~~~erl~~~k-~g~~~vtpedk~~v~~~y~~~~~~wrk~kr-mf~e 177 (201)
T KOG4603|consen 117 TTEEMQEEIQELKKEVAGYRERLKNIK-AGTNHVTPEDKEQVYREYQKYCKEWRKRKR-MFRE 177 (201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 345677777777777666555554443 346778999999999999999999998886 4444
No 37
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=52.78 E-value=1.5 Score=26.56 Aligned_cols=30 Identities=17% Similarity=0.332 Sum_probs=20.5
Q ss_pred EEEEEecCCCCcccccCCccchHHHHHHHhhhhc
Q 031283 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (162)
Q Consensus 43 va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~ 76 (162)
|++++|+| +|++.++. ++.+.+..|++...
T Consensus 12 valllfGp-~kLP~~~r---~lG~~ir~fk~~~~ 41 (53)
T PF02416_consen 12 VALLLFGP-KKLPELAR---SLGKAIREFKKAIN 41 (53)
T ss_dssp HHHHHS-T-TTHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHhCc-hHHHHHHH---HHHHHHHHHHHHHH
Confidence 67889999 68887765 35667777776543
No 38
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=52.45 E-value=13 Score=27.06 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=26.0
Q ss_pred ccccEEEEEecCCCCcccccCCccchHHHHHHHhhh
Q 031283 39 CDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (162)
Q Consensus 39 C~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~ 74 (162)
|+...++-|..++|++..|..| +.+.+|+..|=.+
T Consensus 12 ~~~~~~vkvv~~~G~v~~~~~p-v~a~evm~~~P~h 46 (181)
T PF14009_consen 12 SSSAATVKVVHPDGKVEEFKRP-VTAAEVMLENPGH 46 (181)
T ss_pred cCCCceEEEEcCCCcEEEeCCC-cCHHHHHHHCCCC
Confidence 4445555555589999999998 4799999998544
No 39
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=51.63 E-value=12 Score=26.11 Aligned_cols=27 Identities=26% Similarity=0.135 Sum_probs=21.6
Q ss_pred hHHhhhhccccEEEEEecCCCCcccccC
Q 031283 32 ARELTILCDAKVSILICSSTAKAHEYIS 59 (162)
Q Consensus 32 A~ELs~LC~v~va~ivfsp~gk~~~~~~ 59 (162)
-.+|-.|-|| +|...|||+|++.+|-.
T Consensus 3 l~~Lm~lpGv-~AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 3 LDKLMKLPGV-VAAGEFSDDGKLVEYKG 29 (108)
T ss_pred HHHhhcCCCe-EEEEEECCCCeEEeeec
Confidence 4678888887 45667999999998876
No 40
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=51.58 E-value=1e+02 Score=23.30 Aligned_cols=68 Identities=19% Similarity=0.140 Sum_probs=46.5
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 031283 80 WSSHYEKMLENLGAVEQVNRILKKQIRQRMG----ESLNDLTLEELTGLEQDILDGLKIIHECKVIKPYTLCA 148 (162)
Q Consensus 80 ~~~~~~~lq~el~klk~~~~~l~~~~~~~~g----~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l~~~~~~ 148 (162)
.....+|+.-++.....++..|+.++..+.. .+-.++ -+++.+|+..|++..+.-..|.++|.++-|-
T Consensus 96 I~sf~~Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~k~~~-n~~i~slk~EL~d~iKe~e~~emeLyyecMk 167 (181)
T PF04645_consen 96 IDSFNQYKNLELKSIKKEIEILRLKISSLQKEINKNKKKDL-NEEIESLKSELNDLIKEREIREMELYYECMK 167 (181)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777776666644432 112222 2468999999999999999999999877653
No 41
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=51.16 E-value=69 Score=27.76 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=14.8
Q ss_pred CcccccCCcc--------chHHHHHHHhhhhc
Q 031283 53 KAHEYISPST--------TTKQLLDLYQKTLR 76 (162)
Q Consensus 53 k~~~~~~p~~--------~v~~ii~ry~~~~~ 76 (162)
-.++||||+. ..-..+.+|+-...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (431)
T PLN03230 38 LEHEYPWPEKLPQGELTTGALKILNRFKPLKN 69 (431)
T ss_pred CCCCCCCcccCCCCcccccHHHHHHhcCCCCC
Confidence 3488888864 22347777775543
No 42
>PF09781 NDUF_B5: NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit; InterPro: IPR019173 Members of this family mediate the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone, the reaction that occurs being: NADH + ubiquinone = NAD(+) + ubiquinol [, ].
Probab=50.83 E-value=52 Score=25.20 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=41.5
Q ss_pred hhccccEEEEEe------cC-------CCC-cccccCCccchHHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHHH
Q 031283 37 ILCDAKVSILIC------SS-------TAK-AHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILK 102 (162)
Q Consensus 37 ~LC~v~va~ivf------sp-------~gk-~~~~~~p~~~v~~ii~ry~~~~~~~~~~~~~~~lq~el~klk~~~~~l~ 102 (162)
.|.++.|+++|+ +| .|= |..|-.-..-+.+-|.||.-.++.+..+.....++.|-++ .+...++
T Consensus 74 lLg~IPv~~~it~vNvFiGpAeLaeIPEgY~P~hWEY~kHPItR~iAry~~~spq~~YEk~la~l~~e~ek--~~lr~~e 151 (187)
T PF09781_consen 74 LLGGIPVAIIITYVNVFIGPAELAEIPEGYEPEHWEYYKHPITRWIARYFYPSPQKNYEKMLAYLQIENEK--AELRLLE 151 (187)
T ss_pred HHHHHHHHHHHHHhheeeeeeeeccCCCCCCCcceeeccCcHHHHHHHHccCCHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 466777776654 33 332 2223222224778999998888766666655555554443 3344445
Q ss_pred HHHHhhhcC
Q 031283 103 KQIRQRMGE 111 (162)
Q Consensus 103 ~~~~~~~g~ 111 (162)
.+.+++|++
T Consensus 152 ~~Vr~lm~e 160 (187)
T PF09781_consen 152 KEVRRLMRE 160 (187)
T ss_pred HHHHHHHhc
Confidence 566666654
No 43
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=50.18 E-value=7.1 Score=27.25 Aligned_cols=30 Identities=10% Similarity=0.234 Sum_probs=21.8
Q ss_pred EEEEEecCCCCcccccCCccchHHHHHHHhhhhc
Q 031283 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (162)
Q Consensus 43 va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~ 76 (162)
|++|||+| +|++.... .+...+.+|++...
T Consensus 15 VallvfGP-kKLPelar---~lGk~i~~fk~~~~ 44 (108)
T PRK14858 15 IALIVIGP-QKLPDLAR---SLGRGLAEFKKATD 44 (108)
T ss_pred HHHHhcCc-hHHHHHHH---HHHHHHHHHHHHHH
Confidence 68899999 68877654 36677777777644
No 44
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=49.80 E-value=17 Score=27.46 Aligned_cols=61 Identities=23% Similarity=0.203 Sum_probs=31.3
Q ss_pred ccccEEEEEecC--------CCCcccccCCccchHHHHHHHhhhhccc----chhhhhhhhhhhhhHHHHHHHHHHH
Q 031283 39 CDAKVSILICSS--------TAKAHEYISPSTTTKQLLDLYQKTLRVD----LWSSHYEKMLENLGAVEQVNRILKK 103 (162)
Q Consensus 39 C~v~va~ivfsp--------~gk~~~~~~p~~~v~~ii~ry~~~~~~~----~~~~~~~~lq~el~klk~~~~~l~~ 103 (162)
.++..|.|||-| +|+=|.|..|. . +-++....|-.+ ......+.|..++++++++.+..+.
T Consensus 11 ~~~k~C~IC~KpsttVL~t~~~~DfFY~C~~-H---L~D~~F~~p~~~~~~~~~~~k~~el~~eiekvkke~Eekq~ 83 (182)
T PF08432_consen 11 TDAKACFICYKPSTTVLITPDNKDFFYVCPS-H---LKDRQFATPIYDEEYVEAKKKKKELEEEIEKVKKEYEEKQK 83 (182)
T ss_pred CCCCceeEecCCCceEEecCCCCCeEEeCcc-c---ccCcccCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHhH
Confidence 466777777765 56656565554 2 223322222111 1123445677777777666655443
No 45
>PRK13824 replication initiation protein RepC; Provisional
Probab=49.32 E-value=54 Score=28.11 Aligned_cols=94 Identities=13% Similarity=0.109 Sum_probs=46.1
Q ss_pred ccEEEEEe--cCCCCcccccCCc--c------chHHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc
Q 031283 41 AKVSILIC--SSTAKAHEYISPS--T------TTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMG 110 (162)
Q Consensus 41 v~va~ivf--sp~gk~~~~~~p~--~------~v~~ii~ry~~~~~~~~~~~~~~~lq~el~klk~~~~~l~~~~~~~~g 110 (162)
|++++|+. |||||-|..-.+. + +..-++.||...... -.+...-+.++..++.....+.+.++.+..
T Consensus 108 veaGLI~rrDSpNGKRyarr~~~G~i~~AfGfDLsPL~~R~~El~~~---A~~~~ae~~~~r~lr~~it~~rRdi~~li~ 184 (404)
T PRK13824 108 VEAGLIIRRDSPNGKRYARKGRGGEIEEAFGFDLAPLLARAEEFEAL---AEQVAAERKALRRLRERLTLCRRDIAKLIE 184 (404)
T ss_pred HHCCCeEeecCCCCcccceeCCCCceeeeeccchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556766 7999998654332 1 344566666544221 111122233344444444444443332220
Q ss_pred ----CC-------------------CCCCCHHHHHHHHHHHHHHHHHHHH
Q 031283 111 ----ES-------------------LNDLTLEELTGLEQDILDGLKIIHE 137 (162)
Q Consensus 111 ----~~-------------------L~~Ls~eeL~~Le~~Le~~L~~ir~ 137 (162)
+. --..+..+|..+...|...+..+..
T Consensus 185 ~a~~~~~~~~w~~~~~~~~~i~~~l~R~~~~~~l~~l~~~l~~l~~~~~~ 234 (404)
T PRK13824 185 AAIEEGVPGDWEGVEQRFRAIVARLPRRATLAELEPILDELEALREEVVN 234 (404)
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 00 1224566777777777766655543
No 46
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=48.40 E-value=60 Score=21.46 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=13.2
Q ss_pred CCCCHHHHHHHHHHHHH
Q 031283 114 NDLTLEELTGLEQDILD 130 (162)
Q Consensus 114 ~~Ls~eeL~~Le~~Le~ 130 (162)
-.||+++|..|......
T Consensus 46 ~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 46 MKMTPEELAAFLRAMKS 62 (83)
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 56899999998776644
No 47
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=45.89 E-value=16 Score=26.50 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=21.8
Q ss_pred HhhhhccccEEEEEecCCCCcccccC
Q 031283 34 ELTILCDAKVSILICSSTAKAHEYIS 59 (162)
Q Consensus 34 ELs~LC~v~va~ivfsp~gk~~~~~~ 59 (162)
=+.++||++|-++|-+.+.+-..||+
T Consensus 58 L~tt~~dadvi~~v~~and~~s~f~p 83 (148)
T COG4917 58 LITTLQDADVIIYVHAANDPESRFPP 83 (148)
T ss_pred HHHHhhccceeeeeecccCccccCCc
Confidence 35789999999999999888777765
No 48
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.63 E-value=44 Score=19.37 Aligned_cols=26 Identities=12% Similarity=0.408 Sum_probs=14.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHH
Q 031283 81 SSHYEKMLENLGAVEQVNRILKKQIR 106 (162)
Q Consensus 81 ~~~~~~lq~el~klk~~~~~l~~~~~ 106 (162)
..+++.+..+.+.|.++++.|+.++.
T Consensus 11 K~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 11 KASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666655443
No 49
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.39 E-value=11 Score=29.50 Aligned_cols=16 Identities=6% Similarity=0.113 Sum_probs=13.4
Q ss_pred ccEEEEEecCCCCccc
Q 031283 41 AKVSILICSSTAKAHE 56 (162)
Q Consensus 41 v~va~ivfsp~gk~~~ 56 (162)
-|-|+-||||+|.++.
T Consensus 4 ydraltvFSPDGhL~Q 19 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQ 19 (249)
T ss_pred cccceEEECCCCCEEe
Confidence 4678899999999885
No 50
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.97 E-value=1.9e+02 Score=25.52 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=12.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHH
Q 031283 81 SSHYEKMLENLGAVEQVNRILKK 103 (162)
Q Consensus 81 ~~~~~~lq~el~klk~~~~~l~~ 103 (162)
...++.+..+.+.|+++|+.|++
T Consensus 72 r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 72 RKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666554
No 51
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=44.48 E-value=22 Score=24.59 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=15.8
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 031283 112 SLNDLTLEELTGLEQDIL 129 (162)
Q Consensus 112 ~L~~Ls~eeL~~Le~~Le 129 (162)
.++.||.+|+..|..+++
T Consensus 86 Rle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 86 RLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHhCCHHHHHHHHHHhc
Confidence 578899999999998876
No 52
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=44.07 E-value=66 Score=21.80 Aligned_cols=77 Identities=10% Similarity=0.140 Sum_probs=40.2
Q ss_pred hHHhhhhccccEEEEE-------ecCCCC-cccccCCccchHHHHHHHhhhhc---cc-chhhhhhhhhhhhhHHHHHHH
Q 031283 32 ARELTILCDAKVSILI-------CSSTAK-AHEYISPSTTTKQLLDLYQKTLR---VD-LWSSHYEKMLENLGAVEQVNR 99 (162)
Q Consensus 32 A~ELs~LC~v~va~iv-------fsp~gk-~~~~~~p~~~v~~ii~ry~~~~~---~~-~~~~~~~~lq~el~klk~~~~ 99 (162)
..|||-.||++...|. +.|.+. +-.|..++. .-..+.+..+... .+ ..-.-+-.|-++++.++.++.
T Consensus 10 ~~Elc~~~gi~~~~l~eLve~GlIep~~~~~~~~~F~~~-~l~r~~~a~rL~~dl~in~~gialvl~LLd~i~~Lr~el~ 88 (101)
T PRK10265 10 ITEFCLHTGVSEEELNEIVGLGVIEPREIQETTWVFDDH-AAIVVQRAVRLRHELALDWPGIAVALTLLDEIAHLKQENR 88 (101)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCeecCCCCcccceECHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999998765542 234322 233433332 2244444443322 11 001122346677778888888
Q ss_pred HHHHHHHhhh
Q 031283 100 ILKKQIRQRM 109 (162)
Q Consensus 100 ~l~~~~~~~~ 109 (162)
.+++.++.+.
T Consensus 89 ~L~~~l~~~~ 98 (101)
T PRK10265 89 LLRQRLSRFV 98 (101)
T ss_pred HHHHHHHHHh
Confidence 8777666554
No 53
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=42.92 E-value=1.2e+02 Score=23.58 Aligned_cols=79 Identities=10% Similarity=0.152 Sum_probs=42.4
Q ss_pred chHHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCC------CHHHHHHHHHHHHHHHHHHH
Q 031283 63 TTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDL------TLEELTGLEQDILDGLKIIH 136 (162)
Q Consensus 63 ~v~~ii~ry~~~~~~~~~~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~L------s~eeL~~Le~~Le~~L~~ir 136 (162)
.+..+++.|....-++-.-........+|.++.+..+.-++++..-+..+++.+ -...+.+....|+..++.+.
T Consensus 23 ~v~~~~~~Y~~~vvTee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~E 102 (215)
T PF07083_consen 23 EVDEAVEKYKGYVVTEENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFE 102 (215)
T ss_pred HHHHHHHHhCCcccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888766443322222334556666777776666666654444433332 12334555556666666655
Q ss_pred HHHHh
Q 031283 137 ECKVI 141 (162)
Q Consensus 137 ~RK~~ 141 (162)
++..+
T Consensus 103 e~~k~ 107 (215)
T PF07083_consen 103 EKEKE 107 (215)
T ss_pred HHHHH
Confidence 54433
No 54
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=42.73 E-value=3.7 Score=24.20 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=23.5
Q ss_pred HhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhh
Q 031283 34 ELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTL 75 (162)
Q Consensus 34 ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~ 75 (162)
||-+..= |++++|+| +|++..+. ++.+.+..|++..
T Consensus 6 ElliI~v--i~llvfGp-~kLP~~~r---~lG~~i~~fk~~~ 41 (47)
T TIGR01411 6 EWLIILV--VILLLFGA-KKLPELGR---DLGKAIKEFKKAL 41 (47)
T ss_pred HHHHHHH--HHHHhcCc-hHhHHHHH---HHHHHHHHHHHHh
Confidence 4444433 68899999 67877664 3566677776653
No 55
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=42.37 E-value=3.9 Score=24.61 Aligned_cols=30 Identities=10% Similarity=0.274 Sum_probs=22.0
Q ss_pred EEEEEecCCCCcccccCCccchHHHHHHHhhhhc
Q 031283 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (162)
Q Consensus 43 va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~ 76 (162)
|++++|+| +|++..+. ++.+-+..|++...
T Consensus 14 i~llvFGp-~KLP~l~r---~lG~~i~~Fk~~~~ 43 (51)
T PRK01470 14 IIFVLFGA-GKLPQVMS---DLAKGLKAFKDGMK 43 (51)
T ss_pred HHHHhcCc-hHhHHHHH---HHHHHHHHHHHHhc
Confidence 78899999 68887765 36677777776543
No 56
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=42.04 E-value=1e+02 Score=23.31 Aligned_cols=64 Identities=11% Similarity=0.147 Sum_probs=33.7
Q ss_pred ccEEEEEe--cCCCCcccccCCcc--------chHHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHHHHHHHh
Q 031283 41 AKVSILIC--SSTAKAHEYISPST--------TTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQ 107 (162)
Q Consensus 41 v~va~ivf--sp~gk~~~~~~p~~--------~v~~ii~ry~~~~~~~~~~~~~~~lq~el~klk~~~~~l~~~~~~ 107 (162)
|++++|+. |||||-|..-++.- +..-++.||...... -.....-+..+..++.+...+...++.
T Consensus 96 veaGLI~rrDS~NgkRy~~R~~~G~I~~A~GfdLsPL~~R~~El~~~---a~~~~~~~~~~r~lr~~it~~rR~i~~ 169 (177)
T PF03428_consen 96 VEAGLIVRRDSPNGKRYARRDRGGRIVEAFGFDLSPLIARAEELAAL---AEAARAERRALRRLRRRITLLRRDIRK 169 (177)
T ss_pred HHCCCeeeccCCCCCccCccCCCCCEEeEeCcCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788887 69999887554431 344566666554221 112222333444455555554444433
No 57
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=41.90 E-value=23 Score=24.26 Aligned_cols=30 Identities=23% Similarity=0.124 Sum_probs=22.8
Q ss_pred hhHHhhhhccccEEEEEecCCCCcccccCCc
Q 031283 31 KARELTILCDAKVSILICSSTAKAHEYISPS 61 (162)
Q Consensus 31 KA~ELs~LC~v~va~ivfsp~gk~~~~~~p~ 61 (162)
|-.||--+-|| +|.=.|||+||+..|-+|=
T Consensus 4 kLdeLlqi~Gv-~AAGefs~DGkLv~Ykgdm 33 (109)
T COG4831 4 KLDELLQIKGV-MAAGEFSPDGKLVEYKGDM 33 (109)
T ss_pred hHHHHhCccce-eEeceeCCCCceEEeeCCC
Confidence 56677777776 4456799999999998863
No 58
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=41.23 E-value=51 Score=20.60 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=18.8
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 031283 81 SSHYEKMLENLGAVEQVNRILKKQIRQR 108 (162)
Q Consensus 81 ~~~~~~lq~el~klk~~~~~l~~~~~~~ 108 (162)
...+..++.+++.++.+++.++.++..+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667777777777777777666544
No 59
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=41.00 E-value=21 Score=19.15 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=17.2
Q ss_pred hhhhccccEEEEEecCCCCccccc
Q 031283 35 LTILCDAKVSILICSSTAKAHEYI 58 (162)
Q Consensus 35 Ls~LC~v~va~ivfsp~gk~~~~~ 58 (162)
|+--|||-|-+-||...|....|-
T Consensus 3 lcpkcgvgvl~pvy~~kgeikvfr 26 (36)
T PF09151_consen 3 LCPKCGVGVLEPVYNQKGEIKVFR 26 (36)
T ss_dssp B-TTTSSSBEEEEE-TTS-EEEEE
T ss_pred cCCccCceEEEEeecCCCcEEEEE
Confidence 566799999999999999765553
No 60
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=40.80 E-value=1e+02 Score=20.05 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=41.3
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031283 81 SSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIK 142 (162)
Q Consensus 81 ~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l 142 (162)
..-+..+++|+..++.+-..++.....+. ..++...=..|+..|+..+..+..+-+++
T Consensus 16 s~vl~~LqDE~~hm~~e~~~L~~~~~~~d----~s~~~~~R~~L~~~l~~lv~~mE~K~dQI 73 (79)
T PF06657_consen 16 SEVLKALQDEFGHMKMEHQELQDEYKQMD----PSLGRRKRRDLEQELEELVKRMEAKADQI 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445678888888877777765544333 24577777888889999998888887775
No 61
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=39.45 E-value=4.8 Score=25.38 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=26.0
Q ss_pred HhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhhc
Q 031283 34 ELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (162)
Q Consensus 34 ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~ 76 (162)
||-+++- ||+|+|+| ++++..+. .+.+.+..|++...
T Consensus 8 ElliI~v--IalllfGp-~kLP~l~r---~lGk~ir~fkk~~~ 44 (64)
T PRK14860 8 ELIVILV--IALVVFGP-AKLPQLGQ---ALGGAIRNFKKASN 44 (64)
T ss_pred HHHHHHH--HHHhhcCc-hHHHHHHH---HHHHHHHHHHHHcc
Confidence 5555544 78999999 58887664 36677778876644
No 62
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=39.33 E-value=1.3e+02 Score=20.84 Aligned_cols=30 Identities=17% Similarity=0.018 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031283 113 LNDLTLEELTGLEQDILDGLKIIHECKVIK 142 (162)
Q Consensus 113 L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l 142 (162)
-.+.+-+++.++...++..|+.+|.|-...
T Consensus 31 sg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~ 60 (104)
T COG4575 31 SGSLAGDEAEELRSKAESALKEARDRLGDT 60 (104)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788999999999999999999987553
No 63
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=38.46 E-value=27 Score=25.09 Aligned_cols=19 Identities=16% Similarity=0.464 Sum_probs=14.0
Q ss_pred cccCCccchHHHHHHHhhhh
Q 031283 56 EYISPSTTTKQLLDLYQKTL 75 (162)
Q Consensus 56 ~~~~p~~~v~~ii~ry~~~~ 75 (162)
.|++|. ++..|++.|...+
T Consensus 33 ~~~pP~-el~~iLe~y~~~~ 51 (132)
T PF09432_consen 33 DWNPPK-ELQSILEKYNTPS 51 (132)
T ss_pred CCCCCH-HHHHHHHHHcCCC
Confidence 366665 7889999998743
No 64
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=37.74 E-value=24 Score=22.02 Aligned_cols=30 Identities=7% Similarity=0.283 Sum_probs=19.7
Q ss_pred ccccEEEEEecCCCCcccccCCccchHHHHHH
Q 031283 39 CDAKVSILICSSTAKAHEYISPSTTTKQLLDL 70 (162)
Q Consensus 39 C~v~va~ivfsp~gk~~~~~~p~~~v~~ii~r 70 (162)
|+..-.++|+ |.|..|...+|. .+.+|++.
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~-~~~~il~~ 76 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPE-DVEEIVEE 76 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHH-HHHHHHHh
Confidence 5544445554 678888877775 67777765
No 65
>KOG4632 consensus NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit [Energy production and conversion]
Probab=37.39 E-value=1.1e+02 Score=23.00 Aligned_cols=53 Identities=11% Similarity=0.171 Sum_probs=36.9
Q ss_pred ccCCccchHHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHHHHHHHhhhcC
Q 031283 57 YISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGE 111 (162)
Q Consensus 57 ~~~p~~~v~~ii~ry~~~~~~~~~~~~~~~lq~el~klk~~~~~l~~~~~~~~g~ 111 (162)
|-.-...+.+-|.||--.++.+..+.+..+++.|-++ .+...++.+.+++||+
T Consensus 101 WeyekhPIsrwiar~f~~Sd~~~yEr~layl~~e~ek--A~~R~~E~eVr~lm~e 153 (187)
T KOG4632|consen 101 WEYEKHPISRWIARWFGVSDVEHYERNLAYLEKEGEK--ARWRQIEQEVRHLMGE 153 (187)
T ss_pred ceeecCcHHHHHHHHhcCChHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHcc
Confidence 4333335788999999988888888888888776654 3444555667777764
No 66
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=37.36 E-value=57 Score=26.72 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=30.5
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCC
Q 031283 81 SSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDL 116 (162)
Q Consensus 81 ~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~L 116 (162)
...+..|++++.+|+.++..+.+++..+||.+-++-
T Consensus 151 K~~I~~L~~qisaLdkqi~ai~Kkid~yWgkda~gk 186 (308)
T PF06717_consen 151 KNKIPGLNKQISALDKQIVAINKKIDRYWGKDANGK 186 (308)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 456778999999999999999999999999776554
No 67
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=36.95 E-value=1.5e+02 Score=24.30 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=28.9
Q ss_pred ceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhh
Q 031283 7 EMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQK 73 (162)
Q Consensus 7 ~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~ 73 (162)
.+-.|.|.+.|..+=++ .||..|.+ +.| .|-++ .++++|++.|..
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p-----~Y~nD-pEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNP-----HYHND-PELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCC-----CCCCc-HHHHHHHHHHhH
Confidence 45678888877766332 47776664 444 23333 269999999876
No 68
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=36.43 E-value=9.5 Score=25.69 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=23.3
Q ss_pred EEEEEecCCCCcccccCCccchHHHHHHHhhhhc
Q 031283 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (162)
Q Consensus 43 va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~ 76 (162)
|++|||+| .|++..+. ++...+..|++...
T Consensus 15 V~lllfGp-kKLP~l~r---~~G~~i~~fKk~~~ 44 (94)
T COG1826 15 VALLVFGP-KKLPEAGR---DLGKAIREFKKAAS 44 (94)
T ss_pred HHHHhcCc-chhHHHHH---HHHHHHHHHHHHHh
Confidence 68899998 68888765 36788888887654
No 69
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=36.15 E-value=1.3e+02 Score=25.06 Aligned_cols=76 Identities=11% Similarity=0.113 Sum_probs=34.9
Q ss_pred hhHhhHHhhhhc-----cccEEEEEecCCCCc-----ccccCCccchHHHHHHHhhhhcccchhhhhhhhhhhhhHHHHH
Q 031283 28 LFKKARELTILC-----DAKVSILICSSTAKA-----HEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQV 97 (162)
Q Consensus 28 L~KKA~ELs~LC-----~v~va~ivfsp~gk~-----~~~~~p~~~v~~ii~ry~~~~~~~~~~~~~~~lq~el~klk~~ 97 (162)
||.+.+|.-+=- +.-||++.|..+... |.|-+. .-+.||....... +...++++++++.+.+.+
T Consensus 100 lie~~~e~LT~nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~-----~ClaRyl~~~~~~-lrqe~q~~~~~~qh~~~~ 173 (368)
T KOG4445|consen 100 LIEHCSEFLTENNHPNGQCVICLYGFASSPAFTVTACDHYMHF-----ACLARYLTECLTG-LRQEIQDAQKERQHMKEQ 173 (368)
T ss_pred HHHHHHHHcccCCCCCCceEEEEEeecCCCceeeehhHHHHHH-----HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhh
Confidence 455555543322 234788888763311 122211 3456666543321 233445555555555555
Q ss_pred HHHHHHHHHhhh
Q 031283 98 NRILKKQIRQRM 109 (162)
Q Consensus 98 ~~~l~~~~~~~~ 109 (162)
.+-+-..++...
T Consensus 174 ~eavcpVcre~i 185 (368)
T KOG4445|consen 174 VEAVCPVCRERI 185 (368)
T ss_pred HhhhhhHhhhhc
Confidence 544433334333
No 70
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=35.92 E-value=3e+02 Score=24.01 Aligned_cols=60 Identities=18% Similarity=0.447 Sum_probs=36.1
Q ss_pred ceeEecCCCCcc-eecc---ccc-------cchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhh
Q 031283 7 EMKRIENATNRQ-VTFS---KRR-------NGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (162)
Q Consensus 7 ~ik~I~n~~~R~-~tf~---KR~-------~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~ 74 (162)
.|.-|.|.++|. +.|. ||. ++|+|+ ..|.+- ..+-+++|.|+|++..| + +.+||..|-..
T Consensus 257 ~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~-t~L~~s--~~~Nm~~~~~~g~p~~~-~----l~~iL~~f~~~ 327 (445)
T cd00187 257 GISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKV-TKLQTT--FGINMVAFDPNGRPKKL-N----LKEILQEFLDH 327 (445)
T ss_pred ccceeeeccCCCceEEEEEECCCccHHHHHHHHHHh-cCCcee--eeeeEEEEecCCeeEEe-C----HHHHHHHHHHH
Confidence 466777777773 3332 332 244433 222222 23367888899999888 3 56899988654
No 71
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=35.31 E-value=33 Score=23.11 Aligned_cols=37 Identities=14% Similarity=0.032 Sum_probs=28.4
Q ss_pred hccccEEEEEecCCC-CcccccCCccchHHHHHHHhhhh
Q 031283 38 LCDAKVSILICSSTA-KAHEYISPSTTTKQLLDLYQKTL 75 (162)
Q Consensus 38 LC~v~va~ivfsp~g-k~~~~~~p~~~v~~ii~ry~~~~ 75 (162)
+|..+--+.|+.|+| -.|....|+ .+.+|++.+...+
T Consensus 44 ~C~~ePlV~V~~p~g~v~Y~~V~~e-dv~~Iv~~~~~~~ 81 (92)
T cd03063 44 MYWLEPLVEVETPGGRVAYGPVTPA-DVASLLDAGALEG 81 (92)
T ss_pred ecCCCCEEEEEeCCCcEEEEeCCHH-HHHHHHHHHhhcC
Confidence 688888888887877 667777776 6889999876543
No 72
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=35.06 E-value=12 Score=26.74 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=30.0
Q ss_pred ecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccc
Q 031283 11 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEY 57 (162)
Q Consensus 11 I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~ 57 (162)
+.++.....||.=.-+.+-++.-+|+.+ |++.|+|.|+-+-.
T Consensus 41 v~~k~~ytktF~V~vaN~s~~~idLsk~-----Cf~a~~~~gk~f~l 82 (124)
T PF14263_consen 41 VGGKSFYTKTFDVTVANLSDKDIDLSKM-----CFKAYSPDGKEFKL 82 (124)
T ss_dssp ETTEEEEEEEEEEEEEE-SSS-EE-TT------EEEEEETTS-EEEE
T ss_pred ecCccceEEEEEEEEecCCCCccccccc-----hhhhccccCCEEEe
Confidence 4566777788888888888898899888 78999999987754
No 73
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=35.01 E-value=2.2e+02 Score=22.20 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=52.4
Q ss_pred hHHHHHHHhhhhc----ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhh------hcCCCCCCCHHHHHHHHHHHHHHHH
Q 031283 64 TKQLLDLYQKTLR----VDLWSSHYEKMLENLGAVEQVNRILKKQIRQR------MGESLNDLTLEELTGLEQDILDGLK 133 (162)
Q Consensus 64 v~~ii~ry~~~~~----~~~~~~~~~~lq~el~klk~~~~~l~~~~~~~------~g~~L~~Ls~eeL~~Le~~Le~~L~ 133 (162)
-..+++-|...-. .+........++..+...-.+...++.++..+ ..+.+.++|+++|.+........|.
T Consensus 16 ~~~~i~~l~~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~ 95 (240)
T PF12795_consen 16 QKALIQDLQQALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQ 95 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHH
Confidence 4578888876643 23344555566666666666666666666444 3356899999999998887777777
Q ss_pred HHHHHHHh
Q 031283 134 IIHECKVI 141 (162)
Q Consensus 134 ~ir~RK~~ 141 (162)
.....-..
T Consensus 96 ~~q~~l~~ 103 (240)
T PF12795_consen 96 ELQEQLQQ 103 (240)
T ss_pred HHHHHHHH
Confidence 76666544
No 74
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=34.48 E-value=71 Score=21.90 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=19.5
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 031283 81 SSHYEKMLENLGAVEQVNRILKKQIRQRM 109 (162)
Q Consensus 81 ~~~~~~lq~el~klk~~~~~l~~~~~~~~ 109 (162)
..+++.++.++++++.+|..|+.++..+.
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556677777777777777777665444
No 75
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=33.69 E-value=7.5 Score=24.24 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=23.6
Q ss_pred HhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhh
Q 031283 34 ELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTL 75 (162)
Q Consensus 34 ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~ 75 (162)
||.+.+- |++|||+| +|++.... .+...+..|++..
T Consensus 9 ElliI~v--i~llvfGp-~kLP~l~r---~~G~~~~~fk~~~ 44 (61)
T PRK14861 9 GLILILV--VALIIFGP-KKLPELGK---ALGKTLREFKKAT 44 (61)
T ss_pred HHHHHHH--HHHHhcCc-hHHHHHHH---HHHHHHHHHHHHH
Confidence 5555544 67899999 58877654 3556666666643
No 76
>PLN03128 DNA topoisomerase 2; Provisional
Probab=33.54 E-value=2.4e+02 Score=27.79 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=21.0
Q ss_pred EEEEecCCCCcccccCCccchHHHHHHHhhh
Q 031283 44 SILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (162)
Q Consensus 44 a~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~ 74 (162)
-+++|.+.|++..|.++ .+||..|-..
T Consensus 961 nm~l~d~~~~i~ky~~~----~~il~~f~~~ 987 (1135)
T PLN03128 961 NMHLFDKDGKIKKYDSP----EDILEEFFHL 987 (1135)
T ss_pred EEEEECCCCcccCCCCH----HHHHHHHHHH
Confidence 57789999999888664 5888888644
No 77
>PF14282 FlxA: FlxA-like protein
Probab=33.16 E-value=1.6e+02 Score=20.10 Aligned_cols=53 Identities=11% Similarity=0.113 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 031283 91 LGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIKPYT 145 (162)
Q Consensus 91 l~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l~~~ 145 (162)
+..|++++..|+.++..+... .+++.++-..-...|..-+..+.....++-.+
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~~--~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQD--SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHcc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555444444432 66788877777777777777777666665433
No 78
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=33.00 E-value=33 Score=27.40 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=28.7
Q ss_pred eccccccchhHhhHHhhhhcccc---EEEEEecCCCCcccccCC
Q 031283 20 TFSKRRNGLFKKARELTILCDAK---VSILICSSTAKAHEYISP 60 (162)
Q Consensus 20 tf~KR~~gL~KKA~ELs~LC~v~---va~ivfsp~gk~~~~~~p 60 (162)
-|.+-+.|++||.. +.+||+.+ +|-|.||+.+...-|++.
T Consensus 119 ~~~~~~~~~~~~~~-~~~L~~~~~~l~~~v~fS~~~r~IGFSkD 161 (269)
T PRK09822 119 FYRREKGGFLKKIK-FNILKRVHKALLISVPLSKRGRLAGFCKD 161 (269)
T ss_pred hhhhccCchhhhhH-HHHHhhhhhhhEEEeeccccCCceeeeec
Confidence 34445888888874 78888664 566679998887777663
No 79
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=32.02 E-value=24 Score=27.92 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=17.5
Q ss_pred hhhccccEEEEEecCCCCccc
Q 031283 36 TILCDAKVSILICSSTAKAHE 56 (162)
Q Consensus 36 s~LC~v~va~ivfsp~gk~~~ 56 (162)
||=.|-|.|.-+|||+|..|.
T Consensus 3 sIGtGyDls~s~fSpdGrvfQ 23 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQ 23 (254)
T ss_pred cccccccccceeeCCCCceeh
Confidence 455678999999999999885
No 80
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=31.71 E-value=1.8e+02 Score=27.17 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=14.0
Q ss_pred EEEEEecCCCCcccccCCcc
Q 031283 43 VSILICSSTAKAHEYISPST 62 (162)
Q Consensus 43 va~ivfsp~gk~~~~~~p~~ 62 (162)
+.|+.---.||-++||||..
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~ 69 (762)
T PLN03229 50 LAVVAKIRKGKKHEYPWPAD 69 (762)
T ss_pred eEEEeeeccccccCCCCCCC
Confidence 44444456788899999873
No 81
>smart00415 HSF heat shock factor.
Probab=31.64 E-value=36 Score=23.16 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=29.4
Q ss_pred hhccccEE-EEEecCCCCcccccCCccchHHHHHHHhhhhc
Q 031283 37 ILCDAKVS-ILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (162)
Q Consensus 37 ~LC~v~va-~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~ 76 (162)
+|.|.+.. +|-.+|+|+.+....|..-...|+.+|-.+..
T Consensus 12 ~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~ 52 (105)
T smart00415 12 LVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNN 52 (105)
T ss_pred HHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCC
Confidence 45566665 88999999998887776545678888866543
No 82
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=31.59 E-value=7.1 Score=24.85 Aligned_cols=30 Identities=10% Similarity=0.206 Sum_probs=21.8
Q ss_pred EEEEEecCCCCcccccCCccchHHHHHHHhhhhc
Q 031283 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (162)
Q Consensus 43 va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~ 76 (162)
||+++|+| +|++..+. ++.+.+.-|+....
T Consensus 15 I~lllFGp-kKLp~lg~---~lGk~i~~Fk~~~~ 44 (67)
T PRK03625 15 LVVLLFGT-KKLRTLGG---DLGAAIKGFKKAMN 44 (67)
T ss_pred HHHHHcCc-cHHHHHHH---HHHHHHHHHHHHhc
Confidence 68899999 58877665 36677777776543
No 83
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=31.08 E-value=52 Score=19.11 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=19.7
Q ss_pred EEEecCCCCcccccCCccchHHHHHHH
Q 031283 45 ILICSSTAKAHEYISPSTTTKQLLDLY 71 (162)
Q Consensus 45 ~ivfsp~gk~~~~~~p~~~v~~ii~ry 71 (162)
+.||-|+|..+.++.+. .+.+++...
T Consensus 1 ~~~~~~~g~~~~~~~~~-t~~~~~~~~ 26 (60)
T cd01668 1 IYVFTPKGEIIELPAGA-TVLDFAYAI 26 (60)
T ss_pred CEEECCCCCEEEcCCCC-CHHHHHHHH
Confidence 36899999999998775 567777643
No 84
>COG5211 SSU72 RNA polymerase II-interacting protein involved in transcription start site selection [Transcription]
Probab=30.82 E-value=1.6e+02 Score=22.11 Aligned_cols=45 Identities=9% Similarity=-0.028 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-ccceeeEEEecccC
Q 031283 117 TLEELTGLEQDILDGLKIIHECKVIKPYTLC-ASSSTTVIVNVSNL 161 (162)
Q Consensus 117 s~eeL~~Le~~Le~~L~~ir~RK~~l~~~~~-~~s~~~~~~~~~~~ 161 (162)
+.+++-+|.+.|.+...+...-...++-+-+ +-+.||+|+-|+|+
T Consensus 152 G~kaILelvd~L~~~~e~lE~~~~sil~~~qsnh~~lp~Lyt~~~~ 197 (197)
T COG5211 152 GAKAILELVDVLAKEEERLEYAVDSILRRYQSNHKGLPLLYTVVNL 197 (197)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeeccC
Confidence 5566677777777777777777777776655 48999999999885
No 85
>PRK00404 tatB sec-independent translocase; Provisional
Probab=30.64 E-value=43 Score=24.51 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=18.3
Q ss_pred cEEEEEecCCCCcccccCCccchHHHHHHHhh
Q 031283 42 KVSILICSSTAKAHEYISPSTTTKQLLDLYQK 73 (162)
Q Consensus 42 ~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~ 73 (162)
=||+|||+| .+++.... .+...+.++++
T Consensus 14 VVaLlV~GP-kkLP~laR---~lG~~i~~~rr 41 (141)
T PRK00404 14 LVALLVLGP-ERLPGAAR---TAGLWIGRLKR 41 (141)
T ss_pred HHHHHhcCc-hHHHHHHH---HHHHHHHHHHH
Confidence 378899999 56766543 24555666664
No 86
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=30.23 E-value=58 Score=24.76 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=21.4
Q ss_pred CCCCCCHHHHHHHHHHHHH--HHHHHHHHHHhhhhh
Q 031283 112 SLNDLTLEELTGLEQDILD--GLKIIHECKVIKPYT 145 (162)
Q Consensus 112 ~L~~Ls~eeL~~Le~~Le~--~L~~ir~RK~~l~~~ 145 (162)
.+++.+.+||..+++.-++ -|...|+++.+-|+.
T Consensus 39 ~~e~~~~~el~~~~d~~~d~~~Le~yR~kRl~el~~ 74 (192)
T cd02988 39 ALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKA 74 (192)
T ss_pred HhhhccHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 3566667777777655555 577777766555544
No 87
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=30.15 E-value=2.1e+02 Score=20.46 Aligned_cols=56 Identities=14% Similarity=0.101 Sum_probs=26.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031283 84 YEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECK 139 (162)
Q Consensus 84 ~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK 139 (162)
.+.++.++.+++.....++..+..+....=...=-++-.+|....++.+..+....
T Consensus 54 ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I 109 (126)
T PF09403_consen 54 AEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEI 109 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566555555444433332222111111112666666666666666665543
No 88
>smart00340 HALZ homeobox associated leucin zipper.
Probab=30.06 E-value=1.1e+02 Score=17.63 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=16.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhh
Q 031283 85 EKMLENLGAVEQVNRILKKQIRQRM 109 (162)
Q Consensus 85 ~~lq~el~klk~~~~~l~~~~~~~~ 109 (162)
+++..=.+.|.++|.+|++++..+.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777788888887765443
No 89
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=29.87 E-value=1.2e+02 Score=22.43 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=20.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031283 111 ESLNDLTLEELTGLEQDILDGLKIIHE 137 (162)
Q Consensus 111 ~~L~~Ls~eeL~~Le~~Le~~L~~ir~ 137 (162)
-+|..||+++|..+.+++|.-+.-+.+
T Consensus 8 idltkLsleQL~~lk~q~dqEl~~lq~ 34 (153)
T KOG3048|consen 8 IDLTKLSLEQLGALKKQFDQELNFLQD 34 (153)
T ss_pred CChhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999888775554433
No 90
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=29.80 E-value=1.1e+02 Score=18.30 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=18.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031283 113 LNDLTLEELTGLEQDILDGLKIIHECK 139 (162)
Q Consensus 113 L~~Ls~eeL~~Le~~Le~~L~~ir~RK 139 (162)
|-++|.+||.+....+...|-..|-++
T Consensus 2 lr~~s~~EL~~~l~~lr~eLf~Lr~~~ 28 (55)
T TIGR00012 2 LREKSKEELAKKLDELKKELFELRFQK 28 (55)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888877777777777766443
No 91
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=29.53 E-value=70 Score=25.21 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=26.7
Q ss_pred HhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhhc
Q 031283 34 ELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (162)
Q Consensus 34 ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~ 76 (162)
-|+..+-+.+-+-+|+|+| |.+.+.++.+.|..-++
T Consensus 12 ~La~s~~~~adinlYGpGG-------PhtaL~~vA~~~~ektg 47 (252)
T COG4588 12 LLAFSSAANADINLYGPGG-------PHTALKDVAKKYEEKTG 47 (252)
T ss_pred HHHhhhhhcceEEEecCCC-------CcHHHHHHHHHHHHHhC
Confidence 3444445666778899988 66778999999987654
No 92
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=29.22 E-value=2.9e+02 Score=21.82 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=26.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031283 110 GESLNDLTLEELTGLEQDILDGLKIIHECK 139 (162)
Q Consensus 110 g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK 139 (162)
+....+++..+|.......+.-|..+|.|-
T Consensus 114 ~~~~~~~~~~~l~~~l~ea~~mL~emr~r~ 143 (264)
T PF06008_consen 114 NENGDQLPSEDLQRALAEAQRMLEEMRKRD 143 (264)
T ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 446788999999999999999999999984
No 93
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.16 E-value=3.5e+02 Score=24.92 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=26.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031283 112 SLNDLTLEELTGLEQDILDGLKIIHECKVIKP 143 (162)
Q Consensus 112 ~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l~ 143 (162)
+..++|.+.|.+|-.+|...-+.-..|..+..
T Consensus 153 D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~ 184 (660)
T KOG4302|consen 153 DESDLSLEKLEELREHLNELQKEKSDRLEKVL 184 (660)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999988888888877654
No 94
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=29.10 E-value=21 Score=24.95 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=28.3
Q ss_pred Ccceecccccc---------chhHhhHHhhhhccccEEEEEecCCCCc
Q 031283 16 NRQVTFSKRRN---------GLFKKARELTILCDAKVSILICSSTAKA 54 (162)
Q Consensus 16 ~R~~tf~KR~~---------gL~KKA~ELs~LC~v~va~ivfsp~gk~ 54 (162)
.+...||+=|+ |=+-|+.|+.+=||.|+-+++..|.|.+
T Consensus 49 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg~ 96 (111)
T COG0139 49 GEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGGP 96 (111)
T ss_pred CeEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 34445555555 4455678999999999999999996643
No 95
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=28.90 E-value=1.7e+02 Score=20.23 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=12.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHH
Q 031283 82 SHYEKMLENLGAVEQVNRILKKQIR 106 (162)
Q Consensus 82 ~~~~~lq~el~klk~~~~~l~~~~~ 106 (162)
..+..+-+|-..|+.+|..|+..+.
T Consensus 29 ~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 29 KQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555554443
No 96
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=28.78 E-value=46 Score=28.40 Aligned_cols=41 Identities=27% Similarity=0.429 Sum_probs=27.3
Q ss_pred HHhhhhccccE--EEEEecCCCCcccccCCcc---chHHHHHHHhhhh
Q 031283 33 RELTILCDAKV--SILICSSTAKAHEYISPST---TTKQLLDLYQKTL 75 (162)
Q Consensus 33 ~ELs~LC~v~v--a~ivfsp~gk~~~~~~p~~---~v~~ii~ry~~~~ 75 (162)
.-|||+||-+| |+|--...| |-|..|.. ++++++..|.+.+
T Consensus 367 yalSV~~~~~V~HClIy~tatG--~GFa~pyn~y~tlk~lV~hY~h~S 412 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATG--FGFAEPYNLYSTLKELVLHYQHTS 412 (464)
T ss_pred eEEEEEECCceeeeEEeecccc--ccccchhHHHHHHHHHHHHHhhhh
Confidence 35899998766 555444444 55666653 5778888887764
No 97
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.61 E-value=3.2e+02 Score=22.16 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 031283 119 EELTGLEQDILDGLKIIHECKVIK 142 (162)
Q Consensus 119 eeL~~Le~~Le~~L~~ir~RK~~l 142 (162)
.++..++..|+..-..|++|..-+
T Consensus 80 ~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 80 AEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777554
No 98
>PF01955 CbiZ: Adenosylcobinamide amidohydrolase; InterPro: IPR002808 This prokaryotic protein includes CbiZ, which is involved in the salvage pathway of cobinamide in archaea. Archaea convert adenosylcobinamide (AdoCbi) into adenosylcobinamide phosphate (AdoCbi-P) in two steps. First, the amidohydrolase activity of CbiZ cleaves off the aminopropanol moiety of AdoCbi yielding adenosylcobyric acid (AdoCby); second, AdoCby is converted into AdoCbi-P by the action of adenosylcobinamide-phosphate synthase (CbiB, 6.3.1.10 from EC). Adenosylcobyric acid is an intermediate of the de novo coenzyme B12 biosynthetic route [].
Probab=28.60 E-value=62 Score=24.67 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=22.4
Q ss_pred hccccEEEEEecC-CCCcccccCCccchHHHHHH
Q 031283 38 LCDAKVSILICSS-TAKAHEYISPSTTTKQLLDL 70 (162)
Q Consensus 38 LC~v~va~ivfsp-~gk~~~~~~p~~~v~~ii~r 70 (162)
=++-| |++|+++ +|....|+.|.+.+.+.|.+
T Consensus 153 GT~TD-~i~Va~~~~~~~~~yaG~~T~lG~~i~~ 185 (191)
T PF01955_consen 153 GTGTD-AIVVASPQSGGRIPYAGPHTKLGELIGR 185 (191)
T ss_pred CCcCC-eEEEEECCCCCccccCchhcHHHHHHHH
Confidence 34455 5555555 48899999999877776655
No 99
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=27.85 E-value=80 Score=20.75 Aligned_cols=32 Identities=6% Similarity=0.226 Sum_probs=22.9
Q ss_pred cEEEEEecCCCC--cccccCCccchHHHHHHHhhh
Q 031283 42 KVSILICSSTAK--AHEYISPSTTTKQLLDLYQKT 74 (162)
Q Consensus 42 ~va~ivfsp~gk--~~~~~~p~~~v~~ii~ry~~~ 74 (162)
.+-|+|++.+|+ ++.+..++ ....++.+|.-.
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~-D~~~i~r~f~Tp 41 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDN-DPDKIARRFCTP 41 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCC-CHHHHHhhccCc
Confidence 467889998775 55555554 788899998644
No 100
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=27.64 E-value=3.9e+02 Score=26.98 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred EEEecCCCCcccccCCccchHHHHHHHhhhhc---ccchhhhhhhhhhhhhHHH----------------------HHHH
Q 031283 45 ILICSSTAKAHEYISPSTTTKQLLDLYQKTLR---VDLWSSHYEKMLENLGAVE----------------------QVNR 99 (162)
Q Consensus 45 ~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~---~~~~~~~~~~lq~el~klk----------------------~~~~ 99 (162)
+++|.++|+.+.|.++. +||..|...-- ..+.+..+..++.++..+. .-..
T Consensus 963 m~~~d~~g~i~~~~~~~----~Il~~f~~~Rl~~y~kR~~~~l~~l~~~~~~l~~~~rFI~~vi~~~i~i~~~~k~~l~~ 1038 (1388)
T PTZ00108 963 MVLFDENGKIKKYSDAL----DILKEFYLVRLDLYKKRKEYLLGKLERELARLSNKVRFIKHVINGELVITNAKKKDLVK 1038 (1388)
T ss_pred EEEEeCCCCcceeCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeEEccCCHHHHHH
Q ss_pred HHHHH--------------------------------------------HHhhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031283 100 ILKKQ--------------------------------------------IRQRMGESLNDLTLEELTGLEQDILDGLKII 135 (162)
Q Consensus 100 ~l~~~--------------------------------------------~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~i 135 (162)
.|... -..+++-+|-.|+.+....|..+++.....+
T Consensus 1039 ~L~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~e~v~kL~~e~~~~~~e~ 1118 (1388)
T PTZ00108 1039 ELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKEL 1118 (1388)
T ss_pred HHHHcCCCccchhhhhcccccccccccccccccccccccccccccchhhhHHHhcCCHHhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 031283 136 HE 137 (162)
Q Consensus 136 r~ 137 (162)
..
T Consensus 1119 ~~ 1120 (1388)
T PTZ00108 1119 EK 1120 (1388)
T ss_pred HH
No 101
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=27.63 E-value=56 Score=21.47 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=23.7
Q ss_pred hhHhhHHhhhhc----cccEEEEEecCCCCcccccC
Q 031283 28 LFKKARELTILC----DAKVSILICSSTAKAHEYIS 59 (162)
Q Consensus 28 L~KKA~ELs~LC----~v~va~ivfsp~gk~~~~~~ 59 (162)
+++.|.+++-.. +..|+.+|++|+|+....+.
T Consensus 7 ~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~i~~g~ 42 (102)
T PF00383_consen 7 FMRIAIELAKRSRPCGNFPVGAVIVDPDGKIIATGY 42 (102)
T ss_dssp HHHHHHHHHHTHBTTTSSSEEEEEEETTTEEEEEEE
T ss_pred HHHHHHHHHHhccccCCCCEEEEEEeccCccEEEEe
Confidence 567777777766 88999999998766554433
No 102
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=27.57 E-value=80 Score=25.47 Aligned_cols=28 Identities=14% Similarity=0.314 Sum_probs=24.4
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031283 109 MGESLNDLTLEELTGLEQDILDGLKIIH 136 (162)
Q Consensus 109 ~g~~L~~Ls~eeL~~Le~~Le~~L~~ir 136 (162)
|-+.=-||+++|++.+|.+....|..+|
T Consensus 230 W~DeW~gltmedIR~~E~~t~~~l~~~~ 257 (258)
T cd08888 230 WLDKWHGLTMDDIRRMEDETKKELDEMR 257 (258)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 3456789999999999999999999876
No 103
>PRK10132 hypothetical protein; Provisional
Probab=27.54 E-value=2.1e+02 Score=19.76 Aligned_cols=28 Identities=11% Similarity=-0.120 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031283 113 LNDLTLEELTGLEQDILDGLKIIHECKV 140 (162)
Q Consensus 113 L~~Ls~eeL~~Le~~Le~~L~~ir~RK~ 140 (162)
..+-+-+++.++-..++..|...+++-.
T Consensus 35 ~~~~~~~~~~~lR~r~~~~L~~ar~~l~ 62 (108)
T PRK10132 35 WGSDAKGEAEAARRKAQALLKETRARMH 62 (108)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677888888899888888886654
No 104
>PHA00327 minor capsid protein
Probab=27.34 E-value=1.6e+02 Score=22.17 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=26.1
Q ss_pred cCCCCcccccCCccchHHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHHH
Q 031283 49 SSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILK 102 (162)
Q Consensus 49 sp~gk~~~~~~p~~~v~~ii~ry~~~~~~~~~~~~~~~lq~el~klk~~~~~l~ 102 (162)
+|.|- +|+|.-.++.-|..-... ..+--+++.++.++.+|+.+++.++
T Consensus 88 sPsGA---g~Sp~Np~eSglnSa~~v---~~l~~~~~r~~aelQnL~~q~r~in 135 (187)
T PHA00327 88 SPSGA---GWSPNNPVESGLNSALAV---QRLTYERKRMQAELQNLREQNRLIN 135 (187)
T ss_pred CCCCC---CCCCCCcHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57773 344443455544432221 2222344566778888888877655
No 105
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=27.15 E-value=79 Score=19.11 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=20.0
Q ss_pred EEEecCCCCcccccCCccchHHHHHHHh
Q 031283 45 ILICSSTAKAHEYISPSTTTKQLLDLYQ 72 (162)
Q Consensus 45 ~ivfsp~gk~~~~~~p~~~v~~ii~ry~ 72 (162)
+.||-|+|....|+..++ +.++...-.
T Consensus 1 I~v~lpdG~~~~~~~g~T-~~d~A~~I~ 27 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGST-VLDVAYSIH 27 (60)
T ss_dssp EEEEETTSCEEEEETTBB-HHHHHHHHS
T ss_pred CEEECCCCCeeeCCCCCC-HHHHHHHHC
Confidence 457779999999998874 666666543
No 106
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=26.86 E-value=8.2 Score=25.69 Aligned_cols=36 Identities=11% Similarity=0.282 Sum_probs=25.7
Q ss_pred HhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhh
Q 031283 34 ELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTL 75 (162)
Q Consensus 34 ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~ 75 (162)
||-++.- |++++|+| +|++..+. .+...+..|++..
T Consensus 7 ElliI~v--I~lllFGp-~KLP~~~r---~lGk~ir~FK~~~ 42 (84)
T PRK00191 7 EIGIIVL--LIIVLFGA-KKLPDAAR---SIGRSMRIFKSEV 42 (84)
T ss_pred HHHHHHH--HHHHHhcc-hHHHHHHH---HHHHHHHHHHHHH
Confidence 5555543 58899999 58888765 3677888888653
No 107
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=26.71 E-value=41 Score=27.64 Aligned_cols=15 Identities=7% Similarity=0.284 Sum_probs=12.3
Q ss_pred chHHHHHHHhhhhcc
Q 031283 63 TTKQLLDLYQKTLRV 77 (162)
Q Consensus 63 ~v~~ii~ry~~~~~~ 77 (162)
+|++|.+.|.+.+..
T Consensus 36 eMK~Vme~F~rqTsQ 50 (299)
T PF02009_consen 36 EMKSVMENFDRQTSQ 50 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 599999999977653
No 108
>PRK11281 hypothetical protein; Provisional
Probab=26.66 E-value=6.2e+02 Score=24.95 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=19.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031283 111 ESLNDLTLEELTGLEQDILDGLKIIHECKV 140 (162)
Q Consensus 111 ~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~ 140 (162)
..+..+|..+|.+...+++..|....+.-.
T Consensus 116 ~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La 145 (1113)
T PRK11281 116 ETLSTLSLRQLESRLAQTLDQLQNAQNDLA 145 (1113)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888888887776666666555554443
No 109
>PF13252 DUF4043: Protein of unknown function (DUF4043)
Probab=26.63 E-value=34 Score=28.63 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=20.4
Q ss_pred hHHhhhhccccEEEEEecCCCCcccccCC
Q 031283 32 ARELTILCDAKVSILICSSTAKAHEYISP 60 (162)
Q Consensus 32 A~ELs~LC~v~va~ivfsp~gk~~~~~~p 60 (162)
+-.-+.|||+.++++.|+..+....|.|.
T Consensus 271 ~v~ralLlGaQA~~~A~G~~~~~~~~~w~ 299 (341)
T PF13252_consen 271 AVARALLLGAQALVIAFGKSGSGMRFFWV 299 (341)
T ss_pred ceeeeeeechhheeeeeeccCCCcccccc
Confidence 34457899999999999984444444443
No 110
>PF04417 DUF501: Protein of unknown function (DUF501); InterPro: IPR007511 This is a family of uncharacterised bacterial proteins.
Probab=26.55 E-value=2.5e+02 Score=20.27 Aligned_cols=38 Identities=8% Similarity=0.042 Sum_probs=24.3
Q ss_pred ccccEEEEEec--CCCCccc--ccCCccchHHHHHHHhhhhc
Q 031283 39 CDAKVSILICS--STAKAHE--YISPSTTTKQLLDLYQKTLR 76 (162)
Q Consensus 39 C~v~va~ivfs--p~gk~~~--~~~p~~~v~~ii~ry~~~~~ 76 (162)
||.+..+.++. ++|+||+ ||=.+..+...++|....-.
T Consensus 7 ~G~P~Vi~~~P~l~~g~PFPTlfwLtcP~L~~~isrLE~~G~ 48 (139)
T PF04417_consen 7 CGFPQVIRTAPRLVDGKPFPTLFWLTCPYLVKAISRLEAEGG 48 (139)
T ss_pred CCCCeEEEeccCCCCCccCCccHhhcCHHHHHHHHHHHhcCH
Confidence 57777777775 6888774 33333357778888765533
No 111
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=26.52 E-value=36 Score=17.57 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=16.7
Q ss_pred hhhccccEEEEEecCCCCcccccCCc
Q 031283 36 TILCDAKVSILICSSTAKAHEYISPS 61 (162)
Q Consensus 36 s~LC~v~va~ivfsp~gk~~~~~~p~ 61 (162)
+|-||..-.+++.+. |++|.|+..+
T Consensus 3 ~ia~G~~ht~al~~~-g~v~~wG~n~ 27 (30)
T PF13540_consen 3 QIACGGYHTCALTSD-GEVYCWGDNN 27 (30)
T ss_dssp EEEEESSEEEEEE-T-TEEEEEE--T
T ss_pred EEEecCCEEEEEEcC-CCEEEEcCCc
Confidence 356777777777765 8999998754
No 112
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=26.43 E-value=75 Score=24.02 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=31.1
Q ss_pred ccccchhHhhHHhhhhccccEEEEEecCC-----CCcccccCCccchHHHHHHHhhhhcc
Q 031283 23 KRRNGLFKKARELTILCDAKVSILICSST-----AKAHEYISPSTTTKQLLDLYQKTLRV 77 (162)
Q Consensus 23 KR~~gL~KKA~ELs~LC~v~va~ivfsp~-----gk~~~~~~p~~~v~~ii~ry~~~~~~ 77 (162)
=|..-++++..++...|..=...|.=.|. .+.+.|.=|+ +.+++++|......
T Consensus 94 i~~~~~~~~~~~~~~~~~~I~~~v~~~P~~l~~a~~Fl~~yLp~--~~~l~~kY~~l~~~ 151 (199)
T PF10112_consen 94 IRDLEMIEKVSRIEKIARRIFKYVEKDPERLTQARKFLYYYLPT--AVKLLEKYAELESQ 151 (199)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHCHHhHHHHHHHHHHHhhH--HHHHHHHHHHHHhc
Confidence 34445667777777777655555555552 1222333454 67888888876553
No 113
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=26.17 E-value=67 Score=25.66 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=25.2
Q ss_pred HHhhhhccccEEEEEecCCCCcccccCCcc
Q 031283 33 RELTILCDAKVSILICSSTAKAHEYISPST 62 (162)
Q Consensus 33 ~ELs~LC~v~va~ivfsp~gk~~~~~~p~~ 62 (162)
.+|.-.+|++|+|||+.+.|.++.-+.+.+
T Consensus 133 ~~l~~~~g~~v~VIItDt~gr~~R~G~~gv 162 (243)
T TIGR01916 133 RGLRELTGVDVGVIITDTNGRPFREGQVGV 162 (243)
T ss_pred HHHHHHHCCCEEEEEECCCCCccccCCCCe
Confidence 356678999999999999999998877654
No 114
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.96 E-value=5.4e+02 Score=25.04 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=36.7
Q ss_pred chhhhhhhhhhhhhHHHHHHHHHHHHHHhhh------cCCCCCCCHHHHHHHH---HHHHHHHHHHH
Q 031283 79 LWSSHYEKMLENLGAVEQVNRILKKQIRQRM------GESLNDLTLEELTGLE---QDILDGLKIIH 136 (162)
Q Consensus 79 ~~~~~~~~lq~el~klk~~~~~l~~~~~~~~------g~~L~~Ls~eeL~~Le---~~Le~~L~~ir 136 (162)
..+...+.||.+++.+++.++.|+.++..+. |.+..+.|.=|+.+|| ..|.++|-+.|
T Consensus 322 mAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLR 388 (1243)
T KOG0971|consen 322 MAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLR 388 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678899999999999998877653332 4455555555555555 34444444443
No 115
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=25.92 E-value=1.1e+02 Score=18.93 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=13.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 031283 113 LNDLTLEELTGLEQDILDGLKIIHE 137 (162)
Q Consensus 113 L~~Ls~eeL~~Le~~Le~~L~~ir~ 137 (162)
|-++|.+||......+...|-..|-
T Consensus 6 lr~ls~~eL~~~l~~lkkeL~~lR~ 30 (66)
T PRK00306 6 LRELSVEELNEKLLELKKELFNLRF 30 (66)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666555555555555543
No 116
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=25.91 E-value=40 Score=21.43 Aligned_cols=29 Identities=17% Similarity=0.437 Sum_probs=18.9
Q ss_pred ccccEEEEEecCCCCcccccCCccchHHHHHHH
Q 031283 39 CDAKVSILICSSTAKAHEYISPSTTTKQLLDLY 71 (162)
Q Consensus 39 C~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry 71 (162)
|+-..+++| +|..|...+|. .+.+|++.|
T Consensus 52 C~~gP~v~v---~g~~y~~vt~~-~i~~i~~~~ 80 (80)
T cd03064 52 CDLAPVMMI---NDDVYGRLTPE-KVDAILEAL 80 (80)
T ss_pred CCCCCEEEE---CCEEECCCCHH-HHHHHHHhC
Confidence 655455555 37788777775 677777653
No 117
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=25.76 E-value=3.8e+02 Score=22.05 Aligned_cols=62 Identities=18% Similarity=0.337 Sum_probs=39.6
Q ss_pred CCcceeccccccch---------hHhhHHhhhhccccEEEEEecCCCCcc-------cccCCc---cchHHHHHHHhhhh
Q 031283 15 TNRQVTFSKRRNGL---------FKKARELTILCDAKVSILICSSTAKAH-------EYISPS---TTTKQLLDLYQKTL 75 (162)
Q Consensus 15 ~~R~~tf~KR~~gL---------~KKA~ELs~LC~v~va~ivfsp~gk~~-------~~~~p~---~~v~~ii~ry~~~~ 75 (162)
+.|.+.|++-|..| +-+--.+++=||-|.-..+.-|+|+.| -|+... ...+.+|..-++..
T Consensus 180 ~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~v~q~g~gfCHl~t~~Cfg~~~~gL~~LEs~l~~Rk~~a 259 (359)
T KOG4311|consen 180 SGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFLVTQDGPGFCHLGTETCFGTSVFGLYSLESILSKRKETA 259 (359)
T ss_pred cCcceEEecccceeeeccccCcCceeeEEEeeccCccceEEEEecCCCcccccCcceeeeeechhhhhHHHHHHHhhhcC
Confidence 45666777767644 445557899999999988888888744 344332 14566665444443
Q ss_pred c
Q 031283 76 R 76 (162)
Q Consensus 76 ~ 76 (162)
+
T Consensus 260 P 260 (359)
T KOG4311|consen 260 P 260 (359)
T ss_pred C
Confidence 3
No 118
>COG3411 Ferredoxin [Energy production and conversion]
Probab=25.72 E-value=54 Score=20.65 Aligned_cols=28 Identities=7% Similarity=0.191 Sum_probs=21.6
Q ss_pred EEEEecCCCCcccccCCccchHHHHHHHh
Q 031283 44 SILICSSTAKAHEYISPSTTTKQLLDLYQ 72 (162)
Q Consensus 44 a~ivfsp~gk~~~~~~p~~~v~~ii~ry~ 72 (162)
+++++.|+|--|....|+ .+++|++...
T Consensus 18 Pvl~vYpegvWY~~V~p~-~a~rIv~~hl 45 (64)
T COG3411 18 PVLVVYPEGVWYTRVDPE-DARRIVQSHL 45 (64)
T ss_pred CEEEEecCCeeEeccCHH-HHHHHHHHHH
Confidence 567788889888888887 5778877654
No 119
>PF06020 Roughex: Drosophila roughex protein; InterPro: IPR009259 This family consists of several roughex (RUX) proteins specific to Drosophila species. Roughex can influence the intracellular distribution of cyclin A and is therefore defined as a distinct and specialised cell cycle inhibitor for cyclin A-dependent kinase activity []. Rux is though to regulate the metaphase to anaphase transition during development [].
Probab=25.60 E-value=34 Score=28.11 Aligned_cols=15 Identities=0% Similarity=0.127 Sum_probs=12.7
Q ss_pred hhhccccEEEEEecC
Q 031283 36 TILCDAKVSILICSS 50 (162)
Q Consensus 36 s~LC~v~va~ivfsp 50 (162)
.-+||+|||++||--
T Consensus 183 ~~~~~~EICLavYek 197 (334)
T PF06020_consen 183 GQVSGFEICLAVYEK 197 (334)
T ss_pred CccccceEEeeehhh
Confidence 357999999999975
No 120
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=25.51 E-value=2.5e+02 Score=23.65 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=20.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhhcC
Q 031283 83 HYEKMLENLGAVEQVNRILKKQIRQRMGE 111 (162)
Q Consensus 83 ~~~~lq~el~klk~~~~~l~~~~~~~~g~ 111 (162)
+...|++|.++||++|.+|..++..+..+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33467888888888888888777666543
No 121
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=25.22 E-value=54 Score=17.45 Aligned_cols=19 Identities=16% Similarity=-0.048 Sum_probs=13.5
Q ss_pred cEEEEEecCCCCcccccCC
Q 031283 42 KVSILICSSTAKAHEYISP 60 (162)
Q Consensus 42 ~va~ivfsp~gk~~~~~~p 60 (162)
.-.-..|||+|+-..|.+.
T Consensus 10 ~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEE
T ss_pred cccCEEEecCCCEEEEEec
Confidence 4556789999998887763
No 122
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=25.20 E-value=1.4e+02 Score=19.76 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=8.7
Q ss_pred hhhhhhhhhhHHHHHHHHHH
Q 031283 83 HYEKMLENLGAVEQVNRILK 102 (162)
Q Consensus 83 ~~~~lq~el~klk~~~~~l~ 102 (162)
.+..+..-++.|.++++.+.
T Consensus 34 ~LD~Lns~LD~LE~rnD~l~ 53 (83)
T PF03670_consen 34 MLDQLNSCLDHLEQRNDHLH 53 (83)
T ss_pred HHHHHHHHHHHHHHhhhHHH
Confidence 33444444444444444443
No 123
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=25.15 E-value=8.4 Score=24.20 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=22.0
Q ss_pred EEEEEecCCCCcccccCCccchHHHHHHHhhhhc
Q 031283 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (162)
Q Consensus 43 va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~ 76 (162)
|+++||+| ++++..+. .+.+.+..|+....
T Consensus 15 v~LlvfGp-~kLP~l~r---~lGk~i~~frk~~~ 44 (63)
T PRK14859 15 IVLIVFGA-GKLPEIGG---GLGKSIKNFKKATS 44 (63)
T ss_pred HHHHHhCc-hHHHHHHH---HHHHHHHHHHHHhc
Confidence 67899999 58877654 36677888876644
No 124
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=25.14 E-value=1.6e+02 Score=20.63 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=31.9
Q ss_pred hhhhhh-hhhhhhhHHHHHHHHHHHHHHhhhcCC--C-CCCCHHHHHHHHHHHH
Q 031283 80 WSSHYE-KMLENLGAVEQVNRILKKQIRQRMGES--L-NDLTLEELTGLEQDIL 129 (162)
Q Consensus 80 ~~~~~~-~lq~el~klk~~~~~l~~~~~~~~g~~--L-~~Ls~eeL~~Le~~Le 129 (162)
.+.++. ..++|++-|+.++.+|+.+...+..++ | .-.|.++|.+|-.++.
T Consensus 57 VKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~~~~~ 110 (123)
T KOG4797|consen 57 VKTHLMFAVREEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQLPAQLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhcc
Confidence 344444 456777888888877777666555433 2 3347888888776654
No 125
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=24.93 E-value=89 Score=18.58 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHHHH----HHHHHHHH
Q 031283 112 SLNDLTLEELTGLEQDILD----GLKIIHEC 138 (162)
Q Consensus 112 ~L~~Ls~eeL~~Le~~Le~----~L~~ir~R 138 (162)
-|..+|++||++....|+. -+..+|.|
T Consensus 4 fLk~ls~~eL~~rl~~LD~~ME~Eieelr~R 34 (49)
T PF11629_consen 4 FLKFLSYEELQQRLASLDPEMEQEIEELRQR 34 (49)
T ss_dssp GGGGS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4677899998876665554 44444444
No 126
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=24.56 E-value=9.9 Score=25.62 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=19.9
Q ss_pred EEEEEecCCCCcccccCCccchHHHHHHHhhhh
Q 031283 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKTL 75 (162)
Q Consensus 43 va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~ 75 (162)
|++|||+| +|++.... .+...+..|++..
T Consensus 17 VaLlvfGP-~KLP~lar---~lGk~i~~fkk~~ 45 (90)
T PRK14857 17 IALLVFGP-KKLPEIGR---SLGKTLKGFQEAS 45 (90)
T ss_pred HHHHHcCc-hHHHHHHH---HHHHHHHHHHHHH
Confidence 57899999 67776654 3556666666653
No 127
>TIGR03274 methan_mark_7 putative methanogenesis marker protein 7. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=24.51 E-value=1.4e+02 Score=24.50 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=18.5
Q ss_pred ccchhHhhHHhhhhccccEEEEEecCC
Q 031283 25 RNGLFKKARELTILCDAKVSILICSST 51 (162)
Q Consensus 25 ~~gL~KKA~ELs~LC~v~va~ivfsp~ 51 (162)
+..+..|+.-.-- |++.+ +||=+|+
T Consensus 140 k~hI~~K~rl~l~-i~iP~-VV~~~P~ 164 (302)
T TIGR03274 140 EDCIKKKMPLFRD-IDIPV-VVTGGPE 164 (302)
T ss_pred HHHHHHHHHHHhc-CCCCE-EEeCCCc
Confidence 4667888865544 89988 7887885
No 128
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=24.45 E-value=2.1e+02 Score=18.72 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=15.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 031283 81 SSHYEKMLENLGAVEQVNRILKKQIRQRM 109 (162)
Q Consensus 81 ~~~~~~lq~el~klk~~~~~l~~~~~~~~ 109 (162)
...++..+.+.++|+.+|+-|+.=+..++
T Consensus 36 ~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 36 SDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666655444333
No 129
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=23.89 E-value=1.3e+02 Score=21.93 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=23.6
Q ss_pred ccccchhHhhHHhhhhccccEEEEEecCC
Q 031283 23 KRRNGLFKKARELTILCDAKVSILICSST 51 (162)
Q Consensus 23 KR~~gL~KKA~ELs~LC~v~va~ivfsp~ 51 (162)
...+-|+++|.+++--=+...+++.|.|.
T Consensus 19 ~GHq~Li~~~~~~a~~~~~~~~v~tF~~~ 47 (157)
T PF06574_consen 19 LGHQKLIKKAVEIAKEKGLKSVVLTFDPH 47 (157)
T ss_dssp HHHHHHHHHHHHHHHHCT-EEEEEEESS-
T ss_pred HHHHHHHHHHhhhhhhcccceEEEEcccC
Confidence 34566899999999999999999999983
No 130
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=23.83 E-value=44 Score=23.01 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=37.7
Q ss_pred CCCcccceeEecCCCCcceeccccccchhHhhHHhhhhc----cccEEEEEecCCCCcccccCCc
Q 031283 1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILC----DAKVSILICSSTAKAHEYISPS 61 (162)
Q Consensus 1 MgR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC----~v~va~ivfsp~gk~~~~~~p~ 61 (162)
|||+|.+.+.|-. .|+--+.|+.+.++= -+|.++.| ...+++++.+..|--|.+--|+
T Consensus 1 MG~rr~krr~~ik--~~~~~L~k~FtCp~C-ghe~vs~ctvkk~~~~g~~~Cg~CGls~e~ev~~ 62 (104)
T COG4888 1 MGRRRRKRRKIIK--RRPQVLPKTFTCPRC-GHEKVSSCTVKKTVNIGTAVCGNCGLSFECEVPE 62 (104)
T ss_pred CCcccccccccCc--ccCccCCceEecCcc-CCeeeeEEEEEecCceeEEEcccCcceEEEeccc
Confidence 9999988887654 333335565555542 34556656 3467888888888777665554
No 131
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.70 E-value=2.3e+02 Score=22.95 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=39.7
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeEEEe
Q 031283 80 WSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIKPYTLCASSSTTVIVN 157 (162)
Q Consensus 80 ~~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l~~~~~~~s~~~~~~~ 157 (162)
+..+++.++.+.+.++++++..+.++..+.+ ++..+++.|...-..+..|-..+-...-+++=+=|||+
T Consensus 57 L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~---------eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~ 125 (265)
T COG3883 57 LDNQIEEIQSKIDELQKEIDQSKAEIKKLQK---------EIAELKENIVERQELLKKRARAMQVNGTATSYIDVILN 125 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHc
Confidence 3445556666666666666666666655553 46667777777777777776664443333333444443
No 132
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=23.65 E-value=4.5e+02 Score=22.69 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred EecCCCCcccccCCccchHHHHHHHhhhhc------------ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCC
Q 031283 47 ICSSTAKAHEYISPSTTTKQLLDLYQKTLR------------VDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLN 114 (162)
Q Consensus 47 vfsp~gk~~~~~~p~~~v~~ii~ry~~~~~------------~~~~~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~ 114 (162)
+++++|.- .|.+++.....|++..+..-. .+.....+.++-+-++..+-..++|+..+..+..-..+
T Consensus 246 ~~g~~~~n-~~~s~~~~l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQn 324 (455)
T KOG3850|consen 246 VPGHGGAN-PYHSQGAALDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQN 324 (455)
T ss_pred CCCCCCCC-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred CC-CHH-HHHHHH-----------HHHHHHHHHHHHHHHhhhhhhh
Q 031283 115 DL-TLE-ELTGLE-----------QDILDGLKIIHECKVIKPYTLC 147 (162)
Q Consensus 115 ~L-s~e-eL~~Le-----------~~Le~~L~~ir~RK~~l~~~~~ 147 (162)
.+ +++ ||..+| ..+++++.....|..+|=..|+
T Consensus 325 Ei~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 325 EIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 133
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=23.44 E-value=52 Score=27.02 Aligned_cols=25 Identities=8% Similarity=0.109 Sum_probs=20.4
Q ss_pred hhhccccEEEEEecC--CCCcccccCC
Q 031283 36 TILCDAKVSILICSS--TAKAHEYISP 60 (162)
Q Consensus 36 s~LC~v~va~ivfsp--~gk~~~~~~p 60 (162)
+++-|..+|++.|++ +||-|+...|
T Consensus 68 ~~~~G~n~~i~ayG~tgSGKT~Tm~G~ 94 (341)
T cd01372 68 GLFEGYNATVLAYGQTGSGKTYTMGTA 94 (341)
T ss_pred HHhCCCccceeeecCCCCCCcEEecCC
Confidence 457799999999997 5798987665
No 134
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=23.10 E-value=2.8e+02 Score=19.67 Aligned_cols=70 Identities=10% Similarity=0.125 Sum_probs=30.7
Q ss_pred chHHHHHHHhhhhc-ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031283 63 TTKQLLDLYQKTLR-VDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIH 136 (162)
Q Consensus 63 ~v~~ii~ry~~~~~-~~~~~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir 136 (162)
.+..|+..|..... ...+....+.++.++.....+...+...+ . ..-..+|.++.......+......++
T Consensus 23 d~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l---~-~~~~~ls~~~~~~~~~~l~~~~~~l~ 93 (158)
T PF03938_consen 23 DVDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKL---Q-SQKATLSEEERQKRQQELQQKEQELQ 93 (158)
T ss_dssp -HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T-TS----SSHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHhhccchhHHHHHHHHHHHHHHHHH
Confidence 46677777754432 12223333444444444444443333222 1 22336677766666666655444333
No 135
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.82 E-value=3.5e+02 Score=25.98 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=16.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHH
Q 031283 82 SHYEKMLENLGAVEQVNRILKKQI 105 (162)
Q Consensus 82 ~~~~~lq~el~klk~~~~~l~~~~ 105 (162)
..+.+++.++.+++++.+.++..+
T Consensus 930 ~e~~kl~kkl~klqk~~~~l~~r~ 953 (995)
T KOG0432|consen 930 SEIQKLAKKLEKLQKQLDKLQARI 953 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777777777777766544
No 136
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=22.81 E-value=3.5e+02 Score=20.63 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=31.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031283 85 EKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVI 141 (162)
Q Consensus 85 ~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~ 141 (162)
..+++.+..+++....++.+++.+- ..|+.+|++.=...|..-...-++|...
T Consensus 89 ~~l~ek~q~l~~t~s~veaEik~L~----s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 89 VALTEKVQSLQQTCSYVEAEIKELS----SALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333 4578999998888887776666666544
No 137
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=22.76 E-value=7.4e+02 Score=24.35 Aligned_cols=26 Identities=15% Similarity=-0.015 Sum_probs=16.6
Q ss_pred hHHhhhhccccEEEEEecCCCCcccc
Q 031283 32 ARELTILCDAKVSILICSSTAKAHEY 57 (162)
Q Consensus 32 A~ELs~LC~v~va~ivfsp~gk~~~~ 57 (162)
|..+-.+||..+-+---..++.+|.-
T Consensus 138 ~e~~le~vGl~~~~~~s~s~~~~~~s 163 (1195)
T KOG4643|consen 138 AEKLLELVGLEKKYRESRSGKELYKS 163 (1195)
T ss_pred HHHHHHHhcccceeeccccCCCCCCC
Confidence 45556789988877665555555543
No 138
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=22.70 E-value=3.2e+02 Score=20.10 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=31.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031283 87 MLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIK 142 (162)
Q Consensus 87 lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l 142 (162)
+...+..++..+...++++..+.+ ++--.++++..|-+.+++.-..+...-.-+
T Consensus 59 ~~~~v~~~~~~i~~k~~El~~L~~--~d~~kv~~~E~L~d~v~eLkeel~~el~~l 112 (146)
T PF05852_consen 59 IKNKVSSLETEISEKKKELSHLKK--FDRKKVEDLEKLTDRVEELKEELEFELERL 112 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445444445444443 666677777777777777777766665554
No 139
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.61 E-value=1.2e+02 Score=24.34 Aligned_cols=69 Identities=6% Similarity=-0.020 Sum_probs=30.1
Q ss_pred hHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhhcc---c--chhhhhhhhhhhhhHHHHHHHHHHH
Q 031283 32 ARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRV---D--LWSSHYEKMLENLGAVEQVNRILKK 103 (162)
Q Consensus 32 A~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~~---~--~~~~~~~~lq~el~klk~~~~~l~~ 103 (162)
+-=|+.|+++-+....+.|. .+...++++ .++=+.+..+.... - .+..+++.++.|+..|+-+++.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~a~a-~v~~~~~~~--~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~ 82 (263)
T PRK10803 9 LLSLSLLVGVAAPWAAFAQA-PISSVGSGS--VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQY 82 (263)
T ss_pred HHHHHHHHHHhhhHHHhcCC-cHHHcCCCc--hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34456777754444444442 222222333 33444444333221 1 1234555555555555555544433
No 140
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=22.54 E-value=71 Score=19.35 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=10.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 031283 115 DLTLEELTGLEQDILDGLKIIHEC 138 (162)
Q Consensus 115 ~Ls~eeL~~Le~~Le~~L~~ir~R 138 (162)
++|.+||.+....+...|-..|-.
T Consensus 6 ~ls~~eL~~~l~elk~eL~~Lr~q 29 (58)
T PF00831_consen 6 ELSDEELQEKLEELKKELFNLRFQ 29 (58)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 141
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=22.38 E-value=1.3e+02 Score=20.06 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 031283 115 DLTLEELTGLEQDILDGLKIIH 136 (162)
Q Consensus 115 ~Ls~eeL~~Le~~Le~~L~~ir 136 (162)
.+++++|+.|...|.++-+.+.
T Consensus 70 ~c~~e~L~~Li~~Lk~A~~~~e 91 (95)
T cd04751 70 TCTLEQLQDLVNKLKDAAKNIE 91 (95)
T ss_pred EeCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999888877764
No 142
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.32 E-value=1.4e+02 Score=18.92 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=17.4
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHh
Q 031283 81 SSHYEKMLENLGAVEQVNRILKKQIRQ 107 (162)
Q Consensus 81 ~~~~~~lq~el~klk~~~~~l~~~~~~ 107 (162)
..+++.++.+++.++.+++.|+.++..
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777766543
No 143
>PHA02562 46 endonuclease subunit; Provisional
Probab=22.16 E-value=2.7e+02 Score=24.26 Aligned_cols=28 Identities=11% Similarity=0.248 Sum_probs=13.1
Q ss_pred EEecCCCCcccccC-CccchHHHHHHHhh
Q 031283 46 LICSSTAKAHEYIS-PSTTTKQLLDLYQK 73 (162)
Q Consensus 46 ivfsp~gk~~~~~~-p~~~v~~ii~ry~~ 73 (162)
+|+-|.|....|.. +..+-.++++++.+
T Consensus 133 ~v~l~q~~f~~f~~~~~~er~~il~~l~~ 161 (562)
T PHA02562 133 IVVLGTAGYVPFMQLSAPARRKLVEDLLD 161 (562)
T ss_pred HheeccCchhhHhcCChHhHHHHHHHHhC
Confidence 34555565554422 21234456666544
No 144
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=21.93 E-value=46 Score=27.14 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=18.0
Q ss_pred hhhccccEEEEEecC--CCCcccccC
Q 031283 36 TILCDAKVSILICSS--TAKAHEYIS 59 (162)
Q Consensus 36 s~LC~v~va~ivfsp--~gk~~~~~~ 59 (162)
+++-|..+|+++|++ +||-|+...
T Consensus 69 ~~l~G~n~~i~ayG~tgSGKT~Tm~G 94 (335)
T PF00225_consen 69 SVLDGYNATIFAYGQTGSGKTYTMFG 94 (335)
T ss_dssp HHHTT-EEEEEEEESTTSSHHHHHTB
T ss_pred HhhcCCceEEEeeccccccccccccc
Confidence 467899999999998 478876444
No 145
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.92 E-value=5.4e+02 Score=22.51 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=30.1
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhhc----------C--CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031283 81 SSHYEKMLENLGAVEQVNRILKKQIRQRMG----------E--SLNDLTLEELTGLEQDILDGLKIIHECK 139 (162)
Q Consensus 81 ~~~~~~lq~el~klk~~~~~l~~~~~~~~g----------~--~L~~Ls~eeL~~Le~~Le~~L~~ir~RK 139 (162)
+.++..++.++..+..+...++..+..+.+ + ..+..++.++.++...+...+..++.++
T Consensus 77 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
T TIGR02231 77 RKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTED 147 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554444322221 1 1235677777777765555554444443
No 146
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=21.91 E-value=2e+02 Score=19.42 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=14.4
Q ss_pred HHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Q 031283 104 QIRQRMGESLNDLTLEELTGLEQDILDGL 132 (162)
Q Consensus 104 ~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L 132 (162)
.++.....+++.||++|-......+...+
T Consensus 48 ~~~~~~~kn~~~ms~~e~~k~~~ev~k~~ 76 (93)
T PF06518_consen 48 QFKEAARKNLSKMSVEERKKRREEVRKAL 76 (93)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 33344445566666666655555444443
No 147
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=21.90 E-value=2.7e+02 Score=19.37 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=14.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHh
Q 031283 81 SSHYEKMLENLGAVEQVNRILKKQIRQ 107 (162)
Q Consensus 81 ~~~~~~lq~el~klk~~~~~l~~~~~~ 107 (162)
+..+..+-+|...|+.+|+.|+..+..
T Consensus 28 K~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 28 KKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666555544
No 148
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=21.88 E-value=40 Score=23.28 Aligned_cols=53 Identities=17% Similarity=0.342 Sum_probs=34.2
Q ss_pred ccceeEe-cCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhh
Q 031283 5 KMEMKRI-ENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (162)
Q Consensus 5 ki~ik~I-~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~ 74 (162)
++++|-+ .|.++=.++|.||..|+-+ +=...+|..-.|+..- .+.++..|...
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~Girq---------------fEi~n~G~~RI~gYk~--se~~~~~f~sl 72 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKGIRQ---------------FEIRNKGEFRIFGYKM--SEEIIKKFTSL 72 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETTEEE---------------EEEETTSEEEEEEES----HHHHHHHHHT
T ss_pred ceeeeeeEeeccceEEeeecccCceeE---------------EEEecCCcEEEEEEcC--CHHHHHHHHhc
Confidence 4666665 7888999999999998753 1123556666666542 35777777654
No 149
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.83 E-value=4.1e+02 Score=21.04 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=35.4
Q ss_pred hHHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc-CCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031283 64 TKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMG-ESLNDLTLEELTGLEQDILDGLKIIH 136 (162)
Q Consensus 64 v~~ii~ry~~~~~~~~~~~~~~~lq~el~klk~~~~~l~~~~~~~~g-~~L~~Ls~eeL~~Le~~Le~~L~~ir 136 (162)
...|.++|...... .+-+++..+|.+-=++..+++..+..+.+ .++. +-..|.+.-..+|..+.+.+
T Consensus 24 F~~i~~K~~~~~n~----~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diK--dk~~L~e~Rk~IE~~MErFK 91 (233)
T PF04065_consen 24 FDEIYEKVESATNQ----NQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIK--DKKKLLENRKLIEEQMERFK 91 (233)
T ss_pred HHHHHHHHHcccCc----chHHHHHHHHHHHHHHHHHHHHHHHHHccCcccc--cHHHHHHHHHHHHHHHHHHH
Confidence 34555555553332 23345555444433344444445556654 4566 34457777777777666654
No 150
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=21.80 E-value=88 Score=25.96 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=19.7
Q ss_pred hhhccccEEEEEecC--CCCcccccCC
Q 031283 36 TILCDAKVSILICSS--TAKAHEYISP 60 (162)
Q Consensus 36 s~LC~v~va~ivfsp--~gk~~~~~~p 60 (162)
+++-|..+|+++|++ +||-|+...+
T Consensus 83 ~~l~G~n~~i~ayGqtGSGKT~Tm~G~ 109 (356)
T cd01365 83 HAFEGYNVCLFAYGQTGSGKSYTMMGY 109 (356)
T ss_pred HHhCCCceEEEEecCCCCCCeEEecCC
Confidence 368899999999998 5788874433
No 151
>PF10666 Phage_Gp14: Phage protein Gp14; InterPro: IPR018923 This Listeria phage Gp14 protein family is of unknown function but is expressed from within a cluster of tail- and base plate genes [].
Probab=21.75 E-value=3.1e+02 Score=19.69 Aligned_cols=46 Identities=22% Similarity=0.162 Sum_probs=24.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031283 86 KMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKII 135 (162)
Q Consensus 86 ~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~i 135 (162)
++++...+.+++.+.+.+ ..-+..+.+|.+++..|+.....+|...
T Consensus 36 k~~e~~~kykkk~e~l~k----~~id~~~EmS~e~~~aLe~~~re~L~ea 81 (140)
T PF10666_consen 36 KWIEADEKYKKKAEKLNK----YNIDFDREMSSEEYRALEEQQREALKEA 81 (140)
T ss_pred HHHHHHHHHHHHHHHhhh----hcccchhhcCHHHHHHHHHHHHHHHHHH
Confidence 344444455555444432 1112346677777777777766666543
No 152
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=21.74 E-value=3.8e+02 Score=20.65 Aligned_cols=34 Identities=9% Similarity=-0.079 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 031283 113 LNDLTLEELTGLEQDILDGLKIIHECKVIKPYTL 146 (162)
Q Consensus 113 L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l~~~~ 146 (162)
++-.+..-+++=......+|+....|...++.+.
T Consensus 98 FGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN 131 (195)
T PF10226_consen 98 FGRYTASVMRQEVAQYQQKLKELEDKQEELIREN 131 (195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4445555555555666777777877777776654
No 153
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=21.67 E-value=1.5e+02 Score=24.12 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=26.8
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 031283 110 GESLNDLTLEELTGLEQDILDGLKIIHECKVIKPYT 145 (162)
Q Consensus 110 g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l~~~ 145 (162)
-+.|.+|+++||.+|-..|...+..|-+--.+.+++
T Consensus 213 rEeL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~~vQE 248 (285)
T PF06937_consen 213 REELNSMTLDELKQLNEKLLQQIQDVFEELTQQVQE 248 (285)
T ss_pred HHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999988887776666555554443
No 154
>PF08796 DUF1797: Protein of unknown function (DUF1797); InterPro: IPR014904 The function of this protein is unknown. It forms a central anti-parallel beta sheet with flanking alpha helical regions. ; PDB: 2FFG_B.
Probab=21.35 E-value=68 Score=20.38 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=14.8
Q ss_pred ccccEEEEEecCCCCcccc
Q 031283 39 CDAKVSILICSSTAKAHEY 57 (162)
Q Consensus 39 C~v~va~ivfsp~gk~~~~ 57 (162)
=|+++|.|.|.|....|+.
T Consensus 24 ~G~~~c~V~y~~~t~~F~l 42 (67)
T PF08796_consen 24 EGVEVCTVTYDQETETFEL 42 (67)
T ss_dssp TTEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEEEEECCCCeEEE
Confidence 3899999999997665543
No 155
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=21.29 E-value=91 Score=25.31 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=18.4
Q ss_pred hhccccEEEEEecC--CCCcccccC
Q 031283 37 ILCDAKVSILICSS--TAKAHEYIS 59 (162)
Q Consensus 37 ~LC~v~va~ivfsp--~gk~~~~~~ 59 (162)
++.|..+|+++|++ +||-|+...
T Consensus 74 ~~~G~~~~i~~yG~tgSGKT~tl~G 98 (328)
T cd00106 74 VLEGYNGTIFAYGQTGSGKTYTMFG 98 (328)
T ss_pred HhCCCceeEEEecCCCCCCeEEecC
Confidence 46799999999998 578887444
No 156
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=21.28 E-value=1.9e+02 Score=18.20 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 031283 118 LEELTGLEQDILDGLKIIHECKVIK 142 (162)
Q Consensus 118 ~eeL~~Le~~Le~~L~~ir~RK~~l 142 (162)
..|+..++..|......+.+||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677888888888888888887664
No 157
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=21.06 E-value=1.1e+02 Score=19.50 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=29.0
Q ss_pred cchhHhhHHhhhhccccEEEEEecCCCCccccc
Q 031283 26 NGLFKKARELTILCDAKVSILICSSTAKAHEYI 58 (162)
Q Consensus 26 ~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~ 58 (162)
.++..+-.++-++.|.+|-++-.+|-|.|..+.
T Consensus 20 ~~~~~rL~~mGl~pG~~V~v~~~aP~gdPi~i~ 52 (74)
T PRK09555 20 PAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHIE 52 (74)
T ss_pred hHHHHHHHHcCCCCCCEEEEEEECCCCCCEEEE
Confidence 558889999999999999999999988877654
No 158
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=20.88 E-value=80 Score=25.76 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=19.5
Q ss_pred hhhccccEEEEEecC--CCCcccccCC
Q 031283 36 TILCDAKVSILICSS--TAKAHEYISP 60 (162)
Q Consensus 36 s~LC~v~va~ivfsp--~gk~~~~~~p 60 (162)
+++-|..+|++.|++ +||-|+...+
T Consensus 72 ~~~~G~~~~i~ayG~tgSGKT~tl~G~ 98 (329)
T cd01366 72 SALDGYNVCIFAYGQTGSGKTYTMEGP 98 (329)
T ss_pred HHhCCCceEEEEeCCCCCCCcEEecCC
Confidence 456799999999998 5788875443
No 159
>PRK00153 hypothetical protein; Validated
Probab=20.77 E-value=2.8e+02 Score=18.71 Aligned_cols=34 Identities=24% Similarity=0.106 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhh
Q 031283 114 NDLTLEELTGLEQ-DILDGLKIIHECKVIKPYTLC 147 (162)
Q Consensus 114 ~~Ls~eeL~~Le~-~Le~~L~~ir~RK~~l~~~~~ 147 (162)
+..+.+.|.++.- .+.+++..+.+...+.+....
T Consensus 61 ~~~d~e~LedlI~~A~n~A~~~~~~~~~e~m~~~~ 95 (104)
T PRK00153 61 DPEDVEMLEDLILAAFNDALRKAEETMKEKMGKLT 95 (104)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666655543 255566666665555554433
No 160
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=20.65 E-value=1.8e+02 Score=21.03 Aligned_cols=34 Identities=9% Similarity=0.169 Sum_probs=26.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCH
Q 031283 85 EKMLENLGAVEQVNRILKKQIRQRMGESLNDLTL 118 (162)
Q Consensus 85 ~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~ 118 (162)
..||.++++.++....+...++++.|-+-++.-.
T Consensus 6 ~~Lq~qlE~Ake~Lk~vDenIkKltGRDp~e~rp 39 (134)
T PF04697_consen 6 RTLQAQLEKAKESLKNVDENIKKLTGRDPSENRP 39 (134)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhCCCccccCc
Confidence 4688889999988888888899898866555543
No 161
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=20.62 E-value=3.8e+02 Score=20.25 Aligned_cols=9 Identities=22% Similarity=0.154 Sum_probs=5.7
Q ss_pred cccccCCcc
Q 031283 54 AHEYISPST 62 (162)
Q Consensus 54 ~~~~~~p~~ 62 (162)
.+.|+-|+.
T Consensus 54 n~YWsFps~ 62 (188)
T PF03962_consen 54 NYYWSFPSQ 62 (188)
T ss_pred eEEEecChH
Confidence 456777764
No 162
>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins. It contains two of three predicted coiled-coil motifs. Most proteins containing this domain also have IPR019134 from INTERPRO at the C-terminal end. Upstream of this domain in Drosophila proteins are a serine-rich region, some non-typical RD motifs and three predicted bipartite nuclear localisation signals, none of which are well-conserved. Cactin associates with IkappaB-cactus as one of the intracellular members of the Rel (NF-kappaB) pathway which is conserved in invertebrates and vertebrates. In mammals, this pathway controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo [].
Probab=20.51 E-value=92 Score=23.81 Aligned_cols=21 Identities=43% Similarity=0.526 Sum_probs=19.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 031283 113 LNDLTLEELTGLEQDILDGLK 133 (162)
Q Consensus 113 L~~Ls~eeL~~Le~~Le~~L~ 133 (162)
|.+-|.+||..|+.++..+|.
T Consensus 140 l~gKs~~eL~~Le~qI~~KL~ 160 (191)
T PF10312_consen 140 LSGKSYEELEELEQQIKAKLR 160 (191)
T ss_pred HccCCHHHHHHHHHHHHHHhh
Confidence 688899999999999998875
No 163
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=20.21 E-value=4.7e+02 Score=21.13 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=56.0
Q ss_pred hhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhhcc-cchhhhhhhhhhhhhHHHHHHHHHHHHHHhhhcC-C
Q 031283 35 LTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRV-DLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGE-S 112 (162)
Q Consensus 35 Ls~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~~-~~~~~~~~~lq~el~klk~~~~~l~~~~~~~~g~-~ 112 (162)
|+.-...+||||-.++++-.+-||+|.. ...... +....... .......+.-.+.+.++++.++.+ .
T Consensus 39 L~l~~~N~vaVIAs~~~~s~~LYP~~~~---------~~~~~~~~~~~~~~~--~~~y~~f~~v~~~v~~~l~~l~~~~~ 107 (276)
T PF03850_consen 39 LALNHSNQVAVIASHSNSSKFLYPSPSS---------SESSNSGDVEMNSSD--SNKYRQFRNVDETVLEELKKLMSETS 107 (276)
T ss_pred HhhCccCCEEEEEEcCCccEEEeCCCcc---------ccccCCCcccccccc--cchhHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455677999999999998888888861 000000 00000000 011111111222222333334332 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccceeeEEEecc
Q 031283 113 LNDLTLEELTGLEQDILDGLKIIHECKVIKPY-TLCASSSTTVIVNVS 159 (162)
Q Consensus 113 L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l~~-~~~~~s~~~~~~~~~ 159 (162)
-++.+..+ ..|-..|..+|.-|......... ..--+++..+++.+|
T Consensus 108 ~~~~~~~~-s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s 154 (276)
T PF03850_consen 108 ESSDSTTS-SLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGS 154 (276)
T ss_pred cccccccc-hhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecC
Confidence 22222222 77888999999999877554321 134556666644443
No 164
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=20.16 E-value=1.7e+02 Score=17.53 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=13.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 031283 113 LNDLTLEELTGLEQDILDGLKIIH 136 (162)
Q Consensus 113 L~~Ls~eeL~~Le~~Le~~L~~ir 136 (162)
+.++|.+||......+...|-..+
T Consensus 3 ir~ls~~eL~~~l~~l~~elf~Lr 26 (57)
T cd00427 3 LREKSDEELQEKLDELKKELFNLR 26 (57)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHH
Confidence 445566666665555555555444
No 165
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=20.13 E-value=5.7e+02 Score=22.02 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=28.7
Q ss_pred HHHHHHHhhhhcc---cchhhhhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 031283 65 KQLLDLYQKTLRV---DLWSSHYEKMLENLGAVEQVNRILKKQIRQRM 109 (162)
Q Consensus 65 ~~ii~ry~~~~~~---~~~~~~~~~lq~el~klk~~~~~l~~~~~~~~ 109 (162)
+.+++.|...... +....-.++++.++..++.+.+..+.++..+.
T Consensus 141 n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 141 QTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455557655331 22334557788888888888888877776654
Done!